Citrus Sinensis ID: 008669
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXN0 | 703 | ABC transporter G family | yes | no | 0.958 | 0.759 | 0.856 | 0.0 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.924 | 0.745 | 0.584 | 0.0 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.886 | 0.719 | 0.602 | 1e-177 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.897 | 0.737 | 0.539 | 1e-160 | |
| Q9ZUU9 | 730 | ABC transporter G family | no | no | 0.974 | 0.743 | 0.382 | 1e-102 | |
| Q5MB13 | 654 | ATP-binding cassette sub- | yes | no | 0.820 | 0.698 | 0.352 | 4e-72 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.820 | 0.697 | 0.354 | 2e-71 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.870 | 0.738 | 0.341 | 3e-71 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.868 | 0.736 | 0.341 | 3e-70 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.863 | 0.733 | 0.339 | 5e-70 |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/542 (85%), Positives = 498/542 (91%), Gaps = 8/542 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGN 482
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI N
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIAN 480
Query: 483 TLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 542
TLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNF
Sbjct: 481 TLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNF 540
Query: 543 LM 544
LM
Sbjct: 541 LM 542
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/520 (58%), Positives = 403/520 (77%), Gaps = 5/520 (0%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
+ ++ ++ A L W+DLTV++ S+G T +L+ L GYAEPG + A+MGPSGSGK
Sbjct: 10 RRQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGK 69
Query: 96 STLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155
STLLD+L+ RLA N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA L
Sbjct: 70 STLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHL 129
Query: 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215
RLP M E +VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++
Sbjct: 130 RLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQI 189
Query: 216 LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
LFLDEPTSGLDSA+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VY
Sbjct: 190 LFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVY 249
Query: 276 FGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPL 333
FGE +A EFFA++GFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL
Sbjct: 250 FGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPL 308
Query: 334 EKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAFTLTKR 392
+ T+ L++ Y+ S+++ +AK ++ +S ++G ++ GS+A++ Q TLT R
Sbjct: 309 MNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTAR 368
Query: 393 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 452
SF+NM RD GYYW R++ Y+VV+I +GTI+ +VG Y SILAR SC F+ GF+TFMSIG
Sbjct: 369 SFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIG 428
Query: 453 GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFI 512
GFPSF+E+MKVF +ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+ PGF
Sbjct: 429 GFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFS 488
Query: 513 HYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 552
HY FF L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAG+
Sbjct: 489 HYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGL 528
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/501 (60%), Positives = 388/501 (77%), Gaps = 7/501 (1%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S G T +L+GL G+AEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 22 AYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 81
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRL + E
Sbjct: 82 NVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVND 141
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSGLDSA
Sbjct: 142 IVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSA 201
Query: 229 AAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+AFFV Q LR ++RD GRTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+ A EFFA
Sbjct: 202 SAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFA 261
Query: 288 QAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNL 345
+AGFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+E L
Sbjct: 262 EAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEIKARL 320
Query: 346 IDFYQTSQHSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 403
++ Y+ S ++ +AK ++ ++ ++G + GS+A++ Q TLTKRSFVNM RD GY
Sbjct: 321 VENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGY 380
Query: 404 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
YW R+VIY+VV+ C+GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKV
Sbjct: 381 YWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440
Query: 464 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 523
F +ERL+G+YGV+ ++I N +S+ PFL+ I I+G+I Y MV+ PG H+ FF L ++
Sbjct: 441 FYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFF 500
Query: 524 SVAVVESLMMAIASIVPNFLM 544
SV+V+ESLMM +AS+VPNFLM
Sbjct: 501 SVSVIESLMMVVASLVPNFLM 521
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/513 (53%), Positives = 374/513 (72%), Gaps = 13/513 (2%)
Query: 52 LTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
+ W+DLTV++ G T +L G+ G EP + A+MGPSGSGKSTLLDAL+ RLA N
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+SG +L+NG K +L FG AAYVTQ+D L+GTLTVRE+ISYSA LRLP K+ E +V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
E TI +MGL++C+D IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSGLDSA+A
Sbjct: 130 EATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASA 189
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
FFV Q LR ++ G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE +A +FF +AG
Sbjct: 190 FFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAG 249
Query: 291 FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---------FETSD--DPLEKITTA 339
FPCP+ RNPSDHFLRC+NSDFD V A L S ++ ET++ DPL+ I TA
Sbjct: 250 FPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTA 309
Query: 340 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAFTLTKRSFVNMS 398
E L+ ++ S ++ A++ +++ I+ + G V + GSQ ++ Q LT+RSF+NMS
Sbjct: 310 EIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFINMS 369
Query: 399 RDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFV 458
RD GYYW+R+ +Y+V++IC+G+I+ NVG + ++++ +C F+ GF+TFMSIGGF SF+
Sbjct: 370 RDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFI 429
Query: 459 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFV 518
E+MKVF RERLNGHYGV + + N LS++PF+I++ + +I +MVR G H+ +
Sbjct: 430 EEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNC 489
Query: 519 LCLYASVAVVESLMMAIASIVPNFLMGIITGAG 551
L L ++ VES MM IAS+VPNFLMG++ GAG
Sbjct: 490 LDLICAITTVESCMMMIASVVPNFLMGVMLGAG 522
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/568 (38%), Positives = 339/568 (59%), Gaps = 25/568 (4%)
Query: 3 DSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVS------------- 49
D+ ++ ME EA G+SI +P+S ++ K + S V
Sbjct: 53 DTPDVDLRMEDEAG--GGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIA 110
Query: 50 -ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A + WKDLTV + + V++ GYA PGT+T +MGP+ SGKSTLL AL+ RL
Sbjct: 111 GASIAWKDLTVTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPP 170
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
+A + G + +NG K+ + +G+ +V ++ LIG+LTVRE + YSA L+LP + +KR+
Sbjct: 171 SAKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQKRS 228
Query: 169 LVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+VE I M L D A+ +IG + +++G+ GERRRVSIA E++MRP +LF+DEP LDS
Sbjct: 229 VVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDS 288
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+A + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A + F+
Sbjct: 289 VSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 348
Query: 288 QAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLID 347
AGFPCP +++PSDHFLR IN+DFD++ A K + + D + TA AI+ L
Sbjct: 349 NAGFPCPIMQSPSDHFLRAINTDFDRIIAMCK---NWQDDNGDFSAVNMDTAVAIRTLEA 405
Query: 348 FYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLR 407
Y++S + + + + +++ +GT L + G +A + LT RS + MSR++ YYWLR
Sbjct: 406 TYKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKYYWLR 464
Query: 408 LVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQR 466
L++Y+++T+ IGT+Y +G +S+ R A FVF F + + I G PS ++++K+++
Sbjct: 465 LILYMILTLSIGTLYSGLGHSLSSVATR-VAAVFVFVSFASLLGIAGIPSLLKEIKIYRS 523
Query: 467 ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVA 526
E N H G F++G L ++PFL +++ S + YFMV L F ++FVL + +
Sbjct: 524 EASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLL 583
Query: 527 VVESLMMAIASIVPNFLMGIITGAGIQV 554
V E LM+ IA I + +T + V
Sbjct: 584 VNEGLMLFIACIWRDVYWSTLTLISVHV 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 255/476 (53%), Gaps = 19/476 (3%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGALRPTNFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRLP M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKV----KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTS---QHSYAAKEKV 362
D V + K + ++ D PL ++ L + Y S + + A ++
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKRDKPL--------VEKLAEIYVDSSFYKETKAELHQL 352
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
G K K TV SF Q ++KRSF N+ + ++++ V++ + IG IY
Sbjct: 353 SGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILGLVIGAIY 412
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGN 482
+ I R F+ F S+ FV + K+F E ++G+Y V+++ G
Sbjct: 413 FGLNNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGK 472
Query: 483 TLS-AMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 537
LS +P ++ + I I YFM+ L P + + L S+ +AIA+
Sbjct: 473 LLSDLLPMRMLPSIIFTCIVYFMLGLKPTADAFFIMMFTLMMVAYSASSMALAIAA 528
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells. Macaca mulatta (taxid: 9544) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 254/477 (53%), Gaps = 20/477 (4%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGAPRPANFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRL M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKV----KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGI 365
D V + K + ++ D PL I+ L + Y S K ++ +
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKQDKPL--------IEKLAEIYVNSSFYKETKAELHQL 352
Query: 366 S----KVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
S K K TV SF Q ++KRSF N+ + ++++ VV+ + IG I
Sbjct: 353 SGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAI 412
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIG 481
Y + I R F+ F S+ FV + K+F E ++G+Y V+++ +G
Sbjct: 413 YFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFLG 472
Query: 482 NTLS-AMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 537
LS +P ++ + I I YFM+ L P + + L S+ +AIA+
Sbjct: 473 KLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAA 529
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 176/515 (34%), Positives = 266/515 (51%), Gaps = 30/515 (5%)
Query: 40 INTEFSGDVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGS 93
+ T GDV L++ +T V + +G +L + G +PG L A++GP+G
Sbjct: 28 VRTLAEGDV---LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGG 83
Query: 94 GKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYS 152
GKS+LLD L++R LSG +L+NG F + YV QDD ++GTLTVRE + +S
Sbjct: 84 GKSSLLDVLAARKDPKG-LSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFS 142
Query: 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
A LRLP M EK + I E+GL+ AD+ +G +RGISGGER+R SI +E++
Sbjct: 143 AALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITD 202
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK
Sbjct: 203 PSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGK 262
Query: 273 TVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDP 332
V+ G A E+FA AG+ C NP+D FL IN D ++ L E D+
Sbjct: 263 LVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGD--------SSAVMLNREEQDNE 314
Query: 333 LEKITTAE-----AIKNLIDFYQTSQ---HSYAAKEKVEGISKVKGT-VLDAGGSQASFL 383
K I+NL +FY S + A +++ G + KGT SF
Sbjct: 315 ANKTEEPSKGEKPVIENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFC 374
Query: 384 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF 443
Q + +RSF N+ + +L++ V++ + IG IY ++ + R F+
Sbjct: 375 HQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGAIYFDLKYDAAGMQNRAGVLFFLT 434
Query: 444 GFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSA-MPFLIMITFISGTICY 502
F S+ FV + K+F E ++G+Y V+++ G +S +P + + I + Y
Sbjct: 435 TNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLY 494
Query: 503 FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 537
FM+ L + + L S+ +AIA+
Sbjct: 495 FMLGLKKTVDAFFIMMFTLIMVAYTASSMALAIAT 529
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 20/504 (3%)
Query: 46 GDVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL 99
GDV L++ +T V + +G +L + G +PG L A++GP+G GKS+LL
Sbjct: 34 GDV---LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLL 89
Query: 100 DALSSRLASNAFLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP 158
D L++R LSG +L+NG +F ++ YV QDD ++GTLTVRE + +SA LRLP
Sbjct: 90 DVLAARKDPRG-LSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLP 148
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
M EK + I E+GL AD+ +G RGISGGER+R SI +E++ P +LFL
Sbjct: 149 KAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFL 208
Query: 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
DEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK ++ G
Sbjct: 209 DEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGP 268
Query: 279 TSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITT 338
A E+FA AG+ C NP+D FL IN D V +G + +++P ++
Sbjct: 269 AQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAVMLN-RGEQDHEANKTEEPSKR--E 325
Query: 339 AEAIKNLIDFYQTSQ---HSYAAKEKVEGISKVKG-TVLDAGGSQASFLMQAFTLTKRSF 394
I+NL +FY S + A +++ K KG + SF Q + +RSF
Sbjct: 326 KPIIENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSF 385
Query: 395 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF 454
N+ + +L++ V++ + IG +Y + + R F+ F S+
Sbjct: 386 KNLLGNPQASVAQLIVTVILGLIIGALYFGLKNDPTGMQNRAGVFFFLTTNQCFTSVSAV 445
Query: 455 PSFVEDMKVFQRERLNGHYGVTAFVIGNTLSA-MPFLIMITFISGTICYFMVRLHPGFIH 513
FV + K+F E ++G+Y V+++ G +S +P + + I I YFM+ L
Sbjct: 446 ELFVVEKKLFIHEYISGYYRVSSYFFGKLVSDLLPMRFLPSVIYTCILYFMLGLKRTVEA 505
Query: 514 YLFFVLCLYASVAVVESLMMAIAS 537
+ + L S+ +AIA+
Sbjct: 506 FFIMMFTLIMVAYTASSMALAIAA 529
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 171/503 (33%), Positives = 265/503 (52%), Gaps = 22/503 (4%)
Query: 50 ARLTWKDLTVMVTLSNG-------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL 102
A L++ D+ V + +G +L + G +PG L A++GP+G GKS+LLD L
Sbjct: 35 AVLSFHDICYRVKVKSGFLFCRKTVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDVL 93
Query: 103 SSRLASNAFLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
++R + LSG +L+NG +F + YV QDD ++GTLTVRE + +SA LRLP M
Sbjct: 94 AARKDPHG-LSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTM 152
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
EK + I E+GL AD+ +G +RG+SGGER+R SIA+E++ P +LFLDEP
Sbjct: 153 TNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEP 212
Query: 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
T+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ G+ ++ G
Sbjct: 213 TTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPARE 272
Query: 282 AFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEA 341
A +FA G+ C NP+D FL IN D V + + + ++P EK T
Sbjct: 273 ALGYFASIGYNCEPYNNPADFFLDVINGDSSAVVLS-RADRDEGAQEPEEPPEKDT--PL 329
Query: 342 IKNLIDFYQTSQHSYAAKEKVE------GISKVKGTVLDAGGSQASFLMQAFTLTKRSFV 395
I L FY S S+ KVE G K K +V SF Q +++RSF
Sbjct: 330 IDKLAAFYTNS--SFFKDTKVELDQFSGGRKKKKSSVYKEVTYTTSFCHQLRWISRRSFK 387
Query: 396 NMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFP 455
N+ + ++++ +++ + IG I+ ++ + I R F+ F S+
Sbjct: 388 NLLGNPQASVAQIIVTIILGLVIGAIFYDLKNDPSGIQNRAGVLFFLTTNQCFSSVSAVE 447
Query: 456 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSA-MPFLIMITFISGTICYFMVRLHPGFIHY 514
V + K+F E ++G+Y V+++ G LS +P ++ + I I YF++ L P +
Sbjct: 448 LLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPAVGSF 507
Query: 515 LFFVLCLYASVAVVESLMMAIAS 537
+ L S+ +AIA+
Sbjct: 508 FIMMFTLMMVAYSASSMALAIAA 530
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| 255569405 | 705 | ATP-binding cassette transporter, putati | 0.974 | 0.770 | 0.909 | 0.0 | |
| 32364696 | 705 | ABC transporter [Gossypium hirsutum] | 0.992 | 0.784 | 0.886 | 0.0 | |
| 225454545 | 705 | PREDICTED: ABC transporter G family memb | 0.974 | 0.770 | 0.900 | 0.0 | |
| 147773147 | 716 | hypothetical protein VITISV_006943 [Viti | 0.974 | 0.758 | 0.900 | 0.0 | |
| 356559983 | 706 | PREDICTED: ABC transporter G family memb | 0.976 | 0.770 | 0.872 | 0.0 | |
| 449469450 | 696 | PREDICTED: ABC transporter G family memb | 0.958 | 0.767 | 0.889 | 0.0 | |
| 356531001 | 707 | PREDICTED: ABC transporter G family memb | 0.976 | 0.769 | 0.869 | 0.0 | |
| 224118648 | 698 | white-brown-complex ABC transporter fami | 0.953 | 0.760 | 0.86 | 0.0 | |
| 22329638 | 703 | ABC transporter G family member 11 [Arab | 0.958 | 0.759 | 0.856 | 0.0 | |
| 297844740 | 703 | abc transporter family protein [Arabidop | 0.958 | 0.759 | 0.854 | 0.0 |
| >gi|255569405|ref|XP_002525670.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535106|gb|EEF36788.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/544 (90%), Positives = 523/544 (96%), Gaps = 1/544 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+ AA++ +MEIEASKPAGN ++V LSPLSET+W+EK NTE GDVSARLTWKDLTVM
Sbjct: 1 MRN-AANHTMMEIEASKPAGNGMLVAALSPLSETLWREKTNTELVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET NVLEGLTGYAEPG+LTALMGPSGSGKSTLLDALSSRLA+NAFLSGTILLNG
Sbjct: 60 VTLSNGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE+S+DPLEKITTAEAI+ L+++Y+TSQ+ YAA+E
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFESSEDPLEKITTAEAIRTLVNYYRTSQYYYAARE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIY+VVT+CIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYIVVTVCIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 480
IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI
Sbjct: 420 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 479
Query: 481 GNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP 540
NT+SAMPFLIMITFISGTICYFMVRLHPGF HYLFFVLCLYASV VVESLMMAIASIVP
Sbjct: 480 SNTISAMPFLIMITFISGTICYFMVRLHPGFEHYLFFVLCLYASVTVVESLMMAIASIVP 539
Query: 541 NFLM 544
NFLM
Sbjct: 540 NFLM 543
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32364696|gb|AAP80385.1| ABC transporter [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/553 (88%), Positives = 522/553 (94%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR S ++ +MEI+A+KPAG +VVGGLSPLSET+W+EK +TE GDVSARLTW+DLTVM
Sbjct: 1 MRTSPSNTAMMEIQANKPAGTGMVVGGLSPLSETLWREKTDTELMGDVSARLTWEDLTVM 60
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNG T VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA+NAFLSGTILLNG
Sbjct: 61 VTLSNGATQKVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNG 120
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPWS KR LVE TIIEMGLQ
Sbjct: 121 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDTMPWSAKRDLVEGTIIEMGLQ 180
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 181 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 240
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIAS+HQPSSEVFELFD+LYLLS GKT+YFG+ S A+EFFAQAGFPCPALRNPS
Sbjct: 241 SRDGRTVIASVHQPSSEVFELFDQLYLLSEGKTIYFGQASEAYEFFAQAGFPCPALRNPS 300
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEKITT EAI+ LI+FY+TS YAAKE
Sbjct: 301 DHFLRCINSDFDKVKATLKGSMKLRFEASDDPLEKITTTEAIRTLINFYRTSHQCYAAKE 360
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KV+ ISKV+GTVLD+GGSQASFLMQ++TLTKRSFVNMSRDFGYYWLRL+IYVVVT+CIGT
Sbjct: 361 KVDEISKVRGTVLDSGGSQASFLMQSYTLTKRSFVNMSRDFGYYWLRLLIYVVVTVCIGT 420
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 480
IYLN+GT YNSILARG+CASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI
Sbjct: 421 IYLNIGTSYNSILARGACASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 480
Query: 481 GNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP 540
GNTLSAMPFLIMITFISGTICYFMVRLHPGF HY+FFVLCLYASV VVESLMMAIASIVP
Sbjct: 481 GNTLSAMPFLIMITFISGTICYFMVRLHPGFEHYMFFVLCLYASVTVVESLMMAIASIVP 540
Query: 541 NFLMGIITGAGIQ 553
NFLMGIITGAGIQ
Sbjct: 541 NFLMGIITGAGIQ 553
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454545|ref|XP_002262619.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera] gi|297737190|emb|CBI26391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/544 (90%), Positives = 517/544 (95%), Gaps = 1/544 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+SA +N +MEIEASKP VVGGLSPLSET+WKE+ +TEF GDVSARLTWKDLTVM
Sbjct: 1 MRNSA-NNAMMEIEASKPPAMGYVVGGLSPLSETLWKERTDTEFVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG+ILLNG
Sbjct: 60 VTLSNGETQKVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGSILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM WSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMRWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCP LRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPTLRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKE
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 480
IYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI
Sbjct: 420 IYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 479
Query: 481 GNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP 540
NT+SAMPFLI+ITFISGT+CYFMV LHPGF+HYLFFVLCLYASV VVESLMMAIAS++P
Sbjct: 480 SNTISAMPFLILITFISGTVCYFMVHLHPGFLHYLFFVLCLYASVTVVESLMMAIASVIP 539
Query: 541 NFLM 544
NFLM
Sbjct: 540 NFLM 543
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773147|emb|CAN69297.1| hypothetical protein VITISV_006943 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/544 (90%), Positives = 517/544 (95%), Gaps = 1/544 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+SA +N +MEIEASKP VVGGLSPLSET+WKE+ +TEF GDVSARLTWKDLTVM
Sbjct: 1 MRNSA-NNAMMEIEASKPPAMGYVVGGLSPLSETLWKERTDTEFVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG+ILLNG
Sbjct: 60 VTLSNGETQKVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGSILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM WSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMRWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCP LRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPTLRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKE
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 480
IYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI
Sbjct: 420 IYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI 479
Query: 481 GNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP 540
NT+SAMPFLI+ITFISGT+CYFMV LHPGF+HYLFFVLCLYASV VVESLMMAIAS++P
Sbjct: 480 SNTISAMPFLILITFISGTVCYFMVHLHPGFLHYLFFVLCLYASVTVVESLMMAIASVIP 539
Query: 541 NFLM 544
NFLM
Sbjct: 540 NFLM 543
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559983|ref|XP_003548275.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/549 (87%), Positives = 518/549 (94%), Gaps = 5/549 (0%)
Query: 1 MRDS-AASNVIMEIEASKPA---GNSIVVGGLSPLSETIWKEKINT-EFSGDVSARLTWK 55
MR+S A ++ MEIEA++P+ G++I + GLSPLSET+W+EK NT E GDVSARLTWK
Sbjct: 1 MRNSEAPTHGGMEIEATRPSAGNGSTITLPGLSPLSETLWREKANTAEIIGDVSARLTWK 60
Query: 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT 115
DLTVMVTLSNGET NVLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSGT
Sbjct: 61 DLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGT 120
Query: 116 ILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
ILLNG K KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPW++KR LVE TI+
Sbjct: 121 ILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTIV 180
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQ
Sbjct: 181 AMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQ 240
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPA 295
TLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S A+EFFAQAGFPCPA
Sbjct: 241 TLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPA 300
Query: 296 LRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHS 355
LRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAEAI+ LIDFY+TSQHS
Sbjct: 301 LRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHS 360
Query: 356 YAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVT 415
YAA++KV+ ISKVKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VVT
Sbjct: 361 YAARQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVT 420
Query: 416 ICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV 475
+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV
Sbjct: 421 VCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV 480
Query: 476 TAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 535
T+FVI NTLSAMPFLI+ITF+SGTICYFMVRLHPGF HYLFFVLCLYASV VVESLMMAI
Sbjct: 481 TSFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAI 540
Query: 536 ASIVPNFLM 544
ASIVPNFLM
Sbjct: 541 ASIVPNFLM 549
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469450|ref|XP_004152433.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] gi|449524820|ref|XP_004169419.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/534 (88%), Positives = 500/534 (93%)
Query: 11 MEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHN 70
MEIEASK GN V GLSPLSET+W+EK NTE GDVSARLTWKDLTVMV+LSNGE
Sbjct: 1 MEIEASKSTGNGAVAIGLSPLSETLWREKTNTEIVGDVSARLTWKDLTVMVSLSNGEVQK 60
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG KTKLSFG A
Sbjct: 61 VLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGRKTKLSFGAA 120
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
AYVTQDDNLIGTLTVRETI+YSARLRLPDKMPW EKR L+E TIIEMGLQDCADTVIGNW
Sbjct: 121 AYVTQDDNLIGTLTVRETIAYSARLRLPDKMPWEEKRALIESTIIEMGLQDCADTVIGNW 180
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
HLRGISGGE+RRVSIA+EILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSRDGRTVIAS
Sbjct: 181 HLRGISGGEKRRVSIAIEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIAS 240
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSD 310
IHQPSSEVFELFD+LYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDHFLRCINSD
Sbjct: 241 IHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSD 300
Query: 311 FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG 370
FDKVKATLKGSMKL+FE+SDDPLE+ITTAEA++ LIDFY++SQH YAA EKVE ISK KG
Sbjct: 301 FDKVKATLKGSMKLRFESSDDPLERITTAEAMRTLIDFYRSSQHCYAALEKVEEISKYKG 360
Query: 371 TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN 430
TVLD GGSQASF MQAFTLTKRSF+NMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN
Sbjct: 361 TVLDLGGSQASFFMQAFTLTKRSFINMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN 420
Query: 431 SILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFL 490
SILARGSCASFVFGFVTFMSIGGFPSF EDMKVF RERLNGHYGV +FVI NT+SAMPFL
Sbjct: 421 SILARGSCASFVFGFVTFMSIGGFPSFAEDMKVFHRERLNGHYGVGSFVISNTISAMPFL 480
Query: 491 IMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLM 544
++ITF+SGTICYFMVRLHPGF HYLFFVLCLYASV VVESLMMAIAS+VPNFLM
Sbjct: 481 LLITFLSGTICYFMVRLHPGFEHYLFFVLCLYASVTVVESLMMAIASVVPNFLM 534
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531001|ref|XP_003534067.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/550 (86%), Positives = 516/550 (93%), Gaps = 6/550 (1%)
Query: 1 MRDSAASNV--IMEIEAS-KPAGN--SIVVGGLSPLSETIWKEKINT-EFSGDVSARLTW 54
MR+S A +MEIEA+ +P+GN + + GLSPLSET+W+EK NT E GDVSARLTW
Sbjct: 1 MRNSEAPTHGGMMEIEATTRPSGNGSTTTLPGLSPLSETLWREKANTAEIIGDVSARLTW 60
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDLTVMVTLSNGET NVLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG
Sbjct: 61 KDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSG 120
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
TILLNG K KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPW++KR LVE TI
Sbjct: 121 TILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTI 180
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
+ MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVT
Sbjct: 181 VAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVT 240
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
QTLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S A+EFFAQAGFPCP
Sbjct: 241 QTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCP 300
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQH 354
ALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAEAI+ LIDFY+TSQH
Sbjct: 301 ALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQH 360
Query: 355 SYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVV 414
SYAA++KV+ IS+VKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VV
Sbjct: 361 SYAARQKVDEISRVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVV 420
Query: 415 TICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYG 474
T+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYG
Sbjct: 421 TVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYG 480
Query: 475 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 534
VT+FVI NTLSAMPFLI+ITF+SGTICYFMVRLHPGF HYLFFVLCLYASV VVESLMMA
Sbjct: 481 VTSFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMA 540
Query: 535 IASIVPNFLM 544
IASIVPNFLM
Sbjct: 541 IASIVPNFLM 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118648|ref|XP_002331414.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222873628|gb|EEF10759.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/550 (86%), Positives = 508/550 (92%), Gaps = 19/550 (3%)
Query: 2 RDSAASNVIMEIEASKPAG-------NSIVVGGLSPLSETIWKEKINTEFSGDVSARLTW 54
R+ + + VIMEIEAS P+G + VVGGLSPLSET+W+++ +TEF GDVSARLTW
Sbjct: 3 RNPSPNKVIMEIEASIPSGIVEGIAVDGTVVGGLSPLSETLWRDRTSTEFVGDVSARLTW 62
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDLTVMVTL +GET NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA+NAFLSG
Sbjct: 63 KDLTVMVTLGSGETQNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAANAFLSG 122
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
T+LLNG KTKLSFGTAAYVTQDDNL+GTLTVRETIS+SARLRLPDKMPWSEKR LVE TI
Sbjct: 123 TVLLNGRKTKLSFGTAAYVTQDDNLLGTLTVRETISFSARLRLPDKMPWSEKRALVESTI 182
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
IEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVT
Sbjct: 183 IEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVT 242
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
QTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF AGFPCP
Sbjct: 243 QTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF------------AGFPCP 290
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQH 354
ALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDP+EKITTAEAI++LI +Y+TSQ+
Sbjct: 291 ALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPIEKITTAEAIRSLIGYYRTSQY 350
Query: 355 SYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVV 414
YAA+EKVE ISKVKG VL++GGS+ASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VV
Sbjct: 351 CYAAREKVEEISKVKGDVLESGGSRASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVV 410
Query: 415 TICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYG 474
T+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVE+MKVFQRERLNGHYG
Sbjct: 411 TVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYG 470
Query: 475 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 534
V AFVI NT+SAMPFLIMITFISGT+CYFMVRLHPGF HYLFFVLCL+ASV VVESLMMA
Sbjct: 471 VIAFVISNTISAMPFLIMITFISGTVCYFMVRLHPGFEHYLFFVLCLFASVTVVESLMMA 530
Query: 535 IASIVPNFLM 544
IASIVPNFLM
Sbjct: 531 IASIVPNFLM 540
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329638|ref|NP_173226.2| ABC transporter G family member 11 [Arabidopsis thaliana] gi|75330766|sp|Q8RXN0.1|AB11G_ARATH RecName: Full=ABC transporter G family member 11; Short=ABC transporter ABCG.11; Short=AtABCG11; AltName: Full=Protein CUTICULAR DEFECT AND ORGAN FUSION 1; AltName: Full=Protein DESPERADO; AltName: Full=Protein PERMEABLE LEAVES 1; AltName: Full=White-brown complex homolog protein 11; Short=AtWBC11 gi|19423992|gb|AAL87274.1| putative ABC transporter protein [Arabidopsis thaliana] gi|23297574|gb|AAN12898.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332191521|gb|AEE29642.1| ABC transporter G family member 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/542 (85%), Positives = 498/542 (91%), Gaps = 8/542 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGN 482
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI N
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIAN 480
Query: 483 TLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 542
TLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNF
Sbjct: 481 TLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNF 540
Query: 543 LM 544
LM
Sbjct: 541 LM 542
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844740|ref|XP_002890251.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297336093|gb|EFH66510.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/542 (85%), Positives = 498/542 (91%), Gaps = 8/542 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+A+LKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRASLKGSMKLRFEASDDPLEKITTAEAIRVLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGN 482
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI N
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIAN 480
Query: 483 TLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 542
TLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNF
Sbjct: 481 TLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNF 540
Query: 543 LM 544
LM
Sbjct: 541 LM 542
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.974 | 0.772 | 0.858 | 2.1e-251 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.901 | 0.726 | 0.599 | 1.4e-165 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.901 | 0.730 | 0.607 | 3e-165 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.908 | 0.746 | 0.540 | 5.4e-150 | |
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.899 | 0.686 | 0.4 | 7.6e-96 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.502 | 0.483 | 0.406 | 1.2e-75 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.502 | 0.483 | 0.406 | 1.2e-75 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.488 | 0.343 | 0.428 | 6e-72 | |
| UNIPROTKB|Q9UNQ0 | 655 | ABCG2 "ATP-binding cassette su | 0.820 | 0.697 | 0.366 | 3.7e-70 | |
| UNIPROTKB|F1PG82 | 658 | ABCG2 "Uncharacterized protein | 0.845 | 0.715 | 0.337 | 2.1e-68 |
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2421 (857.3 bits), Expect = 2.1e-251, P = 2.1e-251
Identities = 473/551 (85%), Positives = 507/551 (92%)
Query: 11 MEIEASK-----PA---GNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ P G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGN 482
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI N
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIAN 480
Query: 483 TLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 542
TLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNF
Sbjct: 481 TLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNF 540
Query: 543 LMGIITGAGIQ 553
LMGII GAGIQ
Sbjct: 541 LMGIIIGAGIQ 551
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
Identities = 304/507 (59%), Positives = 398/507 (78%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S+G T +L+ L GYAEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 23 AYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 82
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRLP M E
Sbjct: 83 NVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSD 142
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++LFLDEPTSGLDSA
Sbjct: 143 IVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSA 202
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VYFGE +A EFFA+
Sbjct: 203 SAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAE 262
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNLI 346
+GFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+ L+
Sbjct: 263 SGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPLMNLATSVIKARLV 321
Query: 347 DFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVNMSRDFGYYW 405
+ Y+ S+++ +AK ++ +S ++G ++ GS+A++ Q TLT RSF+NM RD GYYW
Sbjct: 322 ENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYW 381
Query: 406 LRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQ 465
R++ Y+VV+I +GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKVF
Sbjct: 382 TRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFY 441
Query: 466 RERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASV 525
+ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+ PGF HY FF L ++ SV
Sbjct: 442 KERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSV 501
Query: 526 AVVESLMMAIASIVPNFLMGIITGAGI 552
+V+ESLMM +AS+VPNFLMG+ITGAG+
Sbjct: 502 SVIESLMMVVASVVPNFLMGLITGAGL 528
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 309/509 (60%), Positives = 397/509 (77%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S G T +L+GL G+AEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 22 AYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 81
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRL + E
Sbjct: 82 NVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVND 141
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSGLDSA
Sbjct: 142 IVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSA 201
Query: 229 AAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+AFFV Q LR ++RDG RTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+ A EFFA
Sbjct: 202 SAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFA 261
Query: 288 QAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNL 345
+AGFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+E L
Sbjct: 262 EAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEIKARL 320
Query: 346 IDFYQTSQHSYAAKEKVEGISKVKGTV-LDAG-GSQASFLMQAFTLTKRSFVNMSRDFGY 403
++ Y+ S ++ +AK ++ ++ ++G ++ GS+A++ Q TLTKRSFVNM RD GY
Sbjct: 321 VENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGY 380
Query: 404 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
YW R+VIY+VV+ C+GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKV
Sbjct: 381 YWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440
Query: 464 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 523
F +ERL+G+YGV+ ++I N +S+ PFL+ I I+G+I Y MV+ PG H+ FF L ++
Sbjct: 441 FYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFF 500
Query: 524 SVAVVESLMMAIASIVPNFLMGIITGAGI 552
SV+V+ESLMM +AS+VPNFLMG+ITGAGI
Sbjct: 501 SVSVIESLMMVVASLVPNFLMGLITGAGI 529
|
|
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 281/520 (54%), Positives = 379/520 (72%)
Query: 52 LTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
+ W+DLTV++ G T +L G+ G EP + A+MGPSGSGKSTLLDAL+ RLA N
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+SG +L+NG K +L FG AAYVTQ+D L+GTLTVRE+ISYSA LRLP K+ E +V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
E TI +MGL++C+D IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSGLDSA+A
Sbjct: 130 EATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASA 189
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
FFV Q LR ++ G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE +A +FF +AG
Sbjct: 190 FFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAG 249
Query: 291 FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---F------ETSD--DPLEKITTA 339
FPCP+ RNPSDHFLRC+NSDFD V A L S ++ F ET++ DPL+ I TA
Sbjct: 250 FPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTA 309
Query: 340 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVNMS 398
E L+ ++ S ++ A++ +++ I+ + G V + GSQ ++ Q LT+RSF+NMS
Sbjct: 310 EIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFINMS 369
Query: 399 RDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFV 458
RD GYYW+R+ +Y+V++IC+G+I+ NVG + ++++ +C F+ GF+TFMSIGGF SF+
Sbjct: 370 RDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFI 429
Query: 459 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFV 518
E+MKVF RERLNGHYGV + + N LS++PF+I++ + +I +MVR G H+ +
Sbjct: 430 EEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNC 489
Query: 519 LCLYASVAVVESLMMAIASIVPNFLMGIITGAG-IQVSVL 557
L L ++ VES MM IAS+VPNFLMG++ GAG I + VL
Sbjct: 490 LDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVL 529
|
|
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 204/510 (40%), Positives = 319/510 (62%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
A + WKDLTV + + V++ GYA PGT+T +MGP+ SGKSTLL AL+ RL +
Sbjct: 112 ASIAWKDLTVTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPS 171
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
A + G + +NG K+ + +G+ +V ++ LIG+LTVRE + YSA L+LP + +KR++
Sbjct: 172 AKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQKRSV 229
Query: 170 VERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
VE I M L D A+ +IG + +++G+ GERRRVSIA E++MRP +LF+DEP LDS
Sbjct: 230 VEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSV 289
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+A + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A + F+
Sbjct: 290 SALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 349
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF 348
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AI+ L
Sbjct: 350 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQD---DNGDFSAVNMDTAVAIRTLEAT 406
Query: 349 YQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408
Y++S + + + + +++ +GT L + G +A + LT RS + MSR++ YYWLRL
Sbjct: 407 YKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKYYWLRL 465
Query: 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRE 467
++Y+++T+ IGT+Y +G +S+ R + A FVF F + + I G PS ++++K+++ E
Sbjct: 466 ILYMILTLSIGTLYSGLGHSLSSVATRVA-AVFVFVSFASLLGIAGIPSLLKEIKIYRSE 524
Query: 468 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAV 527
N H G F++G L ++PFL +++ S + YFMV L F ++FVL + + V
Sbjct: 525 ASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLV 584
Query: 528 VESLMMAIASIVPNFLMGIITGAGIQVSVL 557
E LM+ IA I + +T + V ++
Sbjct: 585 NEGLMLFIACIWRDVYWSTLTLISVHVIMM 614
|
|
| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 120/295 (40%), Positives = 184/295 (62%)
Query: 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAF 111
+W ++++ TL NG+T +L+ + G G + A+MGPSG GKSTLL+ L+ R + ++
Sbjct: 7 SWSNISL--TLQNGKT--ILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSST 62
Query: 112 LSGTILLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
L G I +N + L+ ++YV Q+D+LIG+LTV ET+ YSA+ DK + K+ L
Sbjct: 63 LEGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQFAGIDK---AHKKEL 119
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V +TI +GL+ A + IG +GISGG++RRVSIA +I+ P +LFLDEPTSGLDS A
Sbjct: 120 VSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVA 179
Query: 230 AFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+ V T++ ++ R+ +I SIHQPS+ FELFD++ LS G+TVY G S ++F
Sbjct: 180 SREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNS 239
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 343
G P NP+++ L IN+DF + L + K+ + D + K+ T E+++
Sbjct: 240 IGHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVS-KWNSGD--VHKVGT-ESVQ 290
|
|
| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 120/295 (40%), Positives = 184/295 (62%)
Query: 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAF 111
+W ++++ TL NG+T +L+ + G G + A+MGPSG GKSTLL+ L+ R + ++
Sbjct: 7 SWSNISL--TLQNGKT--ILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSST 62
Query: 112 LSGTILLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
L G I +N + L+ ++YV Q+D+LIG+LTV ET+ YSA+ DK + K+ L
Sbjct: 63 LEGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQFAGIDK---AHKKEL 119
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V +TI +GL+ A + IG +GISGG++RRVSIA +I+ P +LFLDEPTSGLDS A
Sbjct: 120 VSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVA 179
Query: 230 AFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+ V T++ ++ R+ +I SIHQPS+ FELFD++ LS G+TVY G S ++F
Sbjct: 180 SREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNS 239
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 343
G P NP+++ L IN+DF + L + K+ + D + K+ T E+++
Sbjct: 240 IGHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVS-KWNSGD--VHKVGT-ESVQ 290
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 122/285 (42%), Positives = 185/285 (64%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMVTLSN-GE----THNVLEGLTGYAEPGTLTALMGPS 91
K K + F + ++KD+ V ++ G+ + +L + G+ E GT+ A+MGPS
Sbjct: 101 KNKKRSTFKNRID--FSFKDINHYVQITEKGKKKKISKQILTNINGHIESGTIFAIMGPS 158
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETI 149
G+GK+TLLD L+ RL N SGT+ LNG+K+ + YVTQ D+L+ +LTVRET+
Sbjct: 159 GAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETL 216
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH--LRGISGGERRRVSIAL 207
++ A+L++P +P EK V+ I EMGL CADT++G +RGISGGERRRV+I++
Sbjct: 217 NFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISI 276
Query: 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267
E+L P ++ LDEPTSGLD++ +F+V L+ L++ GRT+I +IHQP S ++++FD L L
Sbjct: 277 ELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLL 336
Query: 268 LSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFD 312
L G T+Y+G+ + A E+F G+ C NP+D FL IN+ +
Sbjct: 337 LGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVE 381
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| UNIPROTKB|Q9UNQ0 ABCG2 "ATP-binding cassette sub-family G member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 175/477 (36%), Positives = 257/477 (53%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGAPRPANFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRL M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKVKATLKGSMKLK--FETS--DDPL-EKITTAEAIKNLIDFYQTSQ---HSYAAKEK 361
D V + K E S D PL EK+ AE N FY+ ++ H + EK
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKQDKPLIEKL--AEIYVNS-SFYKETKAELHQLSGGEK 357
Query: 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
K K TV SF Q ++KRSF N+ + ++++ VV+ + IG I
Sbjct: 358 -----KKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAI 412
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIG 481
Y + I R F+ F S+ FV + K+F E ++G+Y V+++ +G
Sbjct: 413 YFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFLG 472
Query: 482 NTLS-AMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 537
LS +P ++ + I I YFM+ L P + + L S+ +AIA+
Sbjct: 473 KLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAA 529
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| UNIPROTKB|F1PG82 ABCG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 163/483 (33%), Positives = 261/483 (54%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 66 ILTNINGVMRPG-LNAILGPTGGGKSSLLDVLAARKDPHG-LSGDVLINGAPRPANFKCN 123
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRLP M EK + + I ++GL AD+ +G
Sbjct: 124 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSHEKNERINKVIQQLGLDKVADSKVGT 183
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S GRT+I
Sbjct: 184 QFIRGVSGGERKRTSIGMELITDPAILFLDEPTTGLDSSTANAVLLLLKRMSEQGRTIIF 243
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ GK ++ G A FFA G+ C NP+D FL IN
Sbjct: 244 SIHQPRYSIFKLFDSLTLLAAGKLMFHGPAQEALGFFASVGYHCEPYNNPADFFLDVING 303
Query: 310 DFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV- 368
D V + + + + +++P ++ T I+ + +FY S KE+++ +SK
Sbjct: 304 DSSAVVLN-REDQEGEVKVTEEPSKRGTPF--IERIAEFYANSDFCRKTKEELDQLSKSQ 360
Query: 369 --KGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG 426
K + SF Q ++KRSF N+ + ++++ V++ + +G I+ ++
Sbjct: 361 KRKSSAFKEITYATSFCQQLKWISKRSFKNLLGNPQASIAQIIVTVILGLVLGAIFYDLK 420
Query: 427 TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLS- 485
I R F+ F S+ V + K+F E ++G+Y V+++ G LS
Sbjct: 421 NDSTGIQNRSGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLSD 480
Query: 486 AMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMG 545
+P ++ + I I YF++ L P + FF++ + + MA+A ++
Sbjct: 481 LLPMRMLPSIIFTCIIYFLLGLKP--VVEAFFIMMFTLMMVAYSASSMALAIAAGQSVVS 538
Query: 546 IIT 548
I T
Sbjct: 539 IAT 541
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RXN0 | AB11G_ARATH | No assigned EC number | 0.8560 | 0.9587 | 0.7596 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00013847001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (697 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 557 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-122 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-82 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-78 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-74 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-73 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-62 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-61 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-54 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-47 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-45 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-29 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-27 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-27 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-26 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-26 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-25 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-25 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-25 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-24 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-24 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-24 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-24 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-24 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-23 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-22 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-22 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-22 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-22 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-21 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-21 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-21 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-20 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-20 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-20 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-20 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-19 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-19 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-18 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-18 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-17 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-17 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 8e-17 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-16 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-16 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-16 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-16 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-16 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-16 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-16 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-15 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-15 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-15 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-14 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-14 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-14 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-13 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-13 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-13 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-13 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-12 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-12 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-12 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 8e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-11 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 9e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-10 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-09 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-09 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 9e-09 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-09 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-08 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 8e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-05 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 8e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-05 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 1e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-04 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 4e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-04 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 7e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 0.001 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.003 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.004 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.004 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-122
Identities = 169/529 (31%), Positives = 265/529 (50%), Gaps = 38/529 (7%)
Query: 31 LSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGP 90
L+ + + + D S + L H +L+ ++G A+PG L A+MG
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKH-LLKNVSGVAKPGELLAVMGS 59
Query: 91 SGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--AYVTQDDNLIGTLTVRET 148
SG+GK+TL++AL+ R SG++LLNG A AYV QDD I TLTVRE
Sbjct: 60 SGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN-WHLRGISGGERRRVSIAL 207
+ + A LR+P ++ EKR V+ + +GL+ CA+T IG ++G+SGGER+R++ A
Sbjct: 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179
Query: 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267
E+L P LLF DEPTSGLDS A+ V Q L+ L++ G+T+I +IHQPSSE+FELFD++ L
Sbjct: 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239
Query: 268 LSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFE 327
++ G+ Y G A FF+ G PCP NP+D +++ +
Sbjct: 240 MAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL-------------------- 279
Query: 328 TSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG------GSQAS 381
+ P + + E I+ + D + S S G ++ G AS
Sbjct: 280 -AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS 338
Query: 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 441
+ Q + L KRS++++ RD +RL+ ++ I IG IYL G +
Sbjct: 339 WWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GA 395
Query: 442 VFGFVTFM----SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFIS 497
+F F+T M F ++ VF RE +G Y V+A+ + T++ +P I++ +
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455
Query: 498 GTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGI 546
+I Y+M+ L G H+L F+ + V S I+ + M +
Sbjct: 456 TSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMAL 504
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 1e-82
Identities = 167/486 (34%), Positives = 259/486 (53%), Gaps = 34/486 (6%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL 125
+ +L G+TG A PG + A++GPSGSGKSTLL+AL+ R+ N F +GTIL N K TK
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF-TGTILANNRKPTKQ 137
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
+VTQDD L LTVRET+ + + LRLP + EK + E I E+GL C +T
Sbjct: 138 ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+IGN +RGISGGER+RVSIA E+L+ P LL LDEPTSGLD+ AA+ + TL L++ G+
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
T++ S+HQPSS V+++FD + +LS G+ ++FG+ S A +F GF NP+D L
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLD 317
Query: 306 CINS--DFDKVKATLKGSMKLKFETSDDPL--EKITTAEAIKNLIDFYQTSQHSYAAKEK 361
N D V K ++K S + L K+ A + + S + KE
Sbjct: 318 LANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEH 377
Query: 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
+ +Q S L+Q +L +R + + LR+ + + G +
Sbjct: 378 RSSDR----ISISTWFNQFSILLQR-SLKER------KHESFNTLRVFQVIAAALLAGLM 426
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSI--GGFPS------FVEDMKVFQRERLNGHY 473
+ + + + + R G + F+SI G FPS F ++ +F +ER +G Y
Sbjct: 427 WWH--SDFRDVQDR-------LGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMY 477
Query: 474 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMM 533
++++ + + +P +++ I T+ Y+M L P +L +L L V V + L +
Sbjct: 478 TLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGL 537
Query: 534 AIASIV 539
A+ + +
Sbjct: 538 ALGAAI 543
|
Length = 659 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 243 bits (624), Expect = 4e-78
Identities = 108/232 (46%), Positives = 142/232 (61%), Gaps = 41/232 (17%)
Query: 49 SARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
L++++LTV V S ++ +L+ ++G A+PG LTA+MGPSG+GKSTLL+AL+ R
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 108 SNAFLSGTILLNGHKTKL-SFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+ +SG +L+NG SF YV QDD L TLTVRET+ ++A
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA------------ 107
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
LRG+SGGER+RVSIALE++ P LLFLDEPTSGL
Sbjct: 108 -------------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
DS++A V LR L+ GRT+I SIHQPSSE+FELFD+L LLS G+ +YFG
Sbjct: 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 7e-74
Identities = 146/511 (28%), Positives = 234/511 (45%), Gaps = 52/511 (10%)
Query: 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
W++LT V + E +L + G+ +PGTLTALMG SG+GK+TLL+ L+ R+ +
Sbjct: 762 WRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 114 GTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
G L+NG SF + YV Q D + T TVRE++ +SA LR P + SEK VE
Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-FLDEPTSGLDSAAAF 231
I + ++ AD V+G G++ +R+R++I +E++ +P+LL FLDEPTSGLDS A+
Sbjct: 881 VIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSAAF----EFF 286
+ + +R L+ G+ ++ +IHQPS+ +FE FDRL LL GG+TVYFG+ +F
Sbjct: 940 SICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYF 999
Query: 287 AQAGFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNL 345
+ G P CP NP++ L I + A A ++
Sbjct: 1000 EKHGAPKCPEDANPAEWMLEVIGAA--------------------------PGAHANQDY 1033
Query: 346 IDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQ---ASFLMQAFTLTKRSFVNMSR 399
+ ++ S A K +++ + D AS Q + R+F R
Sbjct: 1034 HEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWR 1093
Query: 400 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSIL-ARGSCASFVFGFVTFMSIGGFPSFV 458
Y + + + + + IG + VGT + + F + P FV
Sbjct: 1094 TPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQ-QYLPPFV 1152
Query: 459 EDMKVFQ-RERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL-----HPGFI 512
+++ RER + + AF+ +P+ ++ I I Y+ V G +
Sbjct: 1153 AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQV 1212
Query: 513 HYLFFVLCLY--ASVAVVESLMMAIASIVPN 541
H + L +L + S PN
Sbjct: 1213 HERGVLFWLLSTMFFLYFSTLGQMVISFNPN 1243
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 1e-73
Identities = 102/212 (48%), Positives = 138/212 (65%), Gaps = 12/212 (5%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----HKTKL 125
+L ++ + E G + A++G SGSGK+TLLDA+S R+ SG IL NG + +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
AYV QDD L+ LTVRET++Y+A LRLP K + ++ VE ++ L+D A T
Sbjct: 82 CV---AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE----DVLLRDLALT 134
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
IG ++GISGGERRRVSIA+++L P++L LDEPTSGLDS A + TL L+R R
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI +IHQP S++F LFDR+ LLS G+ VY G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 3e-62
Identities = 93/229 (40%), Positives = 129/229 (56%), Gaps = 41/229 (17%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
LTWK+L V G +L ++GY +PGTLTALMG SG+GK+TLLD L+ R +
Sbjct: 3 VLTWKNLNYTV-PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-G 60
Query: 111 FLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
++G IL+NG +F + YV Q D LTVRE + +SA LR
Sbjct: 61 VITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------------- 107
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
G+S +R+R++I +E+ +P +LFLDEPTSGLDS A
Sbjct: 108 ------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL-SGGKTVYFG 277
A+ + + L+ L+ G+ ++ +IHQPS+ +FE FDRL LL GGKTVYFG
Sbjct: 144 AYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 8e-61
Identities = 135/518 (26%), Positives = 219/518 (42%), Gaps = 43/518 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHK----TKL 125
+L+ + G +PG LT ++G GSG STLL ++S + + G I +G K
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-------DKMPWSEKRTLVERTIIEMG 178
G Y + D LTV ET+ ++AR + P + +++ V G
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YG 193
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L +T +GN +RG+SGGER+RVSIA L ++ D T GLDSA A + +R
Sbjct: 194 LSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL---EFIR 250
Query: 239 CLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
L T + +I+Q S + +ELFD++ +L G +YFG A ++F + GF CP
Sbjct: 251 ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNL---IDFYQT 351
+ +D FL + S + G K T + + L ID Y
Sbjct: 311 DRQTTAD-FLTSLTS--PAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLD 367
Query: 352 SQHSYAAKEKVE--GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLV 409
KE ++K + SF MQ R+F+ M + + +
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVF 427
Query: 410 IYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERL 469
+++ + + +++ N+ + +RG F F F S+ S E + ++ R
Sbjct: 428 GNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRK 487
Query: 470 NGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPG----FIHYLFFVLC----- 520
Y +A I + +S +PF I+ + + I YFMV F + L +C
Sbjct: 488 YALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMS 547
Query: 521 -LYASVAVVE---SLMMAIASIVPNFLMGIITGAGIQV 554
L+ S+ V S M A+I+ + I TG I
Sbjct: 548 HLFRSIGAVTKTLSEAMTPAAILL-LALSIYTGFAIPR 584
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 1e-54
Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 17/236 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T G L+G++ EPG + L+GP+G+GK+TLL L+ L SG IL+ G
Sbjct: 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLG 66
Query: 121 HKTKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ YV Q+ +L LTVRE + + ARL + E +E +
Sbjct: 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLEL 123
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
GL+D A+ + R +SGG ++R+SIAL +L P LL LDEPTSGLD + + +
Sbjct: 124 FGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 237 LRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
LR L+++G T++ S H E EL DR+ +L+ GK + G E F G
Sbjct: 179 LRELAKEGGVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 7e-47
Identities = 145/489 (29%), Positives = 230/489 (47%), Gaps = 47/489 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFG- 128
+L +TG PG LTALMG SG+GK+TL+D L+ R + ++ G I ++G K + +F
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFAR 953
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+ Y Q+D +TVRE++ YSA LRLP ++ EK V+ + + L + D ++G
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG 1013
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+ G+S +R+R++IA+E++ P ++F+DEPTSGLD+ AA V +T+R GRTV+
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073
Query: 249 ASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI 307
+IHQPS ++FE FD L L+ GG+ +Y G P RN I
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSG----------------PLGRNSHK-----I 1112
Query: 308 NSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF---YQTSQHSYAAKEKVEG 364
F+ + K +K K+ + LE + A +K IDF Y++S K V+
Sbjct: 1113 IEYFEAIPGVPK--IKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKE 1170
Query: 365 ISKVKGTVLDAGGSQASFLMQAFTLTKRSFVN-MSRDFGYYW-------LRLVIYVVVTI 416
+S G S F Q T F + + + + YW +R + +
Sbjct: 1171 LS-----TPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAAL 1225
Query: 417 CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF----PSFVEDMKVFQRERLNGH 472
+GTI+ VGT ++ ++ V F+ I P + VF RER G
Sbjct: 1226 MVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285
Query: 473 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLM 532
Y + I + +P++++ T I Y MV + +F + S
Sbjct: 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYG 1345
Query: 533 MAIASIVPN 541
M S+ PN
Sbjct: 1346 MMTVSLTPN 1354
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-45
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 36/215 (16%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
+L+ +G +PG + ++G GSG STLL AL++R N + G I NG K
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 128 ----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
G YV+++D TLTVRET+ ++ R +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------- 111
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
GN +RGISGGER+RVSIA ++ R +L D T GLDS+ A + + +R ++
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
T S++Q S E+++LFD++ +L G+ +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 3e-39
Identities = 92/280 (32%), Positives = 151/280 (53%), Gaps = 41/280 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFG 128
+L+ +G +P +T L+GP SGK+TLL AL+ +L + +SG I NG++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLR---------------------LPDK------- 160
T+AY++Q+D +G +TV+ET+ +SAR + P+
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 161 ---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217
M + + + T+ +GL C DT++G+ +RGISGG+++RV+ I+ + LF
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKT 273
+DE ++GLDS+ + Q ++CL + TV+ S+ QP+ E F+LFD + LLS G+
Sbjct: 360 MDEISTGLDSSTTY---QIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 274 VYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDK 313
VY G EFF GF CP + +D FL+ + S D+
Sbjct: 417 VYQGPRDHILEFFESCGFKCPERKGTAD-FLQEVTSKKDQ 455
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-35
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---- 120
L+ ++ + G ++GP+GSGKSTLL L+ L SG +L++G
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLT 66
Query: 121 -HKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
K V Q+ D+ TV E +++ +P E VE + +G
Sbjct: 67 KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVG 123
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L+ D L SGG+++RV+IA + M P +L LDEPT+GLD A + + L+
Sbjct: 124 LEGLRDRSPF--TL---SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK 178
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L +G+T+I H + EL DR+ +L GK
Sbjct: 179 KLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-33
Identities = 78/248 (31%), Positives = 110/248 (44%), Gaps = 21/248 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ L+ G +T ++GP+GSGKSTLL L+ L SG +LL+G S
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIA-SLSPK 72
Query: 131 ------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK-RTLVERTIIEMGLQDCA 183
AYV Q + LTV E + L S++ +VE + +GL+ A
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D + +SGGER+RV IA + +L LDEPTS LD A V + LR L+R+
Sbjct: 133 DRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF--EFFAQA-GFPCPALRNP 299
G TV+ +H + D L LL GK V G E + G + +P
Sbjct: 188 KGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADVIEDP 246
Query: 300 SDHFLRCI 307
I
Sbjct: 247 DSGKPVVI 254
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 4e-32
Identities = 70/219 (31%), Positives = 105/219 (47%), Gaps = 23/219 (10%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK- 122
GE L+G++ E G A++GPSGSGKSTLL+ L SG + ++G
Sbjct: 12 GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDI 68
Query: 123 TKLSFG--------TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+KLS +V Q NL+ LT E + L +P E+R E +
Sbjct: 69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELL 125
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
+GL D + +SGG+++RV+IA + P+++ DEPT LDS V
Sbjct: 126 ERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 235 QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ LR L+++ G T++ H P E+ E DR+ L GK
Sbjct: 181 ELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-32
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
T ++ L+ G + L+G +G+GK+T L L+ L SGT +NG+ +
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDR 70
Query: 128 GTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y Q D L LTVRE + + ARL+ +P SE + VE + +GL D A
Sbjct: 71 KAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKA 127
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ +SGG +R++S+A+ ++ P +L LDEPTSGLD A+ + + + R
Sbjct: 128 NKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RK 181
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
GR++I + H E L DR+ ++S GK G
Sbjct: 182 GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 26/235 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTIL 117
++ L+ ++ E G L+GP+GSGKSTLL L N L SG +L
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL------NGLLKPTSGEVL 62
Query: 118 LNGHKTKLSFGTAA------YVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
++G T V Q+ D+ + TV + +++ +P E V
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERV 119
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +GL++ D +SGG+++RV+IA + M P +L LDEPT+GLD
Sbjct: 120 AEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + L+ L + G+T+I H V E DR+ +L GK + G+ + F
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-30
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 58/205 (28%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ + G + AL+GP+GSGKSTLL A++ L SG IL++G
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGK------ 61
Query: 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
D + +R I Y
Sbjct: 62 --------DIAKLPLEELRRRIGY------------------------------------ 77
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
+ +SGG+R+RV++A +L+ P LL LDEPTSGLD A+ + + LR L+ +GRTV
Sbjct: 78 ----VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV 133
Query: 248 IASIHQPSSEVFELFDRLYLLSGGK 272
I H P DR+ +L GK
Sbjct: 134 IIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-30
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
+DLTV + H VLE ++ +PG A++GP+G+GKSTLL A+ L SG
Sbjct: 3 EDLTV--SYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAI---LGLLKPTSG 54
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEK-RTLVE 171
+I + G + YV Q ++ ++VR+ + S+ + V+
Sbjct: 55 SIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD 114
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ +GL + AD IG +SGG+++RV +A ++ P LL LDEP +G+D
Sbjct: 115 EALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + LR L R+G T++ H V E FDR+ LL+ V G
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRTV-VASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 43/218 (19%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+++ G VL+ L+ E G + ++GP+G+GKSTLL L+ L SG ILL+G
Sbjct: 5 LSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GL--LKPSSGEILLDG 60
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
S S + + K V + + +GL
Sbjct: 61 KDLA-------------------------SLSPKEL-------ARKIAYVPQALELLGLA 88
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
AD +SGGER+RV +A + P +L LDEPTS LD A + + LR L
Sbjct: 89 HLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 241 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+R+ G+TV+ +H + DR+ LL G+ V G
Sbjct: 144 ARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-29
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 52/209 (24%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ E G + L+GP+G+GK+TL+ + L + SG I + G K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEP 68
Query: 128 GTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
Y+ ++ +L LTVRE + S
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKLS------------------------------- 97
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
GG ++R+++A +L P LL LDEPTSGLD + + LR L ++
Sbjct: 98 -------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G+T++ S H E L DR+ +L+ G+
Sbjct: 145 GKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 9e-29
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 27/229 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T S G VL+G+ G + A++GPSGSGKSTLL + L + SG +L++G
Sbjct: 6 LTKSFGGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDG 61
Query: 121 HK-TKLS----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ LS G + Q L +LTV E +++ LR ++ E R +
Sbjct: 62 EDISGLSEAELYRLRRRMG---MLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREI 116
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL+ D +SGG ++RV++A + + P LL DEPT+GLD A
Sbjct: 117 VLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171
Query: 230 AFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + +R L ++ G T I H F + DR+ +L GK V G
Sbjct: 172 SGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-28
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-- 121
GE L+ + E G A++GPSGSGKSTLL+ L L SG +L+NG
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT--SGEVLINGKDL 69
Query: 122 -------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
KL +V Q+ NL+ LTV E + + ++ E +
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELL 126
Query: 175 IEMGLQDCADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+GL+D +SGG+++RV+IA ++ P+++ DEPT LDS A V
Sbjct: 127 EVLGLED-----RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ LR L+++ G+T+I H P E+ + DR+ L GK
Sbjct: 182 LELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
++LTV + N VLE ++ E G +TAL+GP+G+GKSTLL A+ L + SG
Sbjct: 8 ENLTV--SYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SG 59
Query: 115 TILLNGHKTK--LSFGTAAYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLV 170
I + G + YV Q ++ + +TV++ + L K W +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL----LGRYGKKGWFRRLNKK 115
Query: 171 ERTIIE-----MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
++ ++ +G++D D IG L SGG+++RV +A + P LL LDEP +G+
Sbjct: 116 DKEKVDEALERVGMEDLRDRQIG--EL---SGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
D A + L+ L ++G+TV+ H V FDR+ L+ + G
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNRHL-IASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127
L+G++ PG + L+GP+G+GK+TL+ L++ + SGTI ++G
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ Q+ + TVRE + Y A L+ +P E + V+ + + L D A
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK 127
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
IG +SGG RRRV IA ++ P +L +DEPT+GLD L L D R
Sbjct: 128 IG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RI 181
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI S H +V L +++ +L+ GK V+ G
Sbjct: 182 VILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-27
Identities = 65/213 (30%), Positives = 90/213 (42%), Gaps = 57/213 (26%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--- 121
G VL+ ++ +PG A++GPSGSGKSTLL L RL SG IL++G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDP--TSGEILIDGVDLR 67
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ AYV QD L T+RE I
Sbjct: 68 DLDLESLRKNIAYVPQDPFLFSG-TIRENI------------------------------ 96
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+SGG+R+R++IA +L P +L LDE TS LD + + LR
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L G+TVI H+ S+ DR+ +L G+
Sbjct: 142 L-AKGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-27
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILL 118
++ + G L+ L+ EPG AL+GPSG GK+TLL ++ R S G IL+
Sbjct: 6 LSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS-----GEILI 59
Query: 119 NG--------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+G + + V QD L LTV E I++ +LR +P +E R V
Sbjct: 60 DGRDVTGVPPERRNI-----GMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARV 111
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +GL+ + +SGG+++RV++A + P LL LDEP S LD+
Sbjct: 112 RELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + L+ L R+ G T I H E L DR+ +++ G+ V G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-26
Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-- 128
VL+GL AE G + AL+G +G+GKSTLL L+ L SG +L++G S
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 129 -----TAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQD 181
V QD D+ + V + +++ L L + +E V + +G
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE----AEVERRVREALTAVGASG 119
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ H +SGGE++RV+IA + MRP +L LDEPT+GLD A + LR L
Sbjct: 120 LRERPT---HC--LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 242 RDGRTVIASIH 252
+G TV+ S H
Sbjct: 175 AEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
VLE + E G A++GPSG GKSTLL ++ L SG +LL+G
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA-GLEKPT--SGEVLLDGRPVTGPG 71
Query: 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
YV Q+D L+ LTV + ++ LR +E R + + +GL D
Sbjct: 72 PDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK-- 126
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT------QTLRCLS 241
+ +SGG R+RV+IA + RP+LL LDEP LD+ +T + LR
Sbjct: 127 ---YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA-----LTREELQDELLRLWE 178
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
+TV+ H E L DR+ +LS
Sbjct: 179 ETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILL 118
+ + G+ H L+ ++ G +TAL+GPSG GKSTLL L + L A G +LL
Sbjct: 6 LNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64
Query: 119 NGHKTKLSFGTA-------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
+G V Q N ++ + ++Y RL K
Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-------IKLKEEL 116
Query: 172 RTIIEMGLQDCA--DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+E L+ A D V H G+SGG+++R+ +A + P +L LDEPTS LD +
Sbjct: 117 DERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS 176
Query: 230 AFFVTQTLRCLSRDGRTVIAS--IHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ + + L ++ VI + + Q + DR L G+ V FG T
Sbjct: 177 TAKIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 27/221 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ S + +L+ L+ G + AL G +G+GK+TL L+ + + SG+ILLNG
Sbjct: 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNG 61
Query: 121 HKTKLS--FGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
K + YV QD D + T +VRE + L L + E + ++
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREEL----LLGLKEL---DAGNEQAETVLKDL 114
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L + H +SGG+++R++IA +L LL DEPTSGLD V + +
Sbjct: 115 DLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 238 RCLSRDGRTVIASIHQPSSEVFELF----DRLYLLSGGKTV 274
R L+ G+ VI H +E DR+ LL+ G V
Sbjct: 170 RELAAQGKAVIVITHD-----YEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL---- 125
L+ ++ PG + L+GP+G+GK+TL + +S L SG++L +G T L
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHE 71
Query: 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM----PWSEKRTLVERT 173
+F Q L LTV E + +A+ R + E+R ER
Sbjct: 72 IARLGIGRTF-------QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERA 124
Query: 174 --IIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
++E +GL D AD G +S G++RR+ IA + P+LL LDEP +GL+
Sbjct: 125 EELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ + +R L G TV+ H V L DR+ +L G+
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGR 220
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-25
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNG 120
G LE ++ E G AL+GPSG GKSTLL ++ SG +L++G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA------GLERPTSGEVLVDG 65
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
YV Q D L+ LTV + ++ L+ +P +E R E + +GL
Sbjct: 66 EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLS 122
Query: 181 DCADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT--- 236
+ +SGG R+RV++A + + P +L LDEP S LD+ T
Sbjct: 123 GFEN------AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA-------LTREQ 169
Query: 237 -----LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
L G+TV+ H E L DR+ +LS
Sbjct: 170 LQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 67/220 (30%), Positives = 98/220 (44%), Gaps = 29/220 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+++ L ++ PG AL+GPSG+GKSTLL+ L G+I +NG
Sbjct: 327 VSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL-GFVDPT--EGSIAVNG 383
Query: 121 HKT-----KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
A+V Q L T+ E I RL PD + +
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENI----RLARPDA-----SDAEIREALE 433
Query: 176 EMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
GL + DT IG G+SGG+ +R+++A L LL LDEPT+ LD+
Sbjct: 434 RAGLDEFVAALPQGLDTPIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268
V + LR L++ GRTV+ H+ + L DR+ +L
Sbjct: 493 TEAEVLEALRALAQ-GRTVLLVTHRL--ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT S G+ +L+G+ G + A++G SGSGKSTLL + L G IL++G
Sbjct: 14 VTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLI---LGLLRPDKGEILIDG 69
Query: 121 HKTKLSFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
Y + Q L +LTV E +++ LR K+P S R LV
Sbjct: 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLM 127
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAF 231
+ +GL + + +SGG R+RV++A I + P LLFLDEPTSGLD +A
Sbjct: 128 KLELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G TVI H S + + DR+ +L+ GK + G
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 2e-24
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
G++ +L G++ G + AL+G +G+GK+TLL + L SG+I +G T
Sbjct: 11 GKSQ-ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITG 66
Query: 125 L-SFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT------LVERT 173
L A YV + + LTV E + A R K +R L ER
Sbjct: 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKER- 125
Query: 174 IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+SGGE++ ++IA ++ RP+LL LDEP+ GL
Sbjct: 126 ----------------RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ + +R L +G T++ + Q + E+ DR Y+L G+ V G +
Sbjct: 170 EIFEAIRELRDEGVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 13/211 (6%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ E G + L+GP+G+GK+T + + + + SG +L +G ++
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAA 68
Query: 128 GTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ ++ L + V + + Y A+L+ + E R ++ + + L + A+
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR 125
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S G +++V ++ P LL LDEP SGLD + +R L+R G+T
Sbjct: 126 V-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI S HQ V EL DR+ LL+ G+ V +G
Sbjct: 181 VILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----------HKTKLSFGTA 130
G L AL+GPSG+GKSTLL ++ +A G I LNG K+ F
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLAVRDRKVGF--- 81
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVIG 188
V Q L +TV + I++ ++R K SE R VE + + L+ AD
Sbjct: 82 --VFQHYALFPHMTVADNIAFGLKVR---KERPSEAEIRARVEELLRLVQLEGLADR--- 133
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTV 247
+ +SGG+R+RV++A + + P++L LDEP LD+ + + LR R G T
Sbjct: 134 --YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285
+ H E EL DR+ +L+ G+ G ++
Sbjct: 192 VFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 37/242 (15%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + L+ ++ PG AL+GPSG+GKSTLL L+ + SG++L++G
Sbjct: 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDG 62
Query: 121 HK-TKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
KL G A + Q NLI L+V E + RL + W L
Sbjct: 63 TDINKLK-GKALRQLRRQIGMIFQQFNLIERLSVLENVLSG---RLGRRSTWRSLFGLFP 118
Query: 172 RTIIEMGLQDCADTVIGNWHLRGI-----------SGGERRRVSIALEILMRPRLLFLDE 220
+ + L + V G+ SGG+++RV+IA ++ +P+L+ DE
Sbjct: 119 KEEKQRALA-ALERV-------GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
P + LD A++ V L+ ++R +G TVI S+HQ E DR+ L G+ V+ G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGPP 229
Query: 280 SA 281
+
Sbjct: 230 AE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 5e-24
Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 28/209 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---- 123
+L+ L E G + A++G SGSGKSTLL+ + L F SG + LNG +T
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEK--FDSGQVYLNGQETPPLN 66
Query: 124 ---KLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTII 175
F Y+ Q+ LI TV E L L K+ EKR + +
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEALE 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
++GL I +SGGE++RV++A IL P L+ DEPT LD V
Sbjct: 121 KVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDR 264
L L+ +G+T+I H P EV + DR
Sbjct: 176 LLLELNDEGKTIIIVTHDP--EVAKQADR 202
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 5e-24
Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 21/216 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTKL 125
+++G+ A PG+LT L+GP+GSGKSTLL L+ L +A GT+ L G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRA 72
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEMGLQD 181
A V QD + LTVR+ ++ R+P + W+ +V+R + L
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
AD + +SGGER+RV +A + P+LL LDEPT+ LD A +R L+
Sbjct: 130 LADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G TV+A++H + D + +L GG+ V G
Sbjct: 185 ATGVTVVAALHDLNLAA-SYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-23
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
VL+ ++ + + G + +GP+G+GK+T + + + + SG I +G + +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNI 68
Query: 128 GTAAYV---TQDDNLIGTLTVRETISYSARL-RLPDKMPWSEKRTLVERTIIEMGLQDCA 183
+ + LT RE + ARL + K ++ + +GL+D A
Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSA 120
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + L G ++R+ IAL +L P LL LDEPT+GLD + + + L
Sbjct: 121 KKKVKGFSL-----GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
G TV+ S H SE+ ++ DR+ +++ GK +
Sbjct: 176 GITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + L L + G LTAL+G SG+GKSTLL+ L LA G I +NG
Sbjct: 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNG 382
Query: 121 HK-TKLS----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM--PWSEKRTLVERT 173
LS ++V+Q+ + T+RE I AR D+ ++ L+E
Sbjct: 383 IDLRDLSPEAWRKQISWVSQN-PYLFAGTIRENILL-ARPDASDEEIIAALDQAGLLEFV 440
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
GL DTVIG G+SGG+ +R+++A +L LL LDEPT+ LD+ +
Sbjct: 441 PKPDGL----DTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
Q L+ L++ +TV+ H+ E DR+ +L G+ V
Sbjct: 496 LQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLV 533
|
Length = 559 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 5e-23
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 54/199 (27%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA------AYVT 134
G + AL+GPSGSGKSTLL ++ L SG+IL++G T L V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIA-GLEEPD--SGSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
QD L LTV E I+ G
Sbjct: 83 QDFALFPHLTVLENIAL------------------------------------------G 100
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQ 253
+SGG+++RV++A + M P +L LDEPTS LD V L+ L ++ G TV+ H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 254 PSSEVFELFDRLYLLSGGK 272
E L DR+ +L GK
Sbjct: 161 L-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-23
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------------HKTKLS 126
+T + G SG+GKSTLL ++ + GTI+LNG + K+
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQQRKI- 77
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q L L VRE +++ + + E R V+ + +GL
Sbjct: 78 ----GLVFQQYALFPHLNVRENLAFGLKRKRN-----REDRISVDELLDLLGLDH----- 123
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 245
+ N + +SGGE++RV++A + +P LL LDEP S LD A + L+ + ++
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI H SE L DR+ ++ G+ Y G
Sbjct: 184 PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129
+ ++ AE G +T L+G +G+GK+TLL +++ L + SG + ++G T
Sbjct: 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSF 72
Query: 130 A----AYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCAD 184
+ + L LT RE + Y ARL L K + R + L + D
Sbjct: 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE--IKARI--AELSKRLQLLEYLD 128
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
+G S G +++V+IA ++ P +L LDEPTSGLD ++ L +G
Sbjct: 129 RRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R VI S H EV L DR+ +L G+ V G
Sbjct: 184 RAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-22
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------V 133
G + A++GPSG+GKSTLL+ ++ SG IL+NG + +
Sbjct: 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHT---ASPPAERPVSML 76
Query: 134 TQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Q++NL LTV + I S L+L +E+R VE ++GL + G
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLN-----AEQREKVEAAAAQVGLAGFLKRLPGE-- 129
Query: 192 LRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249
+SGG+R+RV++A L+R + +L LDEP S LD A + + L + T++
Sbjct: 130 ---LSGGQRQRVALA-RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
H P + + DR+ L G+ G T E +
Sbjct: 186 VTHHP-EDAARIADRVVFLDNGRIAAQGSTQ---ELLSGKA 222
|
Length = 231 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-22
Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
L+ ++ PG AL+GP+G+GKSTL +L +RL G I + GH + + A
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQ--EGQISVAGHDLRRAPRAA 72
Query: 131 ----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q L L+VR+ + Y A L + +E R + + +GL + AD
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDK 129
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ R ++GG RRRV IA +L RP LL LDEPT GLD A+ +T +R L+RD
Sbjct: 130 V-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARD 181
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 13/202 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
LE ++ G L ++GPSG GK+TLL+ ++ + + G+I LNG + +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V Q++ L+ L V + +++ +LR +K ++R + + + +GL+ I W
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA---QRREIAHQMLALVGLEGAEHKYI--W 131
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249
L SGG R+RV IA + + P+LL LDEP LD+ + + L L ++ G+ V+
Sbjct: 132 QL---SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 250 SIHQPSSEVFELFDRLYLLSGG 271
H +F L RL +LS G
Sbjct: 189 ITHDIEEALF-LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-22
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
L +DL + G + GL+ G L GP+GSGK+TLL ++ L
Sbjct: 2 MLEGEDLACV---RGGRV--LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-- 54
Query: 111 FLSGTILLNGHKTKLS--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
+GTI L+G Y+ + + LTV E + + A +
Sbjct: 55 -AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-------GGEEL 106
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDS 227
+ + +GL A G +S G++RRV++A L + RP + LDEPT+ LD+
Sbjct: 107 DIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRP-IWILDEPTAALDA 160
Query: 228 AA-AFFVTQTLRCLSRDGRTVIASIHQP 254
AA A F L++ G VIA+ H P
Sbjct: 161 AAVALFAELIRAHLAQGG-IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------KTK 124
+ G++ G + L+GP+G+GK+T + L++ L SG + GH + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
G V QD ++ LT E + ARL +P +E+R ++ + +GL + AD
Sbjct: 73 RRIG---IVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAAD 126
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 243
++ + SGG RRR+ IA ++ RP +LFLDEPT GLD V + + L +
Sbjct: 127 RLVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G T++ + H E +L DR+ ++ G+ + G
Sbjct: 182 GMTILLTTHY-MEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-21
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123
++G++ +PG +T L+GP+G+GK+T L L+ L +A G ++G
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEA 76
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
+ G +V+ L LT RE + Y A L + E +E +G+++
Sbjct: 77 RRRLG---FVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELL 130
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D +G G S G R++V+IA ++ P +L LDEPT+GLD A + + +R L
Sbjct: 131 DRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G+ ++ S H EV L DR+ +L G+ VY G
Sbjct: 186 GKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 2e-21
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK 124
+VL+G+ + G + ++GPSGSGKSTLL ++ L SGTI+++G K K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEE--PDSGTIIIDGLKLTDDK 68
Query: 125 LSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ V Q NL LTV E I+ + M +E + ++GL
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLA 126
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
D AD +SGG+++RV+IA + M P+++ DEPTS LD V ++ L
Sbjct: 127 DKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181
Query: 241 SRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGK 272
+ +G T++ H+ F E+ DR+ + G+
Sbjct: 182 AEEGMTMVVVTHEMG---FAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 3/170 (1%)
Query: 384 MQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 442
Q L KR F+ RD RL+ +++ + GT++ N+ T + G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSI 60
Query: 443 FGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICY 502
G P F+ + V +RE + Y +A+V+ L +P ++ I I Y
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 503 FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 552
FMV L + F+L L + L + IA++ P+F G +
Sbjct: 121 FMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLL 168
|
Length = 210 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 3e-21
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L+G+ + G +L+G SG GKSTLL+ +S LA SG ++L G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPT--SGGVILEGKQITEPGPDRM 57
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
V Q+ +L+ LTVRE I+ + LPD + SE+R +VE I +GL + AD G
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPD-LSKSERRAIVEEHIALVGLTEAADKRPGQ-- 114
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIAS 250
+SGG ++RV+IA + +RP++L LDEP LD+ + ++ TV+
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGE 278
H + L DR+ +L+ G G+
Sbjct: 172 THDVDEALL-LSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-21
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 24/214 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------KTK 124
++G+ G + +GP+G+GK+T + L++ L SGT + G+ K +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 125 LSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
S G Y + D++L G RE + RL +P E E + L + A
Sbjct: 66 RSIGIVPQYASVDEDLTG----RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAA 118
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D +G SGG RRR+ IA ++ +P +LFLDEPT+GLD + +R L +
Sbjct: 119 DRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G T++ + H E +L DR+ ++ G+ + G
Sbjct: 174 GVTILLTTHY-MEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 60 MVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT 115
M+T+ N T VL+ ++ G +T+++GP+G+GKSTLL ++ SRL SG
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLK--KDSGE 57
Query: 116 ILLNGH-----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--DKMPWSEKRT 168
I ++G +K + + Q++++ LTVR+ + + R P E R
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRR 114
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
++ I + L+D +D +L +SGG+R+R IA+ + + LDEP + LD
Sbjct: 115 IINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 229 AAFFVTQTLRCLSRD-GRTVIASIH 252
+ + + LR L+ + G+T++ +H
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 9e-21
Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 56/251 (22%)
Query: 60 MVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
+ L N G VL+ + E G L+GPSG GKSTLL + A L
Sbjct: 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI-------AGLEE 54
Query: 113 --SGTILLNGHK-TKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
SG IL++G T L A V Q+ L +TV E I++ +LR +P +E
Sbjct: 55 PTSGEILIDGRDVTDLP--PEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAE 109
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
V+ +GL+ + N +SGG+R+RV++A ++ +P++ LDEP S L
Sbjct: 110 IDKRVKEVAKLLGLEH-----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 226 DSAAAFFVTQTLRCLSRDG-RTVIASIHQ--------PSSEVFE---LFDRLYLLSGGKT 273
D R R+ I +H+ + + E L DR+ +++ G+
Sbjct: 165 D------------AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
Query: 274 VYFGETSAAFE 284
G +E
Sbjct: 213 QQVGTPLELYE 223
|
Length = 338 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 47/227 (20%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTK- 124
+L+GL+ PG AL+G SG GKST++ +L R F SG ILL+G +
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLER-----FYDPTSGEILLDGVDIRD 69
Query: 125 --LSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---- 176
L + V+Q+ L T+ E I Y T E + E
Sbjct: 70 LNLRWLRSQIGLVSQEPVLFDG-TIAENIRYGK-----------PDATDEE--VEEAAKK 115
Query: 177 -------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
M L D DT++G RG +SGG+++R++IA +L P++L LDE TS LD+
Sbjct: 116 ANIHDFIMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA 172
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ V + L + GRT I H+ S+ D + +L G+ V
Sbjct: 173 ESEKLVQEALDRAMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVV 216
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 38/250 (15%)
Query: 60 MVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
M+ + N G+ VL+G++ E G + ++GPSGSGKSTLL L+ L SG
Sbjct: 2 MIEIKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN-GLEE--PDSG 57
Query: 115 TILLNGHKTKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR- 167
+I ++G V Q NL LTV E ++ + K+ +E R
Sbjct: 58 SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK--KLSKAEARE 115
Query: 168 ---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
L+E+ +GL D AD + +SGG+++RV+IA + M P+++ DEPTS
Sbjct: 116 KALELLEK----VGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGKTVYFGETSAA 282
LD V ++ L+ +G T+I H+ F E+ DR+ + GK + E
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMG---FAREVADRVIFMDQGKII---EEGPP 220
Query: 283 FEFFAQAGFP 292
EFF
Sbjct: 221 EEFFDNPKSE 230
|
Length = 240 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-20
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + L ++ + G L GPSG+GK+TLL L L + G + + G
Sbjct: 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAG 63
Query: 121 HKT-----------KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ G V QD L+ TV E ++ +R + +
Sbjct: 64 EDVNRLRGRQLPLLRRRIGV---VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR--- 117
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + ++GL+ AD +SGGE++RV+IA I+ P LL DEPT LD
Sbjct: 118 VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPS 255
+ + L+ L++ G TVI + H S
Sbjct: 173 SERILDLLKRLNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 3e-20
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 37/223 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+G++ PG + A++GP+G+GKSTLL ALS L+ + SG + LNG
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72
Query: 131 -----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE-RTIIE--MGLQDC 182
A + Q+ +L TV+E + +P R E I + D
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGR-------IPHRSGREPEEDERIAAQALAATDL 125
Query: 183 ADTVIGNWHLRG-----ISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAF 231
+ L G +SGGE++RV +A + R LFLDEPTS LD A
Sbjct: 126 S-------GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ R L+R+G V+A +H + + DR+ LL G+ +
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAA-QYADRIVLLHQGRVI 220
|
Length = 259 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 70/221 (31%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
+ VLE L+ PG A++G SGSGKSTLL L G ILL+G
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLN 538
Query: 125 LSFGTAA------YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT----- 173
A+ YV QD L ++RE I L P+ E +
Sbjct: 539 D-IDLASLRRQVGYVLQDPFLFSG-SIRENI----ALGNPE-ATDEEIIEAAQLAGAHEF 591
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
I + + DT +G +SGG+R+R+++A +L +P++L LDE TS LD +
Sbjct: 592 IENLPMG--YDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
Q L + GRTVI H+ S DR+ +L GK V
Sbjct: 649 LQNLLQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 6e-20
Identities = 78/226 (34%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G+ VL ++ G AL+GPSGSGKSTL++ L R SG IL++GH +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVD--SGRILIDGHDVR 67
Query: 125 LSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT----- 173
+ A V+QD L TV E I+Y R VE
Sbjct: 68 -DYTLASLRRQIGLVSQDVFLFND-TVAENIAYGRP---------GATREEVEEAARAAN 116
Query: 174 ---IIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
I M L + DTVIG RG+ SGG+R+R++IA +L P +L LDE TS LD+
Sbjct: 117 AHEFI-MELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ V L L ++ RT H+ S+ E DR+ +L GK V
Sbjct: 173 SERLVQAALERLMKN-RTTFVIAHRLST--IENADRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 7e-20
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 29/241 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L K+L+V + G + L+ ++ + G L+G SGSGKSTL A+ L
Sbjct: 2 LEVKNLSV-SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL-GLLKPT- 58
Query: 112 LSGTILLNGHK-TKLS-------FGTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKM 161
SG+I+ +G KLS V QD +L +T+ E I+ R+
Sbjct: 59 -SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLR----GISGGERRRVSIALEILMRPRLLF 217
+ K ++ + +G+ + L +SGG+R+RV+IA + + P+LL
Sbjct: 118 KEARKEAVLL---LLVGVGLPEE------VLNRYPHELSGGQRQRVAIARALALNPKLLI 168
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276
DEPTS LD + + L+ L + G T++ H V ++ DR+ ++ GK V
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEE 227
Query: 277 G 277
G
Sbjct: 228 G 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-20
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 96 STLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTA-----AYVTQDDNLIGTLTVRETI 149
STLL ++ L SGTILL+G T LS V QD L LTVRE +
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209
+ R E E + +GL D D +SGG+++RV+IA +
Sbjct: 58 FFGLRD--------KEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARAL 105
Query: 210 LMRPRLLFLDEPTS 223
L +P+LL LDEPT+
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-20
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS--FGTAAYVTQ 135
E G ++GP+GSGKS LL+ ++ + + SG ILLNG T L +YV Q
Sbjct: 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQ 78
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL--- 192
+ L +TV + I+Y + R DK +ER ++E+ ++G HL
Sbjct: 79 NYALFPHMTVYKNIAYGLKKRKVDKKE-------IERKVLEIA------EMLGIDHLLNR 125
Query: 193 --RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGGE++RV+IA +++ P++L LDEP S LD + + L+ + ++ +
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ E + L D++ ++ GK + G+ F+
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 8e-20
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 30/230 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGT 129
L ++ E G ++G SGSGKSTL L SG+ILL+G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLL---AGLEKPSSGSILLDGKPLAPKKRAK 78
Query: 130 AAY-----VTQDDNLIGTL----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
A Y V QD +L TV +S R P + S++R + + ++GL
Sbjct: 79 AFYRPVQMVFQDP--YSSLNPRRTVGRILSEPLR---PHGLSKSQQR--IAELLDQVGLP 131
Query: 181 DCADTVIGNWHLRGI---SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
++ R SGG+R+R++IA ++ P+LL LDEPTS LD + + L
Sbjct: 132 P-------SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
L ++ I + V + DR+ ++ G+ V G T +
Sbjct: 185 LELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125
VL+ ++ G A++GPSGSGKST+L RL + SG+IL++G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTIL-----RLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 126 -SFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDC 182
S A V QD L T+ I Y R D ++ + K + I M D
Sbjct: 71 DSLRRAIGVVPQDTVLFND-TIGYNIRY-GRPDATDEEVIEAAKAAQIHDKI--MRFPDG 126
Query: 183 ADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT++G RG +SGGE++RV+IA IL P +L LDE TS LD+ + LR +
Sbjct: 127 YDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV 183
Query: 241 SRDGRTVIASIHQPSS 256
S+ GRT I H+ S+
Sbjct: 184 SK-GRTTIVIAHRLST 198
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-19
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSFGTAAYVTQDDN 138
G+L AL+GPSGSGKSTLL ++ + SG I LNG + +V Q
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYA 82
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198
L LTVR+ I++ +R K ++ + VE + + L +G+ + +SGG
Sbjct: 83 LFKHLTVRDNIAFGLEIRKHPK---AKIKARVEELLELVQL-----EGLGDRYPNQLSGG 134
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258
+R+RV++A + + P++L LDEP LD+ + LR L + + E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304
E+ DR+ ++S GK Q G P +P++ F+
Sbjct: 195 MEVADRIVVMSNGKIE-------------QIGSPDEVYDHPANPFV 227
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 28/225 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKLSF 127
L+G+ AE G + AL+GP+G+GKSTL L N L SG +L+ G K
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLF------LHFNGILKPTSGEVLIKGEPIKYDK 70
Query: 128 G-------TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
T V Q+ D+ + TV E +++ L L EKR V+ + +G+
Sbjct: 71 KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP-LNLGLSKEEVEKR--VKEALKAVGM 127
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ + HL SGG+++RV+IA + M+P ++ LDEPTSGLD A + + L
Sbjct: 128 EGFENKP--PHHL---SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYD 182
Query: 240 LSRDGRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 283
L+++G T+I S H ++ ++ D++Y++S GK + G F
Sbjct: 183 LNKEGITIIISTHD--VDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
|
Length = 275 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-19
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 27/225 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HK 122
VL+ L+ E G L AL+G SG GK+TLL A++ A L+G I + HK
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
L A + Q+ L L V + +++ R + KMP ++ V + +GL D
Sbjct: 79 RGL-----ALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDA 130
Query: 183 ADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
A HL +SGG ++R++IA I + P +L LDEP S LD+ + + + L
Sbjct: 131 AA------HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184
Query: 242 RD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ T++ H + L D+ ++ G+ GE A ++
Sbjct: 185 EELPELTILCVTHD-QDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-------- 130
G + A++GPSG+GKSTLL +L+ + SG IL NG + TKL G
Sbjct: 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLK-GKELRKLRRDI 83
Query: 131 AYVTQDDNLIGTLTVRETI-----SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
+ Q NL+ L+V E + Y++ R + E + + +G+ D A
Sbjct: 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDG 244
+SGG+++RV+IA ++ +P+++ DEP + LD +A V L+ ++ DG
Sbjct: 144 RAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
TVI ++HQ + DR+ L G+ V+ G S
Sbjct: 199 ITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKLSF 127
++ ++ + G L+GPSG GK+TLL ++ F SG ILL+G +
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA------GFEQPSSGEILLDG---EDIT 70
Query: 128 GTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
V Q L +TV E +++ L++ K+ +E + VE + +GL+
Sbjct: 71 DVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG 128
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
AD +SGG+++RV++A ++ P++L LDEP S LD+ + + L+ L
Sbjct: 129 FADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 242 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
R+ G T + H E + DR+ +++ G+
Sbjct: 184 RELGITFVYVTH-DQEEALAMSDRIAVMNDGR 214
|
Length = 352 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-19
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL----ASNAFLSGTIL--LNGHK 122
L+ + PG A++GPSG+GKSTLL ++ RL + + L GT + L G K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKK 73
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETI-----SYSARLR-LPDKMPWSEKR---TLVERT 173
+ + Q NLI LTV E + Y R L + +K + +ER
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER- 132
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+GL D A +SGG+++RV+IA + +P L+ DEP + LD + V
Sbjct: 133 ---VGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 234 TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
L+ +++ DG TVI ++HQ + DR+ L G+ V+ G S
Sbjct: 185 MDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 3e-19
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + L ++ + G L GPSG+GKSTLL + G IL+NG
Sbjct: 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNG 63
Query: 121 H------KTKLSF-----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
H ++ F G V QD L+ TV E ++ R+ P E R
Sbjct: 64 HDLSRLKGREIPFLRRQIG---VVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRR 117
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL+ A + +SGGE++RV+IA I+ +P +L DEPT LD
Sbjct: 118 VSEVLDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
++ + + ++R G TV+ + H
Sbjct: 173 SWEIMRLFEEINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-19
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHKTKL-- 125
VL + PG + L GPSGSGK+TLL L S + + G L + +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
+ G Y+ Q NL+G LT R+ + + L+ + + E R + +GL D
Sbjct: 80 LRRNIG---YIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDH 134
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D ++ +SGG+++RV+IA ++ RP+L+ DEPT+ LDS + V + ++ L+R
Sbjct: 135 LD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 243 D-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ G T++ H + ++ DR+ + GK
Sbjct: 190 EQGCTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 3e-19
Identities = 68/240 (28%), Positives = 98/240 (40%), Gaps = 72/240 (30%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--------- 121
+L+ ++ PG + A++GP+G+GKSTLL ALS L+ + SG + LNG
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73
Query: 122 ----------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
+ LSF TV E + + P R +
Sbjct: 74 LARRRAVLPQHSSLSFP--------------FTVEEVV----AMGR---APHGLSRAEDD 112
Query: 172 RTIIE-MGLQDCADTVIGNWHLRG-----ISGGERRRVSIA------LEILMRPRLLFLD 219
+ + D A HL G +SGGE++RV +A E PR L LD
Sbjct: 113 ALVAAALAQVDLA-------HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 220 EPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH---QPSSEVFELF-DRLYLLSGGKTV 274
EPTS LD A V + R L+ + G VI +H + + DR+ LL G+ V
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVLLHQGRLV 220
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL------------S 126
PG + L+GP+G+GK+TL + ++ + SGT++ G T L +
Sbjct: 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIART 84
Query: 127 FGTAA---YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER--TIIE-MGLQ 180
F +T +N+ R +S K E+R ER ++E +GL
Sbjct: 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK----EEREARERARELLEFVGLG 140
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ AD GN +S G++RR+ IA + +P+LL LDEP +GL+ + + +R L
Sbjct: 141 ELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G I I V L DR+ +L+ G+
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------ 121
T N L+ ++ A+ G + +GP+G+GKST + ++ L + SG++ + G
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNP 70
Query: 122 -KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ + + G Y+ + + L + VRE + + A + M + VE I +GL+
Sbjct: 71 KEVQRNIG---YLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLR 124
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
IG +S G R+RV +A ++ P++L LDEPT+GLD + ++ +
Sbjct: 125 PEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+D +T+I S H EV + DR+ +++ GK V
Sbjct: 180 GKD-KTIILSTHI-MQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 7e-19
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
G+ L G++ E G + AL+G +G+GK+TLL + + SG I+ +G T
Sbjct: 14 GKIQ-ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG 69
Query: 125 L-SFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-- 177
L A AYV + + LTV E + DK + +E + E+
Sbjct: 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLL-LGAYARRDK---EAQERDLEE-VYELFP 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-- 235
L++ + G +SGGE++ ++IA ++ RP+LL LDEP+ GL A V +
Sbjct: 125 RLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIF 176
Query: 236 -TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
++ L ++G I + Q + E+ DR Y+L G+ V G +
Sbjct: 177 EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
|
Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 68/192 (35%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG- 128
VL+G++ PG A++GPSGSGKSTLL L+ L L G + L+G + L
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDE 406
Query: 129 ---TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---MGLQDC 182
+ QD +L T TVRE + RL PD E +ER + L D
Sbjct: 407 VRRRVSVCAQDAHLFDT-TVRENL----RLARPDATD-EELWAALERVGLADWLRALPDG 460
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
DTV+G +SGGER+R+++A +L +L LDEPT LD+ A + + L
Sbjct: 461 LDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAAL- 518
Query: 243 DGRTVIASIHQP 254
GRTV+ H
Sbjct: 519 SGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-18
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KT 123
VL+ ++ PG +TAL+GPSGSGKST++ L + G +LL+G +
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
K + V Q+ L ++++ I+Y + + + + I L
Sbjct: 84 KYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFI-SELASGY 140
Query: 184 DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
DT +G +G +SGG+++RV+IA ++ P++L LDE TS LD+ + V Q L
Sbjct: 141 DTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP 197
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
RTV+ H+ S+ E D++ +L GG+
Sbjct: 198 ER-RTVLVIAHRLST--VERADQILVLDGGR 225
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 23/223 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V S E VL+ + +PG A++GP+G+GK+TL++ L R G IL++G
Sbjct: 8 VNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLIN-LLMRFYDPQ--KGQILIDG 64
Query: 121 -------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
K+ S V QD L T+ E I R D+ E
Sbjct: 65 IDIRDISRKSLRS--MIGVVLQDTFLFSG-TIMENIRLG-RPNATDEE-VIEAAKEAGAH 119
Query: 174 IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
M L + DTV+G G +S GER+ ++IA +L P++L LDE TS +D+
Sbjct: 120 DFIMKLPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ + L L GRT I H+ S+ D++ +L GK +
Sbjct: 177 LIQEALEKL-MKGRTSIIIAHRLSTIKNA--DKILVLDDGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 65/211 (30%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 62 TLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTI 116
T+ GE ++L+G+ + G A++GPSGSGKSTLL L A L SG +
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVL-------AGLDDPSSGEV 67
Query: 117 LLNGH---------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEK 166
L G + L +V Q +LI LT E ++ LR +
Sbjct: 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA 127
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ L+E +GL H +SGGE++RV++A RP +LF DEPT L
Sbjct: 128 KALLEA----VGLGKRLT------HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177
Query: 226 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255
D A + L L+R+ G T++ H P
Sbjct: 178 DRATGDKIADLLFALNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 3e-18
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 43/229 (18%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHK 122
+ L+ ++ G A++G GSGKSTLL +L + + SG++LL+G
Sbjct: 13 PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-----KLLAGLYKPTSGSVLLDGTD 67
Query: 123 TKL--------SFGTAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
+ + G YV QD L GTL R+ I+ A P ++ ++
Sbjct: 68 IRQLDPADLRRNIG---YVPQDVTLFYGTL--RDNITLGA--------PLADDERILR-- 112
Query: 174 IIEM-GLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
E+ G+ D D IG RG+SGG+R+ V++A +L P +L LDEPTS +
Sbjct: 113 AAELAGVTDFVNKHPNGLDLQIGE-RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
D + + + LR L D +T+I H+PS + +L DR+ ++ G+ V
Sbjct: 172 DMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-18
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ S VL+ ++ EPG A++GPSGSGKSTL+ L RL SG IL++G
Sbjct: 334 VSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDP--TSGEILIDG 390
Query: 121 HKTKLSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ + V+QD L T+RE I+ +++ + K I
Sbjct: 391 IDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFI- 448
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L D DT++G +SGG+R+R++IA +L P +L LDE TS LD+ +
Sbjct: 449 -ANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L+ L GRT + H+ S+ + DR+ +L G+ V G
Sbjct: 507 ALKKL-LKGRTTLIIAHRLSTI--KNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 5e-18
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
A+ G L L+GP+G+GK+TLL A+ L GT+ + G + YV Q
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAI---LGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 139 LIGT--LTVRETISYSAR------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
++V T+ S R LR P ++ R + R +GL + AD +G
Sbjct: 60 FAWDFPISVAHTV-MSGRTGHIGWLRRPCVADFAAVRDALRR----VGLTELADRPVGE- 113
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGG+R+RV +A + RP +L LDEP +GLD +T+ L+ G ++ +
Sbjct: 114 ----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 251 IHQPSSEVFELFDRLYLLSG 270
H + + DR+ LL+G
Sbjct: 170 THDLAQAM-ATCDRVVLLNG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 5e-18
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-------TAAYV 133
G L+G SGSGKSTL L+ L + SG+I+ +G L+ G V
Sbjct: 316 EGETLGLVGESGSGKSTLARILA-GLLPPS--SGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 134 TQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
QD +L +TV + ++ LR+ +E+R V + +GL + +
Sbjct: 373 FQDPYSSLNPRMTVGDILAE--PLRIHGGGSGAERRARVAELLELVGL----PPEFLDRY 426
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+R+RV+IA + + P+LL LDEP S LD + V L+ L + I
Sbjct: 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285
+ V + DR+ ++ G+ V G T FE
Sbjct: 487 SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 7e-18
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 22/203 (10%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT---QDDN 138
G +TA++GPSGSGKSTLL+ ++ SG +L+NG + V+ Q++N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 139 LIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
L LTV + + S L+L +E R +E + +GL + G +S
Sbjct: 81 LFAHLTVEQNVGLGLSPGLKLT-----AEDRQAIEVALARVGLAGLEKRLPGE-----LS 130
Query: 197 GGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
GGER+RV++A +L+R + +L LDEP + LD A + + L + TV+ HQP
Sbjct: 131 GGERQRVALA-RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 255 SSEVFELFDRLYLLSGGKTVYFG 277
+ L R+ L G+ G
Sbjct: 190 -EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 9e-18
Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTKLSFGTAAYVTQ 135
G +T L+G +GSGKSTLL L + G ILL+ +K AY+ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQ 92
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPW--------SEKRTLVERTIIEMGLQDCADTVI 187
+TVRE ++ + PW + R VE I +GL+ A ++
Sbjct: 93 QLPAAEGMTVRELVAIG-------RYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV 145
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRT 246
+ +SGGER+R IA+ + R L LDEPTS LD A V + LS++ G T
Sbjct: 146 DS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
VIA +H + D L L GG+ + G +
Sbjct: 201 VIAVLHDINMAA-RYCDYLVALRGGEMIAQGTPAE 234
|
Length = 265 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 9e-18
Identities = 58/212 (27%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HK 122
G VL ++ EPG A++GPSGSGKSTL + L SG + L+G +
Sbjct: 12 GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQ 68
Query: 123 TKLS-FG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ G Y+ QDD L ++ E I
Sbjct: 69 WDPNELGDHVGYLPQDDELFSG-SIAENI------------------------------- 96
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+SGG+R+R+ +A + PR+L LDEP S LD + Q + L
Sbjct: 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G T I H+P E DR+ +L G+
Sbjct: 143 KAAGATRIVIAHRP--ETLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L L+ G + L+GP+G+GKSTLL ++ L SG+I G L +A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAG--QPLEAWSAA 65
Query: 131 ------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
AY++Q + V + ++ L PDK + + +GL D
Sbjct: 66 ELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLG 121
Query: 185 TVIGNWHLRGISGGERRRVSIALEIL-----MRP--RLLFLDEPTSGLDSAAAFFVTQTL 237
+ +SGGE +RV +A +L + P +LL LDEP + LD A + + L
Sbjct: 122 RSVNQ-----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
L + G V+ S H + DR++LL GK + G
Sbjct: 177 SELCQQGIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 24/216 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSF--GTAAYVTQ 135
G + +G +G+GKST L L+ L SG + +NG + + + + Q
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQ 105
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L L +++ L+L ++P E ++ + L+ W +R +
Sbjct: 106 KLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEG-----FLKWPVRKL 157
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF----FVTQTLRCLSRDGRTVIASI 251
S G+R R +A +L P++LFLDEPT GLD A F+ + TV+ +
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE---ERQATVLLTT 214
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
H ++ L DR+ L+ G+ V+ G + E F
Sbjct: 215 HI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 34/248 (13%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
++++ + T L+ ++ G + ++G SG+GKSTLL RL + L
Sbjct: 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLIN--LLER 57
Query: 113 --SGTILLNGHKTKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
SG++ ++G + Q NL+ + TV E +++ L +P
Sbjct: 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVP 114
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+E + V + +GL D AD +SGG+++RV+IA + P++L DE T
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETS 280
S LD + + L+ ++R+ G T++ H+ EV + DR+ +L G+ V E
Sbjct: 170 SALDPETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLV---EEG 224
Query: 281 AAFEFFAQ 288
E FA
Sbjct: 225 TVSEVFAN 232
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 20/243 (8%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLS 113
++LTV ++G + ++ EPG + ++G SGSGKSTL AL L S
Sbjct: 9 ENLTVEFA-TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 114 GTILLNGH---------KTKLSFGTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMP 162
G ++L+G KL A + QD +L +T+ + I + RL K
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH--GKGS 125
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+E R + ++GL D + H +SGG R+RV IA+ + ++P+LL DEPT
Sbjct: 126 RAEARKRAVELLEQVGLPD-PERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ LD + L+ L R+ G V+ H V EL DR+ ++ G+ V G T
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTEE 241
Query: 282 AFE 284
Sbjct: 242 ILS 244
|
Length = 539 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-17
Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT + L+G+ G L+GPSG+GKSTLL + SGTI +NG
Sbjct: 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNG 62
Query: 121 ------HKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ G V QD L+ V E ++++ L + P E R
Sbjct: 63 QDVSDLRGRAIPYLRRKIGV---VFQDFRLLPDRNVYENVAFA--LEVTGVPP-REIRKR 116
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL + +SGGE++RV+IA I+ P +L DEPT LD
Sbjct: 117 VPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
+ + L+ +++ G TV+ + H
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+ DL+V G+T VL+G+ G+L L+GP+G+GK+TLL A++ L A
Sbjct: 4 IDVSDLSV----EFGDT-TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA- 57
Query: 112 LSGTILLNGHKTKLSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
GT+L+ G + A A V QD +L VR+ + W+E
Sbjct: 58 --GTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTET 115
Query: 167 -RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
R VER + G+ AD + + +SGGER+RV +A + +L LDEPT+ L
Sbjct: 116 DRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIH 252
D + +R L DG+T +A+IH
Sbjct: 171 DINHQVRTLELVRRLVDDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 32/243 (13%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
K+++ + + G+ L+ ++ G + ++G SG+GKSTL+ ++ L
Sbjct: 5 KNVSKVFGDTGGKVT-ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN-------GLER 56
Query: 113 --SGTILLNGHK-TKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
SG++L++G T LS G + Q NL+ + TV E ++ + +
Sbjct: 57 PTSGSVLVDGTDLTLLS-GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI---AGV 112
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
P +E V + +GL+D AD +SGG+++RV IA + P++L DE
Sbjct: 113 PKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEA 167
Query: 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
TS LD + LR ++R+ G T++ H+ V + DR+ ++ G+ V G
Sbjct: 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTVE 226
Query: 281 AAF 283
F
Sbjct: 227 EVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-17
Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L ++L S GE + EGL+ G + GP+G GK+TLL L+ L
Sbjct: 1 LAARNLAC----SRGER-MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--- 52
Query: 112 LSGTILLNG---HKTKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR 167
SG + NG + + Y+ L L+ E + + A + +
Sbjct: 53 DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH-------GGAQ 105
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+E + +GL D +S G++RR+++A L R L LDEPT+ LD
Sbjct: 106 RTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQ--PSSEVFEL 261
A + LR G V+ + HQ E EL
Sbjct: 161 AGVALLAGLLRAHLARGGIVLLTTHQDLGLVEAREL 196
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 2e-17
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 28/231 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ + G++H +L G++ G +T ++G +G GK+TLL L L SG+I L+G
Sbjct: 6 LNVYYGQSH-ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDG 61
Query: 121 HK-TKLS-FGTA----AYVTQDDNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVER 172
TKL A AYV Q + LTV E + +A R K+P +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DE 113
Query: 173 TIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
I E+ L++ G+ +SGG++++++IA ++ RP+LL LDEPT G+ +
Sbjct: 114 -IYELFPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ + +R L +G I + Q EL DR Y++ G+ V G
Sbjct: 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 3e-17
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YV 133
+ G + AL+G +G+GKSTL+ L + SG I ++G + ++ A V
Sbjct: 28 KKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMV 84
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q L+ TLTV E I + + R ++ GL D + +
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD---- 140
Query: 194 GISGGERRRVSIALEILMR-PRLLFLDEPTSGL--DSAAAFFVTQTLRCLSRDGRTVIAS 250
+S GE++RV I L+ L R RLL LDEPT+ L A F + LR L+ +G+T+I
Sbjct: 141 -LSVGEQQRVEI-LKALYRGARLLILDEPTAVLTPQEADELF--EILRRLAAEGKTIIFI 196
Query: 251 IHQPSSEVFELFDRLYLLSGGKTV 274
H+ EV + DR+ +L GK V
Sbjct: 197 THK-LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-17
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 41/228 (17%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHK 122
G+ L+ ++ PG A++G GSGKSTLL +L + G++LL+G
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-----KLLLGLYQPTEGSVLLDGVD 528
Query: 123 TKL--------SFGTAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
+ + G YV QD L GTL R+ I+ A P+++ ++ R
Sbjct: 529 IRQIDPADLRRNIG---YVPQDPRLFYGTL--RDNIALGA--------PYADDEEIL-RA 574
Query: 174 IIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
G+ + D IG R +SGG+R+ V++A +L P +L LDEPTS +D
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ + L+ G+T++ H+ S + +L DR+ ++ G+ V
Sbjct: 634 NRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 5e-17
Identities = 74/256 (28%), Positives = 111/256 (43%), Gaps = 35/256 (13%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----- 123
H L + G + AL+GPSGSGKSTLL LS + + I L G
Sbjct: 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76
Query: 124 -----KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+ S Y+ Q NL+ L+V E + A P W + R +
Sbjct: 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP---FWRTCFSWFTREQKQRA 133
Query: 179 LQDCADTVIGNWH-----LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
LQ A T +G H + +SGG+++RV+IA ++ + +++ DEP + LD +A V
Sbjct: 134 LQ--ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 234 TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 292
TLR +++ DG TV+ ++HQ +R+ L G Y G +S F+
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ-VDYALRYCERIVALRQGHVFYDG-SSQQFD-------- 241
Query: 293 CPALRNPSDHFLRCIN 308
DH R IN
Sbjct: 242 ----NERFDHLYRSIN 253
|
Length = 262 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 42/212 (19%)
Query: 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------------HKTKLSFGTA 130
TA+ G SGSGK+TL+ ++ + G I+LNG K ++
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPEKRRIG---- 78
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
YV Q+ L L+VR + Y + P + S +R +IE+ +G
Sbjct: 79 -YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER------VIEL---------LGIG 122
Query: 191 HL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
HL +SGGE++RV+I +L PRLL +DEP + LD + + L L +
Sbjct: 123 HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG 182
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
I + EV L DR+ +L G+ G
Sbjct: 183 IPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 21/248 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASN 109
L K+L+V G ++G++ + G + ++G SGSGKS L A+ L +
Sbjct: 2 LEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 110 AFLSGTILLNGH-KTKLS-------FGTA-AYVTQD--DNLIGTLTVRETISYSARLRLP 158
+ G IL +G LS G A + QD +L +T+ + I+ RL
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLF 217
+ E + + +G+ D + + ++ H +SGG R+RV IA+ + + P+LL
Sbjct: 121 -GLSKKEAKERAIELLELVGIPD-PERRLKSYPH--ELSGGMRQRVMIAMALALNPKLLI 176
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276
DEPT+ LD + L+ L R+ G +I H V E+ DR+ ++ G+ V
Sbjct: 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEE 235
Query: 277 GETSAAFE 284
G F+
Sbjct: 236 GPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-17
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------H 121
V++GL+ + + G L+GP+G+GK+T L L +A G+I L G
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRAR 76
Query: 122 KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQ 180
+ G V Q DNL TVRE + R + + R LV ++E L+
Sbjct: 77 HARQRVGV---VPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVP-PLLEFAKLE 129
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ AD +G +SGG +RR+++A ++ P +L LDEPT+GLD A + + LR L
Sbjct: 130 NKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
G+T++ + H E L DRL ++ G+ + G A E
Sbjct: 185 LARGKTILLTTHF-MEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-17
Identities = 63/247 (25%), Positives = 95/247 (38%), Gaps = 49/247 (19%)
Query: 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI 116
L + G L+ G +TAL GPSGSGK++L++ ++ + G I
Sbjct: 2 LELNFRQRLGNFA--LDANFTLPARG-ITALFGPSGSGKTSLINMIAGLTRPD---EGRI 55
Query: 117 LLNG--------------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
LNG K ++ YV QD L TVR + Y
Sbjct: 56 ELNGRVLVDAEKGIFLPPEKRRI-----GYVFQDARLFPHYTVRGNLRY---------GM 101
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLF 217
W R ++ + +G++ HL +SGGE++RV+I +L P LL
Sbjct: 102 WKSMRAQFDQLVALLGIE----------HLLDRYPGTLSGGEKQRVAIGRALLTAPELLL 151
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+DEP + LD + L L + I + EV L DR+ +L GK G
Sbjct: 152 MDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 278 ETSAAFE 284
+
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-17
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
P +TAL+GPSGSGKSTLL +++ + L ++G+I+ NGH +
Sbjct: 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI---YSPRTDTVDLRK 86
Query: 139 LIGT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
IG +++ E + Y RL+ + DK E VE+++ + D +
Sbjct: 87 EIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE---AVEKSLKGASIWDEVKDRLH 143
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR--T 246
+ L G+SGG+++RV IA + P+++ LDEPTS LD +A + +TL L D
Sbjct: 144 DSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLL 202
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
V S+ Q S + DR G + + +T F
Sbjct: 203 VTRSMQQAS----RISDRTGFFLDGDLIEYNDTKQMF 235
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 9e-17
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 62 TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121
T+ G +L L+ G +TAL+GP+G GKSTLL +RL SGT+ L
Sbjct: 9 TVGYGTK-RILNDLSLSLPTGKITALIGPNGCGKSTLLKCF-ARL--LTPQSGTVFLGDK 64
Query: 122 ----------KTKLSFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTL 169
+L+ ++T + +TVRE ++Y S L L ++ +E
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEG-----ITVRELVAYGRSPWLSLWGRLS-AEDNAR 118
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + + + + AD + + +SGG+R+R +A+ + ++ LDEPT+ LD
Sbjct: 119 VNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173
Query: 230 AFFVTQTLRCLSRDGRTVIASIH---QPSSEVFELFDRLYLLSGGKTV 274
+ + +R L+ G+TV+ +H Q S D L +L+ G +
Sbjct: 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGHVM 217
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--------A 131
PG + AL+G +G+GKSTL+ LS + SG IL++G ++F + A
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG--KPVAFSSPRDALAAGIA 86
Query: 132 YVTQDDNLIGTLTVRETISYSARL-RLPDK----MPWSEKRTLVERTIIEMGLQDCADTV 186
V Q+ +L+ L+V E I L R P + + R + +GL DT+
Sbjct: 87 TVHQELSLVPNLSVAENI----FLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL 142
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFFVTQTLRCLSRDG 244
+G+ +S +R+ V IA + R+L LDEPT+ L F +R L G
Sbjct: 143 VGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF--DLIRRLKAQG 195
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+I H+ EVFE+ DR+ +L G+ V
Sbjct: 196 VAIIYISHRL-DEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSF-- 127
L + A + A++GP+G+GKSTL + L SG++L+ G TK +
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75
Query: 128 --GTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTL--VERTIIEMGLQDC 182
V Q+ D+ I + TV + I++ P + E+ V + +GL++
Sbjct: 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFG-----PINLGLDEETVAHRVSSALHMLGLEEL 130
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS- 241
D V HL SGGE++RV+IA I M P++L LDEPT+GLD + L L
Sbjct: 131 RDRV--PHHL---SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCPAL 296
G TVI S HQ V E+ D +Y++ G+ V +G F + A+ P+L
Sbjct: 186 TYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDLPSL 242
|
Length = 277 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-16
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+L +L + G + LMGPSG GKSTLL + LA +G + LN
Sbjct: 8 VSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66
Query: 121 HKTKLSFGTAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+L AA + QD L L+V + + ++ LP + + +R +
Sbjct: 67 --QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALE 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
GL +SGG+R RV++ +L +P+ L LDEP S LD A
Sbjct: 121 RSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL-------SSRL-ASNAFLSGTI 116
+G+T VL G+ +PG + A++GPSGSGK+TLL + + + + +
Sbjct: 14 HGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR 71
Query: 117 LLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVE 171
L+ K + +V Q+ NL TV E I + P P E
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARAR 126
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ ++GL + + R +SGG+++RV+IA + MRP ++ DEPTS LD
Sbjct: 127 ELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGKTVYFGETSAAF 283
V T+R L+++ RT++ H+ S F ++ DR + G+ V G A F
Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 36/208 (17%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKT 123
H VL+G++ A G + +++G SGSGKST L ++ FL +G+I +NG +
Sbjct: 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-------FLEKPSAGSIRVNGEEI 70
Query: 124 KLSFGTA------------------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+L V Q NL +TV E + + L + +E
Sbjct: 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAE 128
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
E+ + ++G+ + AD HL SGG+++RV+IA + M P ++ DEPTS L
Sbjct: 129 AIERAEKYLAKVGIAEKADAYPA--HL---SGGQQQRVAIARALAMEPEVMLFDEPTSAL 183
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
D V + ++ L+ +GRT++ H+
Sbjct: 184 DPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 43/259 (16%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDL V V +L+G+ + G + A+MGP+GSGKSTL + G
Sbjct: 7 KDLHVEV----EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 115 TILLNGHKTK-------------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
IL +G L+F Q I +T + + + R +
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAF-------QYPVEIPGVTNSDFLRAAMNARRGARG 114
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLR-----GISGGERRRVSIALEILMRPRLL 216
E ++ +GL + L G SGGE++R I +L+ P+L
Sbjct: 115 ILPEFIKELKEKAELLGLDEE--------FLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTV 274
LDEP SGLD A V + + L +GR V+ H + + D++++L G+ V
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIV 224
Query: 275 YFGETSAAFEFFAQAGFPC 293
G+ A E + G+
Sbjct: 225 KSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLSFG 128
+L+ ++ +PG + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 129 T-----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT------IIEM 177
V Q+ N++ ++R+ I+ L D E+ + I E+
Sbjct: 72 AWLRRQVGVVLQE-NVLFNRSIRDNIA------LADPGMSMERVIEAAKLAGAHDFISEL 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
DT++G G+SGG+R+R++IA ++ PR+L DE TS LD + + + +
Sbjct: 125 PEG--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ GRTVI H+ S+ + DR+ ++ G+ V
Sbjct: 182 HDIC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIV 215
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
LE + E G L ++GPSG GK+TLL+ ++ + G+I L+G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAER 72
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V Q++ L+ V++ +++ +L + ++ + + + ++GL+ I W
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI--W 127
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT----LRCLSRDGRT 246
L SGG+R+RV IA + P+LL LDEP LD AF Q L+ G+
Sbjct: 128 QL---SGGQRQRVGIARALAANPQLLLLDEPFGALD---AFTREQMQTLLLKLWQETGKQ 181
Query: 247 VIASIHQPSSEVFELFDRLYLLSGG 271
V+ H VF + L LLS G
Sbjct: 182 VLLITHDIEEAVF-MATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-16
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------HK- 122
VL+GLT PG + AL+GPSGSGKST+ L + G +LL+G H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552
Query: 123 --TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
++ A V Q+ L +VRE I+Y +++ + K I M
Sbjct: 553 LHRQV-----ALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFI--MEFP 604
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ DT +G +SGG+++R++IA ++ +PR+L LDE TS LD+ + Q R
Sbjct: 605 NGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL-QESRS- 661
Query: 241 SRDGRTVIASIHQPS 255
R RTV+ H+ S
Sbjct: 662 -RASRTVLLIAHRLS 675
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----HKTKLS 126
V+ GL+ G L+GP+G+GKST+ + + +A G I + G + +L+
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARLA 112
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q DNL TVRE + R M E ++ + L+ AD
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADAR 169
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ + +SGG +RR+++A ++ P+LL LDEPT+GLD A + + LR L G+T
Sbjct: 170 VSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP--- 299
++ + H E L DRL +L G+ + G A + G C + +P
Sbjct: 225 ILLTTHF-MEEAERLCDRLCVLEAGRKIAEGRPHALID--EHIG--CQVIEIYGGDPHEL 279
Query: 300 -------------SDHFLRCINSDFDKVKATLKGSMKLKF 326
S L C D ++V+ L+G L+
Sbjct: 280 SSLVKPYARRIEVSGETLFCYAPDPEQVRVQLRGRAGLRL 319
|
Length = 340 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL 125
+ L+ + +TAL+GPSG GKSTLL L+ + L A + G +LL+G
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI-Y 77
Query: 126 SFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
V Q N +++ + ++Y RL + I+E
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRL--------HGIKDKELDEIVES 128
Query: 178 GLQDCA--DTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
L+ A D V H G+SGG+++R+ IA + ++P +L +DEPTS LD +
Sbjct: 129 SLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
|
Length = 253 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HK 122
L+G++ + G L+GPSG GK+TLL ++ SG ILL+G HK
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
T V Q+ L LTV E I++ RL+ K+P +E + V + + L+
Sbjct: 72 RP--VNT---VFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGY 123
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
A+ +SGG+++RV+IA ++ P++L LDEP LD + L+ L +
Sbjct: 124 ANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178
Query: 243 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G T + H E + DR+ +++ GK G
Sbjct: 179 ELGITFVFVTHD-QEEALTMSDRIAVMNKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 5e-16
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS 126
V+ G++ + G + L+GP+G+GK+T + + + SG ILL+G TKL
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLP 68
Query: 127 FGTAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
A Y+ Q+ ++ LTV E I +R K EK +E + E +
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITH 125
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ +SGGERRRV IA + P+ L LDEP +G+D A + + ++ L
Sbjct: 126 LRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G V+ + H E + DR Y++ GK + G
Sbjct: 181 DRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-16
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 29/206 (14%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G VL+ ++ G AL GPSG+GKSTLL +L A+ SG IL+
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL---YANYLPDSGRILVRHEGAW 73
Query: 125 LSFGTAA-------------YVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLV 170
+ A+ YV+Q +I ++ E ++ R +P + + R L+
Sbjct: 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 171 ERTIIEMGLQDCADTVIGNWHL--RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
R I L WHL SGGE++RV+IA + +L LDEPT+ LD+A
Sbjct: 134 ARLNIPERL----------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQP 254
V + + G +I H
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-16
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125
G+ +L+G++ + G ++GPSGSGKSTL L + SG++ L+G +
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL---VGIWPPTSGSVRLDGADLRQ 402
Query: 126 ----SFG-TAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
G Y+ QD L GT + E I+ P+K+ + + V I + L
Sbjct: 403 WDREQLGRHIGYLPQDVELFDGT--IAENIARFGEEADPEKVIEAARLAGVHELI--LRL 458
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
DT IG +SGG+R+R+++A + P L+ LDEP S LDS + +
Sbjct: 459 PQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
G TV+ H+PS D++ +L G+ FG
Sbjct: 518 AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556
|
Length = 580 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-16
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 35/233 (15%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ ++ EPG A++GPSGSGKSTLL L L SG++ +G
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLA-GLDVQ 523
Query: 131 AY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---MGLQD 181
A V Q+ L+ + ++ E I+ A L L + + L E I MG+
Sbjct: 524 AVRRQLGVVLQNGRLM-SGSIFENIAGGAPLTLDEAWEAARMAGLAED--IRAMPMGMH- 579
Query: 182 CADTVI---GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
TVI G +SGG+R+R+ IA ++ +PR+L DE TS LD+ V+++L
Sbjct: 580 ---TVISEGGG----TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE 632
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY---FGETSAAFEFFAQ 288
L + R VIA H+ S+ + DR+Y+L G+ V + E A FAQ
Sbjct: 633 RL-KVTRIVIA--HRLST-IRNA-DRIYVLDAGRVVQQGTYDELMAREGLFAQ 680
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 8e-16
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 18/155 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HKTKLSFGTAAYVTQ 135
E G A++GPSG+GKSTLL+ ++ L SG++ LNG T S + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 136 DDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
++NL LTV + I + L+L + +R + +MG++D + G
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLN-----AAQREKLHAIARQMGIEDLLARLPGQ---- 129
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+SGG+R+RV++A ++ +L LDEP S LD A
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 37/267 (13%)
Query: 42 TEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101
T++ D A+L+ +DL V G+ H L+G++ ++TAL+GPSG GKST L
Sbjct: 36 TDYEFDGDAKLSVEDLDVYY----GDDH-ALKGVSMDIPEKSVTALIGPSGCGKSTFLRC 90
Query: 102 LS---SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL---------TVRETI 149
L+ R+ + A + G++ L+G + + + +G + ++RE I
Sbjct: 91 LNRMNDRIKA-ARIDGSVELDGQDI---YQDGVNLVELRKRVGMVFQSPNPFPKSIRENI 146
Query: 150 SYSAR----------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
SY R RL + + LVER++ + L D + + + L G+SGG+
Sbjct: 147 SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL-GLSGGQ 205
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSE 257
++R+ IA + + P ++ +DEP S LD A + + L+ + TV+ H Q ++
Sbjct: 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAAR 264
Query: 258 VFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + L+GG+ V + +T FE
Sbjct: 265 ISD--QTAVFLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG 120
L GE H L +T +TAL+GPSG GKSTLL + + L ++G IL NG
Sbjct: 14 LWYGEKH-ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72
Query: 121 HKTKLSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVE 171
+ A V IG + ++ E ++Y R+ K+TL
Sbjct: 73 ENIM---DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIH-----GEKNKKTL-- 122
Query: 172 RTIIEMGLQDCA--DTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
TI+E L+ A D V H +SGG+++R+ IA + + P ++ +DEP S LD
Sbjct: 123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
A + + L ++ TVI H Q ++ V + +YL GK + F +T+ FE
Sbjct: 183 IATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFMYL---GKLIEFDKTTQIFE 237
|
Length = 253 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 39/237 (16%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HKTKLSFGTAA 131
E G L+GPSGSGK+T L + +RL SG IL++G + + G
Sbjct: 25 EEGEFLVLIGPSGSGKTTTL-KMINRLIEPT--SGEILIDGEDISDLDPVELRRKIG--- 78
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGN 189
YV Q L LTV E I+ +P + W ++R + + +GL D ++ +
Sbjct: 79 YVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGL-DPSE--YAD 130
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+ +SGG+++RV +A + P +L +DEP LD + + ++ L ++ G+T++
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E +L DR+ ++ G+ V + P L NP++ F+
Sbjct: 191 FVTHD-IDEALKLADRIAVMDAGEIVQYDT-------------PDEILANPANDFVE 233
|
Length = 309 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 36/232 (15%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
TH L+G+ + G +TA++G +G+GKSTL L+ L + SG IL +G S
Sbjct: 19 TH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSR 74
Query: 128 G-------TAAYVTQD-DNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMG 178
+ V QD DN + + +V + +S+ A L+LP+ ++RT IE
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-- 132
Query: 179 LQDCADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
HL+ +S G+++RV+IA ++M P++L LDEPT+GLD +
Sbjct: 133 ------------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 283
+ L + ++ G T+I + H ++ L+ D ++++ G+ + G F
Sbjct: 181 MKLLVEMQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLI 140
L+GPSG GK+TLL L+ + SG+I+L+G V Q L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINM---VFQSYALF 54
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200
+TV E +++ ++R K+P +E + V + + L++ AD +SGG++
Sbjct: 55 PHMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQ 106
Query: 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVF 259
+RV++A ++ +P++L LDEP S LD + L+ + G T + H E
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD-QEEAM 165
Query: 260 ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303
+ DR+ ++ GK AQ G P P++ F
Sbjct: 166 TMSDRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 2e-15
Identities = 74/267 (27%), Positives = 119/267 (44%), Gaps = 23/267 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSG-TILLNGHKTKLSFGTAAYVTQD 136
PG L+G +G+GK+T L+ +A ++G +IL N + G Y Q
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG---YCPQF 2020
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
D + LT RE + ARLR +P E + +I +GL AD + G + S
Sbjct: 2021 DAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTY-----S 2072
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG +R++S A+ ++ P L+ LDEPT+G+D A + T+ + R+GR V+ + H
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS-ME 2131
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKA 316
E L RL ++ G G F +++P D L +N +
Sbjct: 2132 ECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQG 2191
Query: 317 TLKGSMK-------LKFETSDDPLEKI 336
GS++ L+F+ S L +I
Sbjct: 2192 NFPGSVQRERHYNMLQFQVSSSSLARI 2218
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
+ T L GL+ G ++G +G+GKSTLL+A++ L SG
Sbjct: 5 SNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SG 61
Query: 115 TILLNGHK-TKLSF----GTAAYVTQD--DNLIGTLTVRETISYSAR--------LRLPD 159
IL++G TK S A V QD LT+ E ++ + L +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219
+ S + L + +GL++ IG +SGG+R+ +S+ + L P++L LD
Sbjct: 122 RRRSSFRERL---ARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLD 173
Query: 220 EPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
E T+ LD A FV + T + + T + H + + +RL +L GK V
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL-DYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-15
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 43/225 (19%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V V E +L+G+ + G + ALMGP+GSGKSTL +
Sbjct: 1 LEIKDLHVSV--GGKE---ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV- 54
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G IL G +D I L E R RL + + +
Sbjct: 55 TEGEILFKG--------------ED---ITDLPPEE------RARLGIFLAFQYPPEIPG 91
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L+ + G SGGE++R I +L+ P L LDEP SGLD A
Sbjct: 92 VKNADF-LRYVNE---------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALR 141
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTV 274
V + + L +G++V+ H + + DR+++L G+ V
Sbjct: 142 LVAEVINKLREEGKSVLIITHYQ--RLLDYIKPDRVHVLYDGRIV 184
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---- 121
G+ L+ G A++G SGSGKSTLL L+ G+I LNG
Sbjct: 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIAS 404
Query: 122 -KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ T + +TQ +L T+R+ LRL + E+ + + ++GL+
Sbjct: 405 LDEQALRETISVLTQRVHLFSG-TLRDN------LRLANPDASDEE---LWAALQQVGLE 454
Query: 181 DCADTVIGNWHL------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
++ + R +SGGERRR+++A +L L LDEPT GLD V
Sbjct: 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L + G+T++ H+ E DR+ +L GK +
Sbjct: 515 ALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKII 551
|
Length = 573 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-15
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 21/188 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HKTKLSF 127
+ GL+ G + GP+GSGK+TLL L+ L+G +LLNG + S
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPLDFQRDSI 71
Query: 128 GTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ + TL+V E + + VE + +GL D
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP 122
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S G++RRV++A +L L LDEPT+ LD A + + G
Sbjct: 123 VAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177
Query: 247 VIASIHQP 254
V+ + HQ
Sbjct: 178 VVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 3e-15
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 40/268 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH----KTKLSFGTAAYVTQDD 137
G L+GP+G+GKST+ L ++ + G I + G + +L+ V Q D
Sbjct: 30 GECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLARVAIGVVPQFD 86
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
NL TVRE + R M E ++ + L+ AD + +SG
Sbjct: 87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVAL-----LSG 138
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257
G +RR+++A ++ P+LL LDEPT+GLD A + + LR L G+T++ + H E
Sbjct: 139 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF-MEE 197
Query: 258 VFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP-------------- 299
L DRL +L G+ + G A + Q G C + +P
Sbjct: 198 AERLCDRLCVLESGRKIAEGRPHALID--EQIG--CNVIEIYGGDPDELRELIRPYARRI 253
Query: 300 --SDHFLRCINSDFDKVKATLKGSMKLK 325
S L C D ++V+ L+G L+
Sbjct: 254 EVSGETLFCYARDPEQVRVQLRGRTDLR 281
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ +L+ L+ + G A++GP+G+GKSTLL L+ L LSGT+ + G
Sbjct: 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV-G 382
Query: 121 HKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
K+ Y Q D L TV E +S PD E R + R G
Sbjct: 383 ETVKI-----GYFDQHRDELDPDKTVLEELSEGF----PDGDE-QEVRAYLGR----FGF 428
Query: 180 -QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ + +G +SGGE+ R+ +A +L P LL LDEPT+ LD
Sbjct: 429 TGEDQEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 70/216 (32%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129
L+ ++ EPG AL+G SGSGKSTL+ L R SG ILL+GH + +
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPD--SGQILLDGHDLADYTLAS 403
Query: 130 ----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD- 184
A V+QD L T+ I+Y + R +ER + QD D
Sbjct: 404 LRRQVALVSQDVVLFND-TIANNIAYGRTEQAD--------RAEIERALAAAYAQDFVDK 454
Query: 185 ------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
T IG + +SGG+R+R++IA +L +L LDE TS LD+ + V L
Sbjct: 455 LPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L + GRT + H+ S+ E DR+ ++ G+ V
Sbjct: 514 RLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIV 546
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-15
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------V 133
G + A+MGPSG+GKSTLL+ ++ + SG+I +N + G A Y +
Sbjct: 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVND---QSHTGLAPYQRPVSML 75
Query: 134 TQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Q++NL LTVR+ I L+L +E++ V ++G+ D D +
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLN-----AEQQEKVVDAAQQVGIADYLDRLPEQ-- 128
Query: 192 LRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSA---AAFFVTQTLRCLSRDGRTV 247
+SGG+R+RV++A L+RP +L LDEP S LD + + L C R RT+
Sbjct: 129 ---LSGGQRQRVALA-RCLVRPNPILLLDEPFSALDPLLREEMLALVKQL-CSERQ-RTL 182
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
+ H S+ + ++ ++S GK +
Sbjct: 183 LMVTHHL-SDARAIASQIAVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 7e-15
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 35/243 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126
VL+GL +T L+G +G GKSTL LS L G +L G S
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 127 ---FGTAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQD 181
A V QD + I + I++S R L +P+ + R + D
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE--------ITRRV------D 118
Query: 182 CADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
A T++ H R +S G+++RV+IA ++++ R L LDEPT+GLD A +
Sbjct: 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPC 293
+R + G VI S H ++E+ D +Y+L G+ + G F E QAG
Sbjct: 179 IRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQ 237
Query: 294 PAL 296
P L
Sbjct: 238 PWL 240
|
Length = 271 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 88/292 (30%), Positives = 132/292 (45%), Gaps = 54/292 (18%)
Query: 22 SIVVG-GLSPLSETI--WKEKINTEFSGDVSARLTWKDLTVM------------------ 60
SI+VG L+P+ I WK+ FSG AR +K L +
Sbjct: 264 SILVGRALAPIDGAIGGWKQ-----FSG---ARQAYKRLNELLANYPSRDPAMPLPEPEG 315
Query: 61 -VTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
+++ N G L G++ + G A++GPSGSGKSTL + + S
Sbjct: 316 HLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTS 372
Query: 114 GTILLNGHKTKL----SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
G++ L+G K +FG Y+ QD L TV E I+ P+K+ + K
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLA 431
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
V I+ L D DTVIG G SGG+R+R+++A + P+L+ LDEP S LD
Sbjct: 432 GVHELIL--RLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
+ ++ L G TV+ H+PS + D++ +L G+ FGE
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 9e-15
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGH---KTKLSFGTAAY 132
G L AL+GPSGSGK+TLL RL A L SGTIL G + +
Sbjct: 26 PSGELVALLGPSGSGKTTLL-----RLI--AGLERPDSGTILFGGEDATDVPVQERNVGF 78
Query: 133 VTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
V Q L +TV + +++ R++ ++ P +E R V + + L AD +
Sbjct: 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----Y 133
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-----GRT 246
+SGG+R+RV++A + + P++L LDEP LD+ V + LR R T
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK----VRKELRRWLRRLHDELHVT 189
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ H E E+ DR+ +++ G+ G
Sbjct: 190 TVFVTHD-QEEALEVADRVVVMNKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-14
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 30/212 (14%)
Query: 89 GPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTA-------AYVTQD---D 137
G +G+G+S L++A+S R + SG ILLNG AYV +D
Sbjct: 291 GVAGNGQSELVEAISGLRKPA----SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 138 NLIGTLTVRETISYS-------ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
L+ L++ E + +R D R I E ++ +
Sbjct: 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLD---RRAIRKFARELIEEFDVRAPSPDA---- 399
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
R +SGG ++++ +A E+ RP LL +PT GLD A F+ + L L G+ V+
Sbjct: 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL- 458
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
I + E+ EL DR+ ++ G+ V A
Sbjct: 459 ISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
|
Length = 501 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT S G+ ++ ++ PG + L+GP+G+GK+T + L G I NG
Sbjct: 8 VTKSFGDKK-AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNG 63
Query: 121 HK-TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT----LVERTII 175
++ Y+ ++ L +TV + + Y A L+ MP +E + +ER I
Sbjct: 64 GPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEI 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+S G ++++ ++ P LL LDEP SGLD +
Sbjct: 121 VGKKTKKIKE---------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
+ L +G T+I S H+ V EL DRL +L G+TV +G
Sbjct: 172 AIFELKEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 37/255 (14%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT G + L G L+GPSGSGK+T + ++ + SG I ++G
Sbjct: 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDG 62
Query: 121 HKT------KL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
+L G YV Q L +TV E I+ +P + W +++ +
Sbjct: 63 EDIREQDPVELRRKIG---YVIQQIGLFPHMTVEENIAL-----VPKLLKWPKEK--IRE 112
Query: 173 TIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
E + L + + +SGG+++RV +A + P LL +DEP LD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
+ + + L ++ G+T++ H E F L DR+ ++ G+ V Q G
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIV-------------QVG 218
Query: 291 FPCPALRNPSDHFLR 305
P LR+P++ F+
Sbjct: 219 TPDEILRSPANDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-14
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 59/204 (28%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-----AYVT 134
G + + G G+G++ L +AL SG I L+G T+ S A AYV
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 135 QD---DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
+D + L+ L+V E I+ S+ L
Sbjct: 82 EDRKREGLVLDLSVAENIALSSLL------------------------------------ 105
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
SGG +++V +A + PR+L LDEPT G+D A + + +R L+ G+ V+
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI- 160
Query: 252 HQPSS---EVFELFDRLYLLSGGK 272
SS E+ L DR+ ++ G+
Sbjct: 161 ---SSELDELLGLCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 31/234 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRL----ASNAFLSGTILLNGHKTKLSFGT---AAY 132
G + +MG SGSGKST + L+ RL A F+ G ++ +L
Sbjct: 17 AKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q L +T+ + S L P E++ + +GL++ +
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YP 127
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 251
+SGG ++RV +A + P +L +DE S LD + L+ L +T++
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E + DR+ ++ G+ V Q G P LRNP++ ++
Sbjct: 188 HD-LDEAIRIGDRIVIMKAGEIV-------------QVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------ 132
G + ALMG +G+GKSTLL LS + +G+IL++G + + + TAA
Sbjct: 27 CRAGQVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
+ Q+ +L+ +TV E + +LP K +R L + L+ + + L
Sbjct: 84 IYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQ--LEHLGVDIDPDTPL 138
Query: 193 RGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+ +S G+R+ V IA + L R R++ DEPTS L + + + +R L +GR ++
Sbjct: 139 KYLSIGQRQMVEIA-KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVS 197
Query: 252 HQPSSEVFELFDRLYLLSGGKTV 274
H+ E+F L D + + G+ V
Sbjct: 198 HR-MEEIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT 129
+ ++ ++ L+GP+G+GKSTLL ++ L SG I+ +GH T+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHK 71
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+ + L LT RE + L LPD I E+ L T G
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDS------------RIDEV-LNIVDLTNTG 118
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+ S G ++R+ IA+ +L P+LL LDEPT+GLD + + +R G TVI
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
S H SEV +L D + ++S G Y G+
Sbjct: 179 LSSH-ILSEVQQLADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 37/252 (14%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V V E +L+G+ + G + A+MGP+GSGKSTL ++ +
Sbjct: 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV- 54
Query: 112 LSGTILLNGHKTK-------------LSFGTAAYVTQDDNLIGTLTVRETI--SYSARL- 155
SGTIL G L+F Q I ++ E + + +AR
Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAF-------QYPEEIPGVSNLEFLRSALNARRS 107
Query: 156 -RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214
R + + + L++ + +G+ + N G SGGE++R I L+ P+
Sbjct: 108 ARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN---EGFSGGEKKRNEILQMALLEPK 164
Query: 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGK 272
L LDE SGLD A V + + L R+ + H + D +++L G+
Sbjct: 165 LAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGR 222
Query: 273 TVYFGETSAAFE 284
V G+ A E
Sbjct: 223 IVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 34/250 (13%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLA 107
++ +DL V S G+ VL+G+ T+TALMGPSGSGKSTLL + L
Sbjct: 2 NKIEIRDLKV----SFGQVE-VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELY 56
Query: 108 SNAFLSGTILLNGH---KTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARL------- 155
A +SG + L+G K + V Q N I L++ E ++ +L
Sbjct: 57 PEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSK 116
Query: 156 -RLPDKMPWS-EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213
L +++ W+ EK L + ++D D G +SGG+++R+ IA + +P
Sbjct: 117 KELQERVRWALEKAQLWDE------VKDRLDAPAGK-----LSGGQQQRLCIARALAFQP 165
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273
+L DEPT+ LD + L +D T++ H P + + D + L G+
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFP-QQAARISDYVAFLYKGQI 223
Query: 274 VYFGETSAAF 283
V +G T F
Sbjct: 224 VEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHK-TKLSFGTAAY---- 132
+TAL+GPSG GKSTLL +L+ + L + G +L +G
Sbjct: 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRV 84
Query: 133 --VTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
V Q N +++ + I+Y RL + DK E +VE ++ + L D V
Sbjct: 85 GMVFQKPNPF-PMSIYDNIAYGPRLHGIKDK---KELDEIVEESLKKAALWD---EVKDR 137
Query: 190 WHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
H G+SGG+++R+ IA + + P +L LDEPTS LD A + + ++ L + T+
Sbjct: 138 LHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTI 196
Query: 248 IASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ H Q ++ + DR G+ V +G T F
Sbjct: 197 VIVTHNMQQAARI---SDRTAFFYDGELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-14
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--------AYVTQD---DNLI 140
G+G++ L AL + SG ILL+G + + AYV +D + L+
Sbjct: 295 GAGRTELARAL---FGARPASSGEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349
Query: 141 GTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCA--DTVIGNWHLRGIS 196
+++ E I+ ++ R + + R L ER I + + + IG +S
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSPEQPIGT-----LS 403
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG +++V +A + P++L LDEPT G+D A + + +R L+ +G+ ++ SS
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI----SS 459
Query: 257 EVFELF---DRLYLLSGGKTV 274
E+ EL DR+ ++ G+ V
Sbjct: 460 ELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-14
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 61 VTLSNGETHNVLEGLTGY---AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
+ S G+ + L LTG + G AL+G SGSGKSTLL L+ L + SG +
Sbjct: 12 LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGS--SGEVS 68
Query: 118 LNGH---------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKR 167
L G + KL +V Q LI TL E + A LR + + +
Sbjct: 69 LVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK 128
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L+E ++GL D HL +SGGE++RV++A RP +LF DEPT LD
Sbjct: 129 ALLE----QLGLGKRLD------HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
Query: 227 SAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
+ L L+R+ G T+I H
Sbjct: 179 RQTGDKIADLLFSLNREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 7e-14
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 47/209 (22%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
G L A++GP GSGKS+LL AL L LSG++ + G+ AYV+Q+
Sbjct: 28 VPKGELVAIVGPVGSGKSSLLSAL---LGELEKLSGSVSVP--------GSIAYVSQEPW 76
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------------DTV 186
+ T+RE I + P+ E+R E+ I + CA T
Sbjct: 77 IQNG-TIRENILFGK--------PFDEER--YEKVI-----KACALEPDLEILPDGDLTE 120
Query: 187 IGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRD 243
IG +GI SGG+++R+S+A + + LD+P S +D+ + L +
Sbjct: 121 IGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+T I HQ ++ D++ +L G+
Sbjct: 178 NKTRILVTHQL--QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 8e-14
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G A+ GPSG GKSTLL ++S ++ SGT+L G +D +
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEG--------------EDVST 69
Query: 140 IGTLTVRETISYSARLR--LPDKM------PWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
+ R+ +SY A+ D + PW + +R L A + +
Sbjct: 70 LKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA---LDLLARFALPDSI 126
Query: 192 LR----GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
L +SGGE++R+++ + P++L LDE TS LD + + + + R+
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 248 IASIHQPSSEVFELFDRLYLLSGGK 272
+ I + D++ L G
Sbjct: 187 VLWITHDKDQAIRHADKVITLQPGH 211
|
Length = 223 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 8e-14
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVT 134
E +TAL+G SG GKST L + A + G + + G K V
Sbjct: 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85
Query: 135 QDDNLIGTLTVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWH 191
Q N+ ++ E ISY+ +L + +K E+ LV + ++GL ++ D + N
Sbjct: 86 QQPNVF-VKSIYENISYAPKLHGMIKNK---DEEEALVVDCLQKVGLFEEVKDKLKQN-- 139
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++R+ IA + ++P+LL LDEPTS LD ++ + + L+ LS + ++ +
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + + L G+ + FGE+ FE
Sbjct: 200 NMQQGKRVADYTAFFHL--GELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 9e-14
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 27/215 (12%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHK--------TKLSFGTAAYV 133
+TAL+GPSG GKST L L+ + L SN + G +LL+G +L V
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR-KRVGMV 90
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWH 191
Q N +++ + ++Y R+ +K+ L + I+E L+ A D V +
Sbjct: 91 FQKPNPF-PMSIYDNVAYGPRIH-----GIKDKKELDK--IVEWALKKAALWDEVKDDLK 142
Query: 192 LR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+SGG+++R+ IA I ++P ++ +DEPTS LD + + + L ++ VI
Sbjct: 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202
Query: 250 SIH-QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + Q +S V + + +L+ G + F +T F
Sbjct: 203 THNMQQASRVSD-YTAFFLM--GDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTA------AYVTQ 135
+TAL+GPSG GKSTLL L+ + L ++G + ++G + A V Q
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ 90
Query: 136 DDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
N +++ E ++Y R + + DK E +VER++ L D + H G
Sbjct: 91 KPNPF-PMSIYENVAYGLRAQGIKDKKVLDE---VVERSLRGAALWDEVKDRL-KSHAFG 145
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIH 252
+SGG+++R+ IA I M P ++ +DEPTS LD A + + + L ++ VI S+
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ 205
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR-CINSDF 311
Q + DR G+ V +T F NP D + +N DF
Sbjct: 206 QAR----RISDRTAFFLMGELVEHDDTQVIFS-------------NPKDDRTQGYVNGDF 248
|
Length = 249 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG 128
V+ ++ G + L+GP+G+GK+T + + + SG ILL+ TKL
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74
Query: 129 TAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y+ Q+ ++ LTV + I +R D +E++ ++ + E +
Sbjct: 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK-AERKEELDALLEEFHIT--- 130
Query: 184 DTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
HLR +SGGERRRV IA + P+ + LDEP +G+D A + + ++
Sbjct: 131 -------HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L G V+ + H E ++ DR Y++S GK
Sbjct: 184 HLKDRGIGVLITDHN-VRETLDICDRAYIISDGK 216
|
Length = 243 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---------H 121
L+G++ E G + +GP+G+GK+T L LS L SG + + G
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKF 92
Query: 122 KTKLS--FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPDKMPWSEKRTLVERTIIEMG 178
++ FG Q L L V ++ A + LP + + ++ +
Sbjct: 93 LRRIGVVFG------QKTQLWWDLPVIDSFYLLAAIYDLPP----ARFKKRLDELSELLD 142
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L++ DT +R +S G+R R IA +L P +LFLDEPT GLD A + L+
Sbjct: 143 LEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197
Query: 239 CLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+R+ G TV+ + H ++ L R+ ++ G+ +Y G
Sbjct: 198 EYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS---------RLASNAFLSGTILL 118
H L +T G L+GPSG+GKS+LL L+ +A N F
Sbjct: 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73
Query: 119 NGHKTKLSFGTAAYVTQDDNLIGTLTVRET-ISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+ L V Q NL LTV+E I R+ + + E+ + +
Sbjct: 74 DKAIRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVL---GLSKDQALARAEKLLKRL 129
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L+ AD + L +SGG+++RV+IA ++M P++L DEPT+ LD + +
Sbjct: 130 RLKPYAD----RYPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 238 RCLSRDGRTVIASIHQ 253
+ L+ G T + H+
Sbjct: 185 KELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-13
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 35/207 (16%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTK 124
H VL+G++ A G + +++G SGSGKST L ++ FL G+I++NG
Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-------FLEKPSEGSIVVNGQTIN 70
Query: 125 LSFGT------------------AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
L V Q NL +TV E + + L + E
Sbjct: 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEA 128
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R + + ++G+ + A G + + +SGG+++RVSIA + M P +L DEPTS LD
Sbjct: 129 RERAVKYLAKVGIDERAQ---GKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQ 253
V + ++ L+ +G+T++ H+
Sbjct: 185 PELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V++ +L L+ PG A++GP+G+GK+TLL L+ SG + L G
Sbjct: 37 VSVRRNG-KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP---SSGDVTLLG 92
Query: 121 H---KTKLSFGTAAYVTQDDNLIGTLTVRETISYSA---RLRLPDK-------------- 160
K + F +R+ I + R +
Sbjct: 93 RRFGKGETIF----------------ELRKRIGLVSSELHERFRVRETVRDVVLSGFFAS 136
Query: 161 -MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219
+ E T + + L+ + + +S GE+RRV IA ++ P LL LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 220 EPTSGLDSAAAFFVTQTLRCL--SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
EP GLD A + L L S ++ H E+ F LL G+ V G
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQG 255
Query: 278 ET 279
+
Sbjct: 256 KL 257
|
Length = 257 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTK---- 124
++E + +PG AL+G SGSGKST+ ++L + + SG IL +G +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTI-----AKLVAGLYQPWSGEILFDGIPREEIPR 548
Query: 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDC 182
+ + A V QD L TVR+ + TL + TI + L + C
Sbjct: 549 EVLANSVAMVDQDIFLFEG-TVRDNL------------------TLWDPTIPDADLVRAC 589
Query: 183 ADTVI--------GNWHL------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
D I G + +SGG+R+R+ IA ++ P +L LDE TS LD
Sbjct: 590 KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPS 255
+ LR R G T I H+ S
Sbjct: 650 TEKIIDDNLR---RRGCTCIIVAHRLS 673
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 58/248 (23%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L++ L L+G G + L+GP+G+GKSTLL +R+A SG+I
Sbjct: 1 SILMQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL----ARMAGMTSGSGSIQ 56
Query: 118 LNGHKTKLSFGTA-----AYVTQDDNLIGTL-------------TVRETISYSAR-LRLP 158
G + T AY++Q + T E ++ A L L
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD 116
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-----MRP 213
DK+ S +SGGE +RV +A +L P
Sbjct: 117 DKLGRS---------------------------TNQLSGGEWQRVRLAAVVLQITPDANP 149
Query: 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
+LL LDEP + LD A + + L L + G ++ S H + R +LL G
Sbjct: 150 AGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKRG 208
Query: 272 KTVYFGET 279
K + G
Sbjct: 209 KLLASGRR 216
|
Length = 248 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 37/220 (16%)
Query: 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105
G V + + D V+ S + +E ++ A+PG A++GP+G+GKSTL+ L R
Sbjct: 329 GRVKGAVEFDD----VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQR 383
Query: 106 LASNAFLSGTILLNGHKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157
+ SG IL++G + + V QD L ++ + I R+
Sbjct: 384 VFDPQ--SGRILIDGTDIRTVTRASLRRNIAV---VFQDAGLFNR-SIEDNI----RVGR 433
Query: 158 PDKMPWSEKRTLVERT----IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILM 211
PD E R ER IE D DTV+G RG +SGGER+R++IA +L
Sbjct: 434 PDATD-EEMRAAAERAQAHDFIERKP-DGYDTVVGE---RGRQLSGGERQRLAIARALLK 488
Query: 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
P +L LDE TS LD V L L + GRT +IA
Sbjct: 489 DPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIA 527
|
Length = 588 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 35/225 (15%)
Query: 42 TEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101
+F + +T ++L++ + +L L PG + G SG+GK++LL A
Sbjct: 383 IDFDDNADHGITLENLSLR----TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 102 LSSRLASNAFL----SGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY-SARLR 156
L A L SG I + L Y+ Q GTL RE + Y +A
Sbjct: 439 L-------AGLWPWGSGRISMPADSALLFLPQRPYLPQ-----GTL--REALCYPNAAPD 484
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADT--VIGNWHLRGISGGERRRVSIALEILMRPR 214
D LV + ++GL D A+ W R +SGGE++R++ A +L +P+
Sbjct: 485 FSDA-------ELVA-VLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPK 535
Query: 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
+FLDE TS LD + Q L+ D TVI+ H+P+ F
Sbjct: 536 WVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRPTLWNF 579
|
Length = 604 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ G T VL + + G + ++GPSGSGKSTLL ++ SG ++++G
Sbjct: 7 VSKHFGPT-QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN---KLEEITSGDLIVDG 62
Query: 121 HKTK-------LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVER 172
K L A V Q L LT E + + R+R K E
Sbjct: 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK---EEAEKQARE 119
Query: 173 TIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ ++GL + A H +SGG+++RV+IA + ++P+L+ DEPTS LD
Sbjct: 120 LLAKVGLAERAH------HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173
Query: 232 FVTQTLRCLSRDGRTVIASIHQ 253
V + ++ L+ +G T++ H+
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-13
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 61/214 (28%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTI 116
++L+ + +L+ L+ +PG + GPSG+GKS+L AL A L SG I
Sbjct: 6 LSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-------AGLWPWGSGRI 58
Query: 117 LLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + L Y+ GTL RE + Y PW L
Sbjct: 59 GMPEGEDLLFLPQRPYLPL-----GTL--REQLIY----------PWD--DVL------- 92
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
SGGE++R++ A +L +P+ +FLDE TS LD + + Q
Sbjct: 93 -------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
L+ G TVI+ H+PS F DR+ L G
Sbjct: 134 LK---ELGITVISVGHRPSLWKF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 3e-13
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 21/230 (9%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNG--- 120
G+ H V + + E ++TA++GPSG GKST+L +++ L +A ++G ILL+
Sbjct: 15 GKNHAVKDVSMDFPE-NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73
Query: 121 HKTKLSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + + V Q N +++ + + A +L ++ SE +VE ++
Sbjct: 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKR 131
Query: 177 MGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ L D D + N +SGG+++R+ IA I ++P ++ +DEP S LD + + +
Sbjct: 132 VALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189
Query: 236 TLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ L ++ T+I H Q ++ V + Y+ G V GET F
Sbjct: 190 LIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L G++ G A++G SG+GKST+L L N SG+I ++G + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 131 AY-----VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
V QD L T+ I Y R + + I+ L + DT
Sbjct: 335 LRRAIGIVPQDTVLFND-TIAYNIKY-GRPDATAEEVGAAAEAAQIHDFIQS-LPEGYDT 391
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+G L+ +SGGE++RV+IA IL P +L LDE TS LD+ + LR +S GR
Sbjct: 392 GVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GR 449
Query: 246 TVIASIHQPSS 256
T + H+ S+
Sbjct: 450 TTLVIAHRLST 460
|
Length = 497 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-T 123
VL+G++ G + A++G SGSGKSTLL L + SG +L NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG---GLDNPTSGEVLFNGQSLS 70
Query: 124 KLSFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
KLS A + Q +L+ T E ++ + K E + +
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 176 EMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
++GL+ + H +SGGER+RV+IA ++ +P L+ DEPT LD+ A +
Sbjct: 128 KVGLEHRIN------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 235 QTLRCLSRDGRT 246
+ L+R+ T
Sbjct: 182 DLMLELNRELNT 193
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 70/191 (36%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
L+GL PG AL+GPSG+GKSTL L R SG ILL+G +
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ--SGRILLDGVDLR-QLD 408
Query: 129 TA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
A A V QD L +V E I Y R D+ + R I L +
Sbjct: 409 PAELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEAAARAAHAHEFIS-ALPEG 465
Query: 183 ADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT +G RG+ SGG+R+R++IA IL +L LDE TS LD+ + V Q L L
Sbjct: 466 YDTYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522
Query: 241 SRDGRT--VIA 249
+ GRT +IA
Sbjct: 523 MK-GRTTLIIA 532
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-13
Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 42/225 (18%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125
+ VL+GL+ + G AL+G +G GKSTLL L+ G ILLNG
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPI-- 404
Query: 126 SFGTAAYVTQDDNLIGTLTVRETIS--------YSARLR----LPDKMPWSEKRTLVERT 173
A Y +R+ IS +SA LR L E V +
Sbjct: 405 ----ADYSEA--------ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQ 452
Query: 174 IIEMGLQDCADTVIG--NWHL----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+ GL+ + G W L R +SGGE+RR+ IA +L LL LDEPT GLD+
Sbjct: 453 V---GLEKLLEDDKGLNAW-LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ + L +++ +TV+ H+ + E FDR+ ++ G+
Sbjct: 509 ETERQILELLAEHAQN-KTVLMITHRLTG--LEQFDRICVMDNGQ 550
|
Length = 574 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-----KLS 126
L+GL+ G+ TAL+GP+G+GKSTLL L+ G + + G + K
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWV 77
Query: 127 FGTAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V QD D+ + + TV + +++ + L E VE + + + D D
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD----EVERRVEEALKAVRMWDFRD 133
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
+HL S G+++RV+IA + M P ++ LDEP + LD + + L L G
Sbjct: 134 K--PPYHL---SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+TVI + H E D++ +L G+ + G+ S
Sbjct: 189 KTVIVATHD-VDLAAEWADQVIVLKEGRVLAEGDKS 223
|
Length = 274 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-13
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---HKTKLSFGT----A 130
E +TAL+GPSG GKST L L+ + L + + G +LL+G +K+ +
Sbjct: 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86
Query: 131 AYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCA--DTVI 187
V Q N +++ + ++Y R + DK + L E I+E L+ A D V
Sbjct: 87 GMVFQQPNPF-PMSIYDNVAYGPRTHGIKDK------KKLDE--IVEKSLKGAALWDEVK 137
Query: 188 GNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
G+SGG+++R+ IA + + P +L +DEPTS LD + + + ++ L +D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-Y 196
Query: 246 TVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
T++ H Q +S + D+ G+ V FG+T F
Sbjct: 197 TIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++L+ G +LE ++ PG L+G +G+GKSTLL L+ L + SG +
Sbjct: 9 LSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK 64
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMG 178
Y++Q+ L TV + + + L ++ + L + +
Sbjct: 65 GLR------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYAL-LADPDDELLA 117
Query: 179 LQDCADTVIGNWHLR----------GI----------SGGERRRVSIALEILMRPRLLFL 218
+ + W L G SGG RRRV++A +L P LL L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 219 DEPTSGLD 226
DEPT+ LD
Sbjct: 178 DEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 30/233 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT 129
VL+GL G AL+GPSGSGKST+L L + G I + G + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL---MTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 130 AAYVTQDD-----------------NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
V D+ NL TV + ++ + L L +EKR +
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM--- 128
Query: 173 TIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+++M GL D AD + +SGG+++RV+IA + MRP+++ DE TS LD
Sbjct: 129 ELLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V +R L+ + + + E DR+ G+ V G+ F
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ L+ + G AL+G SGSGKSTLL L+ L G I L+G +
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPV------S 67
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
+LI L R + DT + N
Sbjct: 68 DLEKALSSLISVLNQRPYL---------------------------------FDTTLRNN 94
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
R SGGER+R+++A +L ++ LDEPT GLD + + + +D +T+I
Sbjct: 95 LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWI 153
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
H + E D++ L GK + G
Sbjct: 154 THHLTG--IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 23/226 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSGTILLNGH------ 121
+L+ +T ++ +MGPSGSGKSTLL L+ + S + G +L G
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMG 178
K + G V Q N L++ + I+Y + + +K E + +VE + ++G
Sbjct: 85 AIKLRKEVGM---VFQQPNPFPHLSIYDNIAYPLKSHGIKEK---REIKKIVEECLRKVG 138
Query: 179 L-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L ++ D + N +SGG+++R++IA + ++P++L +DEPTS +D + + + +
Sbjct: 139 LWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L + VI S H P +V + D + L G+ V +G ++ F
Sbjct: 197 TELKNEIAIVIVS-HNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------VTQ 135
G + AL+G SG GKSTLL L+ A G I+L+G Y + Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSH---VPPYQRPINMMFQ 98
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L +TV + I++ + DK+P +E + V + + +Q+ A +
Sbjct: 99 SYALFPHMTVEQNIAFGLK---QDKLPKAEIASRVNEMLGLVHMQEFA-----KRKPHQL 150
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---------CLSRDGRT 246
SGG+R+RV++A + RP+LL LDEP LD + LR L R G T
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLRDRMQLEVVDILERVGVT 202
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ H E + R+ +++ GK V GE +E
Sbjct: 203 CVMVTHD-QEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
Length = 377 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG----TAAYVTQDDNL 139
+TA +G +G+GK+T L L+ L SGT+L+ G + + + Q + L
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
LTV E I + A+L+ W E + +E + + GL N + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGM 1066
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
+R++S+A+ + +++ LDEPTSG+D + + L R GRT+I S H E
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL-LKYRSGRTIIMSTHH-MDEAD 1124
Query: 260 ELFDRLYLLSGGK 272
L DR+ ++S G+
Sbjct: 1125 LLGDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 28/223 (12%)
Query: 59 VMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTI 116
V VT NG H L + G++ AL+G +GSGKSTL AL RLAS G I
Sbjct: 12 VTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS-----GKI 64
Query: 117 LLNGHKTK--LSFGTAAYVTQDDNLIGTLTVR-ETISYSAR------LRLPDKMPWSEKR 167
+ G T+ L AYV Q + + + V E + R LR R
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAK----KRDR 120
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+V + + + + IG +SGG+++RV +A I + +++ LDEP +G+D
Sbjct: 121 QIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
+ LR L +G+T++ S H S V E D ++ G
Sbjct: 176 KTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMVKG 217
|
Length = 272 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 26/216 (12%)
Query: 47 DVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106
+ ARL + LT L G+ + V E LT G TA++GP+G GKSTLL LS RL
Sbjct: 3 ESVARLRGEQLT----LGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 107 ASNAFLSGTILLNG-----HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK- 160
+ A G + L+G + +K + Q+ G +TV+E + AR R P +
Sbjct: 57 MTPA--HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV---ARGRYPHQP 111
Query: 161 --MPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217
W E V + + G+ AD + +SGG+R+R IA+ + ++
Sbjct: 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIML 166
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH 252
LDEPT+ LD + + + L L+R+ G T+ A +H
Sbjct: 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK 122
L+ L G L+GPSG GK+T L R+ A L SG I + G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-----RMI--AGLEEPTSGRIYIGGRD 63
Query: 123 -TKLSFG--TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
T L A V Q+ L +TV + I++ +LR K+P + I+ +
Sbjct: 64 VTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP---------KDEIDERV 111
Query: 180 QDCADTV-IG---NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
++ A+ + I + + +SGG+R+RV++ I+ P++ +DEP S LD+ +
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 236 TLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L+ L + G T I H E + DR+ +++ G+ G
Sbjct: 172 ELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 25/213 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAA-----YVT 134
PG + AL+G +G+GKSTL+ LS GTI +N KL AA +
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 135 QDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVI 187
Q+ ++I LTV E + R K + W E R ++ +GL+ D +
Sbjct: 87 QELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV 143
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
N +S ++ + IA +++ +++ +DEPTS L + ++ + L ++G +
Sbjct: 144 AN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAI 198
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ H+ +E+ + DR ++ G +V G S
Sbjct: 199 VYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230
|
Length = 510 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 67/243 (27%), Positives = 95/243 (39%), Gaps = 81/243 (33%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++G SGSGK+TLL +S RL +A GT Y +D
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDA-----------------GTVTYRMRDGQPR 73
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL--QDCADTV------------ 186
T+ E +E+R L+ RT E G Q+ D +
Sbjct: 74 DLYTMSE----------------AERRRLL-RT--EWGFVHQNPRDGLRMQVSAGGNIGE 114
Query: 187 ----IGNWHL-------------------------RGISGGERRRVSIALEILMRPRLLF 217
IG H R SGG ++R+ IA ++ RPRL+F
Sbjct: 115 RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVF 174
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276
+DEPT GLD + + LR L R+ G V+ H + L DRL ++ G+ V
Sbjct: 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQGQVVES 233
Query: 277 GET 279
G T
Sbjct: 234 GLT 236
|
Length = 258 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGT 129
L+G+ +TAL+GPSG GKST L L+ + L ++G + L G +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI---YAP 77
Query: 130 AAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
V Q +G + ++ E + Y RL +K L E +E L+
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLA-----GVKDKAVLDE--AVETSLK 130
Query: 181 DCA--DTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
A D V + H +S GG+++RV IA + ++P ++ LDEPTS LD ++ +
Sbjct: 131 QAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM 190
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L L RD T+I H + + D+ G + F +T F
Sbjct: 191 LLEL-RDQYTIILVTHS-MHQASRISDKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKLSFGTAAY----------- 132
ALMGPSG GKSTLL + L N A + G + L FG Y
Sbjct: 34 ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL--------FGRNIYSPDVDPIEVRR 85
Query: 133 ----VTQDDNLIGTLTVRETISYSARL--------RLPDKMPWS-EKRTLVERTIIEMGL 179
V Q N LT+ + ++ +L L +++ W+ +K L + ++ L
Sbjct: 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE--VKDRL 143
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
D N +SGG+R+R+ IA + M+P++L +DEPT+ +D + + L
Sbjct: 144 NDYP----SN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 240 LSRDGRTVIASIHQP--SSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L ++ T++ H P ++ V + LYL GK + G T FE
Sbjct: 195 LKKE-YTIVLVTHSPAQAARVSDYVAFLYL---GKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 6e-12
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 39/227 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHK-TKLSFGT----AAY 132
G AL+GPSG+GK++LL+AL FL G++ +NG + +L + ++
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALL------GFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 133 VTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERTII-------EMGLQDCAD 184
V Q+ L GTL R+ + L PD + + +E + GL D
Sbjct: 428 VGQNPQLPHGTL--RDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----D 476
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T IG+ G+S G+ +R+++A +L +LL LDEPT+ LD+ + V Q L SR
Sbjct: 477 TPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-R 534
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTV---YFGETSAAFEFFAQ 288
+T + HQ E +D+++++ G+ V + E S A FA
Sbjct: 535 QTTLMVTHQ--LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFAT 579
|
Length = 588 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 6e-12
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ ++ E G + ++GPSG+GKSTL+ L +RL G+IL++G K
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPT--EGSILIDGVDIK-----T 69
Query: 131 AYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
V IG + TV++ I Y L+ EK VE + +GL
Sbjct: 70 IDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK-------GEKNVDVEYYLSIVGL-- 120
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL- 240
+ ++ +SGGE +RVSIA + P +L LDEPTS LD + + + + L
Sbjct: 121 --NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
++ TVI H + + D L+ G V + +T ++FF
Sbjct: 179 NKMNLTVIWITHN-MEQAKRIGDYTAFLNKGILVEYAKT---YDFF 220
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 6e-12
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 38/197 (19%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA 130
L L+ Y +PG L ++GP+G+GK+T++D ++ + + G++L G T L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLP---- 70
Query: 131 AYVTQDDNL-IG----------TLTVRETISYSARLRLPDKMPWS--------EKRTLVE 171
Q IG LTV E + + DK ++ E++ +E
Sbjct: 71 --EHQIARAGIGRKFQKPTVFENLTVFENLELALP---RDKSVFASLFFRLSAEEKDRIE 125
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ +GL D AD + G +S G+++ + I + ++ P+LL LDEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180
Query: 232 FVTQTLRCLSRDGRTVI 248
+ L+ L+ +V+
Sbjct: 181 KTAELLKSLAGK-HSVV 196
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-12
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 13/212 (6%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125
++ VL L +PG ++GPSGSGKSTL L RL G +L++G +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTL-TKLLQRL--YTPQHGQVLVDGVDLAIA 524
Query: 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
V +N++ + ++R+ I+ + + + K I E L
Sbjct: 525 DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE--LPQG 582
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
+T +G +SGG+R+R++IA ++ PR+L DE TS LD + + + +R + R
Sbjct: 583 YNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR 641
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
GRTVI H+ S+ DR+ +L G+
Sbjct: 642 -GRTVIIIAHRLST--VRACDRIIVLEKGQIA 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (160), Expect = 7e-12
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+T+LMGP+GSGK+T L L+ + S SG +LL G S V + +G
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR----SIFNYRDVLEFRRRVG 104
Query: 142 TLTVRETI-------SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
L R + A +R +P E R + + + E+GL D + + R
Sbjct: 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR- 163
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG+++ + +A + + P +L LDEPTS LD + + +R L+ D TVI H
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHN- 221
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ + DR L G+ V G T F
Sbjct: 222 LAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L+ ++ G A++G +GSGKSTL L+ L +GTI + G LS T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGG--MVLSEETVW 77
Query: 131 ------AYVTQ--DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
V Q D+ +G TV++ +++ +P E V++ + ++G++D
Sbjct: 78 DVRRQVGMVFQNPDNQFVGA-TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDF 133
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
+ L SGG+++RV+IA + ++P ++ LDE TS LD V +T+R L
Sbjct: 134 LNREPH--RL---SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ SI E + DR+ +++ G+ + G F+
Sbjct: 189 QKGITVLSITHDLDEAAQA-DRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 8e-12
Identities = 51/189 (26%), Positives = 71/189 (37%), Gaps = 79/189 (41%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++G SGSGK+TLL+ALS+RLA +A G Y +D L
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDA-----------------GEVHYRMRDGQLR 73
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL--QDCAD-------------- 184
+ +E+R L+ RT E G Q D
Sbjct: 74 DLYA----------------LSEAERRRLL-RT--EWGFVHQHPRDGLRMQVSAGGNIGE 114
Query: 185 --TVIGNWHLRGI-------------------------SGGERRRVSIALEILMRPRLLF 217
+G H I SGG ++R+ IA ++ PRL+F
Sbjct: 115 RLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
Query: 218 LDEPTSGLD 226
+DEPT GLD
Sbjct: 175 MDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 8e-12
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 25/238 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILL 118
V + G+ V + + + GT+ AL+GPSG GK+T L A++ L A ++G ILL
Sbjct: 10 VNIYYGDKQAV-KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68
Query: 119 NGHKTKLSFGTA----------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
+G +G V Q N T++V + + A L+L
Sbjct: 69 DGQDI---YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLME 123
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+ ER++ L D + G+SGG+++R+ IA + + P +L +DEPTS LD A
Sbjct: 124 VAERSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182
Query: 229 AAFFVTQTLRCLSRDGRTVIAS--IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + L + +I + +HQ + + D G V G T F
Sbjct: 183 STARIEDLMTDLKKVTTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAAY--VTQDDN 138
G L+GPSG GK+TLL ++ A GTI G T+L Y V Q
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQKRDYGIVFQSYA 86
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISG 197
L LTV + I+Y + R M +E V ++++ GL G +SG
Sbjct: 87 LFPNLTVADNIAYGLKNR---GMGRAEVAERV-AELLDLVGLPGSERKYPGQ-----LSG 137
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G+++RV++A + P LL LDEP S LD+ + +R L R G T I H
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD-QE 196
Query: 257 EVFELFDRLYLLSGGKTVYFG 277
E + DR+ +++ G G
Sbjct: 197 EALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 43/260 (16%)
Query: 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RL 106
+ R+ KDL + G H V E + EP ++TA +GPSG GKST+L L+ +
Sbjct: 2 AKRIDVKDLNIYY----GSFHAV-EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56
Query: 107 ASNAFLSGTILLNGHKTKLSFG----------TAAYVTQDDNLIGTLTVRETISYSARLR 156
A + G +LL+G +G T V Q N T+++R+ + A L+
Sbjct: 57 IPGARVEGEVLLDGEDL---YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLK 111
Query: 157 LPDKMPWSEKRTLVERTIIEMGL----QDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
L + LVE+++ L +D D G G+SGG+++R+ IA I +
Sbjct: 112 LNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-----GLSGGQQQRLCIARAIAVE 166
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDR--LYLL 268
P +L +DEP S LD + + + L +D VI + H Q ++ V D+ + L
Sbjct: 167 PDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HNMQQAARV---SDQTAFFNL 222
Query: 269 SG----GKTVYFGETSAAFE 284
G+ V +T F
Sbjct: 223 EATGKPGRLVEIDDTEKIFS 242
|
Length = 258 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 23/205 (11%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++ GE L+ G + GP+G+GK+TLL L+ L +G +
Sbjct: 5 AENLSCERGERTL-FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP---DAGEVY 60
Query: 118 LNGHKTKLSFGTAA----YVTQDDNLIGTLTVRETISYSARL--RLPDKMPWSEKRTLVE 171
G + + Y+ + LT E + + R W E V
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW-EALAQV- 118
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
GL D +G +S G++RRV++A L L LDEP + LD
Sbjct: 119 ------GLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSS 256
+T + + G V+ + HQP
Sbjct: 168 LLTALMAAHAAQGGIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 38/180 (21%)
Query: 57 LTVMVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+T +V+L N G+ VL ++ +PG + L+GP+G+GKSTL+ + +A +
Sbjct: 1 MTSLVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-- 57
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEK 166
G I KL G YV Q L TL + T++ RLR P D +P + K
Sbjct: 58 -EGVIK---RNGKLRIG---YVPQKLYLDTTLPL--TVNRFLRLR-PGTKKEDILP-ALK 106
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R +I+ +Q +SGGE +RV +A +L RP+LL LDEPT G+D
Sbjct: 107 RVQAGH-LIDAPMQK-------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 1e-11
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTIL 117
V LS G + L G++ E LTAL+GPSG GKST L L+ R+ N ++G I
Sbjct: 10 VHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIK 67
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGT------LTVRETISYSARLR-LPDKMPWSEKRTLV 170
G S + ++ ++ +V + ++Y ++ + DK ++ V
Sbjct: 68 FEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR---V 124
Query: 171 ERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
E ++ + + ++ D + + + + SGG+++R+ IA + +RP+++ LDEPTS LD +
Sbjct: 125 EESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + +TL L T I H + + D+ L G + G T F
Sbjct: 183 SSEIEETLMELKHQ-YTFIMVTHN-LQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---HKTKLSFGT----AAYVT 134
+TAL+GPSG GKST L L+ + L A + G ILL+G + + V
Sbjct: 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVF 93
Query: 135 QDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q N ++ E ++Y R+ + DK +E+ VER++ L D + L
Sbjct: 94 QKPNPFPK-SIFENVAYGLRVNGVKDKAYLAER---VERSLRHAALWDEVKDRLHESAL- 148
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 252
G+SGG+++R+ IA + + P +L +DEP S LD A + + + L T+I H
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHN 207
Query: 253 -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
Q ++ V ++ Y+ GK + G T F
Sbjct: 208 MQQAARVSDVTAFFYM---GKLIEVGPTEQIF 236
|
Length = 253 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 41/267 (15%)
Query: 36 WKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
W E+ F + A L+ KDL V G+ ++G+ E +TAL+GPSGSGK
Sbjct: 6 WNERHIITFPEEEIA-LSTKDLHVYY----GKKE-AIKGIDMQFEKNKITALIGPSGSGK 59
Query: 96 STLLDALSSRL---ASNAFLSGTILLNG----------HKTKLSFGTAAYVTQDDNLIGT 142
ST L +L+ R+ A ++G IL G ++ + G V Q N
Sbjct: 60 STYLRSLN-RMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGM---VFQRPNPF-A 114
Query: 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWHLRG--ISGG 198
++ E I+++ +K+ L E I+E L+ A D V + H +SGG
Sbjct: 115 KSIYENITFALERA-----GVKDKKVLDE--IVETSLKQAALWDQVKDDLHKSALTLSGG 167
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSS 256
+++R+ IA I ++P +L +DEP S LD + + +T+ L + T+I H Q ++
Sbjct: 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAA 226
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAF 283
+ YL G + + +T F
Sbjct: 227 RASDYTAFFYL---GDLIEYDKTRNIF 250
|
Length = 267 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT----AAYVT 134
G + GPSG GKSTLL ++S ++ SGT+L G + L +Y
Sbjct: 31 RAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHL 192
Q L G TV + + PW + + I L+ DT++ ++
Sbjct: 88 QTPTLFGD-TVYDNL----------IFPWQIRNQQPDPAIFLDDLERFALPDTIL-TKNI 135
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGGE++R+S+ + P++L LDE TS LD
Sbjct: 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 62/211 (29%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKTKLSF---GTAAYVTQDD 137
G + AL+G SGSGKS A+ L SG ILL+G A + Q
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ-- 69
Query: 138 NLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
N T+ A LR K + R L+ + +GL D + + + +
Sbjct: 70 NPRTAFNPLFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEE--VLKKYPFQL 126
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255
SGG +RV IAL +L+ P L DEPT+ LD V + LR L + T I I
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 256 SEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
V + D + ++ G+ V E E F
Sbjct: 187 GVVARIADEVAVMDDGRIV---ERGTVKEIF 214
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGH-- 121
+L L+ EPG +TAL+G +G+GKSTLL AL+ L A ++G + LNG
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 122 ----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+L+ A + Q + RE + R P R T +
Sbjct: 74 AAIDAPRLA-RLRAVLPQAAQPAFAFSAREIVLLG---RYP------HARRAGALTHRDG 123
Query: 178 GLQDCADTVIGNWHLRG-----ISGGERRRVSIALEILMR----------PRLLFLDEPT 222
+ A + G L G +SGGE RV A +L + PR L LDEPT
Sbjct: 124 EIAWQALALAGATALVGRDVTTLSGGELARVQFA-RVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRT-VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ LD A + T+R L+RD V+A +H P+ DR+ +L+ G V G
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 48/259 (18%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V + +G+ V L G ++G SGSGKS AL LA+N
Sbjct: 13 LDVKDLRVTFSTPDGDVTAV-NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71
Query: 112 LSGTILLNGHK---------TKLSFGTAAYVTQD------------DNLIGTLTVRETIS 150
+ G+ NG + KL + + QD + L+ L + + +S
Sbjct: 72 IGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 131
Query: 151 ----YSARLRLPD--KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204
+ +R+ D KMP + KR M + + SGG R+RV
Sbjct: 132 KAEAFEESVRMLDAVKMPEARKR---------MKM-----------YPHEFSGGMRQRVM 171
Query: 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264
IA+ +L RP+LL DEPT+ LD + L L R+ T I I V + D+
Sbjct: 172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK 231
Query: 265 LYLLSGGKTVYFGETSAAF 283
+ ++ G+T+ +G F
Sbjct: 232 VLVMYAGRTMEYGNARDVF 250
|
Length = 330 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT-------AAYVT 134
G+ TAL+G +GSGKST+ ++ L + + I ++G L+ T V
Sbjct: 33 GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG--ITLTAKTVWDIREKVGIVF 90
Query: 135 QD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q+ DN TV + +++ R +P E +V + ++G+ D D+ N
Sbjct: 91 QNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPAN---- 143
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG+++RV+IA + + P+++ LDE TS LD A + + +R L + + SI
Sbjct: 144 -LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCP 294
E + D++ +L GK + G F E + G P
Sbjct: 203 DIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 47/228 (20%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
E G+ TA +G +GSGKST++ LLNG L T V DD L
Sbjct: 31 EDGSYTAFIGHTGSGKSTIMQ----------------LLNG----LHVPTQGSVRVDDTL 70
Query: 140 IGTLTVRETI-SYSARLRLPDKMPWSEKRTLVERTIIE---MGLQ-------DCADTVIG 188
I + + + I ++ L + P S+ L E T+++ G Q +
Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPESQ---LFEETVLKDVAFGPQNFGVSQEEAEALARE 127
Query: 189 NWHLRGI------------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
L GI SGG+ RRV+IA + M P++L LDEPT+GLD +
Sbjct: 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L + G T++ H +V D +Y+L GK V G+ F+
Sbjct: 188 FKKLHQSGMTIVLVTHL-MDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 3e-11
Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 26/235 (11%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---H 121
+T +LEG++ +TA++GPSG GKST L L+ + L S + G + +
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 122 KTKLSFG----TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+ +++ + V NL ++V + ++Y ++ + W K + + I+E
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLF-PMSVYDNVAYGVKI-----VGWRPKLEIDD--IVES 129
Query: 178 GLQDCA--DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
L+D D + H + SGG+++R+ IA + ++P++L +DEP GLD A+ V
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 283
++ L + + +V L D G G+ V FG T F
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244
|
Length = 261 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 67/217 (30%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLA-----------SNAFLSGTILLNGHKTKLSFGT 129
PG + ++G SGSGKSTLL L+ RLA S A L L + +L
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 130 AAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTL----VERTIIEMGLQDCA 183
+V Q+ D L + V + RL + R +E I+ D
Sbjct: 88 WGFVHQNPRDGL--RMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL 145
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
R SGG ++R+ IA ++ RPRL+F+DEPT GLD + + LR L RD
Sbjct: 146 P--------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
G VI H L RL ++ G+ V G T
Sbjct: 198 LGLAVIIVTHDLGV-ARLLAQRLLVMQQGRVVESGLT 233
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-11
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD 137
E +TAL+GPSG GKST L +++ + L +A G IL G + D
Sbjct: 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG------------LNILD 92
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWS-------------EKRTLVERTIIEMGLQDCA- 183
+ I + +R I + P+ P S E+R V I+E L A
Sbjct: 93 SNINVVNLRREIGMV--FQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 184 -DTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
D V H +S GG+++R+ IA + M+P +L LDEP S LD + + + + L
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ +I + + + DR G V + +T F
Sbjct: 211 KEEYSIIIVT--HNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 43/218 (19%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTI----LLNGHKTKLSFGTAAYVTQDDNLIGT 142
++G SGSGKSTL+ + + S GTI + G K ++
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE 113
Query: 143 LTVRETISYSARLRLPD-------------------KMPWSEKRTLVERTIIEMGLQDCA 183
L R +S + P+ + SE + L + + +MGL D
Sbjct: 114 L--RRRVSMV--FQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDS- 168
Query: 184 DTVIGNWHLR----GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+L G+SGG++RRV+IA + ++P +L DEPT+GLD + Q +
Sbjct: 169 -------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ +TV H V E+ D + ++ GK + G
Sbjct: 222 AKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-------AY 132
G L+G SGSGKSTL AL + S G I +G LS
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQV 367
Query: 133 VTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V QD L +TV + I R+ P K+ +E+ V + E+GL D N
Sbjct: 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGL----DPATRNR 422
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ SGG+R+R++IA ++++P L+ LDEPTS LD + V LR L +
Sbjct: 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF 482
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
I + V L R+ ++ GK V G T A F
Sbjct: 483 ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 55/247 (22%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTI--LLNGHKTK 124
L+ ++ G A++G +GSGK+T ++ L NA L +GTI + K K
Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHL------NALLLPDTGTIEWIFKDEKNK 74
Query: 125 LSFGTAAYVTQDDNL-----------------IGTL-----------TVRETISYSARLR 156
V + + +G + T+ + I +
Sbjct: 75 KKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM 134
Query: 157 LPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLR---GISGGERRRVSIALEILMR 212
K ++KR IE+ GL + ++ R +SGG++RRV++A + M
Sbjct: 135 GVSKEE-AKKRA---AKYIELVGLDE-------SYLQRSPFELSGGQKRRVALAGILAME 183
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P L DEPT+GLD + + L++ G+T+I H + V E R GK
Sbjct: 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN-VLEWTKRTIFFKDGK 242
Query: 273 TVYFGET 279
+ G+T
Sbjct: 243 IIKDGDT 249
|
Length = 305 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT--------AAY 132
G + +MG SGSGKSTL+ L+ RL G IL++G KLS +
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLN-RL--IEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q L+ TV E +++ ++ +P +E+ + +GL+ AD
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE--- 164
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASI 251
+SGG ++RV +A + P +L +DE S LD + L ++ +T++
Sbjct: 165 --LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E + DR+ ++ G+ V Q G P L NP++ ++R
Sbjct: 223 HD-LDEALRIGDRIAIMKDGEIV-------------QVGTPEEILLNPANDYVR 262
|
Length = 386 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 6e-11
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 23/228 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILL---NGHKT 123
H VL+ + +TA++GPSG GKSTLL AL+ + + S A L G +LL N +
Sbjct: 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76
Query: 124 KLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
L V Q N ++ + +++ R+ + + + L E ++E L
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM-----LGTTAQSRLDE--VVEKSL 128
Query: 180 QDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ A D V N H G +SGG+++R+ IA + + P ++ +DEP S LD + + +
Sbjct: 129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ L ++ IA + + D L G V +G T F
Sbjct: 189 LMQELKQN--YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 6e-11
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTK 124
+ ++L+ + ++TAL+GPSG GKST + L+ + L G I L+G
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG---V 70
Query: 125 LSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ A V + +G + ++ + ++Y R+ D + E+R VE ++
Sbjct: 71 DIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER--VEESLK 128
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L D + L G+SGG+++R+ IA I + P ++ +DEP S LD + +
Sbjct: 129 AAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 236 TLRCLSRDGRTVIAS 250
+ L D VI +
Sbjct: 188 LIHKLKEDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-11
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+TA++GPSG GKST L A++ + L + +G ++ +G F + + IG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK---IG 123
Query: 142 TL---------TVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNW 190
+ ++ + I+Y RL + DK E +VE+++ + L D +D + N
Sbjct: 124 MVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEE---IVEKSLRKAALWDEVSDRLDKN- 179
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
G+SGG+++R+ +A + + P +L LDEPTS LD A
Sbjct: 180 -ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217
|
Length = 286 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG--------TAAYVTQDD 137
+MG SGSGKSTLL ++ RL SG +L++G +S + V Q
Sbjct: 55 IMGLSGSGKSTLLRCIN-RLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
L+ TV E +++ ++ +P +E+ + +GL+ +SG
Sbjct: 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSG 163
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G ++RV +A + + P +L +DE S LD + L L + +T++ H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-D 222
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVK 315
E L DR+ ++ G+ V Q G P L NP++ ++R D+ K
Sbjct: 223 EALRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRGVDRAK 268
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 7e-11
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 22/230 (9%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKT 123
G+ H L+G++ E ++ A +GPSG GKST L + + L L G I ++G
Sbjct: 14 GDFH-ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72
Query: 124 KLSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+ V + +G + ++ E ++Y R+ + +R VE T+
Sbjct: 73 ---YDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR--VEETL 127
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
L D + +SGG+++R+ IA + + P +L +DEP S LD + V
Sbjct: 128 KGAALWDEVKDKLKESAF-ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE 186
Query: 235 QTLRCLSRDGRTVIASIH-QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + L +D VI + + Q ++ V + Y+ G+ V + +T F
Sbjct: 187 ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM---GEMVEYDDTKKIF 233
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 33/185 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G +TAL+GPSG GKST+L +L+ + L L G +L +G T Y + D +
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--------TDLYDPRVDPV 90
Query: 140 -----IGTL---------TVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQD-CA 183
IG + ++ E I++ AR+ M LVER++ + + D C
Sbjct: 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDM-----DELVERSLRKAAVWDECK 145
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D + N +SGG+++R+ IA I + P ++ +DEP S LD + + +T+ L ++
Sbjct: 146 DKL--NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN 203
Query: 244 GRTVI 248
VI
Sbjct: 204 FTIVI 208
|
Length = 269 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 9e-11
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 53/231 (22%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125
V+E ++ G + L+GP+G+GK+T + + +A G I+++ L
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74
Query: 126 -SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+ Y+ Q+ DNL+ L +R+ +S +E+R
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS-------------AEQR------- 114
Query: 175 IEMGLQDCADTVIGNWHL--------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+D A+ ++ +H+ + +SGGERRRV IA + P+ + LDEP +G+D
Sbjct: 115 -----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + + + L G V+ + H E + +R Y++S G + G
Sbjct: 170 PISVIDIKRIIEHLRDSGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 9e-11
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 83 TLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
++TAL+GPSG GKST + L+ + L N + G + + G + V + +
Sbjct: 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI---YEPDVDVVELRKNV 95
Query: 141 GT---------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
G +++ + ++Y R+ +K + +VE + L D + +
Sbjct: 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANK---KDLDGVVENALRSAALWDETSDRLKSPA 152
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
L +SGG+++R+ IA + ++P+++ DEPTS LD + + + L +D VI +
Sbjct: 153 L-SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTH 211
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + +L+ G+ + FG+T F
Sbjct: 212 NMQQAARISDYTGFFLM--GELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 39/223 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----HKTKLS-------- 126
E G L+G +GSGKSTL+ L+ L SG I+++G K KLS
Sbjct: 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGL 87
Query: 127 -FGTAAYVTQDDNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGL--QDC 182
F Y ++ T+ + I++ L L + E V+R + +GL +D
Sbjct: 88 VFQYPEYQLFEE------TIEKDIAFGPINLGLSE----EEIENRVKRAMNIVGLDYEDY 137
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D +SGG++RRV+IA + M P++L LDEPT+GLD + ++ L +
Sbjct: 138 KDKSPFE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192
Query: 243 D-GRTVIASIHQPSSE-VFELFDRLYLLSGGKTVYFGETSAAF 283
+ T+I H S E V +L DR+ +++ GK G F
Sbjct: 193 EYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
Length = 287 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 59 VMVTLSNGETH----NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
VM++ H L ++ + G + L+G +G+GK+TLL L + SG
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SG 60
Query: 115 TILLNGHKTKLSFGTA-------AYVTQDDNLIGTLTVRETIS----------YSARL-R 156
I+ +G K + TA A V + + +TV E ++ + R+
Sbjct: 61 RIVFDG-KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216
+ + P L ER I G +SGGE++ ++I ++ +PRLL
Sbjct: 120 VYELFP-----RLHERRIQRAGT---------------MSGGEQQMLAIGRALMSQPRLL 159
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
LDEP+ GL + T+ L G T+ + Q +++ +L DR Y+L G V
Sbjct: 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILL 118
V+ S G N+L ++ + + T ++G SGSGKSTL ++L F SG ILL
Sbjct: 479 VSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTL-----AKLLVGFFQARSGEILL 533
Query: 119 NGH------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
NG + L Y+ Q+ I + ++ E + A+ + W+ +
Sbjct: 534 NGFSLKDIDRHTLR-QFINYLPQEP-YIFSGSILENLLLGAKENVSQDEIWAACEIAEIK 591
Query: 173 TIIE---MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
IE +G Q T + ISGG+++R+++A +L ++L LDE TS LD+
Sbjct: 592 DDIENMPLGYQ----TELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ L L+ +T+I H+ S V + D++ +L GK + E + E +
Sbjct: 647 EKKIVNNL--LNLQDKTIIFVAHRLS--VAKQSDKIIVLDHGKII---EQGSHDELLDRN 699
Query: 290 GF 291
GF
Sbjct: 700 GF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 18/212 (8%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG-------HKTKLSFGTAAYVT 134
+TA +GPSG GKST L + + N + G + ++G L V
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVF 92
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHL 192
Q N ++ + ++Y +L + ++K+ +VE+++ +GL + + +
Sbjct: 93 QKPNPFPK-SIYDNVAYGPKLH---GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF 148
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+++R+ IA I ++P +L +DEP S LD A + ++ L ++ T+I H
Sbjct: 149 E-LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTH 206
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ ++ DR+ G+ V + T F+
Sbjct: 207 S-MKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 27/152 (17%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHK-TKLS-----FGTAAYVT 134
LT L+GPSG GK+T+L RL + F SG I+L+G T + T V
Sbjct: 43 LT-LLGPSGCGKTTVL-----RLIA-GFETPDSGRIMLDGQDITHVPAENRHVNT---VF 92
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
Q L +TV E +++ R++ K P +E V + + L++ A
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQ----- 144
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG+++RV+IA ++ +P++L LDE S LD
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASN--AF-LSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
+TA++GPSG GK+TLL +++ R+ + F + G I G + + VT+ +
Sbjct: 31 ITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKG---QDIYDPQLDVTEYRKKV 86
Query: 141 GT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
G +++ + +++ R+ + K +VE ++ + L D + + N
Sbjct: 87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR---IVEESLKKAALWDEVKSEL-NK 142
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGG+++R+ IA + + P ++ LDEPTS LD A + + L LS + VI +
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ + D + + G+ + +G T
Sbjct: 203 --HNIGQAIRIADYIAFMYRGELIEYGPTR 230
|
Length = 250 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 31/202 (15%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKT 123
H L +T G L+GPSG+GKS+LL L+ L SGT+ + G+
Sbjct: 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-------LLEMPRSGTLNIAGNHF 66
Query: 124 KLSFGTAA-----------YVTQDDNLIGTLTVRET-ISYSARLRLPDKMPWSEKRTLVE 171
S + V Q NL LTV++ I R+ K + E
Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSK---DQALARAE 123
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ + + L+ AD + L +SGG+++RV+IA ++M P++L DEPT+ LD
Sbjct: 124 KLLERLRLKPYAD----RFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 232 FVTQTLRCLSRDGRTVIASIHQ 253
+ +R L+ G T + H+
Sbjct: 179 QIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL---LDALSSRLASNAFLSGTIL--LNGHKTKL 125
VL ++ E G L+G SG GKSTL L L G L L+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
V QD + R T+ LR + SE++ + + +GL+
Sbjct: 86 FRRDVQLVFQDS--PSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-- 141
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ R +SGG+ +R++IA + ++P+L+ LDE S LD + + LR L +
Sbjct: 142 --EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
T I V R+ ++ G+ V
Sbjct: 200 FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 35/200 (17%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L L+ +PG L L+GP+G+GK+TL+D ++ + G +L +G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPEHR 77
Query: 132 YVT-------QDDNLIGTLTVRETI------------SYSARLRLPDKMPWSEKRTLVER 172
Q + LTVRE + S ARLR +E+R ++
Sbjct: 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-------AEERRRIDE 130
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232
+ +GL D D + +S G+++ + I + + P+LL LDEP +G+ A
Sbjct: 131 LLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 233 VTQTLRCLSRDGRTVIASIH 252
+ L+ L+ +++ H
Sbjct: 186 TAELLKSLAG-KHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG 128
+VL ++ G + A++G SGSGKSTLL L + SG ++ NG +KLS
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDVIFNGQPMSKLSSA 79
Query: 129 TAA--------YVTQDDNLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEM 177
A ++ Q +L+ T E ++ MP +K + +EM
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVA----------MPLLIGKKKPAEINSRALEM 129
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L N +SGGER+RV+IA ++ PRL+ DEPT LD+ A + Q L
Sbjct: 130 -LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
Query: 238 RCLSR 242
L+R
Sbjct: 189 GELNR 193
|
Length = 233 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------- 121
+ V++ ++ PG L+G SGSGKST AL + S G I +G
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS----QGEIWFDGQPLHNLNR 354
Query: 122 KTKLSFGTAAYVT-QDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+ L V QD N L L V + I R+ P + +++ V + E+G
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT-LSAAQREQQVIAVMEEVG 413
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L D + + SGG+R+R++IA ++++P L+ LDEPTS LD
Sbjct: 414 L----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 43/239 (17%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNG--- 120
+ L ++ + + G +++G +GSGKST L+D L L + SG I+++G
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL---LEAE---SGQIIIDGDLL 71
Query: 121 ---------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLV 170
HK + F D+ +G TV + +++ L +K +P E + V
Sbjct: 72 TEENVWDIRHKIGMVFQNP-----DNQFVGA-TVEDDVAFG----LENKGIPHEEMKERV 121
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +G+QD + +SGG+++RV+IA + MRP+++ LDE TS LD
Sbjct: 122 NEALELVGMQDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+ +T++ + D TVI SI EV L DR+ ++ G+ TS E F++
Sbjct: 177 LELIKTIKGIRDDYQMTVI-SITHDLDEV-ALSDRVLVMKNGQV---ESTSTPRELFSR 230
|
Length = 279 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 39/240 (16%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGH--------KT--KLS 126
E G + LMG SGSGKSTLL A+ + L N G++L+ +G T +L
Sbjct: 48 EEGEICVLMGLSGSGKSTLLRAV-NGL--NPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+ V Q L+ TV E +++ ++ MP +E+R V+ + +GL AD
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRK 161
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGR 245
G +SGG ++RV +A +L +DEP S LD + L S+ +
Sbjct: 162 PGE-----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK 216
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
T++ H E ++ +R+ ++ GG+ + Q G P + NP++ ++
Sbjct: 217 TIVFVSHD-LDEALKIGNRIAIMEGGRII-------------QHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKLSFGTA-AYV 133
A+ G A++GP+G+GK+TL++ L G IL++G T+ S + A V
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATV 414
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
QD L ++RE I R D+ + + I DT++G R
Sbjct: 415 FQDAGLFNR-SIRENIRL-GREGATDEEVYEAAKAAAAHDFILKRSNG-YDTLVGE---R 468
Query: 194 G--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
G +SGGER+R++IA IL +L LDE TS LD V + L ++ T I
Sbjct: 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFI 525
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 38/224 (16%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------- 121
VL+ ++ +PG ++G +GSGKS+LL AL RL + SG+IL++G
Sbjct: 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELS--SGSILIDGVDISKIGLH 74
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETI----SYSARLRLPDKMPWS--EKRTLVERT 173
++++S + QD L + T+R + YS D+ W E+ L E
Sbjct: 75 DLRSRISI-----IPQDPVLF-SGTIRSNLDPFGEYS------DEELWQALERVGLKEFV 122
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
G D G +S G+R+ + +A +L + ++L LDE T+ +D +
Sbjct: 123 ESLPGGLDTVVEEGGE----NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+T+R + TV+ H+ + + + DR+ +L G+ V F
Sbjct: 179 QKTIR-EAFKDCTVLTIAHRLDT-IID-SDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 33/196 (16%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA 130
L+G+T + PG + L G SG+GKSTLL + +A G I +GH T+L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74
Query: 131 AY-------VTQDDNLIGTLTVRETISYSARLRLPDKMPW-------SEKRTLVERTIIE 176
+ + QD +L+ TV + ++ +P + R V + +
Sbjct: 75 PFLRRQIGMIFQDHHLLMDRTVYDNVA----------IPLIIAGASGDDIRRRVSAALDK 124
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+GL D A N+ ++ +SGGE++RV IA ++ +P +L DEPT LD A + + +
Sbjct: 125 VGLLDKAK----NFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179
Query: 237 LRCLSRDGRTVIASIH 252
+R G TV+ + H
Sbjct: 180 FEEFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGH 121
L+ + + G ++G +GSGKST+ + NA L G + ++G
Sbjct: 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHM------NALLIPSEGKVYVDGL 72
Query: 122 KTKLSFGT------AAYVTQD-DNLIGTLTVRETISYSARLRLPDKM--PWSEKRTLVER 172
T A V Q+ DN I V E +++ P+ + P E R V+
Sbjct: 73 DTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGIPPEEIRERVDE 127
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232
++ ++G+ + HL +SGG+++RV+IA + MRP + DEPT+ LD +
Sbjct: 128 SLKKVGMYEYRRHAP---HL--LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182
Query: 233 VTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
V T++ L++ G T+I H E E DR+ ++ GK V G
Sbjct: 183 VVNTIKELNKKYGITIILITHY-MEEAVEA-DRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 27/230 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGH---KT 123
H+ L+ + +TA++GPSG GKST + L+ ++ N L+G + NG K
Sbjct: 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 124 KLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
K+ V Q N ++ + ++Y R+ K+ L E I+E L
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH-----GTKNKKKLQE--IVEKSL 136
Query: 180 QDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+D A D V H + +SGG+++R+ IA + P +L +DEPTS LD + + +
Sbjct: 137 KDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196
Query: 236 TLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ L ++ T++ H Q ++ V D+ G+ V +T+ F
Sbjct: 197 LILKL-KEKYTIVIVTHNMQQAARV---SDQTAFFYMGELVECNDTNKMF 242
|
Length = 259 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 24/218 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG 128
VL+G+ G + AL+G +G+GKSTL+ ++ + + SGT+ + G+ +L+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81
Query: 129 TA----AY-VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y V Q+ L L+V+E I + LP + +K +++ + +G Q
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK---MKQLLAALGCQLDL 134
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D+ G+ + +R+ V I L LMR R+L LDEPT+ L A + +R L
Sbjct: 135 DSSAGSLEV-----ADRQIVEI-LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
G ++ H+ E+ +L DR+ ++ G G+T+
Sbjct: 189 QGVGIVFISHK-LPEIRQLADRISVMRDGTIALSGKTA 225
|
Length = 510 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 45/223 (20%)
Query: 85 TALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142
TA +GPSG GKSTLL + + L N + G I L+G Y + D +
Sbjct: 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI--------YDKKVD--VAE 103
Query: 143 LTVR----------------ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--D 184
L R E + Y RL+ + +R L E +E L+ A D
Sbjct: 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQ-----GINNRRVLDE--AVERSLRGAALWD 156
Query: 185 TVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
V H G+SGG+++R+ IA I + P +L LDEPTS LD + + + + L
Sbjct: 157 EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS 216
Query: 243 DGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
VI + H Q ++ V + +Y+ GK V +G+T F
Sbjct: 217 KYTIVIVT-HNMQQAARVSDYTAFMYM---GKLVEYGDTDTLF 255
|
Length = 272 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 7e-10
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 45/225 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G+ TAL+G +GSGKSTLL L+ L G + + D +
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVG----------------DIVVSS 72
Query: 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE----------MGLQDCADTVIGNWH 191
T +E ++ + + P S+ L E T+++ + +
Sbjct: 73 TSKQKEIKPVRKKVGVVFQFPESQ---LFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLE 129
Query: 192 LRGIS------------GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ G++ GG+ RRV+IA + M P +L LDEPT+GLD A + Q
Sbjct: 130 MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + G+TV+ H +V + D +YLL G + G S F+
Sbjct: 190 IHQSGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 9e-10
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL 125
T +EG++ +TA++GPSG GKST + L+ S L + G + G
Sbjct: 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI-- 76
Query: 126 SFGTAAYVTQDDNLIGT---------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + + IG +++ E ++Y +R+ K+P ++ +VE +
Sbjct: 77 -YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKG 133
Query: 177 MGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L Q+ D + N G+SGG+++R+ IA + ++P++L +DEP S LD A V +
Sbjct: 134 AALWQEVKDKL--NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEE 191
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 283
+ L + IA + + + D S G+ V FG T+ F
Sbjct: 192 LIHSLRSE--LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 19/226 (8%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
+T L ++ + G + ++G SG+GKSTL+ ++ SG+++++G T
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTT 71
Query: 125 LSFG--TAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
LS T A + Q NL+ + TV ++ L D P E + V + +
Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALV 128
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
GL D D+ N +SGG+++RV+IA + P++L DE TS LD A + + L
Sbjct: 129 GLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ ++R I I V + D + ++S G+ + G S F
Sbjct: 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 42/245 (17%)
Query: 55 KDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
K+ +VM+ + N +N L+ ++ G A++G +GSGKST+ L+ L
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 109 NAFLSGTILLNGHKTKLSFGTAAY-------VTQ--DDNLIGTLTVRETISYSARLRL-- 157
SG I ++G +S + Q D+ IG TV + I++ +
Sbjct: 62 Q---SGEIKIDG--ITISKENLKEIRKKIGIIFQNPDNQFIG-ATVEDDIAFGLENKKVP 115
Query: 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR----GISGGERRRVSIALEILMRP 213
P KM + II+ D A V +L +SGG+++RV+IA + + P
Sbjct: 116 PKKM----------KDIID----DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273
++ DE TS LD + + + L + + + SI E L D++ + S GK
Sbjct: 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKL 220
Query: 274 VYFGE 278
+ G+
Sbjct: 221 IAQGK 225
|
Length = 271 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 1e-09
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+S GER+ V IA + RLL LDEPT+ L A + + +R L G VI H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 255 SSEVFELFDRLYLLSGGKTV 274
EVFE+ DR+ +L G+ V
Sbjct: 143 -DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHK--TKLS 126
VL L + G A++G SG GKSTLL L+ +A L+GT L + T+L
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
F QD L+ V + + L K W R + + +GL D A
Sbjct: 87 F-------QDARLLPWKKVIDNVG------LGLKGQW---RDAALQALAAVGLADRA--- 127
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 245
W +SGG+++RV++A ++ RP LL LDEP LD+ + + L + G
Sbjct: 128 -NEWP-AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGK 272
TV+ H SE + DR+ L+ GK
Sbjct: 186 TVLLVTHD-VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 39/220 (17%)
Query: 85 TALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142
TA +GPSG GKSTLL + L G ILL+G QD L+
Sbjct: 42 TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP-------KQDIALLRA 94
Query: 143 -------------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVI 187
+++ + I++ +RL +K+ +E + ER +E L A + V
Sbjct: 95 KVGMVFQKPTPFPMSIYDNIAFG--VRLFEKLSRAE---MDER--VEWALTKAALWNEVK 147
Query: 188 GNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
H G +SGG+++R+ IA I +RP +L LDEP S LD + + + + L +D
Sbjct: 148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-Y 206
Query: 246 TVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
TV+ H Q ++ + +YL G+ + FG T F
Sbjct: 207 TVVIVTHNMQQAARCSDYTAFMYL---GELIEFGNTDTIF 243
|
Length = 260 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G ++G +GSGKSTL L+ L G +L++G T G + + L+G
Sbjct: 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDT----GDFSKLQGIRKLVG 80
Query: 142 TL-----------TVRETISYSARLRLPDKM--PWSEKRTLVERTIIEMGLQDCADTVIG 188
+ TV E +++ P+ + P E R V+R + E+GL
Sbjct: 81 IVFQNPETQFVGRTVEEDLAFG-----PENLCLPPIEIRKRVDRALAEIGL--------E 127
Query: 189 NWHLRG---ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ R +SGG+ + V++A + M P L DE TS LD + V + ++ L G+
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
T++ H + E DR+ ++ GK V GE
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 25/195 (12%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTAAYVTQDDNLIGTLT 144
L+G +G+GKSTLL L+ + SGT+ + G + L G LT
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLLGLGGG--------FNPELT 100
Query: 145 VRETISYSARLR-LPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRR 202
RE I + RL L K E ++ IIE L D D ++ S G + R
Sbjct: 101 GRENIYLNGRLLGLSRK----EIDEKIDE-IIEFSELGDFIDL-----PVKTYSSGMKAR 150
Query: 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262
++ A+ + P +L +DE + D+A + LR L + G+TVI H PSS + L
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLC 209
Query: 263 DRLYLLSGGKTVYFG 277
DR +L GK + G
Sbjct: 210 DRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 3e-09
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 31/233 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
T +VL L + +TA +GPSG GKST L L+ N + GT H+ ++ F
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL---NDLIEGT----SHEGEIYF 146
Query: 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLP------DKMPWSEK------RTLVERTI 174
GT + I +L +R I + P D + + + R ++E+ I
Sbjct: 147 LGTNTRSKK----ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK-I 201
Query: 175 IEMGLQDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+E L+ A D V + G +SGG+++R+ IA I + P +L +DEPTS LD A
Sbjct: 202 VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + + L + +I + ++ + D G GET F
Sbjct: 262 AKIEELILELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG--------TA 130
E G + +MG SGSGKST++ L+ + G +L++G K+S
Sbjct: 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
A V Q L+ +TV + ++ L + E+R + ++GL++ A +
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA-----HS 160
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG R+RV +A + + P +L +DE S LD + L L + I
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
I E + DR+ ++ G+ V Q G P L NP++ ++R
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 24/202 (11%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSS---RLASN--AFL 112
S E VL+G++ G + A++G SGSGKSTL LD +S R+A A L
Sbjct: 16 SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL 75
Query: 113 SGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
L + F + Q +L+ LT + + +P E++ + R
Sbjct: 76 DADALAQLRREHFGF-----IFQRYHLLSHLTAAQNV------EVPAVYAGLERKQRLLR 124
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232
+ D V + +SGG+++RVSIA ++ +++ DEPT LDS +
Sbjct: 125 AQELLQRLGLEDRV--EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
Query: 233 VTQTLRCLSRDGRTVIASIHQP 254
V L L G TVI H P
Sbjct: 183 VMAILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 8e-09
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 83 TLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
++TAL+GPSG GKST L L+ + L + G ++ G K + + + I
Sbjct: 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG---KNIYSNNFDILELRRKI 90
Query: 141 GT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGN 189
G +++ + ISY ++ DK E +VE+++ + L + D + N
Sbjct: 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDE---IVEQSLKKSALWNEVKDKL--N 145
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ +SGG+++R+ IA + + P ++ +DEPTS LD
Sbjct: 146 TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
|
Length = 254 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 9e-09
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 84 LTALMGPSGSGKSTLL---DALSSRLASNAFLSGTILLNGHKTKLSFGT--------AAY 132
+TAL+GPSG GKST L + + N + IL + LS +
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISM 103
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q N ++ E ++Y R+R + E+R VE + L D +G+
Sbjct: 104 VFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEER--VENALRNAALWDEVKDRLGDLAF 160
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+++R+ IA + P +L DEPTS LD A + + + L ++ T++ H
Sbjct: 161 -NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTH 218
Query: 253 --QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
Q ++ V + +Y+ G+ + FG T F
Sbjct: 219 NMQQAARVSDYTAYMYM---GELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 38/195 (19%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSF--GTAAYVT 134
G AL+G SGSGKST+ + L+ + G ILL+GH L+ A V+
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVS 423
Query: 135 QDDNLIGTLTVRETISYSAR-----------LRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
Q+ +L T+ I+Y+ R+ M + K ++ GL
Sbjct: 424 QNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINK--------MDNGL---- 470
Query: 184 DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
DTVIG G+ SGG+R+R++IA +L +L LDE TS LD+ + + L L
Sbjct: 471 DTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 242 RDGRTVIASIHQPSS 256
++ RT + H+ S+
Sbjct: 528 KN-RTSLVIAHRLST 541
|
Length = 582 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G A++G +GSGKSTL L+ + SG +L++ H L FG +Y +Q +
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHP--LHFGDYSYRSQRIRM 91
Query: 140 I-----GTLTVRETIS--YSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWH 191
I +L R+ IS LRL + ++ + T+ ++GL D A +++
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----SYY 146
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
++ G+++R+ +A +++RP+++ DE + LD
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT------- 134
G +TA+MGPSG GK+TLL + ++A + G IL +G + Y
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSML 89
Query: 135 -QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q L + V + ++Y LR ++P + V + +GL+ A +
Sbjct: 90 FQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE---- 143
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG RR ++A I + P L+ DEP G D
Sbjct: 144 -LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
Length = 269 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 55/217 (25%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
H LE + +PG + + GP+GSGKSTLL +L R + G I + TK
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVS--EGDIRFHDIPLTK 381
Query: 125 LSF----GTAAYVTQ-----DDNLIGTLTV------RETISYSAR--------LRLPDKM 161
L A V+Q D + + + ++ I + AR LRLP
Sbjct: 382 LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGY 441
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLD 219
DT +G RG+ SGG+++R+SIA +L+ +L LD
Sbjct: 442 ----------------------DTEVGE---RGVMLSGGQKQRISIARALLLNAEILILD 476
Query: 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
+ S +D + LR +GRTVI S H+ S+
Sbjct: 477 DALSAVDGRTEHQILHNLR-QWGEGRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGGER+RV IA+ +L RP LL DEPT+ LD + + Q LR L ++ + I
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 292
S V +L DR+ ++ G+ V E + A F+ P
Sbjct: 217 LSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT- 129
V L + + G + G +G+GK+TLL L+ L SG I ++G +
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSR 82
Query: 130 -AAYVTQDDNLIGTLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
AY+ L L+ E + + L R +MP +V GL DT+
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP-GSALAIV-------GLAGYEDTL 134
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ R +S G+++R+++A L L LDEP + LD
Sbjct: 135 V-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN---------GHKTKLSFGTAAY 132
G LT ++G G GKS+LL A+ + + L G + + + + AY
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEATRSRNRYSVAY 83
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCAD------- 184
Q L+ TV E I++ + P++++R + + + LQ D
Sbjct: 84 AAQKPWLLNA-TVEENITFGS--------PFNKQRY---KAVTDACSLQPDIDLLPFGDQ 131
Query: 185 TVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT--LRCL 240
T IG RGI SGG+R+R+ +A + ++FLD+P S LD + + Q L+ L
Sbjct: 132 TEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 241 SRDGRTVIASIHQ 253
D RT++ H+
Sbjct: 189 QDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 36/220 (16%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD---- 137
+TA++GPSG GKST L ++ + L A + G + G V D
Sbjct: 67 VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN----------VYDADVDPV 116
Query: 138 ---NLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
IG + ++ + ++Y L++ ++R VE ++ L D
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYG--LKIQGYDGDIDER--VEESLRRAALWDEVKD 172
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ + L +SGG+++R+ IA I P ++ +DEP S LD A + + L+ +
Sbjct: 173 QLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-Y 230
Query: 246 TVIASIHQPSSEVFELFDRL-YLLSGGKTVYFGETSAAFE 284
TV+ H + + D+ L+GG+ V F +T FE
Sbjct: 231 TVVIVTHN-MQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
|
Length = 285 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 53/260 (20%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L K+L V E +L+GL G + A+MGP+GSGKSTL ++ A
Sbjct: 8 LEIKNLHASV----NEN-EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-I 61
Query: 112 LSGTILLNGHKTK-------------LSFG---TAAYVTQDDNLIGTLTVRETISYSARL 155
L G IL G L+F V+ D L ++Y+++
Sbjct: 62 LEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFL--------RLAYNSKR 113
Query: 156 R---LPDKMPW------SEKRTLV--ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204
+ LP+ P +EK LV + + + + + G SGGE++R
Sbjct: 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE------------GFSGGEKKRNE 161
Query: 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264
I L+ L LDE SGLD A + + + L ++I H + D
Sbjct: 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY 221
Query: 265 LYLLSGGKTVYFGETSAAFE 284
++++ GK + G+ A E
Sbjct: 222 VHVMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 47/203 (23%)
Query: 81 PGTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD 137
PG ++G +G+GKSTLL + A + I Y+ Q+
Sbjct: 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI------------KVGYLPQEP 77
Query: 138 NLIGTLTVRETISYSAR--LRLPDK-----MPWSEKRTLVERTIIEMG-LQDCADTVIGN 189
L T TVRE + D+ ++E ++ + E LQ+ D
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA-DA 136
Query: 190 WHLRG--------------------ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
W L +SGGERRRV++ +L +P +L LDEPT+ LD+ +
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
++ Q L+ TV+A H
Sbjct: 197 VAWLEQHLQ---EYPGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 23/181 (12%)
Query: 84 LTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGH--------KTKLSFGTAAYV 133
+TA++GPSG GKST + L+ L + +G IL +L V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR-TNVGMV 110
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWH 191
Q N ++ + ++Y ++ +K+TL E I+E L+ A D + H
Sbjct: 111 FQKPNPFPK-SIYDNVTYGPKIH-----GIKDKKTLDE--IVEKSLRGAAIWDELKDRLH 162
Query: 192 LR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
G+SGG+++R+ IA + + P ++ +DEPTS LD + V + ++ L +D +I
Sbjct: 163 DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222
Query: 250 S 250
+
Sbjct: 223 T 223
|
Length = 271 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 42/147 (28%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
+ G L+G SG GKSTL + L SG IL G
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLIL-GL--EEPTSGEILFEGKDIT--------------- 78
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
K+ E+R V + ++GL + +SGG+
Sbjct: 79 --------------------KLSKEERRERVLELLEKVGL----PEEFLYRYPHELSGGQ 114
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLD 226
R+R+ IA + + P+L+ DEP S LD
Sbjct: 115 RQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 50 ARLTWKDLTVMVTL--SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
L +++ TL G VL ++ G L GPSGSGKSTLL +L +
Sbjct: 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL 62
Query: 108 SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR-ETISY-SARLRLPDKMPWSE 165
+ G IL+ + TA L VR TI Y S LR+ ++ +
Sbjct: 63 PD---EGQILVRHEGEWVDLVTAEPRE-------VLEVRRTTIGYVSQFLRVIPRVSALD 112
Query: 166 --KRTLVERTIIEMGLQDCADTVIGN-------WHL--RGISGGERRRVSIALEILMRPR 214
L+ R + + A ++ W L SGGE++RV+IA ++
Sbjct: 113 VVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP 172
Query: 215 LLFLDEPTSGLDSA 228
+L LDEPT+ LD+
Sbjct: 173 ILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 37/250 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTKLSFGTAAYVTQ 135
G + AL+GPSGSGK+TLL ++ SG I +G H G +V Q
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVG---FVFQ 81
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV----IGNWH 191
L +TV + I++ + LP +R I+ + + V + + +
Sbjct: 82 HYALFRHMTVFDNIAFGLTV-LP-------RRERPNAAAIKAKVTQLLEMVQLAHLADRY 133
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV++A + + P++L LDEP LD+ + + LR L + + +
Sbjct: 134 PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV 193
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDF 311
E E+ DR+ ++S G QAG P R P+ F+ +
Sbjct: 194 THDQEEAMEVADRVVVMSQGN-------------IEQAGTPDQVWREPATRFVLEFMGEV 240
Query: 312 DKVKATLKGS 321
++++ T++G
Sbjct: 241 NRLQGTIRGG 250
|
Length = 353 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 50/214 (23%)
Query: 85 TALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAA--------- 131
TA+ G SG+GK++L++A+S L+ G I+LNG + F
Sbjct: 27 TAIFGRSGAGKTSLINAISG-------LTRPQKGRIVLNGR---VLFDAEKGICLPPEKR 76
Query: 132 ---YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
YV QD L VR + Y M ++ +V IE
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMA----KSMV-AQFDKIVALLGIE------------ 119
Query: 189 NWHL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
L +SGGE++RV+I +L P LL +DEP + LD + L L+R+
Sbjct: 120 --PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
I + E+ L DR+ +L GK FG
Sbjct: 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 33/190 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG------TILLNGHKTKLSFGTAAYV 133
G + L+GP+G GKST L L+ +L N IL ++L Y
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ----NYF 79
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEK---RTLVERTIIEMGLQDCADTVIGNW 190
T+ + + + + D +P + K L+++ E G D ++
Sbjct: 80 TK--------LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKD-ERGKLD---ELVDQL 127
Query: 191 HLRGI--------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
LR + SGGE +RV+IA + F DEP+S LD + +R L+
Sbjct: 128 ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 243 DGRTVIASIH 252
D V+ H
Sbjct: 188 DDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSS--------RLASNA-FLSGTILLNGHKTKLSFGTA 130
+T +GPSG GKST+L +L+ R + FL + G +
Sbjct: 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIG 188
V Q N ++++ + +++ RL K L +R ++ LQ A D V
Sbjct: 92 GMVFQQPNPF-SMSIFDNVAFGLRLN-------RYKGDLGDR--VKHALQGAALWDEVKD 141
Query: 189 NWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ G+S GG+++R+ IA I P +L LDEP S LD A V + + L +D
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD--Y 199
Query: 247 VIASIHQPSSEVFELFDRLYLLS-----GGKTVYFGETSAAFEFF 286
IA + + + D S G +T Y E + F
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
|
Length = 261 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
K L +T ++ ++ G A++G +GSGKSTL L+ + SG
Sbjct: 12 KTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SG 68
Query: 115 TILLNGHKTKLSFGTAAY-------VTQDDNLIGTLTVRETIS--YSARLRLPDKMPWSE 165
IL+N H L FG ++ + QD N +L R I LRL + +
Sbjct: 69 EILINDHP--LHFGDYSFRSKRIRMIFQDPN--TSLNPRLRIGQILDFPLRLNTDLEPEQ 124
Query: 166 KRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
+R + T+ +GL D A N++ ++ G+++RV++A +++RP+++ DE +
Sbjct: 125 RRKQIFETLRMVGLLPDHA-----NYYPHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 225 LDSA 228
LD +
Sbjct: 180 LDMS 183
|
Length = 267 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
++T KDLT T + VLE ++ PG L+G +GSGKSTLL A L +
Sbjct: 2 QMTVKDLTAKYTEGG---NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 57
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI-SYSARLRLPDKMPWSEKRTL 169
G I ++G +S+ + + + G + + I S + R L WS++
Sbjct: 58 ---GDIQIDG----VSWNSVP-LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISG------GERRRVSIALEILMRPRLLFLDEPTS 223
+ E+GL+ + G + G G ++ + +A +L + ++L LDEP++
Sbjct: 110 --KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 167
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
LD + +TL+ + TVI S H+
Sbjct: 168 HLDPITYQVIRKTLK-QAFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 25/224 (11%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKT 123
L+ ++ G ++G +G+GKSTLL +L + + SG + + G
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLL-----KLIAGIYKPTSGKVKVTG--- 88
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDC 182
K++ LT RE I + + EK IIE L D
Sbjct: 89 KVAPLIELGA----GFDPELTGRENIYLRGLILGLTRKEIDEK----VDEIIEFAELGDF 140
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D ++ S G R++ ++ + P +L LDE + D+A + L L
Sbjct: 141 IDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
+T++ H + + DR L G+ G +
Sbjct: 196 KNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238
|
Length = 249 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTL---LDALSSRLASNAFLSGTIL--LNGHKT 123
VL ++ + G AL+G SG GKSTL L L S N G L LN +
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQD 181
K V QD I + R+T+ R LR + +E+ + + L D
Sbjct: 85 KAFRRDIQMVFQDS--ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142
Query: 182 -CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
D +SGG+ +RV +A + + P+LL LDE S LD
Sbjct: 143 SVLDKRPPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTAAYVTQDDNL 139
PG +L+G SGSGKST AL + S G I+ NG + LS G + +D
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRIDTLSPGKLQALRRDIQF 405
Query: 140 I-----GTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW- 190
I +L R+T+ S LR+ +P V + +GL + A W
Sbjct: 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA------WR 459
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ SGG+R+R+ IA + + P+++ DE S LD + + L L RD
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
I + V + R+ ++ G+ V G A FE
Sbjct: 520 ISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK-TKLSFGT--AAYVT 134
GT+ L+GPSG GK+T+L RL A L G I ++G T S V
Sbjct: 32 GTMVTLLGPSGCGKTTVL-----RLV--AGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
Q L +++ E + Y ++ +P E++ V+ + + L D +
Sbjct: 85 QSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQ----- 136
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
ISGG+++RV++A ++++P++L DEP S LD+
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 30/221 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHK-TKLSFG--TAA--- 131
G + ++G SG+GKSTL+ R + SG +L++G T LS A
Sbjct: 29 PAGEIFGVIGASGAGKSTLI-----RCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83
Query: 132 --YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ Q NL+ + TV + ++ L P +E + V + +GL D AD
Sbjct: 84 IGMIFQHFNLLSSRTVFDNVALPLEL---AGTPKAEIKARVTELLELVGLSDKADRYPAQ 140
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+SGG+++RV+IA + P++L DE TS LD A + + L+ ++R+ G T++
Sbjct: 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIV 195
Query: 249 ASIHQPSSEVF-ELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
H+ +V + DR+ ++ G+ V E E F+
Sbjct: 196 LITHE--MDVVKRICDRVAVIDAGRLV---EQGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 251
R +SGGE++RV +A ++ P L DEPT LD A V L + G +++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 252 HQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
H P EV E L D+ L G+ G F +
Sbjct: 227 HWP--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME 262
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
++ + LT T G VL+ L+ E G L+G +GSGKSTLL AL RL S
Sbjct: 1217 QMDVQGLTAKYT-EAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-LRLLST- 1271
Query: 111 FLSGTILLNG--------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
G I ++G + +FG V I + T R+ + + D+
Sbjct: 1272 --EGEIQIDGVSWNSVTLQTWRKAFG----VIPQKVFIFSGTFRKNLDPYEQWS--DEEI 1323
Query: 163 WSEKRTLVERTIIEMGLQDCADTVI--GNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220
W + +++IE D D V+ G + L S G ++ + +A IL + ++L LDE
Sbjct: 1324 WKVAEEVGLKSVIEQ-FPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAKILLLDE 1379
Query: 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
P++ LD + +TL+ + TVI S H+
Sbjct: 1380 PSAHLDPVTLQIIRKTLKQSFSNC-TVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 46/207 (22%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG+ L+G +G+GKSTL+ L+ LA +SG I L KL Y Q
Sbjct: 337 PGSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEIGL-AKGIKL-----GYFAQ----- 382
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG------ 194
+ + LR D+ P L + + E L+D +G + +G
Sbjct: 383 ------HQLEF---LR-ADESPLQHLARLAPQEL-EQKLRD----YLGGFGFQGDKVTEE 427
Query: 195 ---ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS- 250
SGGE+ R+ +AL + RP LL LDEPT+ LD +T+ L + +G V+ S
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVSH 485
Query: 251 -IHQPSSEVFELFDRLYLLSGGKTVYF 276
H S D LYL+ GK F
Sbjct: 486 DRHLLRSTT----DDLYLVHDGKVEPF 508
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 32/209 (15%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVTQ 135
G + + G G+G++ L+ AL A G + +NG + A V +
Sbjct: 286 GEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPE 343
Query: 136 D---DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
D ++ L V + I+ S KM I + I +
Sbjct: 344 DRKRHGIVPILGVGKNITLSVLKSFCFKM-----------RIDAAAELQIIGSAIQRLKV 392
Query: 193 R---------GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ +SGG +++ +A +L PR+L LDEPT G+D A + + + + L+++
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G +I + +EV L DR+ ++ GK
Sbjct: 453 GVAIIV-VSSELAEVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
T+TA +GPSG GKST L L+ + ++G I L+G + V +
Sbjct: 45 KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI---YDPRLDVVELRAR 101
Query: 140 IGTL---------TVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+G + ++ E ++Y R+ K +E +VE ++ + GL + V
Sbjct: 102 VGMVFQKPNPFPKSIYENVAYGPRIHGLARSK---AELDEIVETSLRKAGLWE---EVKD 155
Query: 189 NWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
H G +SGG+++R+ IA I + P ++ +DEP S LD A V + + L R T
Sbjct: 156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYT 214
Query: 247 VIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ H Q ++ V + R G V G+T F
Sbjct: 215 IVIVTHSMQQAARVSQ---RTAFFHLGNLVEVGDTEKMF 250
|
Length = 267 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 61/265 (23%)
Query: 61 VTLSN-----GETH---NV-LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASN 109
VTL N G+ ++ L+ G +GPSG GKSTLL ++ + S
Sbjct: 4 VTLRNVTKAYGDVVISKDINLD-----IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58
Query: 110 AFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
G +N + G V Q L L+V E +S+ +L K E
Sbjct: 59 DLFIGEKRMNDVPPAERGVGM---VFQSYALYPHLSVAENMSFGLKLAGAKK---EEINQ 112
Query: 169 LVERT--IIEMGLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLFLDEP 221
V + ++++ HL + +SGG+R+RV+I ++ P + LDEP
Sbjct: 113 RVNQVAEVLQLA------------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 222 TSGLDSAAAFFV---TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
S LD AA V + R R GRT+I H E L D++ +L G
Sbjct: 161 LSNLD--AALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG------- 210
Query: 279 TSAAFEFFAQAGFPCPALRNPSDHF 303
AQ G P P++ F
Sbjct: 211 ------RVAQVGKPLELYHYPANRF 229
|
Length = 369 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG +++V I +L +P +L LDEPT G+D A F + Q + L++ + +I
Sbjct: 388 QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447
Query: 251 IHQPSSEVFELF---DRLYLLSGGKTVYFGETS 280
SSE+ EL DR+ ++S G +T
Sbjct: 448 ----SSEMPELLGITDRILVMSNGLVAGIVDTK 476
|
Length = 491 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L D +T++G+ + +SGG+++R+SIA I+ P++L LDE TS LD+ + + V +T+
Sbjct: 565 LPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 239 CLS-RDGRTVIASIHQPSS 256
L + R I H+ S+
Sbjct: 624 NLKGNENRITIIIAHRLST 642
|
Length = 1466 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-07
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 80/195 (41%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL------LNGHKTKLSFG-TAAYV 133
PG ++G +G+GKSTLL I+ G + + + G Y+
Sbjct: 32 PGAKIGVLGLNGAGKSTLL---------------RIMAGVDKEFEG-EARPAPGIKVGYL 75
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-----------------TIIE 176
Q+ L TVRE + + +E + ++R E
Sbjct: 76 PQEPQLDPEKTVRENV----------EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAE 125
Query: 177 MG-LQD----------------------C--ADTVIGNWHLRGISGGERRRVSIALEILM 211
G LQ+ C D + +SGGERRRV++ +L
Sbjct: 126 QGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK-----LSGGERRRVALCRLLLE 180
Query: 212 RPRLLFLDEPTSGLD 226
+P +L LDEPT+ LD
Sbjct: 181 KPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 15/211 (7%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF---- 127
L+G+ PG L G +G+GKSTL+ LS + G I +G K S
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW-DGEIYWSGSPLKASNIRDT 75
Query: 128 --GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCAD 184
+ Q+ L+ L+V E I + LP +M ++ + + E+ L
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 185 T-VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
T +G++ GG+++ V IA + + RLL LDEP+S L + +R L
Sbjct: 136 TRPVGDY-----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
G + H+ +EV + D + ++ G+ V
Sbjct: 191 GVACVYISHK-LNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 44/217 (20%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ ++ + G ++G +G+GKSTL+ AL L + G I ++G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDG---------- 69
Query: 131 AYVTQDDNLIGTLTVRETI----------SYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
D + I +R ++ S + R L +S++ + E GL
Sbjct: 70 ----IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLN 125
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+S G+R+ + +A +L RPR+L LDE T+ +D A + +T+R
Sbjct: 126 --------------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ T++ H+ + + +D++ ++ G+ +
Sbjct: 172 FTNS-TILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 33/157 (21%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G+L A++G +G GK++L+ A+ L + ++++ GT AYV Q +
Sbjct: 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRS--DASVVIR--------GTVAYVPQ-VSW 689
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHL 192
I TVR+ I + + P+ +R ER I LQ D T IG
Sbjct: 690 IFNATVRDNILFGS--------PFDPER--YERAIDVTALQHDLDLLPGGDLTEIGE--- 736
Query: 193 RG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
RG ISGG+++RVS+A + + D+P S LD+
Sbjct: 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
Length = 1622 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----------HK 122
GL+ G L + GP+G+GK++LL L+ LA +G +L G H+
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAG-LARPD--AGEVLWQGEPIRRQRDEYHQ 74
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE----MG 178
L G + + LT E + + RL + + E +G
Sbjct: 75 DLLYLGHQPGIKTE------LTALENLRFYQRLH----------GPGDDEALWEALAQVG 118
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L D + L S G++RRV++A L R L LDEP + +D + L
Sbjct: 119 LAGFEDVPVR--QL---SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 239 CLSRDGRTVIASIHQP 254
+ G VI + HQ
Sbjct: 174 QHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKT------KLSFGTAA 131
+ +L+GP+G+GK+T+ + L+ F GTILL G +++
Sbjct: 30 EQEIVSLIGPNGAGKTTVFNCLT------GFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPD-------KMP---WSEKRTLVERTII---EMG 178
Q L +TV E + + +L K P +E L +R +G
Sbjct: 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL-DRAATWLERVG 142
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L + A+ GN ++ G++RR+ IA ++ +P +L LDEP +GL+ + + +
Sbjct: 143 LLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L + + I V + DR+Y+++ G
Sbjct: 198 ELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
Length = 255 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 21/158 (13%)
Query: 82 GTLTALMGPSGSGKS-TLLDALSSRLASNAFLSGTILLNG---HKTKLSFGTAAYVTQDD 137
G + AL+G SGSGKS T AL A +G +LL+G L A + Q+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 138 ----NLIGTLT--VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
N + T+ RET + + + +GL++ A V+ +
Sbjct: 89 RSAFNPLHTMHTHARETCLALGKPADDATLT---------AALEAVGLEN-AARVLKLYP 138
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+SGG +R+ IAL +L + DEPT+ LD A
Sbjct: 139 FE-MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175
|
Length = 254 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 40/225 (17%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTIL----------LNGHKTKLSFGTAA 131
+ A +GPSG GKSTLL + + L A + G +L +N K + G
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM-- 105
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGN 189
V Q N ++ E I+++ R K L E ++E L+ A + V
Sbjct: 106 -VFQRPNPFPK-SIYENIAFAPRAN-------GYKGNLDE--LVEDSLRRAAIWEEVKDK 154
Query: 190 WHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT 246
+G +SGG+++R+ IA I M+P +L +DEP S LD + V + CL ++ T
Sbjct: 155 LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL--CLELKEQYT 212
Query: 247 VIASIH--QPSSEVFE---LFDRLYLLSG---GKTVYFGETSAAF 283
+I H Q +S V + F+ G GK V F T F
Sbjct: 213 IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257
|
Length = 274 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 32/250 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL------SSR 105
L ++LT+ S G ++ ++ G + L+G SGSGKS + A+ + R
Sbjct: 4 LDIRNLTIEFKTSQGWV-KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62
Query: 106 LASNAFLSGTI-LLN----------GHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154
+ ++ I LL GH + F +G ++ +++ +
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYK 122
Query: 155 LRLPDKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
R + W ++R L+ R +G++D D I + ++ GE ++V IA+ + +
Sbjct: 123 GRWWQRFGWRKRRAIELLHR----VGIKDHKD--IMRSYPYELTEGECQKVMIAIALANQ 176
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQPSSEVFELFDRLYLLS 269
PRLL DEPT+ ++ Q R LSR + T I I + + D++ +L
Sbjct: 177 PRLLIADEPTNSMEPTTQ---AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233
Query: 270 GGKTVYFGET 279
G+TV +
Sbjct: 234 CGQTVESAPS 243
|
Length = 330 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF------GTAAYVTQ 135
G + G GSG++ L++ L + G I LNG AY+T+
Sbjct: 289 GEILGFAGLVGSGRTELMNCL---FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 136 ---DDNLIGTLTVRETISYSARLRLPD-KMPW-----SEKRTLVERTIIEMGLQDCADTV 186
D+ ++ + ++ S L+ K +++ E + L+ C
Sbjct: 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-CHSV- 403
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
N ++ +SGG +++V I+ + P ++ DEPT G+D A + + +R L+ DG+
Sbjct: 404 --NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKV 461
Query: 247 VIASIHQPSSEVFELF---DRLYLLSGGK 272
++ SSE+ E+ DR+ + G+
Sbjct: 462 ILMV----SSELPEIITVCDRIAVFCEGR 486
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 47/190 (24%)
Query: 63 LSNGETHNVL-EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121
LS G +L + L+ PG + ++GP+G+GKSTL ++ + + SGTI + G
Sbjct: 328 LSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKI-GE 383
Query: 122 KTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KL AYV Q D L TV E IS II++G +
Sbjct: 384 TVKL-----AYVDQSRDALDPNKTVWEEISGGL-------------------DIIQLGKR 419
Query: 181 DC-ADTVIGNWHLRG---------ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ + +G ++ +G +SGGER RV +A + +L LDEPT+ LD
Sbjct: 420 EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD---- 475
Query: 231 FFVTQTLRCL 240
+TLR L
Sbjct: 476 ---VETLRAL 482
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------- 132
E G+ AL+G +GSGKSTL+ ++ L + SGTI + G+ G
Sbjct: 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKV 87
Query: 133 --VTQ-DDNLIGTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVI 187
V Q + + TV + + + P +SE + + + ++GL +
Sbjct: 88 SLVFQFPEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGL----SEDL 138
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
+ +SGG+ RRV+IA + P +L LDEP +GLD + Q + + G TV
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTV 198
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTV 274
I H +V E D + +L GK +
Sbjct: 199 ILVTHN-MDDVAEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-------LSFGTAAYVTQD--- 136
LMG +G++ L+ L L SG + L+GH+ L+ G Y+++D
Sbjct: 286 LMG---AGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIV-YISEDRKR 338
Query: 137 DNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192
D L+ ++V+E +S +A ++++ V I ++ + IG
Sbjct: 339 DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL--- 395
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI-ASI 251
+SGG +++V+IA ++ RP++L LDEPT G+D A + Q + +G ++I S
Sbjct: 396 --LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSS 453
Query: 252 HQPSSEVFELFDRLYLLSGGK 272
P EV + DR+ ++ G+
Sbjct: 454 EMP--EVLGMSDRILVMHEGR 472
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVT 134
PG + AL+G +G+GKST++ L+ +A G+IL G + + ++ +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKSSQEAGIGIIH 85
Query: 135 QDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q+ NLI LT+ E I ++ W + ++ + + L+ +D ++G
Sbjct: 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE---- 141
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL---DSAAAFFVTQTLRCLSRDGRTVIAS 250
+S GE++ V IA + +++ +DEPT L ++ + F V + L+ R I
Sbjct: 142 -LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG----IVY 196
Query: 251 IHQPSSEVFELFDRLYLLSGGK 272
I E+FE+ D + + G+
Sbjct: 197 ISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 39/189 (20%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN---------------AFLSGTILLNGHKTK 124
PG + ++GP+G GKST L L+ L N F GT L N + K
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRF-RGTELQN-YFKK 155
Query: 125 LSFGT--AAYVTQDDNLIGTL---TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
L G A + Q +LI + V E L+ D+ R + + +GL
Sbjct: 156 LYEGELRAVHKPQYVDLIPKVVKGKVGEL------LKKVDE------RGKFDEVVERLGL 203
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
++ D + +SGGE +RV+IA +L + F DEP+S LD + +R
Sbjct: 204 ENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 240 LSRDGRTVI 248
L+ DG+ VI
Sbjct: 259 LAEDGKYVI 267
|
Length = 591 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 57/236 (24%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNG----HKTKLSFGTAAY 132
E G A++G +GSGKSTL+ + NA L +GT+ ++ HKTK Y
Sbjct: 31 EQGKYYAIVGQTGSGKSTLIQNI------NALLKPTTGTVTVDDITITHKTK-----DKY 79
Query: 133 VTQDDNLIGTL-----------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
+ IG + TV I + + KM E + R ++++G
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK---NFKMNLDEVKNYAHRLLMDLGFS- 135
Query: 182 CADTVIGNWHLRGI--------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
R + SGG+ R+++I + M P ++ LDEPT+GLD + V
Sbjct: 136 -----------RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184
Query: 234 TQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+ L+ L + +T+I H +EV D + ++ G V ++ E F
Sbjct: 185 MRLLKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIV---SQTSPKELFKD 236
|
Length = 286 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 15/223 (6%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLS 126
N L G++ G +++G +GSGKST L+D L + G +L + L
Sbjct: 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
DN TV + +++ +P E V+ ++ + + D
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDFKTRE 137
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+SGG+++RV++A I +RP ++ LDE TS LD + + + + +
Sbjct: 138 PAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ SI E DR+ ++ G+ + + +A E FA +
Sbjct: 193 TVLSITHDLDEAAS-SDRILVMKAGEII---KEAAPSELFATS 231
|
Length = 277 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L+ ++ G + +L G +G+GKSTL+ LS + G I+ G +L
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY-EGEIIFEG--EELQASNIR 77
Query: 131 -------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A + Q+ L+ L+V E I + M + ++ + ++ L
Sbjct: 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP 137
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
T +GN + G+++ V IA + + RLL LDEPT+ L + + +R L
Sbjct: 138 ATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
G I H+ +EV + D + ++ G+ +
Sbjct: 193 GIACIYISHK-LNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L G+T G L A++G G GKS+LL AL LA + G + + G+ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVHMK--------GSVA 702
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
YV Q I ++RE I + L E L+ +E+ L T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD--LEI-LPSGDRTEIGE-- 756
Query: 192 LRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+G+ SGG+++RVS+A + + D+P S +D+
Sbjct: 757 -KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255
SGG+R+RV IA+ + P LL DEPT+ LD + L+ L + I I
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218
Query: 256 SEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V + DR+Y++ G+ V G T F
Sbjct: 219 GIVRKFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG++RRV++A I M L LDEPT GLD F+ R + +I H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+V + D + ++ GK + G + FE F+
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIG---SPFEIFS 240
|
Length = 289 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+TA +GPSG GKST+L + + L + G + +G V + IG
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRR---IG 94
Query: 142 TL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
+ ++ + I+Y AR+ K E LVER++ + L D + L
Sbjct: 95 MVFQKPNPFPKSIYDNIAYGARI-NGYKGDMDE---LVERSLRQAALWDEVKDKLKQSGL 150
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS-- 250
+SGG+++R+ IA I ++P ++ +DEP S LD + + + + L +I +
Sbjct: 151 -SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
Query: 251 IHQPS--SEVFELFDRLYLLSGGKTVYFGE 278
+ Q + S++ F+ GG+ Y E
Sbjct: 210 MQQAARVSDMTAFFNVELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGGE +RV+IA +L DEP++ LD + +R LS +G+ +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP--ALRNPSDHFLRCINSDF 311
+ + L DR+++ G VY G R + FLR F
Sbjct: 132 LAVLDYLSDRIHVFEGEPGVY--------------GIASQPKGTREGINRFLRGYLITF 176
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG+ RRV+IA + M P +L LDEPT+GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILL---NGHKTKLSFGTA------ 130
G A++G SGSGKS AL L A +LL + +LS +A
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101
Query: 131 -----AYVTQD--DNLIGTLTVRETISYSARLRL---PDKMPWSEKRTLVERTIIEMGLQ 180
A + Q+ +L TV E I+ S RL ++ KR L + I E
Sbjct: 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE---- 157
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
A T++ + + +SGG R+RV IA+ + RP +L DEPT+ LD + Q ++ L
Sbjct: 158 --AQTILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ + I V E+ DR+ ++ G+ V G F
Sbjct: 215 QKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
|
Length = 623 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------KTKLSFGTAAYVTQ 135
G T+++G +GSGKST+ + SG I N KL
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQN 91
Query: 136 DDNLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
DN V + Y L + P+ E V + ++ + + AD +
Sbjct: 92 PDNQF----VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----YEPNA 142
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG+++RV+IA + + P ++ LDE TS LD A + +R + + I SI
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 255 SSEVFELFDRLYLLSGGKTVY 275
SE E D + +++ G TVY
Sbjct: 203 LSEAMEA-DHVIVMNKG-TVY 221
|
Length = 269 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
R +SGG +++V IA + P+LL +DEPT G+D +A + Q +R ++ V+ I
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF-IS 460
Query: 253 QPSSEVFELFDRLYLLSGGK 272
E+ ++ DR+ ++ G+
Sbjct: 461 SDLEEIEQMADRVLVMHQGE 480
|
Length = 510 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
SGGE+ R+++A +L P LL LDEPT+ LD
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-R 242
DT +G + + +SGG+++R++IA +L P++L LDE TS LDS + + +T+ + +
Sbjct: 1349 DTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407
Query: 243 DGRTVIASIHQPSS 256
+T+I H+ +S
Sbjct: 1408 ADKTIITIAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHK-TKLSFGTAAYVTQD 136
E G A++G SG GKSTL +RL + G + G K + Q
Sbjct: 39 ERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 137 -----DNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIG 188
N G+L R+ + L + + +E+R + ++GL+ + D
Sbjct: 94 IQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP- 152
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
H+ SGG+R+R++IA +++ P ++ DEP S LD
Sbjct: 153 --HM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G LT ++G +GSGKSTLL +L S+ + G + + S AYV Q I
Sbjct: 686 GKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVW-----AERSI---AYVPQQ-AWIM 733
Query: 142 TLTVRETISY-----SARLRLPDKMPWSEKRTLVERTIIEMGLQDCA---DTVIGNWHLR 193
TVR I + +ARL V + +E L +T IG +
Sbjct: 734 NATVRGNILFFDEEDAARLA-----------DAVRVSQLEADLAQLGGGLETEIGE---K 779
Query: 194 GI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
G+ SGG++ RVS+A + + LD+P S LD+ V + + G+T + +
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLAT 839
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
HQ V D + L G+ + G SA F
Sbjct: 840 HQ--VHVVPRADYVVALGDGRVEFSGS-SADF 868
|
Length = 1560 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
LE G G + ++GP+G GK+T + L+ + + G+ K+S+
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGSEE----DLKVSY-KPQ 408
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Y++ D + TV + + + R +E +V+ + L+D +
Sbjct: 409 YISPDYD----GTVEDLLRSAIRSAFGSSYFKTE---IVKP----LNLEDLLER-----P 452
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
+ +SGGE +RV+IA + L LDEP++ LD V + +R
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 40/174 (22%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK-T 123
V++G+ G L+GPSG GKSTLL R+ A L SG I + G
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-----RMV--AGLERITSGEIWIGGRVVN 69
Query: 124 KLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT--IIEM 177
+L A A V Q+ L ++VRE ++Y ++R MP +E V I+E+
Sbjct: 70 ELE--PADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILEL 124
Query: 178 GLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L R +SGG+R+RV++ I+ P + DEP S LD
Sbjct: 125 E------------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 57/161 (35%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTAAYVTQ--------- 135
AL+GP+G GK+TLL + +L ++ SG I H TKL AY Q
Sbjct: 349 ALIGPNGCGKTTLLKLMLGQLQAD---SGRI----HCGTKLE---VAYFDQHRAELDPEK 398
Query: 136 --DDNLI-GTLTV------RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
DNL G V R + Y L D + + KR T +
Sbjct: 399 TVMDNLAEGKQEVMVNGRPRHVLGY-----LQDFL-FHPKRA---MTPV----------- 438
Query: 187 IGNWHLRGISGGERRRVSIALEILMRP-RLLFLDEPTSGLD 226
+ +SGGER R+ +A + ++P LL LDEPT+ LD
Sbjct: 439 ------KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105
L+ KDL V V E +L GL PG + A+MGP+GSGKSTL L+ R
Sbjct: 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G+L A++G +G GK++L+ A+ L+ S I G+ AYV Q + I
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----------GSVAYVPQV-SWIF 691
Query: 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRG 194
TVRE I + + ++ W R I LQ D T IG RG
Sbjct: 692 NATVRENILFGSDFE-SERY-W--------RAIDVTALQHDLDLLPGRDLTEIGE---RG 738
Query: 195 --ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
ISGG+++RVS+A + + D+P S LD+ A V + G+T + +
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
Query: 253 QPSSEVFELFDRLYLLSGG 271
Q L DR+ L+S G
Sbjct: 799 Q--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 191 HLRGISGGERRRVSIAL-----EILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
++ +SGGER S+AL ++L R LLFLDEP LD + + L L
Sbjct: 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS 871
Query: 243 DGRTVI 248
DGR +I
Sbjct: 872 DGRQII 877
|
Length = 908 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQ 253
+S GER RV++A ++ PR++ LDEPT +D VT + L+ +T I H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGET 279
V ++ DR L+ GK V G+
Sbjct: 488 -MDFVLDVCDRAALMRDGKIVKIGDP 512
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASN 109
G L A++GPSG+GK TLLDA +RLA
Sbjct: 4 MGRLIAVVGPSGAGKDTLLDAARARLAGR 32
|
Length = 192 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG +RV IA+ I RP+LL DEPT+ LD + + L L + + I
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
+ V E ++ ++ G+ V ET A + F
Sbjct: 214 LALVAEAAHKIIVMYAGQVV---ETGKAHDIF 242
|
Length = 326 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 59 VMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL 102
V V + L+ L + G AL+G SG GKSTL++AL
Sbjct: 172 VPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNAL 215
|
Length = 356 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSS------RLASNAFLSGTI-LLN----------GHKTK 124
G + L+G SGSGKS + A+ R+ ++ I LL GH
Sbjct: 33 GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT--LVERTIIEMGLQDC 182
+ F +G ++ ++ + R + W ++R L+ R +G++D
Sbjct: 93 MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHR----VGIKDH 148
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D + ++ ++ GE ++V IA+ + +PRLL DEPT+ ++ Q R L+R
Sbjct: 149 KD-AMRSFPYE-LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ---AQIFRLLTR 203
Query: 243 ---DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ T I I + + D++ +L G+TV
Sbjct: 204 LNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
Length = 330 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 192 LRGISGGERRRVSIA---LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
++GIS G +R +++ L L + LL +DEP +GL + + L+ LS G +I
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLI 246
Query: 249 ASIHQPS 255
+ H P
Sbjct: 247 FTTHSPL 253
|
Length = 256 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-04
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 46/171 (26%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD-DNL 139
PG + ++GP+G+GKSTL ++ + + SGTI + G KL AYV Q D L
Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKI-GETVKL-----AYVDQSRDAL 399
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRG---- 194
TV E IS D II++G ++ + +G ++ +G
Sbjct: 400 DPNKTVWEEISGGL-----D--------------IIKVGNREIPSRAYVGRFNFKGGDQQ 440
Query: 195 -----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+SGGER R+ +A + +L LDEPT+ LD +TLR L
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD-------VETLRAL 484
|
Length = 556 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 85 TALMGPSGSGKSTLLDALS 103
T L GPSGSGKSTL+DA+
Sbjct: 24 TLLTGPSGSGKSTLIDAIQ 42
|
Length = 60 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 194 GISGGERRRVSIAL-----EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+SGGE+ ++AL + RP L LDE GLD + + + G VI
Sbjct: 77 QLSGGEKELSALALILALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 249 ASIHQPSSEVFELFDRLY 266
H P E+ EL D+L
Sbjct: 136 VITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVT 134
P ++ ALMG +G+GKSTLL L + SG+IL G + A V
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVH 79
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII---EMGLQ-DCADTVIGNW 190
Q+ NL+ +V + + R P K + ++ + T E+ + D V
Sbjct: 80 QELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA--- 133
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+S + + + IA +++ +DEPTS L + +R L G ++
Sbjct: 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 251 IHQPSSEVFELFDRLYLLSGGKTV 274
H+ E+F+L D + +L G+ +
Sbjct: 191 SHK-MEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 79 AEPGTLT-----ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133
E G+++ ++GP+G GK+T + ++ L+G + + ++ T +Y
Sbjct: 17 VEGGSISESEVIGILGPNGIGKTTFI-----KM-----LAGVLKPDEGDIEIELDTVSYK 66
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q TVR+ +S D +T + + ++ D +
Sbjct: 67 PQYIKADYEGTVRDLLSS----ITKDFYTHPYFKTEI---AKPLQIEQILDR-----EVP 114
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
+SGGE +RV+IA + + LDEP++ LD ++ +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----------HKTKLSFGTAA 131
G + ++G +G GKSTL G ILL+G ++ S A
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFAD 424
Query: 132 YVTQDDNLIGTL-----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+ DD LIG ++ Y RL + DK+ I + G
Sbjct: 425 FHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKV-----------KIEDGGFSTTTA-- 470
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGR 245
+S G+++R+++ L +L DE + D A FF + L L R G+
Sbjct: 471 --------LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTV 274
T+I H + FEL D++ L+ G V
Sbjct: 523 TIIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 55/206 (26%)
Query: 71 VLEGLTGYAEPGT----------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
L+ + E L + GP+G+GKST+LDA++ L
Sbjct: 7 ELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-------------- 52
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+G + +V +A + ++ K+ VER+ +
Sbjct: 53 ------YGK---TPRYGRQENLRSVFAPGEDTAEVSFTFQL--GGKKYRVERS-RGLDYD 100
Query: 181 DCADTVI---GNW------HLRGISGGERRRVSIALEILM----------RPRLLFLDEP 221
V+ G + + +SGGE S++L + + R LF+DE
Sbjct: 101 QFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEG 160
Query: 222 TSGLDSAAAFFVTQTLRCLSRDGRTV 247
LD A V L + + R V
Sbjct: 161 FGTLDPEALEAVATALELIRTENRMV 186
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 89 GPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAAYVTQDDNLI------- 140
G SG GKST A+ + + G + G + V D +I
Sbjct: 54 GESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110
Query: 141 --GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198
+T+ E I+ R P K+ E + V+ ++++GL +I N + SGG
Sbjct: 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGL---LPNLI-NRYPHEFSGG 165
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258
+ +R+ IA +++ P+L+ DEP S LD + V L+ L R+ + I + V
Sbjct: 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV 225
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFE 284
+ DR+ ++ G V G +
Sbjct: 226 KHISDRVLVMYLGHAVELGTYDEVYH 251
|
Length = 331 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------HKTKLSFGTAAYVT---- 134
A +G +GSGKS L AL+ L LL+G H T+LSF +
Sbjct: 33 AFVGANGSGKSALARALAGEL---------PLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 135 QDDN--LIGT------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Q +N ++ T E I + E+ + G+ D
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDR- 131
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S GE R+ + ++ P LL LDEP GLD A+ + + L L + G T
Sbjct: 132 ----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187
Query: 247 VI 248
++
Sbjct: 188 LV 189
|
Length = 490 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + + + VL+ + AL+G +GSGKSTL L + G I L+G
Sbjct: 346 VSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLL---MGYYPLTEGEIRLDG 402
Query: 121 HK-TKLSFGT----AAYVTQD-----DNLIGTLTVRETISYSARLRLPDKMPWSE-KRTL 169
+ LS A V QD D + +T+ IS + + + +E R+L
Sbjct: 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSL 462
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+ +G Q GN +S G+++ +++A ++ P++L LDE T+ +DS
Sbjct: 463 PDGLYTPLGEQ-------GN----NLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ Q L R+ T++ H+ S+ V D + +L G+ V
Sbjct: 512 EQAIQQALA-AVREHTTLVVIAHRLSTIVEA--DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+ + DLT L + LE G G + ++GP+G GK+T L+ L +
Sbjct: 341 VEYPDLTK--KLGDFS----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-- 392
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G + + K+S+ Y+ D + TV + + S L SE +++
Sbjct: 393 -EGEVDP---ELKISY-KPQYIKPDYDG----TVEDLLR-SITDDLGSSYYKSE---IIK 439
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L+ D +++ +SGGE +RV+IA + L LDEP++ LD
Sbjct: 440 P----LQLERLLDK-----NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490
Query: 232 FVTQTLR 238
V + +R
Sbjct: 491 AVAKAIR 497
|
Length = 590 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106
+D+ V + + + LE L T L+G SG GKSTL++AL L
Sbjct: 138 EDIGYPVLFVSAKNGDGLEELAELLAGKI-TVLLGQSGVGKSTLINALLPEL 188
|
Length = 301 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 113 SGTILLNGHKTKLS-------FGTAAYVTQD---DNLIGTLTVRETISYSARLRLPDKMP 162
G I ++G K+ G A V +D D ++ + V + I+ +A
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAAL-------- 367
Query: 163 WSEKRTLVERTIIEMGL-QDCADTVIGNWHLR---------GISGGERRRVSIALEILMR 212
+ I+ I ++ +SGG +++ +A +L+
Sbjct: 368 ----DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P++L LDEPT G+D A + + + + L + G +I I EV L DR+ ++ GK
Sbjct: 424 PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV-ISSELPEVLGLSDRVLVMHEGK 482
|
Length = 506 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN---------------AFLSGTILLNGHKTK 124
+ G +T ++GP+G GK+T + LS L N F GT L N + K
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF-RGTELQN-YFKK 154
Query: 125 LSFG--TAAYVTQDDNLI-----GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
L G + Q +LI G VRE L+ D+ R ++ + +
Sbjct: 155 LYNGEIKVVHKPQYVDLIPKVFKGK--VREL------LKKVDE------RGKLDEVVERL 200
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
GL++ D I +SGGE +RV+IA +L F DEPTS LD V + +
Sbjct: 201 GLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 238 RCLSRDGRTVI 248
R L+ G+ V+
Sbjct: 256 RELAE-GKYVL 265
|
Length = 590 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLA 107
G L ++GPSG+GK TLLD +RLA
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLA 26
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-------AYVT 134
G L L+G +GSGKSTL L+ SG ILL+G +S + V
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDG--KPVSAEQLEDYRKLFSAVF 403
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
D +L L E A +L +K W ++ L +T L D G +
Sbjct: 404 SDYHLFDQLLGPEG---KASPQLIEK--WLQRLELAHKT----SLND------GRFSNLK 448
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGRTVIASIHQ 253
+S G+++R+++ L +L +L LDE + D A F L L G+T+ A H
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH- 507
Query: 254 PSSEVFELFDRLYLLSGGKTV 274
F DRL + G+
Sbjct: 508 -DDHYFIHADRLLEMRNGQLS 527
|
Length = 546 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT- 129
VL+ ++ E G L A+ G +GSGKS+LL + L + G I H ++SF
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKI---KHSGRISFSPQ 494
Query: 130 AAYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+++ T DN+I L+ E Y++ + K +E I +D TV
Sbjct: 495 TSWIMPGTIKDNIIFGLSYDE-YRYTSVI----------KACQLEEDIALFPEKD--KTV 541
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDG 244
+G + +SGG+R R+S+A + L LD P + LD + F + + +S
Sbjct: 542 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
R ++ S E + D++ LL G ++G S
Sbjct: 601 RILVTS----KLEHLKKADKILLLHEGVCYFYGTFS 632
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.002
Identities = 38/181 (20%), Positives = 57/181 (31%), Gaps = 60/181 (33%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++GP GSGK+TL AL+ L G I ++G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDG-------------------- 38
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200
I + D +I SG R
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASGSGELR 66
Query: 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC------LSRDGRTVIASIHQP 254
R+++AL ++P +L LDE TS LD+ + S TVI + +
Sbjct: 67 LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 255 S 255
Sbjct: 127 K 127
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 192 LRGISGGERRRVSIALEILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
L +SGGE +R+ +A E+L +P L LDEPT+GL + + L+ L+ G TV+
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866
Query: 249 ASIH 252
H
Sbjct: 867 IIEH 870
|
Length = 1809 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV-TQDDN 138
+PG + A++G SG+GK+TLL + +G +A + + +
Sbjct: 407 KPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP 465
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGIS 196
G +T+ E + S+ + GL +D V+ +S
Sbjct: 466 EFGEVTILEHL-------------RSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELS 509
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
G++ R +A + RP +L +DE + LD A V + + L+R+ G T+I H+P
Sbjct: 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568
|
Length = 593 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + G +L+ ++ PG L+G +G+GKSTLL ++ L + G + G
Sbjct: 6 LSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTW-G 60
Query: 121 HKTKLSFGTAAYVTQ 135
K+ Y Q
Sbjct: 61 STVKI-----GYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
G G LT L G G+GKSTL L++ +A+
Sbjct: 28 GLLPRGGLTLLAGAPGTGKSTLALDLAAAVAT 59
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.003
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
++ L V + +T L+ L + T + L+G SG GKSTLL+AL L
Sbjct: 58 YEKLGYPVLAVSAKTGEGLDELRELLKGKT-SVLVGQSGVGKSTLLNALLPELV 110
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
G SGGE++R I ++ P L LDE SGLD A V + L R+ I H
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAA 282
+ D +++L G+ V G+ +
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSGDFTLV 233
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL GL+ + P ++G +G+GKS++L+AL R+ G I+++ A
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE--LEKGRIMIDD------CDVA 1301
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIE-------MG 178
+ D + ++ + + +S +R + P+SE +ER I+ G
Sbjct: 1302 KFGLTDLRRVLSIIPQSPVLFSGTVRF-NIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L A+ G S G+R+ +S+A +L R ++L LDE T+ +D + +T+R
Sbjct: 1361 LD--AEVSEGG---ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 56/197 (28%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
+G + L+ L L + G SGSGKSTL
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTL-------------------------- 37
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE----RTIIEMGLQ 180
V E + S + RL +P + L+ + +I++GL
Sbjct: 38 --------------------VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGL- 76
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLR 238
+ L +SGGE +RV +A E+ P L LDEP++GL + + ++
Sbjct: 77 ---GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK 133
Query: 239 CLSRDGRTVIASIHQPS 255
L G TVI H
Sbjct: 134 GLIDLGNTVILIEHNLD 150
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 84 LTALMGPSGSGKSTLLDALSSRL 106
+ L G SG GKSTLL+AL L
Sbjct: 37 TSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.98 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.93 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.9 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.88 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.86 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.83 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.81 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.8 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.79 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.79 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.74 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.73 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.73 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.72 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.67 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.66 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.59 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.59 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.53 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.52 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.52 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.48 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.44 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.43 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.37 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.36 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.35 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.33 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.32 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.3 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.29 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.28 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.28 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.27 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.26 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.25 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.25 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.22 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.21 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.17 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.11 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.09 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.08 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.07 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.07 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.06 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.06 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.03 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.99 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.97 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.89 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.86 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.84 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.84 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.83 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.82 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.8 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.7 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.62 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.62 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.58 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.55 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.54 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.53 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.52 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.51 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.51 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.46 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.45 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.42 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.4 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.33 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.3 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.28 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.2 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.18 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.16 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 98.14 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.12 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.12 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.11 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 98.09 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.09 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.08 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.07 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.04 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.02 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.02 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.02 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.01 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.99 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.99 | |
| PRK13764 | 602 | ATPase; Provisional | 97.97 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.96 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 97.95 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.95 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.92 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.88 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.88 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-92 Score=781.91 Aligned_cols=488 Identities=43% Similarity=0.693 Sum_probs=427.1
Q ss_pred CCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-
Q 008669 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (557)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~- 124 (557)
...++.++|+|+++..+.+....+++|+|||++++|||++||||||||||||||++|+|+...+...+|+|++||++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998654334688999999999999999999999999999999999999875567999999997543
Q ss_pred -CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..++.+|||.|||.++|++||+|+|.|++.+|+|...+.++++++|+++++++||.+|+|+.+|+...|++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 2346789999999999999999999999999999888899999999999999999999999999988899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCChhHHHHHhhcc--hhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHH
Q 008669 284 EFFAQAGFPCPALRNPSDHFLRCINSD--FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (557)
Q Consensus 284 ~~f~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (557)
+||++.|++||+..||+||++++++.+ .+...+ ..+.....+.++..+...+....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE----------------------AVRIAKLINKFSQTDNLKKTLEA 317 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh----------------------HHHHHHHhhhccccchhhhhHHH
Confidence 999999999999999999999998743 111110 11111122222211100110000
Q ss_pred HhhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 008669 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 441 (557)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff 441 (557)
..... ...... .....++||.|++.|++|.+++++|||.++..|+++.+++|+++|++||+++++..++++|.|++||
T Consensus 318 ~~~~~-~~~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~ 395 (613)
T KOG0061|consen 318 LEKSL-STSKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFF 395 (613)
T ss_pred Hhhhc-cccccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Confidence 00000 000000 1112789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHH
Q 008669 442 VFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 520 (557)
Q Consensus 442 ~~~~~~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~ 520 (557)
++.++.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|+++
T Consensus 396 ~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~ 475 (613)
T KOG0061|consen 396 ILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLI 475 (613)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 99999888775 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008669 521 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 521 ~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+++..+++++++++++++.||...|.++++++++.++
T Consensus 476 ~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~ 512 (613)
T KOG0061|consen 476 ILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFL 512 (613)
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHH
Confidence 9999999999999999999999999999999988764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-89 Score=763.94 Aligned_cols=491 Identities=32% Similarity=0.526 Sum_probs=412.1
Q ss_pred CCCcceEEEEEeEEEEEEccC------------------------cccccceeceeEEEeCCeEEEEECCCCCcHHHHHH
Q 008669 45 SGDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (557)
Q Consensus 45 ~~~~~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~ 100 (557)
+...++.++|.|++|++...+ -+++.+|+|||+++++||++||+||||||||||||
T Consensus 33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~ 112 (659)
T PLN03211 33 SSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLN 112 (659)
T ss_pred CCCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 344578999999999986431 02467999999999999999999999999999999
Q ss_pred HHHcCCCCCCCceeEEEECCEeCCC-CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008669 101 ALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 101 ~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
+|+|+.+++ ..+|+|.+||++... ..++++||+|++.+++.+||+||+.|++.++.+...+.++++++++++++.+||
T Consensus 113 iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL 191 (659)
T PLN03211 113 ALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL 191 (659)
T ss_pred HHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999998763 248999999987532 235699999999999999999999998877655445566667789999999999
Q ss_pred CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 008669 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (557)
Q Consensus 180 ~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 259 (557)
+++.|+.+|+..+++||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++.
T Consensus 192 ~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~ 271 (659)
T PLN03211 192 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVY 271 (659)
T ss_pred hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999998889999999999976789
Q ss_pred hcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchH
Q 008669 260 ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTA 339 (557)
Q Consensus 260 ~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (557)
++||++++|++|+++++|+++++.+||++.|++||++.||+||++++++.+.... +. ...+.+
T Consensus 272 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~-----~~~~~~------- 334 (659)
T PLN03211 272 QMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV-----SEREKP------- 334 (659)
T ss_pred HhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-----cccccc-------
Confidence 9999999999999999999999999999999999999999999999876532100 00 000000
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHhh--hhcc--------cCccc--cCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHH
Q 008669 340 EAIKNLIDFYQTSQHSYAAKEKVEG--ISKV--------KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLR 407 (557)
Q Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~--------~~~~~--~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r 407 (557)
...+.+.+.|++... .......+. .... ..... ....+.++|++|+++|++|++++ |||+.+...|
T Consensus 335 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r 412 (659)
T PLN03211 335 NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLR 412 (659)
T ss_pred hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHH
Confidence 011223334432111 111000000 0000 00000 11234578999999999999988 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHH
Q 008669 408 LVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM-SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSA 486 (557)
Q Consensus 408 ~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~-~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~ 486 (557)
+++++++|+++|++||+++ +.++++|.|++||+++++.+. ++..++.|+.||++|+||+.+|+|++++|++|++++|
T Consensus 413 ~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~e 490 (659)
T PLN03211 413 VFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGD 490 (659)
T ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999985 678999999999998886664 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008669 487 MPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 487 lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++||+.+|++++|.++++++
T Consensus 491 lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~ 561 (659)
T PLN03211 491 LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV 561 (659)
T ss_pred HHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-86 Score=744.13 Aligned_cols=469 Identities=34% Similarity=0.571 Sum_probs=412.6
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCC
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (557)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35789999999999999999999999999999999999987754458999999997542 2457899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
|+|||.|++.++.+...+.++++++++++++.+||.+++|+.+|+. ..++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999998887766677778889999999999999999999974 367899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHH
Q 008669 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~ 303 (557)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||++.|++||+..||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhccc-C-----ccccCCC
Q 008669 304 LRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK-G-----TVLDAGG 377 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~-----~~~~~~~ 377 (557)
+++++.+.+.. ....+..+++.+.|+.++...+..+......... + ...+...
T Consensus 276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (617)
T TIGR00955 276 VQVLAVIPGSE---------------------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334 (617)
T ss_pred HHHhhcCcccc---------------------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccc
Confidence 98875431110 0011223455666766655544433332111100 0 0111245
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-hhHHH
Q 008669 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPS 456 (557)
Q Consensus 378 ~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~-~~~~~ 456 (557)
+..+|+.|+++|++|++++.||||.++..|+++.+++|+++|++||++++++.++++|.|++|++++++.|.++ ..++.
T Consensus 335 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~ 414 (617)
T TIGR00955 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINV 414 (617)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999988888765 56889
Q ss_pred HHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008669 457 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 536 (557)
Q Consensus 457 ~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~ 536 (557)
|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.+++++++++++
T Consensus 415 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~ 494 (617)
T TIGR00955 415 FTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLIS 494 (617)
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHhc
Q 008669 537 SIVPNFLMGIITGAGIQVSV 556 (557)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~~ 556 (557)
+++||..+|..+++.++.++
T Consensus 495 ~~~~~~~~a~~~~~~~~~~~ 514 (617)
T TIGR00955 495 CAFSSTSMALTVGPPFVIPF 514 (617)
T ss_pred HhcCchHHHHHHHHHHHHHH
Confidence 99999999999999988775
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-85 Score=782.52 Aligned_cols=493 Identities=24% Similarity=0.410 Sum_probs=421.6
Q ss_pred cceEEEEEeEEEEEEcc---------------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHH
Q 008669 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~ 100 (557)
+.+.+.|+||++..... +...+++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 36779999999876321 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEeCCC----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-H
Q 008669 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (557)
Q Consensus 101 ~L~g~~~~~-~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v 170 (557)
+|+|+..+. ...+|+|.+||++... .++.++||+|++.+++.+||+|||.|+++++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987531 2345999999999999999999999998876542 2334443333 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 008669 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (557)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~ 249 (557)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999987 4999999
Q ss_pred EeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccC
Q 008669 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (557)
Q Consensus 250 ~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++.+.+...... + .+ .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~---~-----~e-~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKP---G-----YE-K 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccc---c-----cc-c
Confidence 9999988999999999999999999999999999999999999999999999999876543211100 0 00 0
Q ss_pred CCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc------------------cCccccCCCCCCcHHHHHHHHHH
Q 008669 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~Q~~~L~~ 391 (557)
..+ ...+++++.|+.|+.+++..+.++..... .......+.+..||++|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 011 11235778888887665554444322100 00011234578899999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHhcCC
Q 008669 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 471 (557)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~~~er~v~~rE~~~g 471 (557)
|+++++||||.+++.|+++++++|+++|++||++++++.++++|.|++||++++.+|+++..++.++.||+||+||+.++
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 008669 472 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAG 551 (557)
Q Consensus 472 ~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~ 551 (557)
+|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||+.+|+.+++.
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 008669 552 IQVSV 556 (557)
Q Consensus 552 ~~~~~ 556 (557)
++.++
T Consensus 570 ~~~~~ 574 (1394)
T TIGR00956 570 LLLAL 574 (1394)
T ss_pred HHHHH
Confidence 87765
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-84 Score=775.06 Aligned_cols=482 Identities=28% Similarity=0.431 Sum_probs=418.5
Q ss_pred ceEEEEEeEEEEEEccCc--------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008669 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
++.+.|+||+|.++.+.. +.+.+|+|||++++||++++|+||||||||||||+|+|+.++. ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 457999999999864321 2457999999999999999999999999999999999997642 3589999999
Q ss_pred EeCCC--CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 121 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998877665556666778899999999999999999997767899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (557)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999989999999999998778999999999996 8999999
Q ss_pred Cc----chHHHHHHhC-CCC-CCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhc
Q 008669 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (557)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (557)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5789999997 664 999999999999876432100 001246788888
Q ss_pred chhhHHHHHHHhhhhccc-C--ccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 008669 352 SQHSYAAKEKVEGISKVK-G--TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (557)
Q Consensus 352 s~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~ 428 (557)
|+.++...+.+.+..... + ......++.++|++|+++|++|+++++||||.+++.|+++++++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 887766655544332211 1 1111356789999999999999999999999999999999999999999999999976
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 008669 429 Y---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFM 504 (557)
Q Consensus 429 ~---~~~~~r~g~lff~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m 504 (557)
+ .++++|.|++|++++++.+..+ ..+|.|..||++|+|||.+|+|++++|++|++++|+|+.++.+++|.+|+|||
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m 1317 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAM 1317 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 4677889999998888777554 45799999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008669 505 VRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 505 ~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+||++++.+||+|++++|++.++++++|+++++++||..+|.++++.++++|+
T Consensus 1318 ~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140 1318 VAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=768.52 Aligned_cols=496 Identities=24% Similarity=0.392 Sum_probs=420.6
Q ss_pred cceEEEEEeEEEEEEc-----------------------------cCcccccceeceeEEEeCCeEEEEECCCCCcHHHH
Q 008669 48 VSARLTWKDLTVMVTL-----------------------------SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL 98 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~-----------------------------~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTL 98 (557)
+.+.+.|+||++.... +++.++.||+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 5678999999997651 01124669999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-------CCCHHHH---
Q 008669 99 LDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK--- 166 (557)
Q Consensus 99 l~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~--- 166 (557)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|+++++.+. ..+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998765569999999987532 2467999999999999999999999998765321 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008669 167 ---------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 167 ---------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
+..++++++.+||++++||.+|+..+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHH
Q 008669 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (557)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~ 304 (557)
|+.++.++++.|+++++ .|+|+|+++|||.++++++||+|++|++|+++|+|+++++.+||+++|+.||++.||+||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987 58999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc---cCccccCCCCCCc
Q 008669 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQAS 381 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 381 (557)
++.+.+.... . +.....|..... .+++++.|+++...+...+++...... .......+.+..+
T Consensus 448 ~v~s~~~~~~--~--------~~~~~~p~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 448 EVTSKKDQEQ--Y--------WADRNKPYRYIS----VSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred HhcCchhhhh--h--------hhccCCccccCC----HHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 8775431110 0 000111111111 235788888887766655544322111 1111123568899
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008669 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFV 458 (557)
Q Consensus 382 ~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~r~g~lff~~~~~~~~~~~~~~~~~ 458 (557)
++.|++.|++|+++.++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.+|.++..++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997543 34566778889999888898888999999
Q ss_pred HhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008669 459 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASI 538 (557)
Q Consensus 459 ~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~ 538 (557)
.||+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++++++++++++
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~ 673 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASV 673 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcC
Q 008669 539 VPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 539 ~p~~~~a~~~~~~~~~~~~ 557 (557)
+||+.+|+.+++.++.+++
T Consensus 674 ~~~~~~A~~~~~~~~l~~~ 692 (1470)
T PLN03140 674 CRTMIIANTGGALVLLLVF 692 (1470)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987753
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-85 Score=739.55 Aligned_cols=476 Identities=30% Similarity=0.473 Sum_probs=427.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-Cccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFGT 129 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~-~~~~ 129 (557)
..|+|+.+++..++ +.+++|+|||+.++||.++||||+||||||||||+|+||...+ .++|+|++||.+.. . -.|.
T Consensus 788 ~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred EEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccc
Confidence 56777777665443 5688999999999999999999999999999999999997653 57999999999865 2 3477
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
+|||.|+|.|.+.+||||.|.|+|.+|+|..++.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999966 99999999999999999
Q ss_pred HhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEEEcCcch----HH
Q 008669 210 LMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----AF 283 (557)
Q Consensus 210 ~~~p-~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~ 283 (557)
+.|| .||+|||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|+ +|++||+|+..+ +.
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li 1024 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLI 1024 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHH
Confidence 9999 89999999999999999999999999999999999999999999999999999998 789999999765 45
Q ss_pred HHHHhCC-CCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHH
Q 008669 284 EFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362 (557)
Q Consensus 284 ~~f~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (557)
+||++.| .+||...|||||+++++....+. +...++.+.|++|+.+++.++++
T Consensus 1025 ~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1025 EYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHHH
Confidence 6999986 78999999999999988653211 00124789999999999998888
Q ss_pred hhhhccc-C---ccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 008669 363 EGISKVK-G---TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSC 438 (557)
Q Consensus 363 ~~~~~~~-~---~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~ 438 (557)
++..... + +...++++.+|+|.|++.+++|++..+||+|.++++|++..++.|+++|+.||+++.+..+++|..|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 8765432 2 11225678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhH-HHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHH
Q 008669 439 ASFVFGFVTFMSIGGF-PSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFF 517 (557)
Q Consensus 439 lff~~~~~~~~~~~~~-~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f 517 (557)
+|..+++..-...+.. +....||.+++||+.+|+||+.+|++|++++|+|+.++++.+|.+|+|||+|+..++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9988877655544444 445568889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 008669 518 VLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSV 556 (557)
Q Consensus 518 ~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~ 556 (557)
|+..+++.++.+.+|+++.+++||.++|.++.+.+++++
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-83 Score=763.66 Aligned_cols=480 Identities=29% Similarity=0.452 Sum_probs=415.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-Ccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFG 128 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~ 128 (557)
..++|+||++.+..++ +++.+|+|||+++++||+++|+||||||||||||+|+|+.++....+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 4589999999985322 34679999999999999999999999999999999999987433348999999998642 246
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++||+|++.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+. ..+|||||||||+||++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 79999999999999999999999988876655566677788999999999999999999863 34899999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC-eEEEEcCc----chH
Q 008669 209 ILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAA 282 (557)
Q Consensus 209 L~~~p~-llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~ 282 (557)
|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999987678899999999987 99999997 567
Q ss_pred HHHHHhCCC-CCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHH
Q 008669 283 FEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (557)
Q Consensus 283 ~~~f~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (557)
.+||+..|+ +||+..|||||++++++.+... +..+.+.+.|+.|...+...+.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHHH
Confidence 899999996 8999999999999987543110 0011355667766665554443
Q ss_pred Hhhhhcc---cCc---cccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008669 362 VEGISKV---KGT---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILAR 435 (557)
Q Consensus 362 ~~~~~~~---~~~---~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r 435 (557)
++..... ... ....+++.++|++|+++|++|+++++||||.+++.|+++++++|+++|++||++++++.++++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3322111 000 0112467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHH-HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHH-
Q 008669 436 GSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH- 513 (557)
Q Consensus 436 ~g~lff~~~~~~~~~~~~~~~~~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~- 513 (557)
.|++|+++.+..+.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..
T Consensus 1130 ~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~ 1209 (1394)
T TIGR00956 1130 MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccc
Confidence 99999988877776667789999999886 9999999999999999999999999999999999999999999988765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008669 514 ------YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 514 ------f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
|++|+++++++.++++++|+++++++||..+|.+++|.++++++
T Consensus 1210 ~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~ 1259 (1394)
T TIGR00956 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCL 1259 (1394)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988763
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=660.79 Aligned_cols=473 Identities=28% Similarity=0.469 Sum_probs=419.9
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCCHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
.++|+|+|+-++||+++.++||+||||||||++|+|.++.....+|+|.+||++.+. .++.++|++|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 469999999999999999999999999999999999987665568899999987543 246799999999999999999
Q ss_pred HHHHHHhhccCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 147 ETISYSARLRLPDK----MPWSEKR-TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 147 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
|+|.|+++++.+.. .++.++. +.++.+++.+||++|+||+||+...||+||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 2333332 267889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCCh
Q 008669 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~ 300 (557)
|+|||+.++.++++.|+++++ .+.|+++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc---cCccccCCC
Q 008669 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGG 377 (557)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~ 377 (557)
||+.++.+... . ...+...+.+....+ ..++.+.|.+++.+.+...+++..... .......+.
T Consensus 368 DfLt~vts~k~-~---------~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKKD-Q---------EQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCcc-c---------cccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 99888765210 0 011111222221112 246888999999888877766654322 122234677
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008669 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (557)
Q Consensus 378 ~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~~~~~~~r~g~lff~~~~~~~~~~~~~~~ 456 (557)
+..++|.|++.|++|.|.++.||..++..++.+.+++|+++|++||+.+ .+..+...|+|++||.+++.+|.++.+++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 777889999999999999999999999999
Q ss_pred HHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008669 457 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 536 (557)
Q Consensus 457 ~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~ 536 (557)
.++.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||+++++++++.+|+.+++++++
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHh
Q 008669 537 SIVPNFLMGIITGAGIQVS 555 (557)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~ 555 (557)
+++||+..|+.+|+..+..
T Consensus 594 ~l~~t~~~An~~g~~~~L~ 612 (1391)
T KOG0065|consen 594 SLSRTLSIANLIGGILLLV 612 (1391)
T ss_pred HhcchHHHHhhHhHHHHHH
Confidence 9999999999998876653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=409.96 Aligned_cols=217 Identities=31% Similarity=0.438 Sum_probs=198.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++||++.| ++..+|+|||+++++||+++|+|||||||||||+||.++..++ +|+|.++|++..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 48999999999 5788999999999999999999999999999999999999986 999999997542
Q ss_pred CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..++++|+|+|+.+|||++||.||+..+...- .+.++++.++++.++|+.+||.+.+|. +|.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999985432 256788889999999999999999887 56789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++..
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 7899999999999999999999887653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=407.75 Aligned_cols=220 Identities=27% Similarity=0.387 Sum_probs=200.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|..+.++...+|+|||++|++||+++|+|.||||||||+|+|.++..|+ +|+|.+||+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHH
Confidence 7899999998653223467999999999999999999999999999999999999997 9999999987421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+++||++||+++++...||.||+.|..++. +.++++.++++.++|+.+||++..+. +|.+|||||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRV 150 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRV 150 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHH
Confidence 2467999999999999999999999998775 46789999999999999999988887 5678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++||+|||||+|||.+...|+++|+++.+ .|.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999976 599999999995 789999999999999999999998876
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 230 F 230 (339)
T COG1135 230 F 230 (339)
T ss_pred h
Confidence 4
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=395.67 Aligned_cols=225 Identities=25% Similarity=0.432 Sum_probs=204.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++|+|+|+.| .++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||+++.. .
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHH
Confidence 7899999999 4688999999999999999999999999999999999999997 9999999998643 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
++++|||-|...|||++||.||+.+-..+. ++++++.+++++++++.+||++ ..++ +|++|||||+|||.
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVG 145 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVG 145 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHH
Confidence 478999999999999999999999987765 5678888999999999999975 3443 78999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||||+.+|+++++|||+++|||.++.++-+.++++.+ -|+|||++||| .+|+.+++|||.+|++|+++..++|+++.
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999977 59999999999 57999999999999999999999999886
Q ss_pred HHHHhCCCCCCCCCCChhHHHHH
Q 008669 284 EFFAQAGFPCPALRNPSDHFLRC 306 (557)
Q Consensus 284 ~~f~~~g~~~~~~~~~~~~~~~~ 306 (557)
. ||++-|+..
T Consensus 225 ~-------------~Pan~FV~~ 234 (309)
T COG1125 225 A-------------NPANDFVED 234 (309)
T ss_pred h-------------CccHHHHHH
Confidence 5 666666654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=385.15 Aligned_cols=220 Identities=33% Similarity=0.463 Sum_probs=199.7
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...++++++++++ +++.|++|||++|++||+++|+||||||||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4569999999998 6789999999999999999999999999999999999999997 9999999987431
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (557)
.++++|+++|+..||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... ++. +|.+|||||
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchH
Confidence 1367999999999999999999999975543 356788888899999999999876 444 778999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
+||++||||++.||+++++||||+||||.++..+.++++++.+ -|.|++++|||. ++++.+|||+++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999999987 499999999995 78999999999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=389.07 Aligned_cols=204 Identities=32% Similarity=0.420 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++++++.| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999999 3478999999999999999999999999999999999999996 999999999875555789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+||+|++.++|.+||+||+.++..... .++++.+++++++|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 999999999999999999999987652 4566777899999999999998887 67899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
.+|++|+||||+++||+.++..+.+.|.++.+ .++||+++|||. +|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999865 689999999995 7899999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=407.29 Aligned_cols=221 Identities=37% Similarity=0.515 Sum_probs=198.2
Q ss_pred EEEEEeEEEEEEccCcc-cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
.++++||++.| + .+.+|+||||++++||++||+||||||||||+|+|+|+..|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999999 4 578999999999999999999999999999999999999996 9999999987542
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++++||+||++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..+++ +++||+|||||++|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHH
Confidence 2467999999999999999999999999887432 245567899999999999855554 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+||+++|++|||||||+||||.++.++++.|++++++| +||+++||++ +++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999977 8999999996 68999999999999999999999888766
Q ss_pred HHHh
Q 008669 285 FFAQ 288 (557)
Q Consensus 285 ~f~~ 288 (557)
.+..
T Consensus 227 ~~~~ 230 (293)
T COG1131 227 KFGG 230 (293)
T ss_pred hhcc
Confidence 5543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=384.52 Aligned_cols=209 Identities=32% Similarity=0.465 Sum_probs=182.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++||++.|..+.. ...+|++||++|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 568999998864332 267999999999999999999999999999999999999986 9999999976431
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
+++.+|||+|+..|.|++||+||+.+...+.. .+..+.+++++++++.+||.+..+.. +|.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~----~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC----CchhcCHHHHHH
Confidence 24579999999999999999999998765542 22335667788999999998766521 567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|+|||||+.+|+++|+||||.+||+.++..++++|++++++ |+|||++|||| ++..+|||++.|++|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999874 99999999996 68899999999999984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=393.93 Aligned_cols=219 Identities=35% Similarity=0.444 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++.+||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58999999999 5688999999999999999999999999999999999999986 9999999987542
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++||||.+.....+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHH
Confidence 2367999999998888999999999984322111 11233444579999999999999998764 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||+ +.+.++||++++|++|+++++|+|++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999985 699999999996 6899999999999999999999998875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=404.74 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=199.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999999 2222999999999999999999999999999999999999997 9999999998643 34
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
|.+++|||+..+||+|||+||+.|+.+.+ ..++++.+++++++.+.++|++..|+ +|++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHH
Confidence 78999999999999999999999998876 45688889999999999999999988 45789999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+++|+++|||||.|+||+..+..+...|+++.+ -|.|+|.+|||. .|+..++|||.+|++|++...|++.++.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999976 589999999995 68999999999999999999999998754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=387.17 Aligned_cols=218 Identities=30% Similarity=0.467 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--c
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--~ 127 (557)
..++++|+++.|. .+++|+||||++++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3589999999993 226999999999999999999999999999999999999986 99999999875433 3
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 128 ~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.+||||||.. .-|| +||+|.+.++...+.. ...+ ++.++.+++.|+.+|+.+..|+.+| +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 5799999964 3355 6999999987433221 1222 3346889999999999999999887 499999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||+ ..+.++||+|+.|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999999999999999996 68999999999995 678899999887
Q ss_pred HH
Q 008669 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 54
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=406.25 Aligned_cols=218 Identities=27% Similarity=0.450 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
..++++|+++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 358999999999 4688999999999999999999999999999999999999997 9999999998642 3
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+|.+|+|||+-.|||+|||+||+.|+.+.+ ....+++.++++.++++.++|++.+++ ++.+|||||||||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234456788999999999999997776 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||. +|+..++|||.+|++|++...|+|+++-
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999976 699999999995 7899999999999999999999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=389.03 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~~~~- 125 (557)
|+++++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..|+ +|.|.+||+ +...
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 457888988888 4677999999999999999999999999999999999999997 999999999 4322
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..++||||+|+..+|++|||.||+.|+.+.+ ....++.+.+.++.++|+.+.|++..+. +|.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 3478999999999999999999999998776 2334567788999999999999988776 6789999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
++||||+.+|++||||||+++||..-+.++.+.|+++.++ |.|++++|||+ ++++++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 799999999999999999999999988
Q ss_pred HH
Q 008669 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 53
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=366.94 Aligned_cols=217 Identities=31% Similarity=0.424 Sum_probs=199.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|++++++++|. ...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+... .+
T Consensus 2 l~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHh
Confidence 67889999883 2345999999999999999999999999999999999999997 9999999987432 25
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+++|.++.+..++..||++|||.|.+++. ++...+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHH
Confidence 78999998889999999999999999886 56677888999999999999999999876 59999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||++||++++|||||||||..+...+.+.+++++++|++||++||. .+++..+||+|++|++|++++.|+.++...
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999 589999999999999999999999887654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=373.48 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=194.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.|+++||++.|+ +++++|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4689999999995 4688999999999999999999999999999999999999886 9999999976321
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (557)
.++++||++|++.+.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+++|+.+.+-++.+ .||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 2467999999999999999999999875333221 12234455678889999999988877554 699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|||+|||+|||||+.+|+++|.|||+++|||.++.++++.|+++++ +|.|||++.|+. +-+.++|||++-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999986 799999999995 78999999999999999999
Q ss_pred EcCcchHHH
Q 008669 276 FGETSAAFE 284 (557)
Q Consensus 276 ~G~~~~~~~ 284 (557)
+|+++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=357.06 Aligned_cols=211 Identities=29% Similarity=0.385 Sum_probs=192.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++|+|+++.|. .++.+|+||||.+++||++-|+||||||||||||+|.+...|+ +|+|++||+++..
T Consensus 2 I~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeeccccccccc
Confidence 78999999984 3477999999999999999999999999999999999999996 9999999987421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+++||+|+||..+.++.||+||+.|+.+.. +.+.++.++++.++|+.+||.+.++. .|.+|||||+|||
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRv 146 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRV 146 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHH
Confidence 2478999999999999999999999997765 45678889999999999999988776 5678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
+||||++.+|++||.||||.+|||..+.+|++++.++.+.|.||++.||| ..-+..+-.|++.|++|+++....
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999 567888889999999999986543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=391.73 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=194.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.++++||++.| +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999998 3467999999999999999999999999999999999999986 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.+||+||++.+++.+||+||+.+.+.++ ..+..+.+++++++++.++|.+..++.++ +||||||||++||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876553 23344555678899999999988888664 6999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987899999999995 68999999999999999999999988754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=393.38 Aligned_cols=219 Identities=26% Similarity=0.393 Sum_probs=193.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+ +..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998421 11357999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|+||+..+++.+||+||+.+..... ..++.+.++++.++++.+||.+..|.+ +++|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1357999999999999999999999876542 234556677899999999999887764 467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999874 99999999995 688899999999999999999998776
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=395.36 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=195.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 9999999987532 24
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+||++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 244566678899999999999888774 4679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|+++||||||++||+.++..+.+.|+++.++ |.|+|++||++ +++..++|++++|++|+++..|+++++.+
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999774 89999999996 68999999999999999999999987753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=360.46 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=193.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++||++.| +++.+|+|||+.|++++++|++|||||||||||+++....+ |..+.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 57889999999999999999999999999999999998754 445688999999997532
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++++|+|+|.|..|| +|++||+.|+.++.. ...++.++.|+..|+...|.+--.....+ ...+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHH
Confidence 2478999999999999 799999999988752 22367778899999998886533222322 4567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||||+.+|++||||||||+|||.+..+|-+++.+|+ +.-|||++||.+ ..+.+..|+...+..|+++++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999997 469999999995 7899999999999999999999998
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 234 ~iF 236 (253)
T COG1117 234 KIF 236 (253)
T ss_pred hhh
Confidence 764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=395.39 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.|. +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2367999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|++.+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234556667899999999999887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999775 99999999995 6899999999999999999999998764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=392.82 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||+++.. ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999986 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. ++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 234566678899999999998877764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++ +++..++|+|++|++|+++..|+++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 6899999999999999999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=393.51 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~--G~I~~~G~~~~~--- 125 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 48999999998 3457999999999999999999999999999999999999886 7 999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++||+|+..+||++||+||+.|+.+.+ ..+..+.+++++++++.++|++..++. +++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999986543 244566677899999999999888775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++||++ +++..++|+|++|++|+++..|+++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999995 6899999999999999999999998774
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=363.34 Aligned_cols=221 Identities=28% Similarity=0.366 Sum_probs=189.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++||++.|..++. -..+|+||||++.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 35899999999953221 125999999999999999999999999999999999999996 9999999976432
Q ss_pred --CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.+.+||||+ .+.|..||++.|.-+... .+.++. ++++.++++.+||.+..-. ++|.+|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLD----RRPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHh----cCchhcChhHHH
Confidence 246799999997 588999999999876543 233333 3448999999999764322 377899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||||+.+|++||||||||+||+..+.+|+++|.++++ .|.|.|++||| ...+..+||||++|++|++++.++.+
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999999999987 58999999999 57899999999999999999999998
Q ss_pred hHHH
Q 008669 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++..
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=389.22 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=195.0
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...++++||++.| +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999998 4567999999999999999999999999999999999999986 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.+||+||++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ +||||||||++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHH
Confidence 2356999999999999999999999865543 12334455677889999999988888664 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999988899999999995 78999999999999999999999988764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=370.38 Aligned_cols=215 Identities=31% Similarity=0.472 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+||+||+.+...... ..+..+..+++.++++.+||.+..++.+ ++|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13469999999999999999999998754221 1234455567889999999987776654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 678899999999999999999987654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=390.06 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=194.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
|.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 358999999998 3467999999999999999999999999999999999999886 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++||+|++.+||++||+||+.|+...... ...+.++.+++++++++.++|.+..+++ +++|||||||||+|
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 147 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVAL 147 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 35799999999999999999999998653211 1234555667899999999998877764 46799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++..+||+|++|++|++++.|+++++.
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999996 6899999999999999999999988774
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=391.09 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 358999999998 3467999999999999999999999999999999999999986 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++||+|++.+||++||+||+.|+.+.+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 367999999999999999999999986533 234556667889999999999888774 467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999874 99999999996 6899999999999999999999988764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=368.47 Aligned_cols=217 Identities=31% Similarity=0.458 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.++++|+++.|+. ++.+|+|+|+++++||.++|+|+||||||||+++|+|++.|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5789999999842 268999999999999999999999999999999999999996 899999998743
Q ss_pred CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 125 LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 125 ~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..++++|||+|++ .++. -||.|.+.|+.... ..+.++.+++++++++.+|+.+.++. .+..||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqR 146 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQR 146 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceee
Confidence 2347799999997 4454 49999999997654 45677889999999999999998776 557899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++||| .+.+..++|++++|++|+++++|++.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999886 7999999999 578999999999999999999999877
Q ss_pred HHH
Q 008669 282 AFE 284 (557)
Q Consensus 282 ~~~ 284 (557)
+.+
T Consensus 226 i~~ 228 (235)
T COG1122 226 IFN 228 (235)
T ss_pred Hhh
Confidence 654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=380.55 Aligned_cols=218 Identities=29% Similarity=0.398 Sum_probs=191.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 458999999998 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++.+ ++||||||||++|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 1356999999999999999999998755432 1233444566788999999988877765 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 68889999999999999999999887654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=362.39 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.|... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 4689999988311 01157999999999999999999999999999999999999886 9999999987654446799
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.+++.+|++||+.+....+ ........++++++++.++|.+..++.+ ++||||||||++|||||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233444567889999999987766644 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcc
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (557)
+|+++||||||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 589999999996 57889999999999 79999888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=408.34 Aligned_cols=250 Identities=30% Similarity=0.447 Sum_probs=210.8
Q ss_pred CchhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEe
Q 008669 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (557)
|.|..|++|++|+++.+|..+..+ -..| ......|+|+|+++.|+.+ ++..||+|+||+|+
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G--~~~p---------------~~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTG--TLAP---------------DHLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCC--cccc---------------ccccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 789999999999999999876421 0011 0123469999999999754 45789999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
|||++||+||||+||||+.++|-.+++|+ +|+|.+||+|++. .+++||+|.|+|.+|.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999997 9999999998642 24789999999999998 99999999864
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 156 RLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 156 ~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..+.++.. +.+.+.+ .++++.+||.||+ ++.+||||||||++|||||++||.||||||.||+||+++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 22333332 2333444 3678899999997 6678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
..+.+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+-+|+++
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998865 599999999964 468899999999999999998777654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=362.85 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999986431 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.++|.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999999999999999875443 2233445567889999999987777754 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999876 89999999996 67889999999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=360.96 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=182.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTY-----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEe-----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+..... .....+.++++.++++.++|.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1233444567889999999987777654 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999976 489999999996 6788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=386.90 Aligned_cols=216 Identities=27% Similarity=0.394 Sum_probs=193.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999998 3457999999999999999999999999999999999999886 9999999987532 24
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.+|||+|++.+||++||.||+.|+.+.+ ..+..+.++++.++++.++|.+..++. +++|||||||||+|||
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALAR 162 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234566677899999999998877764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999866 589999999995 6899999999999999999999998765
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=365.36 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=187.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
|.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 358999999998 3467999999999999999999999999999999999999886 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.+ .+||||||||++|
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 147 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVAL 147 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHH
Confidence 35699999999999999999999987543211 00123334566788999999987766644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999999874 89999999996 578899999999999999999987664
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=383.51 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=190.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+ +.++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998411 11357999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+++.+||+||+.+..... ..+..+.++++.++++.+||.+..++. +++||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999876543 233445567789999999998877764 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999764 89999999995 678899999999999999999998776
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=386.87 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 2334555678899999999988777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ +++..+||++++|++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999995 6889999999999999999999988764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=363.26 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999986421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHH
Confidence 1245999999999999999999999865432 1223444567889999999987777644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999987899999999996 578999999999999999999987654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=376.28 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.+||+||++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.+ +.||||||||++||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999876653 2234455567899999999998888765 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+||+++|++|||||||+|||+.++..+++.|+++++ ++|||++||++ +++.++|||+++|++|++++.|++++...
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999995 68999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=363.99 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRF-----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEE-----CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 4688999988 2456999999999999999999999999999999999999886 99999999875321
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
...++|++|++.+++.+||+||+.+......... ....+..+++.++++.+||++..++.+ ++||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHH
Confidence 2359999999999999999999998754321110 013344567889999999987776644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987899999999996 67889999999999999999998
Q ss_pred cchH
Q 008669 279 TSAA 282 (557)
Q Consensus 279 ~~~~ 282 (557)
+++.
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 7765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=359.86 Aligned_cols=207 Identities=27% Similarity=0.383 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999998831 1246999999999999999999999999999999999999886 9999999987521
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+||+||+.+....+ .....+.++++.++++.+||.+..++.+ .+||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875432 1233445567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999996 678889999999999974
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=372.93 Aligned_cols=231 Identities=26% Similarity=0.389 Sum_probs=193.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999998421111236999999999999999999999999999999999999886 9999999987531
Q ss_pred ---CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 008669 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ---~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++||+|++ .+++ .||.||+.|+.... ..+..+.++++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 134699999986 5665 59999999876432 234556667889999999996 35555 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987899999999996 678899999999999999999999
Q ss_pred chHHH---HHHhCCCCCCC
Q 008669 280 SAAFE---FFAQAGFPCPA 295 (557)
Q Consensus 280 ~~~~~---~f~~~g~~~~~ 295 (557)
++... .++..|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 88642 34556666554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=371.38 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.|.......+.+|+||||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999988421111256999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHH
Q 008669 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGer 200 (557)
..+.+|||+|++. .+...||+||+.+..... ..+.++..++++++++.+||. +..++ .++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1356999999863 233469999999875432 234556667889999999997 55565 4467999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++|||+++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999874 99999999995 678889999999999999999998
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8764
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=361.41 Aligned_cols=218 Identities=26% Similarity=0.386 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+..+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 68899999883110 0127999999999999999999999999999999999999886 89999999875321
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.++|.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHH
Confidence 356999999999999999999998875432 1233444567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||++|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999775 89999999996 678899999999999999999987654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=376.62 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=183.0
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEccCCCCCCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~l 143 (557)
++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 357999999999999999999999999999999999999886 99999999875321 34699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008669 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
||+||+.+.+..+ ..+..+.+++++++++.+||.+..++.+ +.||||||||++||+||+++|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2334455567899999999988877755 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999987899999999995 68899999999999999999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=356.02 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=182.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRF-----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEE-----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999987532 224
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.+ +.||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 2234445567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 6788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=358.04 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468899998831 1267999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+ ..+..+..++++++++.++|.+..++.+ +.||||||||++|||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875433 1233444567889999999987777654 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999976 59999999996 578889999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=338.01 Aligned_cols=213 Identities=29% Similarity=0.416 Sum_probs=183.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
+.+++++++|.. .==..++.+++||++||+||||||||||||+|+|+..|. +|+|++||++... ..+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 456677777721 223578899999999999999999999999999999986 9999999997432 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
-++.++|+.++|.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+.. |.+|||||||||++||+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHH
Confidence 68999999999999999999998743211 12 345567899999999999988775 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+++-+||+||||+|+|||.-+.+++.++.++++ ++.|++++||+| +++.+++|+++++++|+|.++|+.++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999986 689999999998 6899999999999999999999987654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=370.75 Aligned_cols=220 Identities=25% Similarity=0.324 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|....+..+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999998421111256999999999999999999999999999999999999886 9999999987531
Q ss_pred ----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008669 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
..+.++||+|++ .+++ .||+||+.|+.... ..+..+.+++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHH
Confidence 124699999986 4554 69999999875432 234555567789999999996 455654 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||||++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999764 99999999995 6788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=372.42 Aligned_cols=220 Identities=25% Similarity=0.357 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++|+++.|..+......+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48899999998422111246999999999999999999999999999999999999886 899999986431
Q ss_pred -----------------------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008669 125 -----------------------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 125 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
...+.+|||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 0124689999985 344 469999999875432 34455666789999999999
Q ss_pred C-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 008669 180 Q-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 180 ~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 258 (557)
. +..++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++
T Consensus 155 ~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~ 228 (305)
T PRK13651 155 DESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNV 228 (305)
T ss_pred ChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHH
Confidence 6 556654 467999999999999999999999999999999999999999999999987899999999995 678
Q ss_pred HhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 259 FELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.++||||++|++|++++.|++++..
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999999999999988764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=354.83 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999988 3456999999999999999999999999999999999999886 9999999986532 23569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+|++||+.+....+ ..+..+.++.+.++++.+|+.+..++.+ ++||||||||++||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875443 1233445567889999999987777644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5788899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=356.04 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+... ...+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6889999988321 01126999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 2234455677889999999987777654 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999987899999999996 6788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=359.37 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~-----~~~~~~~G~I~~~G~~~~~- 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999988 3457999999999999999999999999999999999998 665 8999999987421
Q ss_pred ------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008669 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++.++ .+||+||+.+....+. .....+.++++.++++.+||.+..++.+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 134699999999888 7899999998754321 11222345678899999999876655420 36799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578899999999999999999987
Q ss_pred ch
Q 008669 280 SA 281 (557)
Q Consensus 280 ~~ 281 (557)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=348.19 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=196.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|..+||.++| +.++++++||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58889999998 5688999999999999999999999999999999999999997 9999999998542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+..+||+||++..|-.|||+||+......+... ....+.+.+++++|++++|.|..+++- ..||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 1235899999999999999999999887765322 223456667889999999999998853 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|||||+.+|+.++||||++|+||.+..+|.++++.|++.|..|+++-|+. .|...+|||.+++++|++.++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999996 58899999999999999999999998764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=379.59 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=183.2
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cccEEEEccCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVTQDDN 138 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~ 138 (557)
.+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 466999999999999999999999999999999999999986 99999999875321 357999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 008669 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 218 (557)
+||++||+||+.|..... ..++++..+++.++++.+||++..+++ +..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 334556677899999999998777764 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||++||+.++..+.+.|+++.+ .|+|||++||+. +++.++||+|++|++|+++..|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999976 489999999995 6889999999999999999999988764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=360.77 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=183.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889999882 1257999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++.+||+||+.+...... ..........+++.++++.++|.+..++. +++||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12469999999999999999999987532110 00111223346678899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999976 489999999996 6788899999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=371.27 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=191.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++|+++.|.......+.+|+|||+++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 359999999998421111246999999999999999999999999999999999999886 9999999976421
Q ss_pred -----------------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 008669 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (557)
Q Consensus 126 -----------------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 185 (557)
.++.++||+|++ .+++. ||+||+.|+.... ..+..+..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999986 56664 9999998875322 234455566788999999996 44554
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008669 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4567999999999999999999999999999999999999999999999987899999999995 5788999999
Q ss_pred EEeeCCeEEEEcCcchHHH---HHHhCCCCCC
Q 008669 266 YLLSGGKTVYFGETSAAFE---FFAQAGFPCP 294 (557)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 294 (557)
++|++|++++.|++++... .+...+...|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999887642 3344444433
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=386.62 Aligned_cols=248 Identities=30% Similarity=0.394 Sum_probs=206.2
Q ss_pred CchhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEe
Q 008669 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (557)
|.|.+|++++..++++++....- .+..+....+++.++.+|+++.++ +++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~---------------~~~~~~~~~~~~ei~~~~l~~~y~----~g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGS---------------GEKAEVANEPPIEISLENLSFRYP----DGKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCC---------------ccccccccCCCceeeecceEEecC----CCCcccCCceeEec
Confidence 57889999999999876653320 111123344566788889999985 33489999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
+|+.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++.+|+. |++||+.++..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~- 420 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP- 420 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-
Confidence 99999999999999999999999999986 9999999987532 24789999999999998 99999998732
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 156 RLPDKMPWSEKRTLVERTIIEMGL------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++ +.+.++++..|| ++..|+.+|+ +.++|||||+|||++||||+++++++++||||++||.++
T Consensus 421 ----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 421 ----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred ----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 1223 335556666665 3467888987 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..|.+.|.+++++ +|+|++||++ ....-+|+|++|++|+++..|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 9999999996 3467899999999999999999888753
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=356.35 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|...+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999883110 0157999999999999999999999999999999999999886 9999999987532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||.+..++.+ +.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHH
Confidence 1246999999999999999999999876443 1223344567889999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 589999999996 4565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=356.44 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999987 3457999999999999999999999999999999999999886 8999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 12459999999999999999999998754321 122345567778887 576666664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987889999999996 678899999999999999999987654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=373.45 Aligned_cols=224 Identities=26% Similarity=0.387 Sum_probs=191.4
Q ss_pred eEEEEEeEEEEEEccCc--------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008669 50 ARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
..|+++||++.|..+++ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCE
Confidence 46999999999853211 1356999999999999999999999999999999999999885 999999998
Q ss_pred eCCC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCc
Q 008669 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW 190 (557)
Q Consensus 122 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 190 (557)
+... .++.++||+|++ .++|.+||.||+.+......+ ..+.++.++++.++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~----- 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR----- 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC-----
Confidence 7532 135699999997 588999999999987543211 234566677888999999995 34454
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
++++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999774 89999999995 67889999999999
Q ss_pred CCeEEEEcCcchHH
Q 008669 270 GGKTVYFGETSAAF 283 (557)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (557)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (331)
T PRK15079 237 LGHAVELGTYDEVY 250 (331)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=358.23 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 6899999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..++. ++.||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHH
Confidence 13469999999999999999999988642111 223444556788999999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +++..+||++++|++|++++.|++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 678889999999999999999987765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=409.86 Aligned_cols=249 Identities=29% Similarity=0.366 Sum_probs=205.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+...|.+|+.++++.+|+.+.-- .+ . ........++++|++++|.. .+..+|+|+|++|+|
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~----~~--------~----~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDK----TL--------I----HLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccc----cc--------c----cccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 45788999999999888855300 00 0 11123346999999999953 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|++.|. +|+|.+||.+.+. .++++|||+||+.+|.. |++||+.++...
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~- 573 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPE- 573 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 9999999998532 25789999999999988 999999987432
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.+.++. .+.+.+.+. .++..+||.+|+ +..+||||||||++|||||+++|+||+||||||+||+.+++
T Consensus 574 ----~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 574 ----ATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 222222 222333332 467789999997 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.|.+.|.++. +|+|+|+++|+++ ..+.||||++|++|+++.+|+.+++..
T Consensus 647 ~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 647 IILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999985 4799999999974 688999999999999999999998875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=367.81 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=187.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
|.++++|+++.|..+....+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 358999999998421111246999999999999999999999999999999999999886 8999999987521
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.++.+|||+|++ .+++ .||+||+.|+.... ..+..+..+++.++++.+||. +..++ .++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSG 148 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCH
Confidence 134699999986 4665 49999999875432 234555667789999999996 55665 3467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++|||+++|++|++++.
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 589999999995 678899999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 228 g~~~~~~ 234 (286)
T PRK13646 228 TSPKELF 234 (286)
T ss_pred CCHHHHH
Confidence 9987754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=359.82 Aligned_cols=216 Identities=30% Similarity=0.410 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 38899999998 3457999999999999999999999999999999999999886 8999999986431
Q ss_pred --------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 --------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||.+..++. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988543211 123344556788899999998776664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999995 6788999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 87665
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=381.67 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=190.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 48999999998 3578999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..++++||+|++.+++.+||+||+.++...+... .....+.+++++++++.+|+.+..++.+ ++||||||||++
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999988999999999864321100 1112334567899999999998887754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987889999999995 7889999999999999999999998753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=350.73 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=205.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-Cccc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~ 129 (557)
.|+++++++++ +++.+++|+||++++|++.+++|||||||||++++|.|++.|+ +|+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58999999999 6789999999999999999999999999999999999999996 9999999998653 3467
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
|||+|.+..|++.+||.|.|.|.+.++ +++.++.++.++.+|+++++......+| .+||.|++|++.+..++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999987 6788999999999999999988777655 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHH
Q 008669 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 287 (557)
+++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|+ .+.+.++||++++|++|+.|.+|+.+++...|.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 578999999999999999999999999887553
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=363.29 Aligned_cols=216 Identities=25% Similarity=0.420 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhh
Confidence 58999999988 3467999999999999999999999999999999999999886 9999999987531
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||.||+.+...... .....+.++++.++++.+||.+..++.+ +.||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 151 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARR 151 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 12469999999999999999999988643211 1233444566788999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 89999999995 67889999999999999999998776
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 231 ~ 231 (269)
T PRK11831 231 L 231 (269)
T ss_pred H
Confidence 5
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=358.24 Aligned_cols=214 Identities=27% Similarity=0.459 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 52 LTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
++++|+++.+. + +.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 46889999883 3 56999999999999999999999999999999999999886 8999999987432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.++|.+ ..++ .++.||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHH
Confidence 1346899999999999999999999875432 2234445567889999999985 5555 3467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|++++.
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 578899999999999999999987654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=362.93 Aligned_cols=216 Identities=27% Similarity=0.358 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 1356999999999999999999999999999999999999886 99999999875321
Q ss_pred -cccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 -FGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+.++|++|++. .++..||+||+.|..... .....+.++++.++++.+||.+..++.+ ..||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHH
Confidence 256999999963 345679999999874422 2334455567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999995 678899999999999999999998653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=360.25 Aligned_cols=218 Identities=30% Similarity=0.389 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899999882 1456999999999999999999999999999999999999886 9999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--P---DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++.+||+||+.+...... . ......+.++++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13469999999999999999999987532100 0 0011233456788899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999976 489999999996 5788999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=351.32 Aligned_cols=220 Identities=28% Similarity=0.397 Sum_probs=196.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++.+||++++ ++-.+++|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 47899999999 6788999999999999999999999999999999999999997 99999999975421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL--------PD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
+..++.-||...+|++|||.||+..+...+. +. ....++..+++.++|+.+||.+.+|+..| +|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cC
Confidence 2457889999999999999999998855321 11 11345667889999999999999999876 49
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++++ .|.||+++-|+. ..+.++||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999999999999999988 579999999995 7899999999999999999
Q ss_pred EEcCcchHHH
Q 008669 275 YFGETSAAFE 284 (557)
Q Consensus 275 ~~G~~~~~~~ 284 (557)
++|+|+++.+
T Consensus 230 AeG~P~eV~~ 239 (250)
T COG0411 230 AEGTPEEVRN 239 (250)
T ss_pred ccCCHHHHhc
Confidence 9999998764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=351.47 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=179.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999988 2467999999999999999999999999999999999999886 9999999986431 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+....+ .. .+++++++++.++|.+..++.+ +.|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 11 1345788999999988777644 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ +++.+++|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999996 5788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=354.25 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 6789999988 3467999999999999999999999999999999999999886 9999999986532 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999998888999999998865432 2233444567888999999987777654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++. .+|++++|++|++++.|++++..
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 589999999996 4565 59999999999999999876654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=358.44 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.......++
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999987643334689
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 223444556788999999998766664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcc
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (557)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++..+||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999855 589999999996 67889999999998 59999887654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=351.28 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=178.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 68999999883 1356999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+|++||+.+....+ .......++++.++++.++|.+..++.+ +.||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987666644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999987799999999996 67888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=404.34 Aligned_cols=245 Identities=24% Similarity=0.371 Sum_probs=196.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++.... .+ .. .........++++|+++.+. +++.+|+|+|++++|
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~---~~-----------~~--~~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ---QG-----------EK--ELASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC---CC-----------cc--ccCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 567899999999986553211 00 00 00001123599999997653 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+++|+|++ |+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 75 8999999988542 24679999999999987 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 449 ---~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 ---DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred ---CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 223333 333333333 45678999997 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 521 e~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 521 EQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999885 5799999999973 467799999999999999999877653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=359.02 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=199.9
Q ss_pred eEEEEEeEEEEEEcc-------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 008669 50 ARLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~ 110 (557)
..++++|+++.+... +.+...-++|+|++++.||++.|||-||||||||+++|.++..|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 358889998877531 012234689999999999999999999999999999999999996
Q ss_pred CceeEEEECCEeCC---------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 008669 111 FLSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (557)
Q Consensus 111 ~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (557)
+|+|+++|.++. .+++++++|||...|+|+.||.||..|+..++ +++++++++++.++|+.+||..
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 999999998742 13467999999999999999999999998876 6789999999999999999999
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHh
Q 008669 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFE 260 (557)
Q Consensus 182 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~ 260 (557)
..+. +|++|||||||||.|||||+.+|+|||+|||+|+|||--+.++-+.|.+|.+ -++||+++|||. +|+.+
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 8887 5678999999999999999999999999999999999999999999999976 589999999995 79999
Q ss_pred cCCeEEEeeCCeEEEEcCcchHHH
Q 008669 261 LFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 261 ~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.|||.+|++|+++..|+|+|+..
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999999864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=352.44 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 489999999884211 1246999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++.+++.+|++||+.+..... .....+.++++.++++.+||.+..++. +++|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 146999999999999999999999865432 123344556788999999998776664 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999996 45555 589999999999988764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=364.18 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|.......+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 57899999988311101256999999999999999999999999999999999999986 9999999987521
Q ss_pred ----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008669 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++ .++ .+||+||+.+..... ....++..++++++++.+||. +..++.+ +.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHH
Confidence 124699999996 355 579999998865432 233455566789999999997 5666644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999999995 67889999999999999999999
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 87754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=350.31 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999883 1256999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+||++..++.+ ++||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHH
Confidence 1246999999999999999999999875432 1234445567889999999987776644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=355.88 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=185.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~----- 124 (557)
|.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 358999999998 3467999999999999999999999999999999999999886 999999998642
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
..++.++|++|++.+++.+||+||+.+. .... .....+..+++.++++.+|+++..++.+ +.|||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 144 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSG 144 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 0124699999999999999999999753 2221 1233444567889999999987766644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.+++|++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 5778899999999999999999
Q ss_pred Ccch
Q 008669 278 ETSA 281 (557)
Q Consensus 278 ~~~~ 281 (557)
++++
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 8764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=349.80 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+||++++| +++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRY-----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEE-----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 4689999988 3357999999999999 99999999999999999999999886 9999999986432 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+ ..||||||||++|||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999865443 1223344567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5778899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=356.05 Aligned_cols=216 Identities=24% Similarity=0.447 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48899999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.+...... .....+.+.+++++++.+|+.+..++. ++.||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 12469999999999999999999987643321 122344556788999999998766654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999987899999999996 678899999999999999999987765
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=358.11 Aligned_cols=227 Identities=28% Similarity=0.388 Sum_probs=194.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKTK----- 124 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~-~~~~~G~I~~~G~~~~----- 124 (557)
|+++||++.|...++ ...+++||||++++||++||+|+|||||||+.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999975432 4679999999999999999999999999999999999997 4 3346899999998631
Q ss_pred ----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+.+.++||||++ .|.|.+||.+.+.-...... .. .+++.++++.++|+.+||.+... +-+.+|++|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSG 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCC
Confidence 1235799999996 68999999999887765432 12 35667788999999999986321 22448999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||. .-+.++||||.||+.|++|+.
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999999987 699999999995 689999999999999999999
Q ss_pred cCcchHHH
Q 008669 277 GETSAAFE 284 (557)
Q Consensus 277 G~~~~~~~ 284 (557)
|+++++..
T Consensus 236 g~~~~i~~ 243 (316)
T COG0444 236 GPVEEIFK 243 (316)
T ss_pred CCHHHHhc
Confidence 99987653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=357.48 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++||++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 38999999998 3467999999999999999999999999999999999999886 8999999986421
Q ss_pred -------------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 008669 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (557)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~ 191 (557)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. ++ .
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12469999999999999999999987542111 123444566788999999997653 44 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++|||+++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 467999999999999999999999999999999999999999999999987899999999996 6788899999999999
Q ss_pred eEEEEcCcchH
Q 008669 272 KTVYFGETSAA 282 (557)
Q Consensus 272 ~iv~~G~~~~~ 282 (557)
++++.|++++.
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999987664
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=343.15 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||+..| +..++|++||+++++||+++|+|+||||||||||+|+|+.++. +|+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 48899999998 5688999999999999999999999999999999999999885 89999999986421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
+..++||||...+||.|||+|||..++..+.. +...+...+++.+.|- |.+..++.-| .|||||||.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 35689999999999999999999998654421 1111122666666664 5556666554 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++ ...+.+++||.++|.+|+++++|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-ARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 7899999888 5789999999999999999999999887
Q ss_pred HH
Q 008669 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
..
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=376.55 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=179.2
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cccEEEEccCCCCC
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVTQDDNLI 140 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~l~ 140 (557)
.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... ++.++||+|++.++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4899999999999999999999999999999999999886 99999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008669 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
+++||+||+.+....+ ..+..+.++++.++++.+||.+..++. +++|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 233445566788999999998877764 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|+++..|++++..
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999976 589999999995 6788999999999999999999887654
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=350.55 Aligned_cols=217 Identities=47% Similarity=0.721 Sum_probs=182.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSGTILLNGHKTKL--S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~---~~~~~~G~I~~~G~~~~~--~ 126 (557)
+.|+|+++.+...+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|++... .
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQF 79 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHh
Confidence 67999999985322 13679999999999999999999999999999999999988 54 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
++.++|++|++.+++.+||+||+.+......+..........++++ .++.+++.+..++. ++.||||||||++|
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 154 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSI 154 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHH
Confidence 3569999999999999999999998765432221122223334555 88888988766664 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||+|+.+|+++||||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998778999999999745789999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=361.51 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999999832 11245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++ ..++.+||+||+.|..... ..+.++..+++.++++.+||.+..+..+ ..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHH
Confidence 124699999997 4677789999999875432 2345556677899999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|++++..
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999874 99999999996 456 589999999999999999988764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=362.38 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=184.8
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 008669 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------- 125 (557)
.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 456777776 4567999999999999999999999999999999999999886 8999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++.+ ++||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 489999999995 678899999999999999999987765
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=358.07 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999998 3467999999999999999999999999999999999999886 999999998754334679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++. +..||||||||++|||+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987521 0 1235678899999998776664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5788899999999999999888754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=354.28 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=184.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 6899999988 3456999999999999999999999999999999999998762 1128999999987532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++ +|++||+.+....+. ..+..+..+.+.++++.+||. +..++ .++.||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999998888 899999998754321 123344556788999999997 54554 44679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ +|+|++||++ .++.+++|++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999764 8999999996 57889999999999999999998
Q ss_pred cchH
Q 008669 279 TSAA 282 (557)
Q Consensus 279 ~~~~ 282 (557)
+++.
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 7765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=353.82 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 48999999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... ...+..+.+.++++.+ ++.+..++. ++.||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998864321 1222334566777777 476555553 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999987899999999996 6789999999999999999999887663
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=353.29 Aligned_cols=216 Identities=24% Similarity=0.402 Sum_probs=185.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 3 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 3 LYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred EEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHH
Confidence 7899999988 3457999999999999999999999999999999999999886 9999999986532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~ 149 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQK 149 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 123599999999999999999999986432100 0 0112334567889999999987777654 56999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999999976 68999999995 6788999999999999999999876
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=348.60 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 68899999883 2356999999999999999999999999999999999999886 9999999986431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|++||+.+..... .....+..+.++++++.+++.+..++. ++.||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1246899999998888899999998875432 223444455678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++..+||++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999987789999999996 6788899999999999985
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=347.98 Aligned_cols=201 Identities=30% Similarity=0.417 Sum_probs=172.5
Q ss_pred EEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Cccc
Q 008669 53 TWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (557)
+++|+++.|. + +.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... ..+.
T Consensus 1 ~~~~l~~~~~-----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeC-----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 3678888872 3 67999999999999999999999999999999999999886 9999999987531 2356
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 130 AAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 130 ~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
++|++|++. .+..+|++||+.+..... . . ..+++.++++.+||.+..++.+ +.||||||||++||||
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHH
Confidence 999999974 234579999998864322 1 1 1246788999999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999987899999999996 5788899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=366.61 Aligned_cols=222 Identities=24% Similarity=0.297 Sum_probs=190.3
Q ss_pred EEEEEeEEEEEEccCc-----ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 008669 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~ 125 (557)
.|+++||++.|....+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 4899999999853211 1357999999999999999999999999999999999999885 8999999987521
Q ss_pred --------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 008669 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (557)
Q Consensus 126 --------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 194 (557)
.++.++||+|++ .+.|.+||.+++........ .....+.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2345566678999999999963 4555 5578
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
||||||||++|||||+.+|++||+||||++||..++.++++.|+++++ .|.|+|++|||. ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977 499999999995 678889999999999999
Q ss_pred EEEcCcchHH
Q 008669 274 VYFGETSAAF 283 (557)
Q Consensus 274 v~~G~~~~~~ 283 (557)
++.|+++++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=366.73 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=192.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++||++.|...+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3589999999985322 23569999999999999999999999999999999999998742348999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
+.+.++||+|++ .++|.+|+.+++........ ..+..+..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124699999997 68899999999987654321 23455666788999999999754322 2 2367899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999774 89999999995 6788899999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 988775
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=355.16 Aligned_cols=215 Identities=30% Similarity=0.380 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++||++.+ +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRF-----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEe-----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999986521
Q ss_pred ------------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008669 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 126 ------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
..+.++|++|++.+++.+|+.||+.++.... ......+..+.+.++++.+|+.+..++. ++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hh
Confidence 1346999999999999999999998863211 1223444556788999999998776664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999774 89999999996 67889999999999999
Q ss_pred EEEEcCcchH
Q 008669 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
+++.|+.++.
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987655
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=355.67 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----------DKM--PWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (557)
....++|++|++.+++.+||+||+.++...... ... ...+..+.+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 123489999999999999999999986431100 000 11223456788899999987777654
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999995 6788999999999999
Q ss_pred eEEEEcCcchH
Q 008669 272 KTVYFGETSAA 282 (557)
Q Consensus 272 ~iv~~G~~~~~ 282 (557)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999987765
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=358.83 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=185.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
|.|+++|+++.|.......+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 358899999988421111146999999999999999999999999999999999999886 9999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 008669 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++ .+++ .||+||+.+..... ....++.+++++++++.+||.+ ..++. ++.|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSg 148 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSG 148 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCH
Confidence 124699999996 4555 69999998865432 1234445567888999999973 45554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987789999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 228 ~~~~~~ 233 (280)
T PRK13649 228 KPKDIF 233 (280)
T ss_pred CHHHHh
Confidence 987763
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=359.88 Aligned_cols=217 Identities=28% Similarity=0.451 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.|. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 489999999983 2356999999999999999999999999999999999999886 9999999987531
Q ss_pred --CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHH
Confidence 1256999999973 234569999998865422 2344555567899999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++|||+++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999995 67888999999999999999999887
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 229 ~~ 230 (283)
T PRK13636 229 VF 230 (283)
T ss_pred Hh
Confidence 65
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=358.09 Aligned_cols=215 Identities=30% Similarity=0.420 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcccEEEEccCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.. +...|+.||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHH
Confidence 12469999999753 34458999998864432 2233444566888999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++++..
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987789999999996 6788999999999999999999987754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=352.41 Aligned_cols=219 Identities=28% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE-----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 4689999998 3467999999999999999999999999999999999995 454 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
....++|++|++.+++.+|++||+.+....... . .....+..+++.++++.+||.+ ..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886432210 0 0122334567889999999973 4555432 249999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++... ||++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987889999999996 577777 8999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=347.40 Aligned_cols=209 Identities=26% Similarity=0.366 Sum_probs=176.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 6789999988421 11256999999999999999999999999999999999999886 99999999875311
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 146999999999999999999999865432 1223344566788999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++ ..+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999976 489999999996 455 458999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=347.14 Aligned_cols=206 Identities=31% Similarity=0.432 Sum_probs=178.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSF-----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEE-----CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 4688999988 2357999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... .....+.++++.++++.+|+.+..++. +++||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHH
Confidence 13569999999999999999999988643111 223344556788899999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999999996 678899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=346.46 Aligned_cols=205 Identities=31% Similarity=0.452 Sum_probs=173.6
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----Cc
Q 008669 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SF 127 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~ 127 (557)
+++|+++.+.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..
T Consensus 1 ~~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 1 ELKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred CceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHH
Confidence 36788888731 1257999999999999999999999999999999999999886 9999999987532 12
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 128 GTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 ~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+.++|++|++. .++.+|++||+.+..... .....+.++.+.++++.++|.+..++. ++.||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 146 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIA 146 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHH
Confidence 56899999974 366789999998865432 123334456788899999998766664 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999987799999999995 67888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=398.75 Aligned_cols=246 Identities=30% Similarity=0.437 Sum_probs=202.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|...... .+ .......++|+|+++.|+ +++.+|+|+|+++++
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 47889999999999877643201 00 111223499999999993 257899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|.|+++|+ +|+|.+||.+++. .++.++||+|++.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 9999999998642 24679999999999995 999999987431
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.++++..+. +.+.++ .+++.+||.+|+ ++..||||||||++||||+++||++|+||||||+||+.++.
T Consensus 430 ----at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIA--NLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHH--hCcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 233333222 233333 346678999995 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+.+.++++. +|+|+|+++|++ +.+.+ +|+|++|++|++++.|+.+++..
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999886 578999999997 44544 99999999999999999988765
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=357.01 Aligned_cols=225 Identities=30% Similarity=0.385 Sum_probs=188.6
Q ss_pred cCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 008669 44 FSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (557)
Q Consensus 44 ~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~ 123 (557)
+++..+..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~~~~~~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~ 75 (265)
T PRK10575 4 YTNHSDTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPL 75 (265)
T ss_pred ccCCCCceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEeh
Confidence 333344469999999988 3467999999999999999999999999999999999999886 89999999874
Q ss_pred CC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 124 KL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 124 ~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.. ..+.++|++|++.+++.+|+.||+.+....... .........++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 21 124699999998888899999999875321110 00111233456888999999987667654 56999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999764 89999999996 678899999999999999999
Q ss_pred cCcchH
Q 008669 277 GETSAA 282 (557)
Q Consensus 277 G~~~~~ 282 (557)
|++++.
T Consensus 230 ~~~~~~ 235 (265)
T PRK10575 230 GTPAEL 235 (265)
T ss_pred cCHHHh
Confidence 987664
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=355.69 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58899999988 3467999999999999999999999999999999999999886 9999999987421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|+..+++.+|+.||+.++...... .........++++++++.+||.+..++.+ +.||||||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHH
Confidence 124699999999888889999999885311000 01111233456788999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987799999999996 678899999999999999999987665
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=349.08 Aligned_cols=209 Identities=33% Similarity=0.462 Sum_probs=174.1
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEE
Q 008669 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv 133 (557)
++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSY-----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEE-----CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 57888888 2356999999999999999999999999999999999999886 999999998653233569999
Q ss_pred ccCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 134 TQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 134 ~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++.++ ..+||+||+.+....... .....++.+++++++++.+++.+..++.+ ..||||||||++|||||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 9998763 347999999886432110 00112234467889999999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 6788999999999876 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=354.53 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 12 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 12 QIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 59999999988 34569999999999999999999999999999999999987510 148999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++ +|++||+.+..... ..+..+.++++.++++.+++. +..++ .+..|||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSg 157 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLSG 157 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCH
Confidence 1346999999998888 89999999875432 223344456688899999984 33344 4457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 79999999995 6788999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 88765
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=354.12 Aligned_cols=216 Identities=32% Similarity=0.444 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 37899999988 3467999999999999999999999999999999999999886 9999999986432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888899999998864321 1122333456788999999987777654 5799999999999
Q ss_pred HHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 206 a~aL~------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5789999999996 67888999999999999999998
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 76653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=364.76 Aligned_cols=227 Identities=23% Similarity=0.284 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-~~~G~I~~~G~~~~~---- 125 (557)
.|+++||++.|..+. +...+|+||||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999984321 12469999999999999999999999999999999999987421 248999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++||+|++ .++|.+|+.+++........ ....++.++++.++++.+||.+..+. -+.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHH
Confidence 113699999997 57899999999876644321 23455666789999999999752111 12256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||. ..+.+++|+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999987 599999999995 6788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=359.20 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=185.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 68899999883 2356999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .+...|+.||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHH
Confidence 1246999999975 356679999998875432 2344555667889999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++ ..||++++|++|++++.|++++..
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987899999999996 466 569999999999999999987754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=347.08 Aligned_cols=214 Identities=31% Similarity=0.412 Sum_probs=176.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|... .....+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 6789999988311 00126999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 008669 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 124699999998 4677899999998865432111 11222222 35788999995 455554 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999996 5778899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=346.69 Aligned_cols=209 Identities=29% Similarity=0.443 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-cccE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-~~~~ 130 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRF-----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 4688999987 3467999999999999999999999999999999999999886 99999999875322 2569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+|++||+.+....+. .. ..++.++++.+|+.+..++.+ ..||||||||++|||+++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988754321 11 245778899999988777644 569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++.+
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999987899999999996 57889999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=351.93 Aligned_cols=220 Identities=28% Similarity=0.377 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---C
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---L 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~---~ 125 (557)
.|+++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|++.. .
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 48999999998 3456999999999999999999999999999999999998762 124899999998753 1
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.+....+.. ....++..+++.++++.+++.+ ..++ .+..|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 152 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLND-----YPSNLSG 152 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhcc-----ChhhCCH
Confidence 124699999999999999999999987543210 1123344456788999999853 2333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 69999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 231 ~~~~~~ 236 (253)
T PRK14267 231 PTRKVF 236 (253)
T ss_pred CHHHHH
Confidence 877653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=369.68 Aligned_cols=204 Identities=27% Similarity=0.390 Sum_probs=180.9
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CcccEEEEc
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKL---------SFGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~----~~~---------~~~~~~yv~ 134 (557)
...+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++ ... +.+.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999999999999999999986 9999999962 211 124699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
|++.+++.+||+||+.++.... ..++.+.++++.++++.+||.+..++.+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 2345566678899999999988777754 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++||+++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999774 89999999995 6889999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=355.81 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999998831 2356999999999999999999999999999999999999986 9999999987532
Q ss_pred CcccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 3666789999998875432 2334555677899999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++. .||++++|++|++++.|++++..
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 4565 59999999999999999987764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=354.46 Aligned_cols=220 Identities=29% Similarity=0.429 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 48999999988 34679999999999999999999999999999999999998753246999999986421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++.+++.+||+||+.+......+. .....+.+.++.++++.+||.+..++.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1245899999999999999999998764211000 0112234567889999999987777654 569
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 489999999996 5788999999999999999
Q ss_pred EEcCcch
Q 008669 275 YFGETSA 281 (557)
Q Consensus 275 ~~G~~~~ 281 (557)
+.|++++
T Consensus 233 ~~g~~~~ 239 (262)
T PRK09984 233 YDGSSQQ 239 (262)
T ss_pred EeCCHHH
Confidence 9998765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=349.21 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYY-----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEe-----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... .. ..+..+++++.++ +.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHH
Confidence 12469999999999999999999988754321 11 1233566777776 55555554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ +++.++||++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999995 678889999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=349.94 Aligned_cols=220 Identities=29% Similarity=0.389 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 48899999988 3457999999999999999999999999999999999998741 1248999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++.+++.+||+||+.+....... .....+..+.+.++++.+||.+ ..++ .+.+|||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~ 151 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDA-----PAGKLSGGQ 151 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----CcccCCHHH
Confidence 135699999999888899999999987543211 1123444567889999999864 2344 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999999864 79999999996 578889999999999999999988
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=354.41 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 68999999883 2356999999999999999999999999999999999999886 8999999987531
Q ss_pred -CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++. .+...||.||+.+..... .....+..+++.++++.+||.+..++.+ +.||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1246999999963 333469999998764321 2234455567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999995 6788899999999999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=343.48 Aligned_cols=207 Identities=29% Similarity=0.412 Sum_probs=176.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. ++. .|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46889999882 232 3999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+...... .. ..+.++++.++++.+||.+..++.+ .+||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 1233456889999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999976 489999999995 6788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=350.37 Aligned_cols=221 Identities=26% Similarity=0.343 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 48999999998 24569999999999999999999999999999999999864 111248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||+||+.+....+. .......+++++++++.+++.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13569999999988884 99999998754321 1123334567888999999854221111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 67889999999999999999998765
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 4
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=356.23 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+. +.+.+|+|+||++++||+++|+|+||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 378999999883 2345999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .+...||.||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHH
Confidence 1246899999973 333579999998765422 2334455567889999999987777754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 6788999999999999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=352.45 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6889999988 3467999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+++.+..++.+ ..||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 24689999998878889999999885321000 01112233456888999999987777654 5699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999996 678899999999999999999987664
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=350.84 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 58999999998 34569999999999999999999999999999999999987621 138999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++ +||+||+.+...... .....+.++++.+.++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112334456788889998873 33444 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||+++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999996 5788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 887653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=345.99 Aligned_cols=214 Identities=29% Similarity=0.437 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFY-----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 4689999988 3467999999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999998875433 1223344567788999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999874 89999999996 678899999999999999999876654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=353.15 Aligned_cols=222 Identities=26% Similarity=0.335 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008669 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++|+++.+.... .+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 378999999984210 11367999999999999999999999999999999999999886 9999999987531
Q ss_pred -------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008669 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++ .+++.+||+||+.+...... .....+..+++.++++.+||. +..++. +++|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhC
Confidence 124699999996 46778999999987643211 122334456788999999996 555654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +.+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999874 89999999995 6788899999999999999
Q ss_pred EEcCcchHH
Q 008669 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|++++..
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=406.52 Aligned_cols=251 Identities=29% Similarity=0.434 Sum_probs=206.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|.+|+.+|+++.+..|..+... .+ .+ ...+....++|+|++++|+.+ ++..||+|+|+.|++
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~-~~----------~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~ 378 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYS-KG----------GR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIPS 378 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCccc-cc----------CC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeCC
Confidence 57899999999999988876522 10 01 122344569999999999754 356799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.+||+|||||||||++++|.++++|+ +|+|.+||.+++. .+.++|.|.|+|.+|.. |++||+.|+..-
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d- 453 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD- 453 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc-
Confidence 9999999999999999999999999996 9999999988542 24679999999998876 999999987421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.+.++..+ .+.+.+ ..|.+.+||.+|+.. -+||||||||++|||||++||+|||||||||+||+.++.
T Consensus 454 ----at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g-~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~ 526 (1228)
T KOG0055|consen 454 ----ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERG-VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER 526 (1228)
T ss_pred ----ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCC-CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence 22322222 222223 356788999999844 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+.+.|.+.. +|+|.|+++|+. +.+.+ +|+|++|++|++++.|+.+|+..
T Consensus 527 ~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 527 VVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 9999998874 589999999996 45655 99999999999999999999874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=348.43 Aligned_cols=223 Identities=26% Similarity=0.362 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 47899999998 34679999999999999999999999999999999999975312248999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++ .|++||+.++...+.. .......++++.++++.++|.+...... +..++.||||||||++|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 5999999987543211 0012334456788999999953221111 12456799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||++ +++.+++|++++|++|++++.|+.++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 89999999995 6788999999999999999999877653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=344.23 Aligned_cols=211 Identities=30% Similarity=0.363 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++|+++.+.... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 489999999884210 1135999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++.+++.+|+.||+.+....+ .....+.++++.++++.++|.+..++.+ ..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 146999999999999999999998865332 1233445567889999999987766644 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +.+ +.+|++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 89999999996 455 5599999999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=348.75 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58999999988 3457999999999999999999999999999999999999886 9999999987431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++ .||+||+.+....+ . ....++.++++.++|. +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1134577899999996 44555 44679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999977 489999999996 678889999999999999999988765
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=346.43 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|.++|. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999883 457999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1223344567789999999987777644 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++..
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999775 89999999996 6788999999999999999999877653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=401.25 Aligned_cols=242 Identities=27% Similarity=0.341 Sum_probs=197.4
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..+.+|+.++++.+++.+. +. ... ......++++|++++|+. .++.+|+|+|+++++
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~----~~----------~~~----~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE----AK----------TDP----GKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc----Cc----------CCC----CCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 467889999999986554221 00 000 011235999999999942 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||++.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.+. +.+.+.++..|+ ++..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234455555554 4567899987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.++.+.|+++ ++|+|+++|++ +..+.+|+|++|++|++++.|+.+++.+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 58999999997 3467799999999999999999887653
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=401.67 Aligned_cols=222 Identities=27% Similarity=0.388 Sum_probs=196.6
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...|+++||++.+.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLD 999 (2272)
T ss_pred CceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHH
Confidence 346999999999831 2467999999999999999999999999999999999999986 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.+||+||++.+++.+||+||+.+.++++ +.+.++.+++++++++.+||.+..|+.+ ++|||||||||+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLs 1071 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLS 1071 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999999999999999987654 2334455677899999999998887755 569999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++ +++..++|||++|++|+++..|+++++++
T Consensus 1072 LArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999995 599999999995 68889999999999999999999998876
Q ss_pred HH
Q 008669 285 FF 286 (557)
Q Consensus 285 ~f 286 (557)
.|
T Consensus 1150 ~~ 1151 (2272)
T TIGR01257 1150 CF 1151 (2272)
T ss_pred hc
Confidence 55
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=361.47 Aligned_cols=229 Identities=19% Similarity=0.231 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~~---- 125 (557)
.|+++||++.|..++ +.+.+|+||||+|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999985322 2356999999999999999999999999999999999998642 1248999999987531
Q ss_pred -----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008669 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
..+.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+..+ ..+.++++|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1246999999975 6788999999976432111000 112344567889999999975321 112256789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.+++|+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999874 99999999995 6888999999999999999
Q ss_pred EEcCcchHH
Q 008669 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|+++++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999987664
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=347.93 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 489999999983 4579999999999999999999999999999999999985 321248999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++.+|++||+.+..... ......+.++++.++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998764432 111233445668889999998642211111 145679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 58999999995 67889999999999999999998776
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 5
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=352.32 Aligned_cols=220 Identities=29% Similarity=0.391 Sum_probs=186.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHH
Confidence 469999999998 3467999999999999999999999999999999999999886 8999999987432
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+|++||+.+......+. ....+...++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHHH
Confidence 1246999999999998899999998752111000 001123345678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 678999999999999999999988765
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 232 ~ 232 (265)
T PRK10253 232 V 232 (265)
T ss_pred h
Confidence 4
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=352.88 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=185.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHH
Confidence 35999999998831 2357999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++. .++.+||+||+.+..... .....+.++++.++++.+||.+..++.+ +.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHH
Confidence 1356999999974 577789999998865422 2234445567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ ++|||++||++ +++ ..||++++|++|+++..|++++.
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999876 59999999997 455 47999999999999999987765
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 230 ~ 230 (271)
T PRK13632 230 L 230 (271)
T ss_pred h
Confidence 3
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=350.39 Aligned_cols=217 Identities=23% Similarity=0.331 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999998831 1245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++. +++..|+++|+.+..... .....+..+++.++++.+++.+..++. ++.||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 677789999998875432 223444456788899999998777764 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.. +|++++|++|++++.|++++..
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 89999999997 45654 9999999999999999987764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=351.13 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|+++|. .+.+|+|+++|++...
T Consensus 19 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 19 KMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred eEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 69999999998 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..+++.++++.+||.+...... +..++.|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13468999999988885 999999987543211 0123344566888999999964211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +.+.++||++++|++|+++..|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999995 67889999999999999999998766
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 249 ~ 249 (267)
T PRK14235 249 M 249 (267)
T ss_pred H
Confidence 5
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=366.11 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=180.2
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 008669 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---------~ 126 (557)
||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 4 ~l~~~~-----~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRL-----GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEE-----CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 778777 2333 4 999999999999999999999999999999999886 9999999987421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ ++|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 12334567889999999988777754 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ +++..++|++++|++|+++..|+++++.
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 6788999999999999999999987764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=339.70 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. .+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999882 2568999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++|||+
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987543211 1 1122345678899999998776664 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++ .++.+++|++++|++|+++..|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999995 67788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=349.24 Aligned_cols=225 Identities=25% Similarity=0.366 Sum_probs=184.4
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~ 125 (557)
....++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|++...
T Consensus 10 ~~~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 10 APSKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CCceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 34469999999998 23569999999999999999999999999999999999986 211248999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++ .||+||+.+...... ..+..+..++++++++.+++.+...... +..+..||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 160 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGG 160 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHH
Confidence 1356999999998887 799999988754321 1234444567889999999853211111 1245679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||++ .++.+++|++++|++|+++..|+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999996 478999999996 57888999999999999999998
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 239 ~~~~~ 243 (260)
T PRK10744 239 TDTIF 243 (260)
T ss_pred HHHHH
Confidence 77653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=346.71 Aligned_cols=221 Identities=24% Similarity=0.334 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCCC--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~---~~~~~~~G~I~~~G~~~~~-- 125 (557)
.++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 58899999988 3467999999999999999999999999999999999973 331 138999999987532
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++.++|++|++.+++ .|++||+.+....+. ........+.++++++.+||.+...+... ..+..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~ 152 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHH
Confidence 1246999999998887 599999988754321 11123344667889999998643221111 24567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 479999999996 5788999999999999999999887
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14245 231 KIF 233 (250)
T ss_pred HHh
Confidence 764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=354.18 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=186.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999998831 12469999999999999999999999999999999999998852113999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .++..||+||+.+..... ..+.++..+++.++++.+||.+..++. ++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246999999974 567789999998864332 234555567789999999998777664 4679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++ ..||++++|++|++++.|++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 89999999996 455 579999999999999999987764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=323.07 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=194.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
+...+++.+|.. ..+.+|+|+|++|.+||.++++||||||||||||+++|+.+|. .|+|.+||+++.-....-|
T Consensus 4 l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaerg 77 (259)
T COG4525 4 LNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAERG 77 (259)
T ss_pred eehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccce
Confidence 556778888742 2355999999999999999999999999999999999999996 8999999998764445569
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
.|+|++.++|.+||.||+.|+.+++ ++.+.++++++.+.+..+||++..++++ -+||||||||+.|||||+.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhc
Confidence 9999999999999999999998887 6788999999999999999998877755 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcchHHHH
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF 285 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~~~~ 285 (557)
+|++|+||||+++||.-+++++-++|-++.+ .|+.++++||+. +|+.-+++++++|+ .|+++..=+++=...|
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999999999999999999999988866 799999999995 78888999999998 6899988777644444
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=348.94 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~--~~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++| ....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 58999999988 345799999999999999999999999999999999999863 21248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+...... +..+++|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13469999999988886 99999988653321 1123444566788899999854211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|+++.+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 67889999999999999999999876
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 53
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=372.33 Aligned_cols=227 Identities=31% Similarity=0.400 Sum_probs=199.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~----- 124 (557)
.|+++||++.|... ++...+++||||++++||++||+|+|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 58999999999765 33357999999999999999999999999999999999999876 456899999998531
Q ss_pred ----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.+.+.++||||++ .+.|-+||.+-+.-....+.. .+.++.++++.++|+.+||++.... +.++++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1236799999996 467778999999877665532 3477888999999999999886554 4589999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+ .-+.++||||++|++|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 699999999996 7899999999999999999999
Q ss_pred CcchHHH
Q 008669 278 ETSAAFE 284 (557)
Q Consensus 278 ~~~~~~~ 284 (557)
+++++..
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9999875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=343.77 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. ++ ..|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 68999999983 22 23999999999999999999999999999999999886 8999999987532 125
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++.+ +.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987532110 11 2234566889999999987777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++.+|+++||||||+|||+.++..+.+.|+++++ .|+|+|++||++ .++.+++|++++|++|++++.|+.++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999976 489999999996 6788999999999999999999876654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=349.32 Aligned_cols=223 Identities=26% Similarity=0.335 Sum_probs=185.1
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~- 125 (557)
...++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3469999999998 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008669 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
..+.++|++|++.+++ .||+||+.++.... ......+.++++.++++.++|.+..+.... ..++.|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-KSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCcccCCHHH
Confidence 1346999999998887 59999999875422 112233445678889999998643222222 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999996 479999999996 578899999999999999999998
Q ss_pred chH
Q 008669 280 SAA 282 (557)
Q Consensus 280 ~~~ 282 (557)
++.
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 765
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=364.91 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=180.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|++ ||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~-----~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQL-----GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEe-----CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 556 888887 2232 3 899999999999999999999999999999999886 9999999986421
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||+||+.++... ...++++++++.+||.+..++. +++||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 135799999999999999999999886321 1235688999999998877764 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ +++..+||++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 68899999999999999999999887
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 74
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=343.19 Aligned_cols=213 Identities=29% Similarity=0.458 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.+. .+ +|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46889999872 23 899999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++.+ +.||||||||++||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998875332 2233445566788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|++++.|+.++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999764 89999999996 678889999999999999999987654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=354.67 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+..+....+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999998321000135999999999999999999999999999999999999886 8999999986421
Q ss_pred -----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++. +++ .||+||+.+..... .....+..++++++++.++|. +..++. ++.|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 1246999999973 444 59999999865322 123444456678899999994 555654 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999996 578899999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9887653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=347.85 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. +.+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 48899999998 34579999999999999999999999999999999999986421 248999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.+....+. .....+.+++++++++.+|+.+ ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 12469999999999999999999988754321 1123444567888999999842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee------CC
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G 271 (557)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999995 67889999999997 79
Q ss_pred eEEEEcCcchHH
Q 008669 272 KTVYFGETSAAF 283 (557)
Q Consensus 272 ~iv~~G~~~~~~ 283 (557)
++++.|++++..
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=345.55 Aligned_cols=219 Identities=24% Similarity=0.351 Sum_probs=183.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 358899999988 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++ +|++||+.+...... .....+..+++.++++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 149 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKLS 149 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCC
Confidence 1356999999998887 899999998754321 1123344566788999998853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 678899999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|+++++.
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 9987753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=346.08 Aligned_cols=222 Identities=28% Similarity=0.387 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYY-----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 48999999988 34579999999999999999999999999999999999853 421238999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ +||+||+.+..... . .......++++.++++.+++.+...+.. +..++.|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1346999999998887 79999999875432 1 1122334466788899998753211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999996 67889999999999999999998876
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 53
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=381.34 Aligned_cols=220 Identities=23% Similarity=0.327 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999998761 1389999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
++.++||+|++.+++.+||+||+.+....+.......++..++++++++.+|+.+..++.+ ++||||||||++
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 2459999999999999999999988754321111223444567889999999987777755 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999987899999999995 678899999999999999999998765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=327.92 Aligned_cols=218 Identities=30% Similarity=0.437 Sum_probs=187.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
|+.+||||++ .++.+|++||++++|||+++|+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHH
Confidence 6889999998 5688999999999999999999999999999999999999986 99999999975432
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.++-+.+||+..+-...||+|.+.++..-... .-...+..+.+++.|...++.+.+...+ ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHH
Confidence 24568999998875556999999998532211 1122244556788999999988776643 56999999999999
Q ss_pred HHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 207 LEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 207 ~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|.|+. ++++||||||||+||...+..++++.++++++|..|+++.||. +....+||||++|++||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 4569999999999999999999999999999999999999995 6789999999999999999999999
Q ss_pred hHHH
Q 008669 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++..
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=370.82 Aligned_cols=244 Identities=27% Similarity=0.372 Sum_probs=202.6
Q ss_pred hhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCC
Q 008669 3 DSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPG 82 (557)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~G 82 (557)
...|++|+.++.+++|+..- + ..++..... .++++|++++|+. +..++|+|+|+++++|
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~---------------~--~~~~~~~~~-~l~~~~vsF~y~~---~~~~~L~~~~l~l~~G 364 (573)
T COG4987 306 VIASARRLNDILDQKPEVTF---------------P--DEQTATTGQ-ALELRNVSFTYPG---QQTKALKNFNLTLAQG 364 (573)
T ss_pred HHHHHHHHhhhccCCcccCC---------------C--ccccCCccc-eeeeccceeecCC---CccchhhccceeecCC
Confidence 46789999999988887542 0 011111122 6999999999953 3457999999999999
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhccC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (557)
|.+||+|+||||||||+++|.|.++|+ +|+|.+||.++... ++.+++++|..++|.+ |+|+||..+..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~--- 437 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP--- 437 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC---
Confidence 999999999999999999999999997 99999999875422 3468999999999988 99999988632
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 158 PDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
+ .+. +.+.++++.+||+ +..||.+|+ .++.||||||||++|||+|++|.++++|||||.|||+.++
T Consensus 438 -~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 438 -D-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred -C-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhH
Confidence 1 223 3356677777774 356778887 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.++++.|.+-++ |+|+|++||+... .+.||||++|++|+++++|...++..
T Consensus 511 ~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 511 RQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999988654 8999999999753 67899999999999999999888754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=387.52 Aligned_cols=242 Identities=21% Similarity=0.271 Sum_probs=199.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|++|+.++++.++.... . . +.. .....++++|+++.|+ .++.+|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~-~----------~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N-D----------DRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C-C----------ccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 467899999999975543211 0 0 000 0122599999999984 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .+++++||||++.+|+. |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999996 8999999997542 24679999999999998 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.+. +++.++++.+|+ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335566666664 4567899987 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++.+ ++|+|++||++ .....||+|++|++|+++..|+.+++.+
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999864 69999999997 3467799999999999999999988753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=388.54 Aligned_cols=246 Identities=26% Similarity=0.374 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+. +.. .. .+..-.++++|+++.|+. .++.+|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~----~~~---------~~-----~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE----GKR---------VI-----ERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC----CCc---------CC-----CCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 456788999999876544221 000 00 011225999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 441 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR--- 441 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC---
Confidence 9999999999999999999999999996 8999999998542 24679999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
++..+.+ ++.+.++..| +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 442 -~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 442 -TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1112222 3444455444 45667999987 457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++ ...+.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 516 ERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999885 469999999997 3577899999999999999999887653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=343.19 Aligned_cols=200 Identities=33% Similarity=0.478 Sum_probs=172.4
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999999886 999999998764322335899999999999999999988
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
......+ .....+.++++.++++.+||.+..++.+ ++||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 2234445567889999999987777654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 232 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999764 89999999996 67889999999999999998886554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=344.04 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~--~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999982 45799999999999999999999999999999999998753 11248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ +|++||+.+....+. ..+..+.++.+.++++.+++.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346999999998887 899999998754321 1123344567788888888753211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999995 67889999999999999999998776
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 5
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=349.40 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008669 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++||++.|..+. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 489999999984211 01356999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008669 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++. +++.+|+.|++.+...... .....+..+.+.++++.+||. +..++. +..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 1246999999974 6788899999988654321 123344456788999999994 455553 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999774 89999999996 6788899999999999999998
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 876653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=379.88 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.++...... ......+.++++.++++.+||.+..++.+ ..|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHH
Confidence 124699999999999999999999986432210 11223444567889999999988777755 46999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|+++++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999987899999999996 678899999999999999999998765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=390.47 Aligned_cols=246 Identities=28% Similarity=0.404 Sum_probs=200.8
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|.... . .+ ... ......++++|+++.|+. +++.+|+|+|+++++
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~-~-~~-----------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTF-P-TT-----------STA----AADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-C-cc-----------cCC----CCCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 568899999999987765321 0 00 000 011235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999986 9999999997542 23579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..+ ++.+.+.++..++. +..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 112 23456677777764 457899987 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
..+.+.|+++. +++|+|+++|+++ . ...+|+|++|++|++++.|+.+++.+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999985 5899999999974 4 45699999999999999999877653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=345.03 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.-+++|+++.+ +.+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 34688999988 34679999999999999999999999999999999999976 211248999999986421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+....+ .......+.++.+.++++.+||.+...+.+. ..+.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHH
Confidence 13569999999988886 9999998874332 1111223344567889999999653222221 245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 489999999996 57888999999999999999998765
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 5
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=351.19 Aligned_cols=219 Identities=26% Similarity=0.402 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCc-ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 51 RLTWKDLTVMVTLSNG-ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
.++++|++++|....+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 4899999999842110 1356999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 --SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 --~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++. ++ ..||.||+.|..... ..+..+.+++++++++.+||.+..++.+ +.|||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~q 151 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQ 151 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHH
Confidence 1356999999974 44 469999999875432 2334555677899999999988777754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.. ||++++|++|++++.|+++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 499999999996 45655 9999999999999999988
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=343.80 Aligned_cols=198 Identities=29% Similarity=0.429 Sum_probs=171.4
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CcccEEEEc-cCCCCCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIGT 142 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~-Q~~~l~~~ 142 (557)
.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 457999999999999999999999999999999999999886 9999999986421 235689998 55678888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 008669 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 222 (557)
+|++||+.+..... .....+..++++++++.+|+.+..++.+ ..||||||||++||++|+.+|+++||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875432 2233444566788999999988877755 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 89999999996 5788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=344.39 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 48899999988 3467999999999999999999999999999999999998741 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++ +|++||+.+...... .......++.+++.++.+++.+..+... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHH
Confidence 1356999999998887 799999998754321 1123334456788899999864211111 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999965 78999999996 57889999999999999999998876
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=396.40 Aligned_cols=248 Identities=26% Similarity=0.390 Sum_probs=200.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.+++... +..+ . . .......++++|++++|+. ..+.+|+|+|+++++
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~----~~~~---------~--~-~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE----GTRF---------L--H-RPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------C--C-CCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 467899999999987664221 0000 0 0 0011235999999999942 245699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999996 9999999998542 24679999999999987 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.+ .+.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 12232 2344444444 45677999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
+..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+.
T Consensus 637 e~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 637 EERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999986 4799999999973 4678999999999999999998887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=398.57 Aligned_cols=251 Identities=25% Similarity=0.309 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.++++.++.... . ..+ .. +... .........++++|++++|+. .++.+|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~---~~~--~~---~~~~-~~~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-E---EEE--AP---AAGS-EPSPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-c---ccc--cc---cccc-ccCCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 467899999999987655321 0 000 00 0000 000111235999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--- 577 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--- 577 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC---
Confidence 9999999999999999999999999996 9999999998532 24679999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..++ ++..||.+|+ .+.+||||||||++|||||+++|++||||||||+||+.+
T Consensus 578 -~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 578 -P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1 12222 24444555444 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|++ .++|+|++||+++ ....||+|++|++|++++.|+.+++.+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4799999999963 456799999999999999999888754
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=398.18 Aligned_cols=245 Identities=30% Similarity=0.407 Sum_probs=196.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.+|..+... . ..+ ......++++|+++.|+.. +++.+|+|+|++++|
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~---~----------~~~----~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG---T----------LAP----LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC---C----------CCC----CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57889999999998766533200 0 000 0112359999999998521 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||++.+. .+++++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998542 23679999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+. +.+.+.++..++ ++..||.+|+ ...+||||||||++|||||+++|++||||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1122 234455555554 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 236899999999963 467799999999999999999888754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=345.30 Aligned_cols=216 Identities=27% Similarity=0.343 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-----~~~ 125 (557)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 489999999883 357999999999999999999999999999999999999886 9999999986 421
Q ss_pred ---------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 008669 126 ---------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (557)
..+.++|++|++ .+++.+|++||+.+...... .....+.+..+.++++.+++.+ ..++ .+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----LPT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCc
Confidence 123599999997 36778899999976532211 1122334566788999999964 4555 345
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +.+.+++|++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 89999999995 67888999999999999
Q ss_pred EEEEcCcchH
Q 008669 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999987765
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=346.25 Aligned_cols=219 Identities=26% Similarity=0.350 Sum_probs=180.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 358999999988 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+ ..++ .+..||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 166 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALSLS 166 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----CcccCC
Confidence 13469999999988885 99999988643221 1112233455777888888853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|++++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 68999999996 578899999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 245 ~~~~~~~ 251 (268)
T PRK14248 245 DQTEQIF 251 (268)
T ss_pred CCHHHHH
Confidence 9877653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=342.55 Aligned_cols=220 Identities=26% Similarity=0.363 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
+.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 358899999998 34679999999999999999999999999999999999987631 137999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCC
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LS 196 (557)
.++.++|++|++.+++.+|+.||+.+...... ....++..+.+.+.++.+++. +..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 13469999999999999999999987654321 112233445667777777764 23344 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 69999999996 678889999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9887653
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=398.10 Aligned_cols=246 Identities=23% Similarity=0.289 Sum_probs=198.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+.+|.+|+.++++.++..+.. ... .. .......++++|+++.|+ .++.+|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~----~~~-------~~-----~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINK----KKR-------TE-----LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCccccc----ccc-------cC-----CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 4678999999999866553220 000 00 001122599999999984 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|+|+++|+ +|+|++||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-- 573 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-- 573 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999997532 24679999999999987 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..+ +++..||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 574 -~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 574 -E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1 12222 2334444444 34567999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999973 467899999999999999999887654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=348.03 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=180.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 469999999998 34679999999999999999999999999999999999976310 148999999987421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++.++|++|++.+++. ||+||+.+.+..+ ... .+.++++.++++.+++........ +..+..||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~ 160 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQ 160 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHH
Confidence 12469999999988885 9999999876432 111 223455677888888743211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC----------
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG---------- 270 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~---------- 270 (557)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccc
Confidence 999999999999999999999999999999999999999964 79999999996 688999999999996
Q ss_pred -CeEEEEcCcchHH
Q 008669 271 -GKTVYFGETSAAF 283 (557)
Q Consensus 271 -G~iv~~G~~~~~~ 283 (557)
|++++.|+++++.
T Consensus 239 ~g~~~~~~~~~~~~ 252 (269)
T PRK14259 239 VGYLVEFNETKKIF 252 (269)
T ss_pred cceEEEeCCHHHHH
Confidence 6789999887764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=333.86 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.+.|+|+++.|+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999997542 35679999999999999999999999999999999999998321249999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++.+||+||+.+..... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998753210 222 3457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+||+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.++||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999775 6787777776556888999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=336.41 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=172.7
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 008669 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---------~ 126 (557)
||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 5 ~l~~~~-----~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRL-----PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEec-----CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 888888 33444 99999999 999999999999999999999999886 9999999986421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++. ++.||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 346999999999999999999998864321 2233446688899999998766664 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999995 6788999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=342.51 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 48899999988 3467999999999999999999999999999999999998752 0238999999987521
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.++|++|++.+++ .||.||+.+..... ........++++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1346999999999887 79999998874332 11122334466778888888754221111 12456799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 678999999999999999999987654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=378.38 Aligned_cols=218 Identities=23% Similarity=0.353 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++....
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.+.++||+|++.+++.+||+||+.++..... ... ....+.++++.++++.+||.+..++.+ ++||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 2459999999999999999999987532110 001 123344567889999999988777755 46999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999995 6788999999999999999999987
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 75
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=342.05 Aligned_cols=222 Identities=24% Similarity=0.357 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 48899999988 34569999999999999999999999999999999999988741 126999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+....+.. ...++..+.+++.++.+++.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998885 999999987543211 112233455777888888753221111 2255679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 589999999995 67889999999999999999998776
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 233 ~~ 234 (251)
T PRK14249 233 IF 234 (251)
T ss_pred HH
Confidence 53
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=342.23 Aligned_cols=222 Identities=27% Similarity=0.344 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999988 34679999999999999999999999999999999999875321 138999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13469999999988885 99999998755431 1122334456788888888854221111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67888999999999999999998876
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 235 ~~ 236 (253)
T PRK14261 235 IF 236 (253)
T ss_pred HH
Confidence 53
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=317.09 Aligned_cols=211 Identities=31% Similarity=0.412 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+.+++++.+.... ....||++|++.+++||.++|+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 477888888774332 3467999999999999999999999999999999999999986 999999998742
Q ss_pred ---CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.+++|+|+|...+.|+||..||+...+.++-. +..+......++|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 1346799999999999999999999998877632 334455678899999999887766 56789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
||+||||++..|++||.||||.+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|||.+-|..|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999876 699999999997 4678899999999999874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=347.01 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=182.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCC-
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-----~~~G~I~~~G~~~~~- 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999988 34679999999999999999999999999999999999987730 127999999987532
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 124589999998766668999999875321100 0111123345678899999998766654 457999999
Q ss_pred HHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 201 qRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999875 89999999996 678889999999999
Q ss_pred CeEEEEcCcchH
Q 008669 271 GKTVYFGETSAA 282 (557)
Q Consensus 271 G~iv~~G~~~~~ 282 (557)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999987765
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=345.34 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 368999999998 3467999999999999999999999999999999999998751 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ .|++||+.+..... ...+..+.+..+.+.++.+++.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999998864322 112344445567788999998753322221 245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67889999999999999999999876
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 63
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=340.07 Aligned_cols=223 Identities=25% Similarity=0.348 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 358999999988 34679999999999999999999999999999999999865 321238999999986521
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++ .|++||+.+....+.. ......++.+.+.++.+++........ +..+..||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHH
Confidence 1356999999998888 6999999987543211 112222345677788887642211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++.+++|++++|++|+++..|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 58999999996 6788999999999999999999877
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 233 ~~~ 235 (252)
T PRK14255 233 QMF 235 (252)
T ss_pred HHh
Confidence 653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=366.88 Aligned_cols=226 Identities=28% Similarity=0.344 Sum_probs=194.4
Q ss_pred ceEEEEEeEEEEEEccC------cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
...++++||++.|..++ .+...+++||||++.+||++||+|+||||||||.|+|+|+.+|+ +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 34588999999997532 23457899999999999999999999999999999999999996 9999999976
Q ss_pred CC-------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008669 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 123 ~~-------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
.. ..++++-+|+||+ .+.|.+||++++.-....... ....+.++++.++++.+||... +.+.+++
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1234678888886 689999999999987665432 2356677889999999999852 2334788
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+||||||||++|||||+.+|+++++|||||.||+..+.+++++|+++.+ .|.|.|++|||. ..+..+||||.+|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 9999999999999999999999999999999999999999999999987 499999999995 78999999999999999
Q ss_pred EEEEcCcchHHH
Q 008669 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
+|+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998877653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=395.43 Aligned_cols=251 Identities=29% Similarity=0.389 Sum_probs=208.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|+.|+.+++++++.+|..+..-.. .... ......++++|+++.|+.+ ++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~-----------~~~~----~~~~G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTS-----------GGKL----PNVKGDIEFRNVSFAYPTR--PDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCC-----------CCcc----ccceeEEEEeeeEeeCCCC--CCchhhcCCcEEecC
Confidence 4788999999999999965531100 0001 1123459999999999753 567899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.+||+|||||||||.+.+|-..++|+ +|.|.+||++++. .++++|.|.|+|.||.. |++|||.|+.
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~--- 1088 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS--- 1088 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC---
Confidence 9999999999999999999999999996 9999999998643 25789999999999987 9999999982
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
. ..+.++..+ .+.+.+ .+|++.+||.||+ +..+||||||||++||||+++||+||||||.||+||+++.+
T Consensus 1089 -~-~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1089 -E-EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred -C-CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 1 134444322 222222 4789999999998 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+-+.|.+.. .|+|.|++.|+++ ..+.||.|.|+++|+++++|+-+++..
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999874 6899999999975 468899999999999999999888765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=344.13 Aligned_cols=222 Identities=20% Similarity=0.331 Sum_probs=179.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 23 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWY-----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 369999999988 34569999999999999999999999999999999999986 211248999999987521
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++. ||+||+.++...+ ........++.+.+.++.+++.+...... +..+..||||||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHH
Confidence 13569999999988875 9999999875432 11122233455677777775432111111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 79999999995 6788999999999999999999877
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 252 ~~ 253 (271)
T PRK14238 252 KI 253 (271)
T ss_pred HH
Confidence 65
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=344.49 Aligned_cols=221 Identities=26% Similarity=0.346 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFY-----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEE-----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 59999999998 2457999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999988886 99999988754321 1122333456788888888864211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++.+.||++++|++|++++.|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999999996 67889999999999999999998765
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 4
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=333.27 Aligned_cols=197 Identities=32% Similarity=0.437 Sum_probs=169.4
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 008669 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---~----- 125 (557)
++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.. .
T Consensus 1 i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKF-----GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEE-----CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 36788887 3457999999999999999999999999999999999999886 999999998732 1
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++.+ ++||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1246999999999999999999999875432 2233445567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ .. .+.||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 99999999999999999999999999999999999987799999999996 33 5789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=342.02 Aligned_cols=223 Identities=26% Similarity=0.391 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 58999999998 23569999999999999999999999999999999999988631 237999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999988888 799999988653321 1123344566788999999854222111 2245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC-----CeEEE
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~ 275 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++.++||++++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 688999999999999 99999
Q ss_pred EcCcchHH
Q 008669 276 FGETSAAF 283 (557)
Q Consensus 276 ~G~~~~~~ 283 (557)
.|+++++.
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=346.09 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 4899999999841 11245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566789999998864322 223445556788999999998777664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++. .+|++++|++|+++..|++++..
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 4565 69999999999999999987764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=335.50 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 6889999987321 11267999999999999999999999999999999999999886 9999999987531
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998754321 123445566789999999998777664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++ + +.++||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999976 589999999996 3 5689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=375.38 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+.++|++|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 23599999999999999999999875321 1234466889999999987777755 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999999999999988899999999995 6788999999999999999999987653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=380.25 Aligned_cols=246 Identities=28% Similarity=0.419 Sum_probs=195.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.++.... + ...+ .....++++|+++.|+. +++.+|+|+|+++++
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~----~----------~~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP----A----------MPLP-----EPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC----C----------CCCC-----CCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 468899999999976554221 0 0000 11235999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||||++.+|+. |++||+.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987532 23579999999999987 99999985421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
..+.++..+ ..++.++. +++..||.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 122222211 12233333 34456888876 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+.+.|+++..+|+|+|+++|++. ..+.||++++|++|++++.|+.++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998767899999999973 45789999999999999999987654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=352.13 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=186.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~--- 124 (557)
..++++|+++.+.. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999842 2356999999999999999999999999999999999997531 124899999999863
Q ss_pred ----CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008669 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
..++.++||||++.+++ .|++||+.|+.... ... .+..++.+.++++.++|.+..++.++. ++..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12356999999999886 69999999875332 122 222344567888988886554555543 667899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++|+|++||++ ..+.++||||++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999875 69999999995 678889999999999999999999
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=341.76 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~--~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 58999999988 345699999999999999999999999999999999999875311 38999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++ +||+||+.+....+. ..++.+..+++.++++.+++.+ ..++ .+..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~ 153 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSG 153 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCH
Confidence 1246999999999887 799999988754321 1223344456778899888842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-----CCe
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGK 272 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~ 272 (557)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999999999865 69999999996 68899999999998 599
Q ss_pred EEEEcCcchHH
Q 008669 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|++++..
T Consensus 232 i~~~~~~~~~~ 242 (259)
T PRK14260 232 MVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHHHHh
Confidence 99999988763
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=345.31 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=181.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 36 ~~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYY-----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 34468999999988 23569999999999999999999999999999999999854 310138999999986421
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCC
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRG 194 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 194 (557)
.++.++|++|++.+++. ||+||+.+....+. ..+....++++.++++.+++. +..++ .+..
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 182 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALG 182 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chhh
Confidence 13469999999988875 99999998754321 112233345677888888874 33343 4567
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 68999999996 6788999999999999999
Q ss_pred EEcCcchHH
Q 008669 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
..|+++++.
T Consensus 261 ~~g~~~~~~ 269 (286)
T PRK14275 261 EHAPTAQLF 269 (286)
T ss_pred EeCCHHHHH
Confidence 999877653
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=339.07 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 48999999998 34679999999999999999999999999999999999986 211248999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++ .||+||+.+...... .......++.++++++.+++.. ..+. .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1346999999998886 699999988654321 1112233456788899999852 2333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 68999999996 6788999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 87765
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=340.51 Aligned_cols=223 Identities=22% Similarity=0.275 Sum_probs=184.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~ 125 (557)
.+..+.++++++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|+++|++...
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 5 APIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CCceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 45568899999888 35679999999999999999999999999999999999987511 148999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.++ .+|++||+.+....+. . ..+..+++.++++.++|.+..+...+ ..++.||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G 153 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGG 153 (261)
T ss_pred cccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHH
Confidence 134699999999887 5899999998754321 1 12334578889999998653322222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee--------C
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------G 270 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~ 270 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|++||++ +++.++||++++|+ +
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~ 231 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRT 231 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCC
Confidence 9999999999999999999999999999999999999999995 479999999996 57889999999996 8
Q ss_pred CeEEEEcCcchHH
Q 008669 271 GKTVYFGETSAAF 283 (557)
Q Consensus 271 G~iv~~G~~~~~~ 283 (557)
|++++.|+.++..
T Consensus 232 G~i~~~g~~~~~~ 244 (261)
T PRK14263 232 GYLVEMGPTAQIF 244 (261)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999877653
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=339.23 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC---C
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-~~~G~I~~~G~~~~~---~ 126 (557)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999987 2459999999999999999999999999999999999988710 138999999987532 1
Q ss_pred cccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHH
Q 008669 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 ~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++. +.+.+|+.+++.+.+... .... ..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 456679999987654322 1111 2356788999999976 2344 44679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.+++|++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 489999999996 6788899999999999999999887
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 227 ~~~ 229 (254)
T PRK10418 227 TLF 229 (254)
T ss_pred HHh
Confidence 653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=341.74 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=169.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468899998731 2356999999999999999999999999999999999999886 9999999986431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
++.++|++|++.+++ .||+||+.+.... ....... ....+.++.+ ++.+..+. .+++|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999988775 5999999874311 1111111 1122334443 33333333 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +++ ..||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999964 89999999997 455 56999999999999999988
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=381.73 Aligned_cols=245 Identities=29% Similarity=0.433 Sum_probs=195.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+... + ..+ . ......++++|+++.|+ +++.+|+|+|++++|
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~--~-----------~~~--~-~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP--G-----------AID--L-GRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC--C-----------CCC--c-CCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 35677888888887654432100 0 000 0 01122599999999984 225699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++||+.++.
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 433 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--- 433 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999996 9999999987542 13679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..++++ +.+.++..+ +++..||.+|+ ..+.||||||||++|||||+++|++++||||||+||+.+
T Consensus 434 -~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 434 -P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred -C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1 122222 334444444 34567888886 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ ...+.+|+|++|++|+++..|+.++..
T Consensus 507 ~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999875 479999999997 356789999999999999999977664
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=363.40 Aligned_cols=212 Identities=30% Similarity=0.423 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++|+|+++.|. ++++||+++||+|++||-+||+|+|||||||++|+|.++.+ + +|+|.+||++++.
T Consensus 351 ~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 351 SIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLES 422 (591)
T ss_pred cEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHH
Confidence 499999999993 34559999999999999999999999999999999999988 3 8999999998643
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (557)
.++.|||||||..+|.+ ||.+|+.++..- .+.+ .+.+..++.| +++.++|.||+ +...||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGG 491 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGG 491 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHH----HHHHHHHHcCcHHHHHhccccchhhHhh-cccccccc
Confidence 24669999999999988 999999998432 2232 2444444444 46788999997 56679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|||||+||||+++||+|+++|||||+||+++..++++.+++. ..|+|+|++.|+. .....||+|++|++|++...|+
T Consensus 492 ekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 999999999999999999999999999999999999999993 4689999999995 4678899999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
-+++..
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 988765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=371.95 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=186.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 6889999988 3467999999999999999999999999999999999998761 138999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.++|.+.. ++. ++.|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998864332110 122344456788999999997654 343 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999999988899999999995 678899999999999999999987654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=335.95 Aligned_cols=204 Identities=28% Similarity=0.332 Sum_probs=171.2
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC---CcccEEEEccCCC--CCCCCC
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~--l~~~lT 144 (557)
+|+|+|+++++||+++|+||||||||||+|+|+|+++|. ...+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 0028999999987532 1246999999974 567789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
+.||+.+..... .....+.++++.++++.+++.+ ..++ .+..|||||||||+|||+|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998764332 1112334567889999999973 3444 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+|||+.++..+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999774 89999999996 6788999999999999999999877653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=325.95 Aligned_cols=188 Identities=56% Similarity=0.868 Sum_probs=164.0
Q ss_pred eEEEEEeEEEEEEccC-cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 008669 50 ARLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~- 125 (557)
..++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchH
Confidence 3589999999984210 01257999999999999999999999999999999999998 775 9999999987542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+..... .||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~ 121 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVS 121 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHH
Confidence 2356999999999999999999997642110 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998779999999999754688899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=338.14 Aligned_cols=217 Identities=28% Similarity=0.334 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-----~~~ 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 48999999998 3456999999999999999999999999999999999999886 8999999875 321
Q ss_pred ---------CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 008669 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (557)
..+.++|++|++. +++.+|+.||+.+..... . .....+..+.+.++++.+++.+ ..++. ++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----ch
Confidence 0135899999974 456679999997643211 1 0112233467889999999963 55554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++..++|++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999876 489999999995 67888999999999999
Q ss_pred EEEEcCcchHH
Q 008669 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|++++..
T Consensus 227 i~~~~~~~~~~ 237 (253)
T TIGR02323 227 VVESGLTDQVL 237 (253)
T ss_pred EEEECCHHHHh
Confidence 99999876553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=335.96 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~--~~~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 58999999988 245699999999999999999999999999999999997 3554 8999999987532
Q ss_pred --Ccc-cEEEEccCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 --~~~-~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
..+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 378999999999999999999875432110 0111223345678899999997 34555432 24999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (557)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 556666 899999999999999
Q ss_pred cCcchH
Q 008669 277 GETSAA 282 (557)
Q Consensus 277 G~~~~~ 282 (557)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 988743
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=343.42 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 358999999998 34579999999999999999999999999999999999986310 138999999987421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++. ||+||+.+....+. ... +..++++++++.++|.+ ..++ .+.+||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 99999998754321 122 33456888999999853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE-EeeCCeEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv~ 275 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++ .++.+++||++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999995 67888999975 679999999
Q ss_pred EcCcchH
Q 008669 276 FGETSAA 282 (557)
Q Consensus 276 ~G~~~~~ 282 (557)
.|++++.
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987664
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=340.33 Aligned_cols=222 Identities=25% Similarity=0.291 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEEcc----CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008669 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++|+++.+... ...++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 37899999988410 001367999999999999999999999999999999999999885 9999999986431
Q ss_pred -------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008669 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. +..++. ++.|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccC
Confidence 134699999997 46677899999976543111 123444556789999999996 455654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ +++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999764 89999999996 6788899999999999999
Q ss_pred EEcCcchHH
Q 008669 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|++++..
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887654
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=318.01 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+.+||.+.| +...+|++||++.++|+++.|+|.|||||||+|+||.-+..|+ .|+|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48889999888 5788999999999999999999999999999999999998886 9999999975311
Q ss_pred ------C-------cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008669 126 ------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (557)
Q Consensus 126 ------~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (557)
. +.+.++|+|..+++++|||.||+.-+..-- -+.++.+..++++.+|..+|+.+..|. +|
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 0 124689999999999999999987653211 135677888899999999999988876 56
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+...+|+.|++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 67999999999999999999999999999999999999999999999999999999999994 68889999999999999
Q ss_pred EEEEcCcchHH
Q 008669 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+-++|+|+++.
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999998874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.55 Aligned_cols=223 Identities=27% Similarity=0.338 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 008669 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~ 123 (557)
..|+++||++.|...++ ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 35999999999842110 1246999999999999999999999999999999999999886 89999999865
Q ss_pred CC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 008669 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (557)
Q Consensus 124 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 192 (557)
.. .++.++||+|++ .+++.+||.||+.+...... .....+.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 21 134699999997 58899999999988654321 112344557788999999996 455654 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+ +.+.++||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999999874 89999999995 6889999999999999
Q ss_pred eEEEEcCcchHH
Q 008669 272 KTVYFGETSAAF 283 (557)
Q Consensus 272 ~iv~~G~~~~~~ 283 (557)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=371.00 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=183.8
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------cc
Q 008669 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FG 128 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~------~~ 128 (557)
+|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.... .+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 5788887 3467999999999999999999999999999999999999886 99999999875321 24
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+.............+..++++++++.+++.+..++.+ .+|||||||||+||++
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987632110101123344567889999999987777654 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999988899999999995 678899999999999999999987764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=341.22 Aligned_cols=223 Identities=24% Similarity=0.294 Sum_probs=180.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 17 ~~~~l~~~nl~~~~-----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 17 DHSVFEVEGVKVFY-----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CCceEEEeeEEEEe-----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 34479999999998 3457999999999999999999999999999999999997632 1248999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++. ||.||+.+....+ ... ...++.+.+.++.+++.+...... +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgG 165 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGG 165 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHH
Confidence 13569999999988875 9999998864432 111 122344667788888742211111 1245679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee---------
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------- 269 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------- 269 (557)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999965 68999999996 67889999999998
Q ss_pred CCeEEEEcCcchHH
Q 008669 270 GGKTVYFGETSAAF 283 (557)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (557)
+|++++.|+++++.
T Consensus 244 ~G~~~~~g~~~~~~ 257 (274)
T PRK14265 244 RGKLVEFSPTEQMF 257 (274)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999988764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.74 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=172.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. .++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999998831 1236999999999999999999999999999999999999886 9999999986431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
.+.++|++|++.+++ .||+||+.+.... ....+.. ..+.+.++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999875321 1111111 1234455555 45444443 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ .++.. ||++++|++|++++.|++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999996 56654 999999999999999987
Q ss_pred chHHH
Q 008669 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++..+
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=324.60 Aligned_cols=186 Identities=48% Similarity=0.803 Sum_probs=161.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCC-CCc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTK-LSF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~-~~~ 127 (557)
.++++|+++.|...+ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.. | .+|+|.++|++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhh
Confidence 588999999984211 12569999999999999999999999999999999999863 4 3899999998753 223
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+.... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 5699999999999999999999875210 0 49999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEEEEc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (557)
||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999974357889999999998 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=369.18 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 48999999998 3457999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.++............+.++++.++++.+||.+..++.+ .+||||||||++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHH
Confidence 13569999999999999999999998632111111223445567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999988899999999996 678899999999999999877654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.35 Aligned_cols=245 Identities=30% Similarity=0.426 Sum_probs=198.6
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++.... +..+ . ....-.++++|++++|+. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~----~~~~---------~-----~~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDT----GTRA---------I-----ERARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------C-----CCCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 467889999999986555321 0000 0 011225999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999987532 23579999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+..+. +++.+.++.+|+ ++..||.+|+ ..+.||||||||++|||+++++|++++||||||+||+.+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 335555666554 4567899987 457799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ ...+.||+|++|++|+++..|+.++..
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 579999999997 457889999999999999999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=411.74 Aligned_cols=255 Identities=23% Similarity=0.310 Sum_probs=200.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+. ...+..+. .. .......|+|+||++.|+.+ +++++|+|+||+|++
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~-~~~~~~~~-------~~----~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDV-RDNGGIRI-------KN----KNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCC-CCCccccc-------cc----CCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 578999999999987664321 00000000 00 00112359999999999532 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC---------------------------------------------------C
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~---------------------------------------------------~ 110 (557)
|+.+||+||||||||||+++|.|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------C
Q 008669 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------G 178 (557)
Q Consensus 111 ~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------g 178 (557)
+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.++.. ..+.++ +.+.++.. .
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATRED----VKRACKFAAIDEFIES 1343 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHh
Confidence 148999999998532 24679999999999976 99999998732 223333 33333333 3
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchH
Q 008669 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE 257 (557)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~ 257 (557)
|++.+||.||+ +...||||||||++|||||+++|+|||||||||+||+.++..|.+.|+++. .+++|+|+++|+++
T Consensus 1344 LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls-- 1420 (1466)
T PTZ00265 1344 LPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA-- 1420 (1466)
T ss_pred CccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--
Confidence 57788999996 667799999999999999999999999999999999999999999999986 36899999999963
Q ss_pred HHhcCCeEEEeeC----CeEE-EEcCcchHH
Q 008669 258 VFELFDRLYLLSG----GKTV-YFGETSAAF 283 (557)
Q Consensus 258 i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 283 (557)
..+.||+|++|++ |+++ +.|+.+++.
T Consensus 1421 ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1421 SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 4678999999999 9955 899988765
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=386.75 Aligned_cols=246 Identities=27% Similarity=0.434 Sum_probs=197.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+++.|.+|+.++++.++..+. .+ .. .. ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~---~~-----------~~--~~-~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRS---AG-----------LA--AL-PELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccC---CC-----------CC--CC-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 467899999999986654321 00 00 00 011235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++.
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~--- 555 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN--- 555 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC---
Confidence 9999999999999999999999999986 9999999998542 23579999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..+ +++..||.+|+ ...+||||||||++|||||+++|++||||||||+||+.+
T Consensus 556 -~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 556 -P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred -C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 1 12222 2333444443 34567898887 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++. . .+.||+|++|++|++++.|+.+++.+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999984 5799999999973 4 46699999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=335.02 Aligned_cols=222 Identities=22% Similarity=0.313 Sum_probs=182.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
+.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.. |..+.+|+|.+||.+...
T Consensus 2 ~~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 2 YRIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred cEEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 358899999988 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++. |++||+.+..... ........++++.+.++.+++.+...... +..+..||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHH
Confidence 13569999999988885 9999998764322 11123334567888999998854321111 224567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999964 79999999996 6889999999999999999999887
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 231 ~~ 232 (250)
T PRK14266 231 QI 232 (250)
T ss_pred HH
Confidence 65
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=357.90 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=195.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
.-++++|++++| +..++|+||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|++||++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358899999999 5688999999999999999999999999999999999999997 99999999975421
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
...|+.|+|+..++|+|||.||+.++..... ..-+.++..++++.++|+.+|+....++.++ +||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 2458999999999999999999998865443 2335678888899999999999655788776 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|.|||||..+++++||||||++|+......+.+.+++|+++|.+||++||. .+|++++||||.+|++|+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999998883
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=337.21 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G------~~~~ 124 (557)
.++++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++| ++..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 38999999998 4567999999999999999999999999999999999999875 66655555 4322
Q ss_pred C-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCC
Q 008669 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGI 195 (557)
Q Consensus 125 ~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~L 195 (557)
. .++.++|++|++.+++.+|++||+.+...... .....+.++++.++++.+++.+ ..+. .++.|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~L 154 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-----PASQL 154 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----CcccC
Confidence 1 13568999999999999999999998754321 1123445567889999999964 2333 45679
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.++||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 69999999995 67889999999999999999
Q ss_pred EcCcchHH
Q 008669 276 FGETSAAF 283 (557)
Q Consensus 276 ~G~~~~~~ 283 (557)
.|+.++..
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99887654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=340.38 Aligned_cols=218 Identities=26% Similarity=0.376 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--FG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--~~ 128 (557)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.... .+
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccc
Confidence 589999999883 2356999999999999999999999999999999999999886 99999999875321 23
Q ss_pred cEEEEccCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 129 TAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 129 ~~~yv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++|++|++.+. ...+++|++.++...... ........+++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 599999997652 234789998654210000 00112233456788899999988777755 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+++++ +|++++.|++++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999987899999999996 6788999999877 8999999987764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=338.33 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|++++. ...+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 58999999988 3457999999999999999999999999999999999987531 1248999999986521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++. ||+||+.+..... ... .+..++++++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13469999999988885 9999998875432 111 123355667788888743211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee---------CCe
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~ 272 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999995 68999999999998 799
Q ss_pred EEEEcCcchHH
Q 008669 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999987764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=337.50 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=169.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~--~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCC--CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 468899998732 11356999999999999999999999999999999999999886 9999999987431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
.+.++|++|++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....+. .++.|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999988876 59999998753211 1111111 112222222 33222222 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 789999999996 4565 8999999999999999987
Q ss_pred chHHH
Q 008669 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++..+
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 66544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=377.12 Aligned_cols=244 Identities=26% Similarity=0.342 Sum_probs=196.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++.... +.. +. ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~~~---------~~-----~~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----GSE---------PV-----PEGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----CCC---------CC-----CCCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 467899999999986654321 000 00 011224899999998842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.++|+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999997532 13579999999999986 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|+++||||||++||+.+
T Consensus 415 ---~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 122222 333444443 45667888887 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +|+|+|+++|++. ..+.+|++++|++|+++..|+.+++.
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999985 5899999999973 45679999999999999999987764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=405.31 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=198.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.|+++||++.|.. +.+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999831 1367999999999999999999999999999999999999986 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.+||+||++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+..|+.++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2356999999999999999999999877654 23444556778899999999988887654 699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
|+||+.+|+++||||||+|||+.+++.+++.|++++++|+|||++||++ +++..+|||+++|++|+++..|++++++..
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999995 789999999999999999999999999876
Q ss_pred HH
Q 008669 286 FA 287 (557)
Q Consensus 286 f~ 287 (557)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=331.22 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.+... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999998731 1256999999999999999999999999999999999999886 8999999987421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGer 200 (557)
++.++|++|++.+++ .||+||+.+.... .. .+.+.+.++.+++.+..++... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999764211 11 2345677888888765554321 113468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++ +.+ ++||++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999765 8999999996 444 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=352.57 Aligned_cols=254 Identities=27% Similarity=0.385 Sum_probs=209.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|-+|+.++|.+.|...... .. .++...|..+++++.- .+.++.+|+|+||.+.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m------------------~L-P~P~g~L~Ve~l~~~P---Pg~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERM------------------PL-PAPQGALSVERLTAAP---PGQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCC------------------CC-CCCCceeeEeeeeecC---CCCCCcceecceeEecC
Confidence 36778899999998877755311 11 1344569999999843 33567899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||.|+|.|..+|. +|.|.+||.+.+.. -++|||+||+-.+|+. ||.|||.-...-.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999999886 99999999875421 3679999999999998 9999996332111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
.++.+-...+.+.+.+++ +.+.+.+||.||+ ....||||||||+++||||..||.+++||||-|+||......+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 111111222334556665 5688999999997 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHH
Q 008669 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (557)
Q Consensus 237 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (557)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++...
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999984 78999999999999999999999988754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=331.50 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
+.++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6677888776 4577999999999999999999999999999999999999886 9999999986421
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
..+...+++.+||+||+.+..... .....+.++++.++++.++|.+..++.+ ++||||||||++|||+|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 111234557789999998875432 1233444566788999999988777755 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999995 6788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=335.88 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=171.5
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 145 (557)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999743 89999999875321 2458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEE
Q 008669 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~-------~p~llll 218 (557)
+||+.+.... .....+..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886321 1123334567889999999987776644 5799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987899999999995 678899999999999999999987654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=324.84 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=170.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 6889999988 3457999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+. . ...++++++++.+||.+..++.+ +.||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHH
Confidence 569999999999999999999998754321 1 22356788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++..+.+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999996 5677777788776
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=342.06 Aligned_cols=227 Identities=29% Similarity=0.407 Sum_probs=182.5
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 42 ~~~~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 42 GDAKLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CCceEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 34468999999998 3467999999999999999999999999999999999998521 0248999999987531
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC---------CCCC-HHHHHHHHHHHHHHcCCCcccccccc
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIG 188 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg 188 (557)
.++.++|++|++.+++. ||+||+.+....... .... ....++.+.++++.+++.+......
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred ccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 12469999999988875 999999987532100 0011 1223466788999998854332222
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE-EE
Q 008669 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YL 267 (557)
Q Consensus 189 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v-~~ 267 (557)
+..+++||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEE
Confidence 225678999999999999999999999999999999999999999999999976 48999999996 6788999997 57
Q ss_pred eeCCeEEEEcCcchHH
Q 008669 268 LSGGKTVYFGETSAAF 283 (557)
Q Consensus 268 L~~G~iv~~G~~~~~~ 283 (557)
|++|++++.|++++..
T Consensus 273 l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVEYDDTDKIF 288 (305)
T ss_pred ecCCEEEEeCCHHHHH
Confidence 8999999999877653
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=327.23 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Ccc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (557)
.++++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 11 LLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSR 82 (214)
T ss_pred eEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhh
Confidence 58999999987 3456999999999999999999999999999999999999886 8999999987542 224
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+....+. . ...+.+.++++.++|.+..++.+ ..||||||||++|||+
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 151 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARL 151 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999999999999999988754321 1 12345678899999987777754 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ +++.+++|++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988899999999996 689999999999863
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=331.92 Aligned_cols=218 Identities=28% Similarity=0.355 Sum_probs=177.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+. +|. +|+|.++|.+...
T Consensus 2 i~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 7899999988 3457999999999999999999999999999999999995 464 8999999986421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhh-ccC--C-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL--P-DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++.+|+.+++.+... ... . ......+..+++++.++.+++.+ ..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 11359999999988888888777654321 110 0 00112233566788899999953 3444321 369999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (557)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 566666 8999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.+.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=332.83 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEcc---------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 008669 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G 114 (557)
+.++++||+++|+.. +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 568999999998752 123456999999999999999999999999999999999999886 89
Q ss_pred EEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008669 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (557)
Q Consensus 115 ~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (557)
+|.++|+ +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..++.+ +.
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 356778877788899999998764432 2234444556778888889987776644 57
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|.+++++|+|||++||++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999995 6788999999999999999
Q ss_pred EEcCcchHHH
Q 008669 275 YFGETSAAFE 284 (557)
Q Consensus 275 ~~G~~~~~~~ 284 (557)
+.|+.++..+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=374.57 Aligned_cols=246 Identities=25% Similarity=0.337 Sum_probs=193.4
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.++.+|+.++++.++.... . . +.. .. ......++++|+++.|+ +++.+|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~-~---~----------~~~-~~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREE-P---A----------DAP-EL-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccC-C---c----------cCC-CC-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 467889999999976544221 0 0 000 00 01122599999999984 224689999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999987532 23579999999999875 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++.. +.++.. .+.+..|+.+|+ ....||||||||++|||||+++|++|+|||||++||+.+
T Consensus 435 ---~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 ---GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred ---CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 12233222 222222 234456788876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++ +.+ +.||+|++|++|++++.|+.++..+
T Consensus 507 ~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 507 EARVKNAIDALR-KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999884 589999999997 444 6799999999999999999876643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=333.68 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+. ..+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 478999999883 1246999999999999999999999999999999999999886 8999999986431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++. |++||+.+.... ... ..+.+.++.+++.+..+ +..+ ..++.||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13469999999988876 999999875321 111 12333344444432221 1222 245689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++||++|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ .++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 589999999996 455 4599999999999999888
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
.++..
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=376.09 Aligned_cols=221 Identities=26% Similarity=0.332 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++|+++.|.... +.+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 599999999984211 1356999999999999999999999999999999999999886 899999986320
Q ss_pred -------------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 008669 125 -------------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (557)
Q Consensus 125 -------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 186 (557)
...+.+|||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||.+ ..+.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0113699999997 68888999999999865421 2345555678899999999964 3444
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeE
Q 008669 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 265 (557)
++.+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++++++ |+|||++||++ ..+.++||||
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999999864 89999999995 6788999999
Q ss_pred EEeeCCeEEEEcCcchHH
Q 008669 266 YLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~ 283 (557)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999887653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=375.50 Aligned_cols=248 Identities=29% Similarity=0.411 Sum_probs=196.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+... . .. ....+....++++|+++.|+.+ .++.+|+|+|++++|
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~----~---------~~--~~~~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPA----H---------PK--TLPVPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCC----C---------Cc--cCCcCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 46788999999998654422100 0 00 0000112359999999998431 125799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++|+||++.+|+. |++|||.++.
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~--- 438 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR--- 438 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999986 8999999987532 13579999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+. +.+.+.++..++ ++..|+.+|+ ....||||||||++||||++++|++|+||||||+||+.+
T Consensus 439 -~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 439 -P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred -C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1 1122 234555565554 3456788876 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ +..+.+|++++|++|+++..|+.++..
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 579999999996 346789999999999999999977653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=368.86 Aligned_cols=217 Identities=25% Similarity=0.301 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G--------- 120 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999988 3467999999999999999999999999999999999996 565 89999972
Q ss_pred --------------EeC--------C-------CCcccEEEEccC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 008669 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (557)
Q Consensus 121 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v 170 (557)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 22344556778
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 008669 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (557)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~ 249 (557)
.++++.+||++..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999987776644 57999999999999999999999999999999999999999999999966 5899999
Q ss_pred EeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008669 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 250 ~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
+||++ ..+.++||++++|++|++++.|++++..+.
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 678889999999999999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=324.37 Aligned_cols=194 Identities=28% Similarity=0.366 Sum_probs=169.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999987432 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+.... . ..++++++++.+++.+..++.+ +.||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD----H-----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhccc----c-----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHH
Confidence 5699999999998899999999875321 0 2355788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+|+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ .+....+|+++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999987899999999997 4678899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=334.44 Aligned_cols=221 Identities=24% Similarity=0.316 Sum_probs=180.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK--- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~--- 124 (557)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYY-----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEE-----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 358999999998 34579999999999999999999999999999999999987521 14899999997532
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
...+.++|++|++.+++. |++||+.+..... ... ....++++.+.++.+++.+...... +..+..|||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 164 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSG 164 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCH
Confidence 113468999999999886 9999998875422 111 2223456777888887742111111 124467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 68999999995 6788999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.++.
T Consensus 243 ~~~~~ 247 (265)
T PRK14252 243 ATDTI 247 (265)
T ss_pred CHHHH
Confidence 87665
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=329.66 Aligned_cols=207 Identities=24% Similarity=0.388 Sum_probs=172.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999988 3467999999999999999999999999999999999998886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++. |++||+.+....+. .. ...++++++++.+++. ...++. ++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHH
Confidence 12468999999988875 99999988644321 11 1234577899999995 355554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEEEcC
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~ 278 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ +++ ..||++++|+ ++..+.+|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999976 489999999996 456 4699999995 555555553
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=316.48 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46889999882 346999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+. ||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999973 8999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.+++|++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987789999999996 578889999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.01 Aligned_cols=221 Identities=23% Similarity=0.343 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK-- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~-G~~---~~-- 124 (557)
.|+++|+++.|...+++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 59999999988421112356999999999999999999999999999999999999886 8999996 532 11
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCcccC
Q 008669 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHLR 193 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~ 193 (557)
..++.++|++|++.+++.+||+||+.+...+. .+.++.++++.++++.+||.+ ..++ .+.
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 426 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YPD 426 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Chh
Confidence 11245999999998999999999998764321 123334467889999999975 3455 446
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999764 89999999996 67889999999999999
Q ss_pred EEEEcCcchHHH
Q 008669 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
+++.|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999998876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=319.14 Aligned_cols=218 Identities=26% Similarity=0.420 Sum_probs=194.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|++++| +++.+|+++|+++++|.+++|+|||||||||||.+++++++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6788999998 6788999999999999999999999999999999999999886 99999999985422
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++.+-|+..+...+||+|-+.|+..- ...+....+.+..+++.++.++|++..|+++ .+||||||||..||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 25578899999998999999999998422 2223345566788999999999999998865 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.++.+.+.++||||.++||-..+.++++.|++++++ |+||+++.||. ..+..++|+|+-|++|+++.+|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999874 99999999995 67889999999999999999999998763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.80 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 008669 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~ 124 (557)
.|+++|+++.|..+.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++ + +|+|+++|++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999999842110 13579999999999999999999999999999999999984 4 899999998642
Q ss_pred C--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 008669 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (557)
Q Consensus 125 ~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 193 (557)
. .++.++|++|++ .+++.+||+||+.++...+.. .....+.++++.++++.+||. +..++. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124589999996 478889999999987543211 123344456788999999997 356664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999874 89999999995 67889999999999999
Q ss_pred EEEEcCcchHH
Q 008669 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887663
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=365.93 Aligned_cols=224 Identities=28% Similarity=0.346 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.|... +..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. .+.+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 48999999998421 11357999999999999999999999999999999999999762 1138999999987421
Q ss_pred ------CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 008669 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~ 194 (557)
..+.++|++|++. +++.+|++|++.+...... ..+..+..++++++++.+||.+. .++. +.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY-----PHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC-----Ccc
Confidence 1146999999974 6777899999886543211 23344556778999999999752 3554 457
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||||++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999775 89999999996 678899999999999999
Q ss_pred EEEcCcchHH
Q 008669 274 VYFGETSAAF 283 (557)
Q Consensus 274 v~~G~~~~~~ 283 (557)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999887653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=373.13 Aligned_cols=220 Identities=31% Similarity=0.413 Sum_probs=174.8
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.++...... .+ ... .. ......++++|+++.|+ +++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~--------~~~-~~-~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPEGV----VP--------AAG-AL-GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCC----CC--------CCc-cc-CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 46789999999998665432100 00 000 00 01123599999999984 224599999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CcccEEEEccCCCCCCCCCHHHHHHHHhhccC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC---
Confidence 9999999999999999999999999996 9999999987542 23579999999999988 99999998621
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 158 PDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..++ +++.+.++..++ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++
T Consensus 434 --~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 434 --DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1222 234455555444 5678999997 5567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999864 579999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=321.37 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|.. +|+ +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999883 457999999999999999999999999999999999994 554 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+..++|++|++.+++.+|+++++. . ..+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1234999999999898888887760 0 1135999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-cCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +.+.+ ++|++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 999999999999999999999999999999999999987789999999996 46666 7999999999999999944 45
Q ss_pred HHHH
Q 008669 283 FEFF 286 (557)
Q Consensus 283 ~~~f 286 (557)
.+.+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=332.64 Aligned_cols=211 Identities=32% Similarity=0.422 Sum_probs=168.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46889999873 1356999999999999999999999999999999999999886 9999999987431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGe 199 (557)
++.++|++|++.+++ .||+||+.+.... ....+ +.+.++..++.+ ..++.+. ..++.|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHH
Confidence 246999999998886 5999999875321 11111 222233333321 1222222 2456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +.+. .||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999996 4564 5999999999999998887
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=331.59 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 48999999998 3457999999999999999999999999999999999999886 999999873 359
Q ss_pred EEEccCCCCCCCC--CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTL--TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 131 ~yv~Q~~~l~~~l--TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
+|++|++.+++.+ |+++++.+.. ... .+++.++++.+||.+..++.+ ..||||||||++||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 9999998877753 7888765321 111 234678899999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.||++++|++ +++..|++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999775 89999999996 678899999999965 78899987765
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=301.39 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=190.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.|+++|+++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+.-|. +|+..+.|...+.
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCc
Confidence 357889999988 5678999999999999999999999999999999998877775 9999998864211
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.+|+|+|+-.++|.+||.|||.-+. ++. .++++++.+.+..++|+++.|.+.+|. .+-.||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsgg 145 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGG 145 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccc
Confidence 1356999999999999999999997653 221 256788888999999999999999887 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||.. +.+.+.+.+|+.|++|++++.|+
T Consensus 146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecc
Confidence 99999999999999999999999999999999999999999999999999999995 67889999999999999999998
Q ss_pred cc
Q 008669 279 TS 280 (557)
Q Consensus 279 ~~ 280 (557)
.+
T Consensus 225 a~ 226 (242)
T COG4161 225 AS 226 (242)
T ss_pred hh
Confidence 65
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=324.27 Aligned_cols=206 Identities=29% Similarity=0.371 Sum_probs=170.8
Q ss_pred EEEEeEEEEEEccC-cc-cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 008669 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTKL 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~--G~--~~~~ 125 (557)
++++|+++.|.... ++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 78899999984211 11 246999999999999999999999999999999999999886 8999998 42 3210
Q ss_pred ---------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 008669 126 ---------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~L 195 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+|+.+. .+.. +.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccC
Confidence 1245899999999999999999998864322 22333445678889999999763 3443 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987899999999994 66778999998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=335.96 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. +.+.+|+|+|++|++||+++|+|+||||||||+++|+|+++ . +|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 4889999999842 23569999999999999999999999999999999999986 3 7999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
.++.++|+||++.+|+. |++||+..... ... +.+.+.++.+||.+..+ +.+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13569999999999986 99999964211 112 34566778888865443 34433 34569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||||++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999874 589999999996 5555 599999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=364.25 Aligned_cols=221 Identities=21% Similarity=0.349 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~~~~~~G~I~~~G~~~~~~--- 126 (557)
.|+++|+++.|.. ++++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|++....
T Consensus 259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 5899999987731 113569999999999999999999999999999999999987 45 89999999875311
Q ss_pred ---cccEEEEccCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.+.++|++|++ .+++.+||.||+.+........ .....+.+++++++++.+++. +..++.+ +.|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 24589999995 4788899999998763211110 012334456788999999996 4667654 56999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=321.09 Aligned_cols=197 Identities=28% Similarity=0.364 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Ccc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 58999999998 3457999999999999999999999999999999999999886 8999999986432 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+...... .. .+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHH
Confidence 68999999888888999999987654321 11 234788999999987666644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.. |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999987899999999996 45554 88887754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=319.12 Aligned_cols=193 Identities=27% Similarity=0.349 Sum_probs=165.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999987432 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|+.||+.+...... . + ++.+.++++.+++.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999988888999999988654321 1 1 245778999999987777654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 267 (557)
+++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .-.+++++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEee
Confidence 999999999999999999999999999999999878999999999974 234577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=314.82 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRY-----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEE-----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 4689999988 3456999999999999999999999999999999999999886 9999999986432
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135699999999999889999987532 8999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+++|++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999886 89999999995 67888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=324.49 Aligned_cols=207 Identities=25% Similarity=0.369 Sum_probs=169.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+||++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999998842 2357999999999999999999999999999999999999886 8999999987431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++ .||+||+.+... ... +.+.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 1356999999998876 599999964311 111 23455566666654322 2222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999996 4565 499999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=362.64 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999753 23899999999999999999999999999999999999886 8999999987532
Q ss_pred -CcccEEEEccC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008669 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (557)
Q Consensus 126 -~~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 194 (557)
.++.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+||. +..++.+ +.
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46889999999998753211 000 0 11223345678999999996 6677755 46
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999996 6889999999999999999
Q ss_pred EEcCc
Q 008669 275 YFGET 279 (557)
Q Consensus 275 ~~G~~ 279 (557)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=313.23 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899998865 899999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 134699999984 57888999999976421 8999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987789999999995 688999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=327.81 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=168.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.++++|+++.+..+ .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence 358999999998421 1246999999999999999999999999999999999999886 8999999986421
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++ .||+||+.+..................+.++++.+ |+++..+. .++.||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qr 158 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQR 158 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHH
Confidence 1356999999998886 59999998753211000000011112356778887 67665555 346799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
++||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++. .||++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999865 68999999996 4664 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=348.87 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++||++.+.. +..+.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~--~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD--GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCC--CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 5889999887732 12356999999999999999999999999999999999999886 99999999752
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
++.+...+.+.+|++||+.+..... ..+..+..+++.++++.++|.+..++.+ +.||||||||++|||||+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 2233445667789999998754322 2234445566788999999988777654 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987899999999996 67889999999999999999999888764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=326.32 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=173.0
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCcccEEEEccCCCCCCCCC
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 144 (557)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||+.. ...++++||||||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776899999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 224 (557)
|+.||.|+.... .....+++.+.+|++|..+. +|..|||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985321 23457888999999999987 5667999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||-..+.+++-+|++++++ +..|+.+||.+ .|+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999875 88999999995 79999999999999999999999988764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=397.07 Aligned_cols=249 Identities=18% Similarity=0.232 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.++++.+++..... .+.. +... -+....|+|+|++++|+. +.+.+|+|+|++|++
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~-~~~~----------~~~~--~p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAII-ENNR----------PVSG--WPSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccc-cCCC----------CCCC--CCCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 45788899999998766533210 0000 0000 011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|+. |+||||.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997542
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.+.++..++ ++..||.+|+ .+.+||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1335 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 12222 34455555544 4567899986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|+|+++|++ +. ...||+|++|++|++++.|+++++.+
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl-~t-i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRL-NT-IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 579999999996 34 45699999999999999999988753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=359.73 Aligned_cols=208 Identities=24% Similarity=0.255 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-S--- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~--- 126 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 48999999998 3456999999999999999999999999999999999999886 8999999875421 1
Q ss_pred -cccEEEEccCCCC--C------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 127 -FGTAAYVTQDDNL--I------GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 -~~~~~yv~Q~~~l--~------~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..++.+ .+|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 2458999998643 1 146888887532 122456888999999988777755 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 218 ~~~~~~ 223 (490)
T PRK10938 218 EREEIL 223 (490)
T ss_pred CHHHHh
Confidence 887653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=316.27 Aligned_cols=192 Identities=22% Similarity=0.277 Sum_probs=164.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|++... ..
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999986532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999998888899999998864211 11 245788999999987666644 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
+++.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ..+.+|...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999999778999999999963 345677544
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=396.07 Aligned_cols=249 Identities=21% Similarity=0.253 Sum_probs=199.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.+++..... .+..| ... -+....|+|+|++++|.. +.+.+|+|+|++|+|
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~-~~~~~----------~~~--wp~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVI-ENNRP----------PPG--WPSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccc-cCCCC----------CCC--CCCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 45788999999997665532210 00000 000 011235999999999942 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|+. |+||||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.++++..++ ++..||.+|+ .+.+||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 12222 24444554443 4578999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|+|+++|+++ . ...||||++|++|+++++|+++++.+
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~-t-I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN-T-IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH-H-HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999874 5799999999964 4 45699999999999999999998764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=340.43 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| ++..+++|||+++++||++||+|+||||||||+|+|.|.+.|+ +|+|.+||++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 58999999999 4688999999999999999999999999999999999999997 99999999975421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
+..||+|.|++.+++++||.||+..+..-........++.+++++++.+..||+-..|.+|+ .||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24589999999999999999999998653322245677788899999999999888888776 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.. .|+.++|||+.+|++|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999994 79999999999999999986655
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=364.02 Aligned_cols=229 Identities=30% Similarity=0.420 Sum_probs=182.6
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++.... . . ... ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~---~--~---------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG---K--A---------PVT----AAPAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC---C--c---------CCC----CCCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 467899999999974432110 0 0 000 001125999999999842 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999997542 23579999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++ +.+.+.++..++ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234455555554 4457899987 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+..+.+.|+++. +++|+|+++|++ + ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~-~-~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRL-A-LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence 999999999885 589999999996 3 35789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=314.01 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=150.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CcccEEEEccCCC--
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-------~~~~~~yv~Q~~~-- 138 (557)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 456999999999999999999999999999999999999886 9999999987531 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 008669 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 218 (557)
++ ..||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 469999999865432 2233444567889999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
||||+|||+.++..+.+.|++++++|+|||++||++
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 999999999999999999999987899999999996
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=309.15 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468899998731 1246999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999986 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ +.+ +.||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987899999999996 455 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=344.44 Aligned_cols=246 Identities=26% Similarity=0.374 Sum_probs=199.3
Q ss_pred hHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEE
Q 008669 6 ASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLT 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 85 (557)
-.+|+++++.++|+.-+. +|-.| -......++|+|+++.|. .++.+|+||||++.||+.+
T Consensus 508 DmEnmfdllkee~eVvd~--P~a~p--------------l~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDL--PGAPP--------------LKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHhhcCchhhcC--CCCCC--------------ccccCCeEEEEEeEEecC----CCCceeecceEEecCCcEE
Confidence 367899999888875431 11111 112345699999999995 5688999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 86 ~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
|++||||+||||+|++|..+.+.+ +|+|.+||++++. .++.||.||||..+|.+ |+..|++|+..-
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~----- 638 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPS----- 638 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCC-----
Confidence 999999999999999999998875 9999999998642 24679999999999987 999999987322
Q ss_pred CCHHHHHHHH--HHH-HHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008669 161 MPWSEKRTLV--ERT-IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (557)
Q Consensus 161 ~~~~~~~~~v--~~~-l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L 237 (557)
.+.++..+.+ ..+ =+.++..+.++|.||++. -.|||||||||+|||+++++|.+++|||.||+||..+.+.|...|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG-LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG-LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc-cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 2233322211 111 123688999999999844 459999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 238 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+++. |+|.|++.|..+. .-.+|.|+++++|+|++.|.-+|+..
T Consensus 718 ~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 99975 6899999999753 34699999999999999998877653
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.55 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=164.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCC--CCCCHHHHHHHHhh
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~~~ 154 (557)
|++++||+++|+|+||||||||+++|+|+++|+ +|+|.+||++.....+.++|++|++.++ ..+|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468899999999999999999999999999886 9999999987543345799999998763 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008669 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 155 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
.... ........++++.++++.+++.+..++.+ .+||||||||++|||+|+.+|+++|+||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00112233456888999999987776654 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 234 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+.|++++++|+|+|++||++ +++.++||+++++ +|++++.|+.++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999987899999999996 5788999999999 89999999877653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=326.73 Aligned_cols=213 Identities=22% Similarity=0.289 Sum_probs=169.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.++++|+++.+.. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHH
Confidence 35999999999831 1256999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++. |++||+.... .... ..+.+.++..++.+ ..++.++. .++.|||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~ 159 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSV 159 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCH
Confidence 13569999999988875 9999985321 0111 11223333333322 12233322 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++ +++.. ||++++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 489999999997 45554 9999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 237 ~~~~~~ 242 (257)
T cd03288 237 TPENLL 242 (257)
T ss_pred CHHHHH
Confidence 887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=357.40 Aligned_cols=221 Identities=22% Similarity=0.344 Sum_probs=183.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~-~~~~~G~I~~~G~~~~~--- 125 (557)
..|+++|+++.+.. ++++.+|+|+||++++||+++|+||||||||||||+|+|+++| . +|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCH
Confidence 35899999987621 1134699999999999999999999999999999999999975 4 8999999987531
Q ss_pred ---CcccEEEEccCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008669 126 ---SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ---~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (557)
.++.++|++|+. .+++.+||+||+.+....... ........+++++++++.+++.+ ..++.+ +.||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCC
Confidence 124689999995 588999999999875321110 01123334567889999999964 456654 4699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ +++.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999996 688999999999999999987
Q ss_pred cCcch
Q 008669 277 GETSA 281 (557)
Q Consensus 277 G~~~~ 281 (557)
++.++
T Consensus 485 ~~~~~ 489 (500)
T TIGR02633 485 FVNHA 489 (500)
T ss_pred Ecccc
Confidence 76543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=310.29 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899998832 1236999999999999999999999999999999999999886 9999999986421 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56999999998876 5999987 2359999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+++.+|++++|||||+|||+.++..+++.|++++ ++.|||++||++ .++ ..+|++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 589999999996 455 469999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=314.90 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4889999998831 1246999999999999999999999999999999999999886 9999999987421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++. |++||+.+.. .... +.+.+.++ + +. .+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999996531 1111 12333333 2 22 456799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||+|+.+|+++||||||+|||+.++..+.+.|+++. +|+|+|++||++ .++.. +|++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 589999999996 45554 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=355.54 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++ .+|+|+||++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 578888863 2699999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++.++||+|++ .+++.+||.||+.+....... ......+.+++++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 24599999995 578889999999875321100 0122334456788999999995 5667654 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=356.55 Aligned_cols=214 Identities=21% Similarity=0.314 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888862 24899999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++.++|++|++ .+++.+|+.||+.+...... ... ......++.+.++++.+++. +..++.+ ..|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCH
Confidence 24689999996 48889999999987532110 000 11223345678899999994 5677755 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999995 7899999999999999999999
Q ss_pred CcchH
Q 008669 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 88764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=325.77 Aligned_cols=228 Identities=32% Similarity=0.433 Sum_probs=200.4
Q ss_pred CcceEEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008669 47 DVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 47 ~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
..+.-++.+|+++.|+.+++ ....++++||+++++||.++|+|+||||||||=.+|.+++++ +|+|.++|
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G 347 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDG 347 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECC
Confidence 35667999999999986532 224689999999999999999999999999999999999887 69999999
Q ss_pred EeCCC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 008669 121 HKTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (557)
Q Consensus 121 ~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (557)
+++.. .++++-.|+||| .+.|.|||.|-+.-+.....+ ..+..++.+++.+.|+++||+.... +.
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~R 422 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR----NR 422 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh----hc
Confidence 97531 135688999997 589999999999988776544 4678899999999999999976322 34
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+|++.|||||||++||||++.+|++++||||||+||..-+.+|+++|++|.+ .|.+-++++||. .-+..+||+|+||+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~ 501 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMR 501 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEe
Confidence 7899999999999999999999999999999999999999999999999976 589999999995 78999999999999
Q ss_pred CCeEEEEcCcchHHH
Q 008669 270 GGKTVYFGETSAAFE 284 (557)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (557)
+|+||++|+++++.+
T Consensus 502 ~GkiVE~G~~~~if~ 516 (534)
T COG4172 502 DGKIVEQGPTEAVFA 516 (534)
T ss_pred CCEEeeeCCHHHHhc
Confidence 999999999988754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=393.09 Aligned_cols=249 Identities=19% Similarity=0.239 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+|+.++++.+++... ...+. .++... +....|+|+|++++|+. +...+|+|||++|+|
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~-~~~~~----------~~~~~w--p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPW-QIQET----------APPSGW--PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccc-cccCC----------CCCCCC--CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 467899999999976664321 00000 000000 11235999999999952 224699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|++ |+||||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999986 8999999998643 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.+.++..++ ++.+|+.+|+ .+..||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1385 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 12232 24455555554 3567999986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|||+++|++. ....+|||++|++|+++++|+++++.+
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 5799999999963 356699999999999999999988764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=314.55 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=155.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++||++.+..+....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++| +++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999988321000136999999999999999999999999999999999999886 99999998 589
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHH
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
|++|++.+++ .|++||+.+.... ... ...+.++.+++.+ ..++.+.. .+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHH
Confidence 9999998885 5999999875321 111 1222333333321 12223322 45789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||++||++ ..+.. +|++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4677766789999999996 45665 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=304.22 Aligned_cols=231 Identities=27% Similarity=0.392 Sum_probs=198.8
Q ss_pred eEEEEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
+.|+++||++++. + +.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCH
Confidence 3689999999993 4 5899999999999999999999999999999999998533 3469999999998532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (557)
.+..+...+|.|.=+|..|+.+.|..+...+........+....+++.++.+++++ .+++.+. -++||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHH
Confidence 13457789999999999999999998866533221113456677889999999987 5677665 379999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC--CeEEEeeCCeEEEEcCc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~ 279 (557)
|..|+..++.+|++.+||||-||||..+-+.+.+.++.++..|.+++++||. ..+.++. |++.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy--~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY--QRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH--HHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999998 4678887 99999999999999999
Q ss_pred chHHHHHHhCCCCC
Q 008669 280 SAAFEFFAQAGFPC 293 (557)
Q Consensus 280 ~~~~~~f~~~g~~~ 293 (557)
++...++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888865
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=354.81 Aligned_cols=232 Identities=22% Similarity=0.221 Sum_probs=183.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.+++..++..+. . +... . .....++++|+++.|+ +++.+|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~-------------~~~~--~--~~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P-------------RPQA--F--PDWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c-------------cccc--c--CcCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 467889999998754332110 0 0000 0 0112599999999994 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .+++++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999986 9999999998542 23679999999999886 88887 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
+ . ..++.+.+.++.+++.+..+. ++. ....||||||||++||||++++|++|+||||||+||+.++..+.
T Consensus 418 -~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1 123456788888888754332 221 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 235 ~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
+.|.+..+ .|+|+|+++|++ +..+.||++++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99986644 589999999996 35778999999999999866
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=333.27 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.2
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 008669 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (557)
Q Consensus 87 ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (557)
|+|||||||||||++|+|+++|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999886 9999999987532 2356999999999999999999999986532 2234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008669 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
.+.+++++++++.++|.+..++. +++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 45566789999999998877764 4579999999999999999999999999999999999999999999999764
Q ss_pred -CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 244 -g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999995 6889999999999999999999988764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=308.39 Aligned_cols=174 Identities=38% Similarity=0.561 Sum_probs=149.8
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----c
Q 008669 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~ 127 (557)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 4688998882 356999999999999999999999999999999999999886 99999999875321 1
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++| +++.+|+.+..++. ++.||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 23566666 55667776655553 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999776 89999999996 5778999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=352.63 Aligned_cols=218 Identities=27% Similarity=0.356 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||++...
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 58999999998421 11356999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. +.|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1246999999999999999999999865332 2234555677899999999988777754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +.+ +.|||+++|++|++++.|++++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHH-HhCCEEEEEECCEEEeecCccc
Confidence 99999999999999999999999999999999999999987899999999996 344 6799999999999999998875
Q ss_pred H
Q 008669 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 230 ~ 230 (648)
T PRK10535 230 K 230 (648)
T ss_pred c
Confidence 4
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=386.29 Aligned_cols=244 Identities=26% Similarity=0.399 Sum_probs=190.1
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|.+|++|+.++++.+|..+. ...+. .... . ..|+++||++.|+.+ +++.+|+|+||++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~~~--------------~~~~-~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDDGK--------------KLKD-I-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCCCc--------------cCCC-C-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 578999999999988776432 10000 0111 1 159999999998521 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~-G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
||++||+||||||||||+++|+|+++|+ +|+|++| |.++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999996 9999995 565421 23569999999999986 999999986311
Q ss_pred cC----------CC------------C---------------------C-----CHHHHHHHHHHHHHHcCC-------C
Q 008669 156 RL----------PD------------K---------------------M-----PWSEKRTLVERTIIEMGL-------Q 180 (557)
Q Consensus 156 ~~----------~~------------~---------------------~-----~~~~~~~~v~~~l~~lgL-------~ 180 (557)
.. +. . . ......+.+.++++.+++ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112345666666654 4
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHH
Q 008669 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (557)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~ 259 (557)
+.+||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i- 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI- 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-
Confidence 567888886 5778999999999999999999999999999999999999999999999976 5899999999974 44
Q ss_pred hcCCeEEEeeCC
Q 008669 260 ELFDRLYLLSGG 271 (557)
Q Consensus 260 ~~~D~v~~L~~G 271 (557)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=352.07 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588888872 1599999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHH
Q 008669 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 200 (557)
++.++|+||++ .+++.+|+.||+.................++.++++++.+||. +..++.+ +.||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 4788899999986431110010011223345688999999997 6667654 56999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6899999999999999999988776
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
++
T Consensus 489 ~~ 490 (510)
T PRK15439 489 AI 490 (510)
T ss_pred cC
Confidence 54
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=384.52 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=182.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+|+|++++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999942 2345999999999999999999999999999999999999986 8999999998642
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSg 197 (557)
.++.++||||++.+|+. |++|||.... ..+. +.+.+.++..++ ++.+|+.+|+ ...+|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999987 9999996421 1222 335566666665 3567899987 5678999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|++ +....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999999864 479999999996 34677999999999999999
Q ss_pred cCcchHHH
Q 008669 277 GETSAAFE 284 (557)
Q Consensus 277 G~~~~~~~ 284 (557)
|+++++..
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99988753
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=351.22 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=169.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.|+.++...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999999532111246999999999999999999999999999999999999986 9999999998643
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCcccCCCCHHHHHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-g~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+|.. |+++|+. + ...++.+.+.++.+++.+..+..- |......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999876 8888841 1 112345677888888865433211 1112357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
+||||++.+|++++|||||++||+.++..+.+.+. .++.+|+|+|+++|++. ..+.||+|++|++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 46567899999999963 5678999999999999754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=296.51 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999983 457999999999999999999999999999999999999886 9999999986432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1234777776 89999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ +++.+.+|++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999995 57888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=318.00 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 445899999984 246999999999999999999999999999999999999886 89999987
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerq 201 (557)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875221 11 11223333334332 12333332 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 579999999996 455 579999999999999999987
Q ss_pred hHH
Q 008669 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 664
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=299.79 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998731 1136999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++ .|++||+ ||||||||++||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 246999999998776 5998886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||++ +++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999864 79999999996 56666 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=310.04 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=158.1
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 008669 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------- 125 (557)
.+.|+.+.+. +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4567777763 2357999999999999999999999999999999999999886 8999999976421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 196 (557)
.++.++|++|++.++ ..|++||+.+.... .. ....+.++.+++.+.. ++..+. .+..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCC
Confidence 124689999999887 46999999875311 11 1233455555654322 222222 467899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||||||++|||+|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|+|++||++ +.+ ..+|++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 6777766789999999997 455 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=297.35 Aligned_cols=164 Identities=33% Similarity=0.483 Sum_probs=144.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999873 2356999999999999999999999999999999999999886 999999874 5699
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.++ ..|++||+.+. .++.||||||||++|||+|+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998642 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ . ....+|++++|++|.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999886 58999999996 3 457999999998653
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=348.11 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999998 3467999999999999999999999999999999999999886 899999873 3589
Q ss_pred EEccCCCCCCCCCHHHHHHHHhh-cc-----------CCCC-----------------CCHHHHHHHHHHHHHHcCCCcc
Q 008669 132 YVTQDDNLIGTLTVRETISYSAR-LR-----------LPDK-----------------MPWSEKRTLVERTIIEMGLQDC 182 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~ 182 (557)
|++|++.+++.+||+||+.++.. .+ .+.. ....+.++++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999987521 00 0000 0001224568889999999754
Q ss_pred c-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc
Q 008669 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (557)
Q Consensus 183 ~-~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 261 (557)
. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++ ..+.++
T Consensus 148 ~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 333 457999999999999999999999999999999999999999999864 589999999995 678899
Q ss_pred CCeEEEeeCCeE-EEEcCcchHH
Q 008669 262 FDRLYLLSGGKT-VYFGETSAAF 283 (557)
Q Consensus 262 ~D~v~~L~~G~i-v~~G~~~~~~ 283 (557)
||++++|++|++ ++.|++++..
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHH
Confidence 999999999999 4889887654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=381.26 Aligned_cols=213 Identities=25% Similarity=0.308 Sum_probs=182.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+|+||+++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ . +|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999952 24679999999999999999999999999999999999986 3 8999999998642
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSg 197 (557)
.+++++||||++.+|+. |+||||.... ..+. +.+.++++..+| .+..|+.+|+ ...+|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 24679999999999997 9999995421 1122 345667777766 3467899986 5667999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 4799999999963 45569999999999999999
Q ss_pred CcchHHH
Q 008669 278 ETSAAFE 284 (557)
Q Consensus 278 ~~~~~~~ 284 (557)
+++++.+
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9988763
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=302.97 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=159.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (557)
++++|+++.+. ++.+++ +|+++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 78999999982 344555 99999999999999999999999999999999886 9999999987532 12458
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++|||+++
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865332 1 124567788999998766664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++. . ...+|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-c-cchhhee
Confidence 999999999999999999999999999877778899999999974 3 3446654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=294.83 Aligned_cols=192 Identities=25% Similarity=0.435 Sum_probs=168.7
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCC
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~ 141 (557)
.+..+|+++||.+++||..+|.||||||||||+|+++-+.+|+ +|++++.|++... .+.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4577999999999999999999999999999999999999986 9999999998643 2467999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
. ||++|+.|...++.... .+++..+.|+++++.+. .++ .+..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 99999999877653221 24567788999999764 344 445799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|||+||+.+++.|-++|.++. +++..++.+||++ .+..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999986 5789999999997 577899999999999876
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=347.45 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++||++.|. +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3599999999982 1467999999999999999999999999999999999999886 899999752 46
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhc-c------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMP--------------------WSEKRTLVERTIIE 176 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (557)
+|||+|++.+++.+||.||+.++... + ...... ..+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 99999999999999999999875310 0 000000 00123567888999
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+||.. .++.+ .+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||++ +
T Consensus 152 ~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 55544 5799999999999999999999999999999999999999999998873 5999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEcCcchH
Q 008669 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (557)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (557)
.+.++||+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 78887654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=306.94 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=161.1
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|. ++|... .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999886 99997 777532 13345678899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
+.+....+ .....+. .+.+.+.++|+...++.+ +.||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 223445567877777655 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHh
Q 008669 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (557)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (557)
++..+.+.|.+..+ ++|+|++||++ .++.++||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999996 578889999999999999999999988776654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=342.83 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=176.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
..++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 358999998852 35999999999999999999999999999999999999886 99999999875321
Q ss_pred ---cccEEEEccCC---CCCCCCCHHHHHHHHh-hccCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008669 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP-DK-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (557)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 196 (557)
++.++|++|+. .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++. +.+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 23489999985 4788899888743321 00000 01 12233456678899999995 445664 45799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||||+||++++.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++|||+++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999995 688999999999999999987
Q ss_pred cCcc
Q 008669 277 GETS 280 (557)
Q Consensus 277 G~~~ 280 (557)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=315.05 Aligned_cols=227 Identities=27% Similarity=0.363 Sum_probs=196.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~---- 124 (557)
-|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.++|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 489999999997543 4578999999999999999999999999999999999998752 345899999998731
Q ss_pred -----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 -----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+-.+|+++||+| .+.|-.|+..-+.-..++. .+++.++.++++.++|+.+|+.+-.... +.+|++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1224799999997 5778778888887665543 4567888889999999999998754432 348999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||.||+||+++|++||.||||++||...+.+|+++|++|.+ .|..++++|||. .-+.+++|||.+|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 999999999999999999999999999999999999999999976 599999999995 689999999999999999999
Q ss_pred cCcchHH
Q 008669 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|+++++.
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9988775
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=308.75 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=156.9
Q ss_pred cceeceeEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCC
Q 008669 70 NVLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 70 ~iL~~vs~~i~-----~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (557)
..++|++++++ +||+++|+||||||||||+++|+|+++|+ +|+|.++|. .++|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCC
Confidence 36677777775 79999999999999999999999999886 899999984 5899999988777889
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 224 (557)
|+|++.+...... . ......++++.++|.+..++.+ ..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 1133567889999987777654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE--EEcCcch
Q 008669 225 LDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA 281 (557)
Q Consensus 225 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 281 (557)
||+.++..+.+.|+++++ .|+|||++||++ .++..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999976 589999999995 6788899999999765433 3344444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=344.16 Aligned_cols=211 Identities=25% Similarity=0.317 Sum_probs=173.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.|. +++.+|+|+||++++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3589999999983 1457999999999999999999999999999999999999886 899999752 46
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhc-c------------CCCCCCHH--------------------HHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMPWS--------------------EKRTLVERTIIE 176 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~~~--------------------~~~~~v~~~l~~ 176 (557)
++||+|++.+++.+||+||+.++... + ........ +...++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 00000000 012456677888
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+|+.. .++. ++.|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4554 4579999999999999999999999999999999999999999999876 35999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008669 257 EVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
.+..+||++++|++|+++ +.|+.++..
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 788999999999999976 778877644
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=343.15 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=173.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3456999999999999999999999999999999999999886 899999874 46
Q ss_pred EEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 008669 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++|++|++. +++.+|++|++.+... . . ..+++++++++.+|+. +..++.+ ..||||||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHH
Confidence 999999864 5667899999864211 1 1 1135578899999994 5566644 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++ +++.++||++++|++|+++ +.|++++..
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35999999995 6888999999999999998 788876543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=341.21 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=172.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|..++. .+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 359999999998 3456999999999999999999999999999999999986541 28999999975321
Q ss_pred --CcccEEEEccCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008669 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.++. ..++++++.+.... ....... .+.+++++++++.+||.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999876543 34777776543211 0111111 223456889999999987 667654 569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHh-cCCeEEEeeCCeEEEE
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~ 276 (557)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998765 4699999996 56766 5999999999998765
Q ss_pred c
Q 008669 277 G 277 (557)
Q Consensus 277 G 277 (557)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.30 Aligned_cols=190 Identities=29% Similarity=0.382 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEEccC--ccc--ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 008669 51 RLTWKDLTVMVTLSN--GET--HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~--~~~--~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~ 126 (557)
.++.+||++.|..+. ... ..+++||||++++||+++|+|+||||||||-|+|.|+++|+ +|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhc
Confidence 589999999997642 112 47999999999999999999999999999999999999996 99999999874321
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
. ..+..+++.++|+.+||.. .+++ ++++||||||||++|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHHH
Confidence 1 2345577999999999865 3333 788999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||||+.+|+++++|||+|+||...+.+++++|+++.+ .|.|.++++||. +.+..++|||.+|+.|++++.|+.+++..
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999987 599999999995 68999999999999999999999988754
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=301.01 Aligned_cols=216 Identities=27% Similarity=0.377 Sum_probs=183.9
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---- 124 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---- 124 (557)
..-|+++|+++.+ ++|+||+|+|++|++||-.+|+|||||||||||++++|..+|. +|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcc
Confidence 4569999999998 6789999999999999999999999999999999999999886 999999998632
Q ss_pred --CCcccEEEEccC--CCCCCCCCHHHHHHHHh--hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 125 --LSFGTAAYVTQD--DNLIGTLTVRETISYSA--RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 125 --~~~~~~~yv~Q~--~~l~~~lTV~e~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+++||||.-. ..+.+..+|+|-+.-+. ..........++..+++..+++.+|+.+.+|...+ .||-|
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~G 175 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQG 175 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCHh
Confidence 124679999654 33455678888775432 11112212345566788999999999999998775 59999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||.|||||+++|.+||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+...+++++++++|+++++
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeec
Confidence 999999999999999999999999999999999999999999875 88999999996 789999999999999999998
Q ss_pred cC
Q 008669 277 GE 278 (557)
Q Consensus 277 G~ 278 (557)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 74
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=288.93 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=190.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G-~~~~~--- 125 (557)
..|+.+|+++++ ++..+|+|+||++.+||+-+|+|||||||||+|++|+|..+|. +|++.++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 458999999999 5678999999999999999999999999999999999999886 89999999 44321
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+..||--+|.|..|..+||+|||..+.+...+- .....+.+++++++|...||.+..+...+ .||.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 1245788999999999999999999986432110 01123456789999999999998887665 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++.|++-++.+|++|++|||++|+-.....+.-++|+.++. +++|+++-|| ...+.+++|+|.+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999976 5899999999 57999999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=302.59 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=180.5
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEc-cCCCCCCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~-Q~~~l~~~l 143 (557)
..+.+||||+|++|++++++|||||||||+||+|+|++.|+ +|.|.++|...... -+++++|+ |.-.+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 35899999999999999999999999999999999999986 99999999864321 14566654 445666677
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008669 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
.+.|.+......+ .++.++.+++.+.+.+.++|+...+.++ |.||-|||.|+.||.+|+++|++|||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 7888887765554 5677888899999999999988777644 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHH
Q 008669 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 287 (557)
|||..++..+.+.|++..+ .+.||+++||+. .++..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999976 689999999995 68999999999999999999999998876553
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=371.53 Aligned_cols=237 Identities=24% Similarity=0.281 Sum_probs=187.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++.... . +.. .. .....++++|+++.++.+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~---~------------~~~--~~-~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA---Q------------NPP--LQ-PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc---c------------cCC--cC-CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 578999999999986653211 0 000 00 011259999999998521 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
||.++|+||||||||||+++|.|.++|. +|.+. ..++.++||+|++.+|+. |++|||.|+.. .
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------F 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------c
Confidence 9999999999999999999999999885 77553 123579999999999987 99999999742 1
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008669 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
++ ++.+++++..+ |++..+|.||+ ++.+||||||||++||||++++|+|+|||||||+||+.++.++.
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 12 22344444433 45667899997 46679999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 235 ~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+. ++.+ .+|+|+|++||++. ....+|+|++|++|++++.|+.+++.
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 65 4443 36899999999963 46789999999999999999988875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=368.97 Aligned_cols=236 Identities=23% Similarity=0.297 Sum_probs=188.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++.... + ..+ .. .....++++|+++.++.+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~-~~~---------~~-----~~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P-NPP---------LE-----PGLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c-CCc---------cc-----CCCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 578899999999976543211 0 000 00 011259999999998521 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~-G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
||.++|+||||||||||+++|.|.+++. + |+|.+. +.++||+|++.+|+. |++|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999885 8 899863 468999999999986 999999987431
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008669 161 MPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
+ +++.+++++..+| ++..+|.||+ ++..||||||||++||||+.++|+|+|||||||+||++++.++
T Consensus 706 -d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -D----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -c----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 1 1334445554443 5567899997 4567999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 234 ~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+ .++.+. +|+|+|++||++ .....+|+|++|++|++++.|+.+++.
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 455543 589999999996 357789999999999999999988875
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=336.73 Aligned_cols=203 Identities=23% Similarity=0.309 Sum_probs=169.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 008669 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+||++|++ .+++.+||+||+.+...... .... .....++++.+++.+ ..++.+ .+||||||||++||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 78889999999988643221 1111 123456899999964 456644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEE-EEcCcc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~ 280 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++..+||++++|++ |++. +.|+.+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999873 4 899999995 688999999999985 7876 456544
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=288.20 Aligned_cols=217 Identities=26% Similarity=0.391 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+.......+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4566777776544455688999999999999999999999999999999999999986 99999999986432
Q ss_pred cccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIE--MGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
...++-|+||| ..++.||+.||+..+.......+.+. ..+++...+.++. +||++..++.+|- |||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchH
Confidence 23467899997 46999999999999865422222222 2233334444555 4677888888874 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||-+++++|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||+ ..++.++.+|.++|++|+||.+-
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn-m~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN-MEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc-HHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999999999866 57899999999 47899999999999999999763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=335.52 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=168.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+.+|+ +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 359999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 008669 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
++|++|++ .+++.+||.||+.+..... ..... ..++.++++.+|+.+ ..++.+ ..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 4788899999998864321 11111 123557899999964 456644 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEE-EEcCc
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGET 279 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~ 279 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++ ..+.++||++++|++ |+++ +.|+.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999873 3 899999995 678899999999986 5776 44554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.30 Aligned_cols=199 Identities=24% Similarity=0.284 Sum_probs=172.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.+. +. .|+++|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 4599999999872 22 599999999999999999999999999999999999886 8999986 15
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
++|++|+..+++.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHH
Confidence 899999988888999999998753211 11 134678999999987777755 56999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||+ .++..++||+++|+ |++...|...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999999977 489999999995 67889999999996 4887777643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=342.26 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999873 2346999999999999999999999999999999999999875 89998864 2569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCCHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~ia 206 (557)
+||+|++.+++. |++||+.++........ ....++.+.++++.+++.+..++..| ...+..||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999987642210000 00112456788999998765443221 013468999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|+|+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999964 458899999997
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=313.14 Aligned_cols=216 Identities=30% Similarity=0.399 Sum_probs=183.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..+.|.|+++.|. +.+++|+++||++++|+.+|++||||+||||++++|-.+++++ +|.|.+||++++.
T Consensus 261 g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~ 333 (497)
T COG5265 261 GAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333 (497)
T ss_pred ceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHH
Confidence 3589999999984 5788999999999999999999999999999999999999987 9999999998542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008669 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
.++-||.||||..||.+ |...|+.++..- .+.++..+ .+...++ .+++.+|+.||+.+. .|||||
T Consensus 334 slR~aIg~VPQDtvLFND-ti~yni~ygr~~-----at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSgge 404 (497)
T COG5265 334 SLRRAIGIVPQDTVLFND-TIAYNIKYGRPD-----ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGE 404 (497)
T ss_pred HHHHHhCcCcccceehhh-hHHHHHhccCcc-----ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCch
Confidence 24669999999999987 999999987432 23333322 2233333 467889999998443 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||+++++|+||++||.||+||..+.++|...|++.+ .|+|.+++.|..+ . .--+|.|++|++|++++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-t-i~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-T-IIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-h-ccCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999986 5899999999975 3 345999999999999999998
Q ss_pred chHHH
Q 008669 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 77654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=302.00 Aligned_cols=198 Identities=25% Similarity=0.317 Sum_probs=163.2
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 008669 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-----------~~G~~~~ 124 (557)
|++++|. ..+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|+ ++|++..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 5666662 2235999999 59999999999999999999999999999986 99996 7787642
Q ss_pred C-----C--cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ~-----~--~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
. . ...++|++|...+++. ++.+++.+... ....++.+.++++.+||.+..++. +..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRN-----IDQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1 1 1237899999888875 88888876421 122345678899999998766664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++||++|+.+|+++++||||++||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++.+.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999988889999999995 67888999999995 5565544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=335.97 Aligned_cols=202 Identities=28% Similarity=0.366 Sum_probs=171.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|.++|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 359999999998 3467999999999999999999999999999999999999886 999999742 25
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 008669 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 130 ~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+||++|+. .+.+..|+.+++.. .. .......+.++|+.+++.. ..++.+ +.|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 35566788877632 11 1122356788999999963 566655 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+.++||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 999999995 6888999999999999997 888887653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=361.05 Aligned_cols=243 Identities=22% Similarity=0.316 Sum_probs=187.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++...... +... ........++++|+++.+.. ..+.+|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~-------------~~~~--~~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSI-------------ERRT--IKPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccc-------------cccc--cCCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 57889999999997654421100 0000 00001125999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
||+++|+||||||||||+++|+|.++|. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999886 99999987 4899999998876 5999999986321
Q ss_pred CHHHHHHHHH--HHHHHcCC-CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008669 162 PWSEKRTLVE--RTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (557)
Q Consensus 162 ~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~ 238 (557)
..+..++..+ .+.+.++. ++..+|.+|+ ++.+||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1111111111 12233332 3455788886 567899999999999999999999999999999999999999999997
Q ss_pred HHH--hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 239 ~l~--~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+.. .+|+|+|++||++. . ...+|+|++|++|+++..|+.+++.
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 532 35799999999973 4 4569999999999999999988875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=273.37 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+ +++.+|+++|+++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..++
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTY-----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEE-----CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 4688999987 2346999999999999999999999999999999999999886 999999985 4689
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++| ||+||+||++|||+|+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++ +++.+++|++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999995 67888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=267.65 Aligned_cols=193 Identities=26% Similarity=0.386 Sum_probs=167.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.+.++|++... +++..|-|+|++|.+||++.||||||||||||+..+.|.+.+.-..+|++++|+++.+. ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 46788988665 56789999999999999999999999999999999999998877789999999987542 35
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+++|.++||+.+||+++|.+||.|+. |..+....+++.++..|++.||....+. .+..||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 78999999999999999999999874 3344445677788999999999987776 45679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCCchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~~~i 258 (557)
+|+..|+.++||||+|.||..-+.++.+..-. ....|..+|.+|||. .++
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 99999999999999999999999999998754 445799999999994 444
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=280.36 Aligned_cols=156 Identities=28% Similarity=0.420 Sum_probs=137.2
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEc
Q 008669 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~ 134 (557)
.|+++.+ +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5778877 346789885 899999999999999999999999999999886 9999999863 78888
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
|+.. ||||||||++|||+|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE--cCcchHH
Q 008669 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~~~ 283 (557)
+++|||||+|||+.++..+.+.|+++++++ .|+|++||++ .++.++||++++|+++-.++. |++...+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999999997764 9999999995 678889999999998776655 6665443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=282.18 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEcc-------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 008669 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (557)
Q Consensus 51 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~ 111 (557)
.++++|+++.++.. +.....+|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 47778888777542 123457999999999999999999999999999999999999997
Q ss_pred ceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008669 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (557)
Q Consensus 112 ~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (557)
+|+|.++|+-.... -=.-.+-|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 -SGKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -CceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999999742111 11123557799999999987654 5678899999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.+|-||+-|++.|.|...+|+|||+||-.+-.|+.=+++-.+.++++.++++|+|+++|++ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 56999999999999999999999999999999999999999999999988889999999995 7899999999999999
Q ss_pred eEEEEcCcchHHHHHHh
Q 008669 272 KTVYFGETSAAFEFFAQ 288 (557)
Q Consensus 272 ~iv~~G~~~~~~~~f~~ 288 (557)
++.+.|+++++.+++..
T Consensus 224 ~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 224 QIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999999987765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=332.11 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=170.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----cE
Confidence 469999999988 3467999999999999999999999999999999999999886 999998 432 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 008669 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+||++|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++.+ +.|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 89999985 5889999999998753211 011 1134577889999985 4566655 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEE-EcCcch
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~ 281 (557)
+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+.++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 35999999994 68889999999998 799864 465444
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=330.83 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=165.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
|+++||++.| +++.+|+||||+|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 4577999999999999999999999999999999999998886 999999874 2478
Q ss_pred EEccCCCCCCCCCHHHHHHHHhh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 008669 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 186 (557)
|++|+...+. .|+.+++.-... +.. .......+.+.++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 9998653332 466554431100 000 00000112345788899999996 456765
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++|||. ..+.++||+++
T Consensus 147 ~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 VS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred hh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 54 69999999999999999999999999999999999999999998875 46999999995 68889999999
Q ss_pred EeeCCeEE-EEcCcchH
Q 008669 267 LLSGGKTV-YFGETSAA 282 (557)
Q Consensus 267 ~L~~G~iv-~~G~~~~~ 282 (557)
+|++|+++ |.|+.+..
T Consensus 218 ~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 99999996 66765543
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=345.01 Aligned_cols=223 Identities=27% Similarity=0.443 Sum_probs=203.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..+..+|+++.+... +.+++++|+.+++||+.+++|+|||||||++|+|.|..+|+ +|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 568899999988421 12999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.+||+||.|.+++.+|.||++.+.++++ +++..+.++.++..++.+||.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 2466999999999999999999999999987 56677777889999999999999999775 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.||++||. .+|...+|||+.+|.+|++..-|++++++
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 99999999999999999999999999999999999999888899999999 58999999999999999999999999999
Q ss_pred HHHHh
Q 008669 284 EFFAQ 288 (557)
Q Consensus 284 ~~f~~ 288 (557)
..|..
T Consensus 787 srfG~ 791 (885)
T KOG0059|consen 787 SRYGS 791 (885)
T ss_pred hhcCC
Confidence 77643
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=277.95 Aligned_cols=159 Identities=28% Similarity=0.342 Sum_probs=132.9
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHH
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
..+.+|+|+||++++|++++|+||||||||||||+|.+ . +|++.++|......+..++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH-----------
Confidence 34679999999999999999999999999999999953 2 79999998743222334778877
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTS 223 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~--p~llllDEPts 223 (557)
.+.++.++|.. ..++ .++.||||||||++||++|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 13567778764 2454 3467999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||+.++..+.+.|+++++.|+|||++||++ +++ +.+|++++|++|+..
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNL-DVL-SSADWIIDFGPGSGK 167 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEECCCCCC
Confidence 9999999999999999977899999999996 444 689999999765543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=327.46 Aligned_cols=206 Identities=24% Similarity=0.346 Sum_probs=167.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999883 2346999999999999999999999999999999999999886 899998753 36
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
++|++|+. ...+++.++.........+ ... .+++.++++.+|+.+ ..++. +..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHH
Confidence 89999975 3455666664432111111 111 245778999999974 45554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.+...+.+.|++. .| |||++||++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999998888765 34 999999995 6788999999999999998 7787665433
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=268.87 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=190.2
Q ss_pred EEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 008669 52 LTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-- 125 (557)
++++||++++.... .....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|.+||++...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~D 81 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccc
Confidence 67788888875431 23356899999999999999999999999999999999999996 9999999987532
Q ss_pred ---CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 008669 126 ---SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (557)
+.++|-+++||+. +.|.+.+.+-|....++ ...+....+.+++.+.|+.+||-+. ++- +++.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchh
Confidence 2367899999974 67788888877776544 4456677888999999999998653 332 567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++||||+.+|+|++.||...+||...+.+++++.-++.+ .|.+-|.++.+. .-+..++|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999976 599999999985 68999999999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
+.++..
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 987653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=324.83 Aligned_cols=206 Identities=23% Similarity=0.322 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.| +++.+|+||||++++|++++|+||||||||||||+|+|..+|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 48999999998 3467999999999999999999999999999999999999886 899999873 136
Q ss_pred EEEccCCCCCCCCCHHHHHHHHh------------------------------hcc--CCCCCCHHHHHHHHHHHHHHcC
Q 008669 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLR--LPDKMPWSEKRTLVERTIIEMG 178 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~~lg 178 (557)
+|++|.+......+|.+++..+. .+. .. .....+.+.++.++++.+|
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCC
Confidence 78887654333346666542110 000 00 0000123456888999999
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 008669 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 258 (557)
+.. ++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||++ ..+
T Consensus 148 l~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 148 LDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 963 443 45799999999999999999999999999999999999999999998872 5999999995 678
Q ss_pred HhcCCeEEEeeCCeEE-EEcCcchH
Q 008669 259 FELFDRLYLLSGGKTV-YFGETSAA 282 (557)
Q Consensus 259 ~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (557)
.++||+|++|++|+++ +.|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 8999999999999997 55776543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=347.44 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=158.5
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999986 99999987 48999999999886 99999
Q ss_pred HHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008669 149 ISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
+.|+.... ....++ ..++.++. +.+..+|.+|+ ++..||||||||++||||++.+|+++||||||+
T Consensus 507 I~~g~~~~------~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSYD------EYRYTSVIKACQLEEDIAL--FPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhccccc------hHHHHHHHHHHhHHHHHHh--ccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99874211 111111 11222222 23344677876 567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 224 GLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 224 gLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.++..+.+. ++++. +|+|+|++||++. .+ ..||+|++|++|+++..|+.++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999985 66664 5899999999974 44 569999999999999999988775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=263.95 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~---~~--- 124 (557)
-++.+++|+.| +...-.+||||++.|||+.+|+|+|||||||||++|++++.|+ +|+|.+.-.+ ..
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 47888999888 3456789999999999999999999999999999999999997 8999986532 11
Q ss_pred --C------CcccEEEEccCCC--CC----CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 008669 125 --L------SFGTAAYVTQDDN--LI----GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (557)
Q Consensus 125 --~------~~~~~~yv~Q~~~--l~----~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (557)
. .+...|+|.|+|. +- ..-.+.|-+.-... ......++...++|+++.++.. .+. .
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~---RiD-D 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLD---RID-D 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCcc---ccc-C
Confidence 0 1124699999863 32 22234443322111 1123456778899999988643 222 3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.++.+|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.+.. -|..++++|||. .-+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 6789999999999999999999999999999999999999999999999976 599999999995 56777899999999
Q ss_pred CCeEEEEcCcchHHH
Q 008669 270 GGKTVYFGETSAAFE 284 (557)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (557)
+|+++++|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998877653
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=263.85 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.7
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----Ccc
Q 008669 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (557)
++|+++.+. ++.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|+++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888872 357999999999999999999999999999999999999886 9999999986432 124
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
++.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ +++..+||++++|++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999877789999999995 67888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=264.01 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc---
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~--- 127 (557)
.++.+||+..- .+..++.++||++.+||.+-|.|||||||||||++|+|+..|+ +|+|.++|.++...+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35667777764 4678999999999999999999999999999999999999997 999999998754322
Q ss_pred -ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+.+-|+-.++.+-+.+||.|||.|...+... . ....+.+.++.+||....|.+++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 4567999999999999999999998776432 1 12457788999999999999776 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
|-++..+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999988889999999999864
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=315.98 Aligned_cols=188 Identities=29% Similarity=0.384 Sum_probs=155.7
Q ss_pred EEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 008669 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL 125 (557)
Q Consensus 57 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-----------~~G~~~~~ 125 (557)
+++.| +++..+|++++ .+++||+++|+||||||||||+|+|+|.++|+ +|+|. ++|.+...
T Consensus 79 ~~~~y----g~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRY----GVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEe----cCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHH
Confidence 45555 23346999999 99999999999999999999999999999987 89997 89976421
Q ss_pred -------CcccEEEEccCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008669 126 -------SFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
....++|.+|....+|. .||+|++... +.+.+++++++.++|.+..|+.++ +|
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~L 213 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----EL 213 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 11235665654333332 2999998631 123568899999999888887654 69
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|++|
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999995 6888999999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=322.63 Aligned_cols=240 Identities=25% Similarity=0.311 Sum_probs=192.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+++.+.+|+.+.+..+........+ .........++++|.+++.+. ......|+|||+++++
T Consensus 485 qa~VS~~Ri~~fl~~~e~~~~~~~~----------------~~~~~~~~~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSEELDPDSVER----------------SPDEAGENAIEIKNGSFSWDS--ESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCcccCcccccc----------------CCCCCCCceEEEeeeeEecCC--CCCcccccceeEEecC
Confidence 4678999999999765553321100 011122345899999988643 1234489999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
|+++||+|+-|||||+||.+|.|..+.. +|+|.++|. ++||||.+.++.. ||||||.|+..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~d----- 609 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPYD----- 609 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCcccc-----
Confidence 9999999999999999999999999874 999999875 8999999999987 9999999985431
Q ss_pred CHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008669 162 PWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
+++-+++++...| .+.-.|.||+ ++-+||||||||+++|||+.+|++|++||.|.|++|++...++.
T Consensus 610 -----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 610 -----EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred -----HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 2334445554444 3455688887 55679999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..-.-.-+++|+|++|||. +..+.+|.|++|++|++...|+.+|+.+
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 77554334689999999984 5688899999999999999999999873
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=303.67 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.+ +++.+++|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58899999999 5788999999999999999999999999999999999999886 899987542 368
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (557)
+|++|++...+..||.+.+.-+..-. .+.. ...-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887653210 0000 0001123577888888898876
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 008669 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 184 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 263 (557)
++.++ +||||||.||+||++|+.+|++|||||||+.||..+..-+-+.|++. .| |+|++||| ...+-+.|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 77665 69999999999999999999999999999999999999999999864 56 99999999 789999999
Q ss_pred eEEEeeCCeEE-EEcCcch
Q 008669 264 RLYLLSGGKTV-YFGETSA 281 (557)
Q Consensus 264 ~v~~L~~G~iv-~~G~~~~ 281 (557)
+|+.++.|++. |.|.-+.
T Consensus 219 ~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 219 HILELDRGKLTPYKGNYSS 237 (530)
T ss_pred heEEecCCceeEecCCHHH
Confidence 99999999875 5565443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=323.21 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=193.9
Q ss_pred hhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCe
Q 008669 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (557)
+.|-+|+.|-.+.+++ ......+.. .+..|. ....|+|+|++++|.. +...||||||++|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~--pp~~WP----------~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESR--PPPSWP----------SKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCC--CCCCCC----------CCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 4567888888875555 110111110 122222 2346999999999953 34679999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
.+||+|..|||||||+++|-++..|. +|+|.+||.++.. .+++++.+||||.+|.+ |||.||.=..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~----- 1238 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD----- 1238 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----
Confidence 99999999999999999999999885 8999999998642 25779999999999998 9999986321
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 159 DKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
..++++ +-+.|+..+ ++...|+.|.+ .+.++|-||||.+++||||+++.+||+|||+|+++|+.+-.
T Consensus 1239 -e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1239 -EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred -ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 122322 233333333 34557787765 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.|-+.||+-= +++|||.+.|+.. .+. -+|||+||++|+++++|+|.++.+
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998853 4799999999964 444 499999999999999999998864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=333.71 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=154.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999886 8999863 46999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
|+.|+.... .............++.++.+ .+..++.+|+ ++..||||||||++|||||+.+|+++||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853210 00000000001223333333 2233556664 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.++..+++.+.....+|+|+|++||++ +. ...+|+|++|++|++++.|+.++..
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQV-HV-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999875432223589999999996 34 4679999999999999999988764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=308.80 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=153.4
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--- 124 (557)
....|+++|+++.| +++.+|+|+||+|++|+.+||+|||||||||||++|+|+.....+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 34469999999999 3466999999999999999999999999999999999964111123677765433210
Q ss_pred --C-------C-------cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHHHH
Q 008669 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (557)
Q Consensus 125 --~-------~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-------------------~~~~~ 169 (557)
. . ...++|++|++.+... ++.++.... .. ...+.. ..+++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-NK---DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-cc---cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0113444444322111 111111000 00 000111 23455
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 008669 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (557)
Q Consensus 170 v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 248 (557)
+.+++..+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 67778888885 3345544 579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcch
Q 008669 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (557)
Q Consensus 249 ~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 281 (557)
++||+. ..+..+||++++|++|++. |.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999994 6788999999999999996 6776554
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=263.28 Aligned_cols=190 Identities=25% Similarity=0.288 Sum_probs=135.1
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--E-e--CCCCccc
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--H-K--TKLSFGT 129 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl-~~L~g~~~~~~~~~G~I~~~-----------G--~-~--~~~~~~~ 129 (557)
.+..+|+||||++++||+++|+||||||||||+ ..+.. +|++.+. | . + .......
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 346799999999999999999999999999995 44431 1221110 0 0 0 0001112
Q ss_pred EEEEccCCC--CCCCCCHH---HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHH
Q 008669 130 AAYVTQDDN--LIGTLTVR---ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. ++++||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 334444432 23444544 2222221111 11112233 46789999975 3555 4567999999999
Q ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEE
Q 008669 204 SIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVY 275 (557)
Q Consensus 204 ~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~ 275 (557)
+||++|+.+| +++||||||+|||+.++..+.+.|++++++|.|+|++||++ +++ .+||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 59999999999999999999999999987899999999996 454 699999999 9999998
Q ss_pred Ec
Q 008669 276 FG 277 (557)
Q Consensus 276 ~G 277 (557)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=245.73 Aligned_cols=209 Identities=26% Similarity=0.357 Sum_probs=172.5
Q ss_pred EEEEEeEEEEEEc--cCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 008669 51 RLTWKDLTVMVTL--SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK-- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~--~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~--~~-- 124 (557)
.+..+|+++++.. .++-.-.+|+|+||+++.||++++-||||||||||||+|-|.+.|+ +|+|++.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 4778888887754 2333457999999999999999999999999999999999999987 9999986432 11
Q ss_pred ---------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008669 125 ---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 125 ---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
.+++.+|||.|.-...|..+..|..+-...- .+++.+..+.++..++.++++.+..=.. .|..+
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 1235689999988888888877776655432 2566777788899999999997643322 46689
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||||+|||.|||.++.|-+||+|||||+.||..++..++++|++-+..|..+|=+-|| .+--...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988899999999999 4445667999998763
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=241.13 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.2
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
|+|||+++++|++++|+|+||||||||+++|+|..++. +|+|.+||.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 9999999998643 236799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
|| ...++++++++.+++.+..++.++. ....||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 1235588899999998888888765 447899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=256.69 Aligned_cols=195 Identities=27% Similarity=0.344 Sum_probs=151.2
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCC--C------CceeEEEECCEeCCCCc---
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRL-----ASN--A------FLSGTILLNGHKTKLSF--- 127 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~-----g~~-----~~~--~------~~~G~I~~~G~~~~~~~--- 127 (557)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .|. . ...--|.+|..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998652 110 010 0 01123666665431100
Q ss_pred ----------------------------ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008669 128 ----------------------------GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 128 ----------------------------~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
..+.|..++...+..+||.|++.|...+. ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 01345666666668899999999876532 12456789999999
Q ss_pred Cc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 180 ~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
.+ ..+. .++.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~- 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL- 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-
Confidence 76 3455 3457999999999999999996 799999999999999999999999999988899999999996
Q ss_pred hHHHhcCCeEEEe------eCCeEEEEcCc
Q 008669 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (557)
Q Consensus 256 ~~i~~~~D~v~~L------~~G~iv~~G~~ 279 (557)
..+ +.+|+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 444 679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=262.72 Aligned_cols=214 Identities=25% Similarity=0.422 Sum_probs=178.8
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-- 126 (557)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 445777777542 2589999999999999999999999999999999976664 89999999985432
Q ss_pred ----cccEEEEccC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008669 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (557)
Q Consensus 127 ----~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (557)
...++|||.| ..++..++|++|+.++...+.. . -++.+..++.++++.+.+++.. ..+..+ ..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCC
Confidence 2358999998 5689999999999988222211 1 2455666678889999998853 234444 5699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||.+|||.|||.|..+|++|||||||.|.|.-+..+|.+++++++++|++||++|.+ .+|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-LPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 5899999999999999999865
Q ss_pred cCcc
Q 008669 277 GETS 280 (557)
Q Consensus 277 G~~~ 280 (557)
=+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=269.13 Aligned_cols=203 Identities=28% Similarity=0.351 Sum_probs=168.0
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
....++++|+++.|. +++.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 345799999999983 2378999999999999999999999999999999999998885 899987421
Q ss_pred ccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 008669 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
-.+||..|+. .+.+..|+.|++.-.. +.. .+..+...|..+++.. ...++| +.||||||.|+.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~~-----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGF----PDG-----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhC----ccc-----cHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHH
Confidence 3589999985 4557789999986432 111 1456788999999974 344544 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE-cCcchH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~ 282 (557)
|+.++.+|.+|||||||+.||..+...+.+.|.++ .-|||++||| ...+.+++++++.+.+ ++..+ |..++.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999999887 3599999999 5899999999999998 55443 665443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=242.79 Aligned_cols=165 Identities=27% Similarity=0.356 Sum_probs=130.1
Q ss_pred eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCC
Q 008669 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 73 ~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~------~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (557)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 99999999999999999999987543 1124568777775422 236799999998765
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeC
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDE 220 (557)
|. .. ..++++++++. .+..++ .+..||||||||++||++++ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 02346666665 333444 44679999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||+|||+.....+.+.|+++++ +.|||++||++ .. .+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 9999999999999999999865 68999999996 34 578999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-30 Score=235.26 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.+.++|+++.- -|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 35666766532 37789999999999999999999999999999999865 8999999998532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..++-+|+.|+..-...|.|.+++... .| .++....++++...++|.+...+. ...|||||-|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLH----QP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEE
Confidence 124568999987666678999988653 22 355666788889999998776654 45799999999999
Q ss_pred HHHHHh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 206 a~aL~~-----~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|...+. || ++|+||||.++||...+..+-..|.++++.|.+||++.||. +...+.+|++.+|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecc
Confidence 987764 44 69999999999999999999999999999999999999996 57889999999999999999999
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
.+|++
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 98876
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=238.99 Aligned_cols=183 Identities=20% Similarity=0.332 Sum_probs=129.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEeC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR----------------LASNAFLSG--------TILLNGHKT 123 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~----------------~~~~~~~~G--------~I~~~G~~~ 123 (557)
++.++++++ |++++|+||||||||||+++|++. +.++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 466888887 789999999999999999999843 2222 33 555555321
Q ss_pred ----C-C---CcccEEEEccCCCCCC-CCCHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 008669 124 ----K-L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 124 ----~-~---~~~~~~yv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
. . ..+.++|++|+..+++ ..|..|...+............ .....++. +.+++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc-----ccc
Confidence 0 0 1245889999887776 4677776666554432211000 00011222 22444433344 445
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.||||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +.++|+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888874 6789999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-29 Score=242.76 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=139.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCccc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~~~~~ 129 (557)
.++++|.. .| +++.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...++
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 33 35678999987 89999999999999999999722 222211 11246
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
++|++|+..+++.+|++|++.+....... .+...+.... ...++++.++|.+..++.+ +.||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHH
Confidence 88999998888999999987765433100 0111111010 1245566778877777654 4699999999
Q ss_pred HHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 203 VSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 203 v~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++||++++. +|+++++||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.++||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999974 479999999999999999999999999985 467889999984 68899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=236.41 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=136.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-C------CCcccEEEEccCC---------CCCCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-K------LSFGTAAYVTQDD---------NLIGTLT 144 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~-~~-~------~~~~~~~yv~Q~~---------~l~~~lT 144 (557)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. . .....+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998763 2467777765 21 1 1234689999985 3456789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCCHHHHHHHHHHHHH
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
|.+++......+.... .+....+.+.+.++.+|+...... ..-+..+..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988866432211000 122334678889999998621000 011224568999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 210 ~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+ .+|+++++||||++||+.++..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999993 6788999999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=239.00 Aligned_cols=234 Identities=24% Similarity=0.264 Sum_probs=177.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+|.+|.++|.++...++..+ + .++|+-.+ --.++++|+.|.|.. ..-=+..||++|++
T Consensus 291 ~AqvA~~kiakle~~~~~a~--~-----------~~~q~~p~-----~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD--F-----------PRPQAFPD-----WKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc--C-----------CCCCcCCc-----ccceeeeeeeeccCc----ccceecceeeEEec
Confidence 47789999988876444422 1 12222211 225999999998842 22458899999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||++-|+|.||||||||++.|.|++.|+ +|+|.+||++++.. ++.++-|+-|-++|+.+-
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986432 233455666666666521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
.++.. ...+.++.+|+++.|.|...-.=|+-..-.||.|||||+++-.||+-+-+|+++||=.+.-||.-++.+.+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 123457788888888765332223223456999999999999999999999999999999999999999887
Q ss_pred HH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 237 LR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 237 L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+- .++++|+||+.+|||. .-+..+||++.+++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 64 5667899999999995 468999999999999998654
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=224.42 Aligned_cols=190 Identities=20% Similarity=0.209 Sum_probs=130.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEe-CCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCE----eCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGH----KTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~~ilG~sGaGKSTLl~~L~g~~-~~~~~~~G~I~~~G~----~~~ 124 (557)
.|+++|.. .|. +. ++++|... +|++++|+||||||||||+++|++.+ .+. .+....+.. ...
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 47777776 441 12 55666543 58999999999999999999999643 221 333332211 111
Q ss_pred CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.....+++++|++.... ++.... ..+.++..+.+ .++..++.+..+. .+..||||||||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHH
Confidence 22356889998863211 111111 22222221111 1233334444444 44579999999999
Q ss_pred HHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 205 IALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||++|+. +|+++|+||||++||+.+...+.+.|++++++|.|+|++||++ +.+...+|+++++++|.
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999985 6789999999999999999999999999987799999999996 67888999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=248.26 Aligned_cols=197 Identities=27% Similarity=0.384 Sum_probs=159.3
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++++|+++.-+ .++..|++.|+.+++||-+.|.||||||||||+|+|+|+-+.. +|+|..- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999999864 3468999999999999999999999999999999999998875 7877543 124
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCCHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRv~ia~ 207 (557)
.+-|+||.|.+... |.||-+.+..... ..+ .+.+.++|.++||.+..+..=+ +..-+.||+|||||+++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999998777 9999998753221 122 3457788999999876554221 1134569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.|+++|++++|||.|++||+.++..+.+.+++-. .+.|||-+.|++ .+..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999998742 479999999996 4567777766654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=235.13 Aligned_cols=222 Identities=27% Similarity=0.376 Sum_probs=188.8
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-C--
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-K-- 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~-~-- 124 (557)
....|+++||++.-. .+...+++|||++++||+++|.|=.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 356799999998642 2356899999999999999999999999999999999998775 79999999985 1
Q ss_pred -C---CcccEEEEccCC---CCCCCCCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 008669 125 -L---SFGTAAYVTQDD---NLIGTLTVRETISYSARLRL----PDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (557)
Q Consensus 125 -~---~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 192 (557)
. ....++|||+|. .+.+.+|+.||+.+...-+. ..-+.+.+.++...++++++++... .+. ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 1 124589999985 57889999999988754321 1125567788889999999998733 233 34
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+.||||.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.++.|+.|++++.+ .+|++.++|||.+|.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED-LDEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh-HHHHHHhhheeeeeeCCc
Confidence 6799999999999999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred EEEEcCcchH
Q 008669 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
++...+++++
T Consensus 481 i~~~~~~~~~ 490 (501)
T COG3845 481 IVGIVPPEEA 490 (501)
T ss_pred eecccccccC
Confidence 9988877653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=269.93 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCC
Q 008669 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~---~~p~ 214 (557)
.+...||.|+|.+...-.........+..+++ ++++.+||.+. .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 46678999999887542211111233445556 58889999765 5654 4579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee------CCeEEEEcCcchHH
Q 008669 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 283 (557)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.+|++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999988899999999996 455 8999999996 79999999998865
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=223.39 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=124.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCcccEEEEccCC-----CCCCC
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDD-----NLIGT 142 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~----g~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~-----~l~~~ 142 (557)
..++++.+| +++|+||||||||||+++|. |...++ +|.+..+.... ......+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 55554221111 12235689999987 44455
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH------HHHHHHHHhCCCEE
Q 008669 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLL 216 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~aL~~~p~ll 216 (557)
+|+.|++.+.. . ..+++.+ +. .++.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 68888885421 1 1122232 22 446799999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 217 FLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 217 llDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++||||++||+.++. .+.+.|++++++ |.|||++||++ . ....+|+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 999999999999999 999999999776 89999999995 3 4578999999963
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-25 Score=252.75 Aligned_cols=125 Identities=29% Similarity=0.387 Sum_probs=106.2
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 008669 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llll 218 (557)
+||.|++.|...+. . .....+.++.+||.+ ..+.. +..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999975 34554 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999996 444 679999999 799999999988764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=211.27 Aligned_cols=229 Identities=20% Similarity=0.256 Sum_probs=176.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeC-C----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKT-K----L 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~-~~G~I~~~G~~~-~----~ 125 (557)
+.++||+..+....+ ..+++++||+++..||+-+++|+||||||-..|+|+|..+.+-. +.....+++.+. + .
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 567899988876543 46799999999999999999999999999999999998764211 122344555431 1 1
Q ss_pred C----cccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008669 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ~----~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (557)
+ .+.+++++|++. +-|.-+|...|.-....+..++..+ .-+++++-++|..+|+.+..|-. ..++.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhc
Confidence 1 135789999974 4555555444433222111111111 12356678899999998876643 34788999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|..+|.++.+ +|.||++++||. ..+.+.||++-||.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999976 689999999995 68999999999999999999
Q ss_pred EcCcchHHH
Q 008669 276 FGETSAAFE 284 (557)
Q Consensus 276 ~G~~~~~~~ 284 (557)
.++.+++.+
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999888764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=244.41 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEE
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~---~p~lll 217 (557)
.|||.|.+.|...+. . ..+..++++.+||... .+.. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467778877765432 1 1234578888999753 4443 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchH
Q 008669 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (557)
Q Consensus 218 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 282 (557)
|||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ +.+|++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988899999999996 444 679999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=227.05 Aligned_cols=215 Identities=25% Similarity=0.320 Sum_probs=146.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-c
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-F 127 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-~ 127 (557)
.-.+.+.|+++.+ .++.+++|++|++.+|+-++|+|+|||||||+|++|.|...|.....+...++ ++.... .
T Consensus 73 s~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEK 146 (614)
T ss_pred cccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchH
Confidence 3458999999988 56889999999999999999999999999999999999988742222222221 111000 0
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhh-ccC----------------CCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSAR-LRL----------------PDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 189 (557)
..+-++.+ +.-..+.-+..... +.. ...+..+..+.++.++|..+|.. +..++.
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~--- 218 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK--- 218 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH---
Confidence 00101110 00011111111100 000 00112233345566666666643 445554
Q ss_pred cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 190 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
..++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+.-+ .++++++|. .+.+-..|.+|+.|+
T Consensus 219 --~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 219 --VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLD 293 (614)
T ss_pred --hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheec
Confidence 457999999999999999999999999999999999999999999877632 289999998 578999999999999
Q ss_pred CCeE-EEEcCcchH
Q 008669 270 GGKT-VYFGETSAA 282 (557)
Q Consensus 270 ~G~i-v~~G~~~~~ 282 (557)
+++. .|.|+.++.
T Consensus 294 ~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQY 307 (614)
T ss_pred ccceeeecCCHHHH
Confidence 9994 566776554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=217.24 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=152.3
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++|.++++.+. ---|.==.+++..||+++++||||-||||+.++|+|.+.|+ +|+ .. .-
T Consensus 340 ~~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~ 401 (591)
T COG1245 340 DTLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DL 401 (591)
T ss_pred ceeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cc
Confidence 44578888887762 22455566788889999999999999999999999999997 776 11 13
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
+++|=||--.--...||++.|.-...-....+ -...++++-+.|++..+..+ .+|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHH
Confidence 47888886444455699998876544321111 22456777888988888866 4699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|.+++++++||||++-||.+.+..+.+.|+++.. .++|.+++-||. ..+.-++||+++.+
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999987 589999999996 56777899999885
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=203.45 Aligned_cols=168 Identities=19% Similarity=0.194 Sum_probs=120.5
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCcccEEEEccCCCCCCCCCH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 145 (557)
++++++.+.+| +++|+||||||||||+.+|........ . ....|.. . ......+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888887 889999999999999999974332210 0 0001211 0 1112457788887665541
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCC
Q 008669 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL----~~~p~llllDEP 221 (557)
.. .....+.++++++. .+..++. ++.||+|||||++||+++ +.+|++++||||
T Consensus 84 --------------~~-~~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PL-CVLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cC-CHHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 01 11123456677765 4445554 457999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|+|||+.++..+.+.|+++.++ +.|||+++|++ +++.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999996 56665 49999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=224.55 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=158.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
++..+.++|+++.|+ ++..++++++|-++.++.++++||||+|||||||++.|.+.|. .|.|.-.-+
T Consensus 386 p~pvi~~~nv~F~y~----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYS----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCC----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------
Confidence 345688999999884 2337999999999999999999999999999999999999986 888754322
Q ss_pred ccEEEEccC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 128 GTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 128 ~~~~yv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+++..|+ +.+.-..++-|++.=.. + .....+.+..+|.++||....++. ..++||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHH
Confidence 223444554 33444567777764321 1 122345678899999998543332 346799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE-EEEcCc
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGET 279 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~ 279 (557)
|+.++..|.+|+|||||+|||..+...+-+.|.++ .-+||+++||- -.|.++++++.+..+|.+ .+.|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999999998776 34899999995 689999999999998776 455654
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=211.01 Aligned_cols=177 Identities=23% Similarity=0.253 Sum_probs=118.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-C--CCccc--EEEEccCCCC-CCCCCHHHHH
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------T-K--LSFGT--AAYVTQDDNL-IGTLTVRETI 149 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-------~-~--~~~~~--~~yv~Q~~~l-~~~lTV~e~l 149 (557)
.+++|+|||||||||||++|++.+.+. .|++..++.. . . ..... +.|..|++.. .-.-++++..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999988653 4666544321 0 0 00112 3344443221 0011111110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCCHHHHHHHHHHHHHHhC
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~ia~aL~~~ 212 (557)
. ..+... ....++.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 100 ~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 001111 11123345788888888633211 11111 2368999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 213 ----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 213 ----p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|+++|+||||+|||+..+..+.+.|++++++|.++|++||++ ++.+.+|++++|..
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999994 56789999999973
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=215.99 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=143.8
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...|...|.+..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |+|..-..+...
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 3467888888888 57889999999999999999999999999999999985 333222211110
Q ss_pred cEEEEccC-CCCCCCCCHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 129 TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWS-EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+-.|++-. +.+-.+ +.++.+...-. .+... +..+..+++|..+|..+..-. ...+.||||-|-|+++|
T Consensus 141 ~g~~t~~~~~~l~~D-~~~~dfl~~e~-----~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 141 RGDDTEALQSVLESD-TERLDFLAEEK-----ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALA 210 (582)
T ss_pred eccchHHHhhhhhcc-HHHHHHHHhhh-----hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHH
Confidence 01233332 223333 33333322110 11111 233444558888888754322 13467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE-EEEcCcc
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETS 280 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 280 (557)
|||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++|| +..+-..|..|+.+++-++ .|.|.-+
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 9999999999999999999999999999998876 3799999999 7888899999999987666 3556543
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=211.28 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=158.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..+++++++..-+. .+..+.+|+|++|+.|+-+.|.||||||||+|+++|+|+-+.. +|.+..-... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999987643 1456889999999999999999999999999999999997654 8888653321 1255
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCCHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV------IGNWHLRGISGGERRRV 203 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv 203 (557)
+-|+||.|.+--. |.||-+.|...--.+ ..+....+++.+.|+.++|.|..+.. +--..-..||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999987666 999999886322111 11122235567778888776654322 21123356999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
+.||.+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|..+ ..+.=|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999999998887764 899999999964 5777788888874
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=181.80 Aligned_cols=211 Identities=22% Similarity=0.254 Sum_probs=159.9
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...+++.++.|.|+. .-+++-|+|++++.|..+.++|.||||||||||+|+|-.--. .|.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCcccccc
Confidence 346999999999963 347999999999999999999999999999999999975433 5899999975311
Q ss_pred --CcccEEEEccC----------CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008669 126 --SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 126 --~~~~~~yv~Q~----------~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
......|+.-+ -.+-..+++.+.| |+.. .... +|-+++++.+.++-.. +.+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W-------RmH 146 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW-------RMH 146 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-------EEe
Confidence 11223443221 1223356665544 4321 1111 3345566666664221 335
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.+|-|||+||.|++.|++--++|+|||-|-.||..++..+++.+++-.+ .|.||+..||.- +-+.....+++.+++|+
T Consensus 147 kvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 147 KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGK 225 (291)
T ss_pred eccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCe
Confidence 6999999999999999999999999999999999999999999999876 699999999995 56788999999999999
Q ss_pred EEEEcCcchHHH
Q 008669 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
++-.-+.++..+
T Consensus 226 l~~~l~~~~i~e 237 (291)
T KOG2355|consen 226 LVDNLKYQKIKE 237 (291)
T ss_pred eeeccccchhhh
Confidence 987555554444
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=201.09 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=150.7
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
+..|-++|+++.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+..-| .+-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 44688999999884 4678999999999999999999999999999999999999996 6765433 234
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+||+..|.. .+-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 588888863 45556677777754322 222 2355678889999888885 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.--+..|++|||||||++||..+...+.+.|+++ .-.||+++||.. .+.+.--.+.|+.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999998876 347999999953 34443344555544
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=187.63 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=68.8
Q ss_pred ccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCchHHHhcCC-
Q 008669 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D- 263 (557)
.+.+||||||||+.+++++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+. .++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence 4567999999998877554 4799999999999999999999999999999776 5 5899999995 35667776
Q ss_pred -eEEEeeCCe
Q 008669 264 -RLYLLSGGK 272 (557)
Q Consensus 264 -~v~~L~~G~ 272 (557)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=188.99 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=109.9
Q ss_pred eeceeEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCC
Q 008669 72 LEGLTGYAEPG-TLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (557)
Q Consensus 72 L~~vs~~i~~G-e~~~ilG~sGaGKSTLl~~L~--------g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (557)
.-++|+++.+| ++++|.||||||||||||+|+ |...|. . ....++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~------------~~~~~~~~~~~~~~--- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---A------------EGSSLPVFENIFAD--- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---c------------ccccCcCccEEEEe---
Confidence 45899999999 589999999999999999998 332221 0 00123343333111
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 008669 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 222 (557)
++..+..+. ..+.+|+||||++.|+++ +.+|+++++|||+
T Consensus 79 ----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 111111111 223599999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|||+..+..+. ..++.+.+.|.++|++||+ .++.+++|++..|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 4688887778999999998 3678999999999999998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=197.69 Aligned_cols=198 Identities=23% Similarity=0.269 Sum_probs=156.3
Q ss_pred ceEEEEEeEEEEEEccCcccc-cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008669 49 SARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
+-.+++.++++.+. ... +++.+++..++.-+-.+++|+||+||||++|++.|-..|. .|-+.+.+ +
T Consensus 360 ~p~l~i~~V~f~y~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------r 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------R 426 (582)
T ss_pred CCeeEEEeeeccCC----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------c
Confidence 44689999998774 233 7999999999999999999999999999999999988774 78776543 3
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+++|-.|...=+-.+.|.+-- +..+.+ | +.++ +.+++.+..+||+.- +.. ...+||||||-||++|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFA 494 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHH
Confidence 5688999975433344554433 333332 2 2233 346677888999742 222 2457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
.....+|.+|+|||||+.||..+-..+.+.|+.+ +-.||++||+ .+.+...|+.+.+.++|++.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998887 3479999999 578999999999999999863
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-21 Score=196.22 Aligned_cols=168 Identities=29% Similarity=0.445 Sum_probs=130.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------------CC-------CCc----ccEEEEc
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------------TK-------LSF----GTAAYVT 134 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-------------~~-------~~~----~~~~yv~ 134 (557)
.++|++++|+|+||-||||-+|+|+|.+.|+ =|+ .++.+ .. ... .+.-||.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN---LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 5789999999999999999999999999886 232 12211 00 000 1112333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
--|..+.. ||+|-|.-. +.+-..+++++.++|++..|+.+ ++|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 33344444 777766422 11235788999999999988866 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++++|||||-||...+....+.++++++.+++||++-||. .-+.-++|-|.++.+
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999998899999999995 456667898888874
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=173.64 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 195 LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 35678999999974
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-20 Score=191.76 Aligned_cols=192 Identities=23% Similarity=0.316 Sum_probs=140.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|.++|+-+..+ ....+...+||.+++|--+.|.||||||||+|.++|+|+-+-. .|... .....++
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~------~P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLS------IPRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeee------cCCCcce
Confidence 478888876553 3456889999999999999999999999999999999997642 44432 2233568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCCHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSAR---LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSgGerqRv 203 (557)
-|+||.|.+-.+ |.||-+-+.-. ++ .++.++ +....+|+.+.|++....-.|= ....-||||||||+
T Consensus 548 FYIPQRPYms~g-tlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 548 FYIPQRPYMSGG-TLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred EeccCCCccCcC-cccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 999999987643 77877655311 11 012222 3355667777776654443331 12235999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
++||.+.++|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+ ..++-.+++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 999999999999999999999999999988887765 4899999999986 355434333
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=211.05 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEE
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFL 218 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llll 218 (557)
.|||.|.+.|.... .+-.+.-+.|..+||... ..|. ....|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl---~LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYL---PLGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCee---eCCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 46777777765221 122445678888999643 2232 3457999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| ++|+|++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999995 577889999999 4689999999998764
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=193.01 Aligned_cols=128 Identities=31% Similarity=0.448 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llll 218 (557)
.|||.|...|.... + .-.+.-+.|..+||.-. .+|. ....|||||.|||-+|.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 46777777776432 1 12344567778898632 2342 44579999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
||||+||-.....++++.|.+|.++|.|||++-|+. ++.+.+|.|+-| .+|++++.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999995 688999999999 4689999999999865
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=175.62 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=106.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.+.... .+++|.+.+|+.+|+.||
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a~----~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCAS----SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEecC----ccCcccceEEEeccchhc
Confidence 45788887765 79999999999999999999988542 11234332211 366777789999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
+.++... ...+ .+++.++++.+++ .+|+++++|||++|+|+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9775321 1222 2456777766542 699999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhc--CCeEEEe
Q 008669 229 AAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL 268 (557)
Q Consensus 229 ~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 268 (557)
.+..+. ..++.+.+.|.|+|++||++ +.+... .++|..+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 998775 47888877899999999996 444443 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=179.08 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=115.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE-EEccCCCCCCCCCHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~ 146 (557)
.+.+.+|++++..+|++++|.||||+|||||++.++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999997210 011223 5555432211
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDEP--- 221 (557)
.++++++.+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344455665332 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|++||+...... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3355544 58999999996 57899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=179.06 Aligned_cols=185 Identities=26% Similarity=0.348 Sum_probs=138.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEeCCCCcccEEEEccCC-CCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDD-NLIG 141 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~-----~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~-~l~~ 141 (557)
...+|+|||++++||++++|+|+|||||||||++|.|.... ..+.+|.|.+--.. ..+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 35799999999999999999999999999999999987421 11247777653211 224555542 2234
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
.-|+.|.+.- .... .....++|.+.||.+..- -....+.||-|||.|..||.++...|.+++.||-
T Consensus 469 ~~tilehl~s-----~tGD------~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5567776531 1111 123567889999975321 1224568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhc-CCeEEEeeCCeE
Q 008669 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKT 273 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~i 273 (557)
.+.||+.++..+.+-|.++++ .|.|++++||+| +.+..+ =|+++++.=|.+
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeecccc
Confidence 999999999999999999987 599999999997 455555 588888765554
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-19 Score=165.49 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+||+||+||+++|++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|++||++ +..+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 389999999999999997 7899999999999999999999999998866689999999995 4567899999996
Q ss_pred C
Q 008669 270 G 270 (557)
Q Consensus 270 ~ 270 (557)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=171.99 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.|||||+||+++|++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 789999999963 568999999998
Q ss_pred CCe
Q 008669 270 GGK 272 (557)
Q Consensus 270 ~G~ 272 (557)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-18 Score=194.02 Aligned_cols=136 Identities=25% Similarity=0.387 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHhhccCCCCC-C-----HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 008669 140 IGTLTVRETISYSARLRLPDKM-P-----WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~-~-----~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 212 (557)
+..+||.|.+.|...+..+... . ..+..++++ .++.+||.+. .|+.+ ..|||||+|||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 4568999999996544322100 0 013344554 6888899765 56654 46999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 213 p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
| ++|+|||||+|||+..+..+.+.|++++++|.|||+++|++ +++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999988899999999996 455 469999999 999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=191.77 Aligned_cols=135 Identities=27% Similarity=0.355 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 008669 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 213 (557)
..|||.|.+.|...+........ .+..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999998866532210000 1122222 34677788654 4553 4579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 214 --~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
++|||||||+|||+.+...+.+.|++++++|.|||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999995 455 589999999 899999999988764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-18 Score=166.56 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=104.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHh
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA 153 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~ 153 (557)
..++++.+|++++|+|||||||||||++|++..-.. ..|... ......++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~~~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------PAESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------cccccccCCcCEE---EEEecCccc-----
Confidence 345555689999999999999999999999542110 122110 0011223332221 111111111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008669 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
.+. ..+.++++++| +..+.+++.+|+++++||||+|+|+.....+
T Consensus 85 -----------------------------i~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 011 11235666655 6666788899999999999999999998887
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 234 ~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.. +++.+.+.+.++|++||++ ++.+.+|++..++.|++...++..+
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 65 5677777789999999984 5678899999999999988876544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=163.29 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC-
Q 008669 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 262 (557)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchhc
Confidence 448999999999999985 7999999999999999999999999997752 355555553 4566766
Q ss_pred --CeEEEeeCCeE
Q 008669 263 --DRLYLLSGGKT 273 (557)
Q Consensus 263 --D~v~~L~~G~i 273 (557)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-18 Score=172.08 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=150.8
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCC
Q 008669 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTK 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~---~~~~~~~G~I~~~G~~~~ 124 (557)
..+.|.++|.+.+. .++.++.|-|+.|-.|..++++||||-||||||+.|+.+- +| .=+|+++.+.+.
T Consensus 261 na~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvv 331 (807)
T KOG0066|consen 261 NAMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVV 331 (807)
T ss_pred hcccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeee
Confidence 34678888888776 4678999999999999999999999999999999999873 33 234555443210
Q ss_pred ------------CCcccEEEEccCC-----CCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 008669 125 ------------LSFGTAAYVTQDD-----NLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186 (557)
Q Consensus 125 ------------~~~~~~~yv~Q~~-----~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 186 (557)
...++...+-.++ .--...|+.|-+.-. ..++. +.....+.++.++|.-+|.+.-...
T Consensus 332 ad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~- 407 (807)
T KOG0066|consen 332 ADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE- 407 (807)
T ss_pred ecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc-
Confidence 0011111111111 011334666655432 22321 1122334667788888888653222
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.....+|||-|-||++||||...|-+|.|||||+.||-....-+-++|+.+. +|.++++||. ..+...|..|+
T Consensus 408 ---rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdII 480 (807)
T KOG0066|consen 408 ---RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDII 480 (807)
T ss_pred ---CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHh
Confidence 1334699999999999999999999999999999999999999999998885 6999999995 68899999999
Q ss_pred EeeCCeEEE-EcC
Q 008669 267 LLSGGKTVY-FGE 278 (557)
Q Consensus 267 ~L~~G~iv~-~G~ 278 (557)
.|++.++-| .|.
T Consensus 481 HLD~qkLhyYrGN 493 (807)
T KOG0066|consen 481 HLDNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhhhcch
Confidence 999888754 354
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=155.71 Aligned_cols=135 Identities=20% Similarity=0.265 Sum_probs=98.8
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE-EEEccCCCCCCCCCHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-AYVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~-~yv~Q~~~l~~~lTV~ 146 (557)
++.+.+|+++++++|++++|+||||+||||+++++++..-- .++ .|| +..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------a~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------AQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------HHcCCCc---chhhcCccCh
Confidence 45689999999999999999999999999999999876311 111 133 3334556777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 226 (557)
|++... ++..+..++ ..+.+|+|++|+ ..+.+++.+|+++++|||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 766322 122211122 224589999975 55567889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhCCCEEEEEeCCC
Q 008669 227 SAAAFFV-TQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 227 ~~~~~~i-~~~L~~l~~~g~tvi~~~H~~ 254 (557)
+.....+ ...++.+.+.|.++|++||+.
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 9876665 456777877899999999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=153.51 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=108.3
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+.+|++++.++ ++++|.||||||||||||.+++..-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999887 99999999999999999999875321 11 12222212245677754 5677777776
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH--HHHHHHHHHHHHHhCCCEEEEeCC---CC
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG--GERRRVSIALEILMRPRLLFLDEP---TS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~ia~aL~~~p~llllDEP---ts 223 (557)
+..+. |- .|.++++-+...+.+|+++++||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64321 11 222333333344579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++|.... ....++.+.+. +.++|++||+. ++.+++|++..+++|++...+..+++.
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8887552 23445555555 89999999994 678899998888899988877666543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-15 Score=150.51 Aligned_cols=138 Identities=28% Similarity=0.320 Sum_probs=93.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
.-++|+||||||||||+++|+|.+.++ +|+|.++|+++... .+.++++||.+ +.+.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999986 99999999875311 12356777754 3334444433100
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
..|+ .......+|+++++|||++ ...+..+
T Consensus 183 ---------------------------------------~~~~-----~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEGM-----MMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHHH-----HHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 0011 2223336999999999974 3334455
Q ss_pred HHHHHhCCCEEEEEeCCCchH-H-----------HhcCCeEEEeeCCeEEEEcCcchH
Q 008669 237 LRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 237 L~~l~~~g~tvi~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
++.+ +.|.++|+++|++..+ + ..+|||+++|++|+ ..|.++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5554 4699999999985321 2 26799999999887 55665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-15 Score=151.38 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=137.2
Q ss_pred ccccceeceeEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCC
Q 008669 67 ETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~G-----e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~ 141 (557)
+.+.-+-+..+.|+.| |++..+|+||.||||++++++|+++|+ ..|+|-. -.++|=||...--.
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~ 415 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKR 415 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCccc
Confidence 3455667777777776 578999999999999999999999886 1333321 24678888755444
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
.-|||+.+.-- .+ +.-...+.+.++++-+.+++..|..+ .+|||||.|||++|..|-..+++++.|||
T Consensus 416 ~~tvR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 416 EGTVRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred cchHHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 55999876432 11 01122356778888888888877755 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 222 TSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.+-||++.+...-+.+++.- +.++|-.++.||.. -.--++||+++..
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 99999999999999998864 46799999999953 3445789988764
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-15 Score=142.04 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+++
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 458888776433332 23499999999999999999887765 556777764 89999999995 57888876444444
Q ss_pred CeEEE
Q 008669 271 GKTVY 275 (557)
Q Consensus 271 G~iv~ 275 (557)
+++..
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 54443
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=142.05 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC-
Q 008669 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 262 (557)
..+|.||+|++.||+.|+ .+|+++++|||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhhhc
Confidence 468999999999999886 799999999999999999999999988764 45789999985 3455543
Q ss_pred -CeEEEeeCCeE
Q 008669 263 -DRLYLLSGGKT 273 (557)
Q Consensus 263 -D~v~~L~~G~i 273 (557)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-15 Score=146.81 Aligned_cols=170 Identities=23% Similarity=0.329 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhh
Q 008669 384 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM 461 (557)
Q Consensus 384 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~~~~-~~~~~er 461 (557)
+|++.+++|+++..+|||.+. ...++..++.++++|.+|.+++++.++. ++.+++++.+....+...... .....||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988544444 777777777766665444433 6778899
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008669 462 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 541 (557)
Q Consensus 462 ~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~ 541 (557)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++...+..+++.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 77888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 008669 542 FLMGIITGAGIQVSV 556 (557)
Q Consensus 542 ~~~a~~~~~~~~~~~ 556 (557)
...+..+.+.+..++
T Consensus 158 ~~~~~~~~~~~~~~~ 172 (210)
T PF01061_consen 158 FRDASAISSLILLLL 172 (210)
T ss_pred hhhhhhhhhhccccc
Confidence 999999888776653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-14 Score=139.18 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008669 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 168 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 344555655555332 59999999999997664 46789999999999999999999999999864
Q ss_pred CCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 244 g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999994 6889999888764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-13 Score=129.93 Aligned_cols=128 Identities=25% Similarity=0.235 Sum_probs=86.1
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCC-CCCHHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG-TLTVRE 147 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~-~lTV~e 147 (557)
+=+|+++.=..+.+++|.||||+|||||||.++. .+.. .|..... ....++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a------~~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPA------DSATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEc------CCcEEeeeeeeeeeeCCccChhh
Confidence 4445554322238999999999999999999983 2321 4544322 1134677777532111 111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++| .-|-||++++++++.+|+++|+|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 35679999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 008669 226 DSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (557)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~ 254 (557)
|+.....+ ...++++.+. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99865555 5688888764 35899999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=157.95 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=90.4
Q ss_pred eeEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcccEEEEccCCC-CCCCCCHHHHHHH
Q 008669 75 LTGYAEPG-TLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIGTLTVRETISY 151 (557)
Q Consensus 75 vs~~i~~G-e~~~ilG~sGaGKSTLl~~L~g~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~-l~~~lTV~e~l~~ 151 (557)
+|+.+.++ ++++|.||||+|||||||+|+|.. .+. .| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCcccccc---chhhee-
Confidence 78888887 999999999999999999999872 221 22 13333321 111 111110
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.. +... + .+. . ..+.+|+|++++..|++.+ .+|+++|+|||++|+|+....
T Consensus 371 -~~------i~~~---~---si~----------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---Q---SIE----------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---h---HHh----------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0 000 0 2245999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhCCCEEEEEeCCC
Q 008669 232 FV-TQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 232 ~i-~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+ ..+|+.+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 99 577888888899999999995
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-13 Score=118.00 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=59.3
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~l 143 (557)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+... ..+..+|++|+ +|+.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 5889999987421 22446777777 5544
Q ss_pred CHHHHHHHH
Q 008669 144 TVRETISYS 152 (557)
Q Consensus 144 TV~e~l~~~ 152 (557)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=128.38 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=90.4
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~-~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
+.+.+|+++.+.+|++++|.||||+||||+++++++. +.+. .|....... -.++|..|- +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~a~~------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVPASS------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEEcCc------eEEeccceE---EEEecCcc
Confidence 5689999999999999999999999999999999984 3332 555432210 123333321 11111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 23444554444556789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCchHHHhcC
Q 008669 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 262 (557)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777765 5677777775 89999999995 344443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=134.03 Aligned_cols=172 Identities=27% Similarity=0.336 Sum_probs=120.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEEC------CEeCCCCc--------c---cEEEEccCCCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLN------GHKTKLSF--------G---TAAYVTQDDNLI 140 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~--~~G~I~~~------G~~~~~~~--------~---~~~yv~Q~~~l~ 140 (557)
.||++.+++|.||-||||-+++++|.++|+.. ..+-.+-+ |..+.... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999988620 01111100 00000000 0 001222211111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008669 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
. .+|.+++.- ...++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.+++.+||
T Consensus 178 k-~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 133333321 1122345677888888888777654 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|.+-||...+..-...++.+...++-||++.||. +-..-+.|-+.+|..
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 9999999999999999999988889999999995 456667888888874
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=127.94 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPt-----sgLD~~~~~~i~~~L~~l~~ 242 (557)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=127.52 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=104.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CEe-CC--CC---cccEEEEccCCCCCCCCCHHHH
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GHK-TK--LS---FGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~--G~~-~~--~~---~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+.+||.++|+||+|+|||||++.|.+..... .....+++- |++ .. .. ...+-.+.+-+. +..+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 457899999999999999999999999877542 011222221 211 00 00 011222222221 11111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcC------------CCccccccccCcccCCCCHHH--------HHHHHHHHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMG------------LQDCADTVIGNWHLRGISGGE--------RRRVSIALE 208 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~~~~vg~~~~~~LSgGe--------rqRv~ia~a 208 (557)
...... ..+.++... ..| +....++..+. ....+|||+ +||+++||+
T Consensus 85 ~~~~~~-----------~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~ 151 (249)
T cd01128 85 VQVAEM-----------VLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARN 151 (249)
T ss_pred HHHHHH-----------HHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcC
Confidence 110000 000011110 001 12233444443 445689999 999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 152 ~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 152 IEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9999999999 999999755543 44 5555546789999999963 4788999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-12 Score=142.31 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+| .+...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 89999999996 345789999999
Q ss_pred eCCe
Q 008669 269 SGGK 272 (557)
Q Consensus 269 ~~G~ 272 (557)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=131.35 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=113.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C------C----CcccEEEEc
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~---~------~----~~~~~~yv~ 134 (557)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998876 89999976532 1 0 124578887
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC-HHHHHH-HHHHHHHHhC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS-GGERRR-VSIALEILMR 212 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqR-v~ia~aL~~~ 212 (557)
+.+. ++.+-..-+. .--.+.|.+..-|- |..+- ..+++ --|-+| +++
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~rEisl------- 269 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLM---MDSVTRVAMAQREIGL------- 269 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEE---EeChHHHHHHHHHHHH-------
Confidence 6433 1211111000 00112223322232 11110 01121 111111 111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 213 PRLLFLDEP--TSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 213 p~llllDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+.|| |+|+|+.....+.++++++.. +|. ||++.+||.. ..+||++..+.+|+++.+++..+
T Consensus 270 ----~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 ----AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ----hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 12454 679999999999999999974 575 9999999964 37899999999999999998653
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-12 Score=147.63 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||++ +.....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999988864 6777777889999999994 3344445554443 45
Q ss_pred eEEEE
Q 008669 272 KTVYF 276 (557)
Q Consensus 272 ~iv~~ 276 (557)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=119.68 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=92.8
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTL-l~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
-+++|++++|.|+|||||||| ++.+.+..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 379999999999999999999 68888765431 123455532 25556555543332
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgL----D~~ 228 (557)
.. .++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~~-----------~~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 YD-----------INKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred Cc-----------hHHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 11 1111111 10000010 1 136777655544444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEee
Q 008669 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (557)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 269 (557)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998888887776654310 1234456677665
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=137.68 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 193 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+| .+..++|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3579999999999999997 5899999999999999999999999999965 69999999997 356899999999
Q ss_pred eCCe
Q 008669 269 SGGK 272 (557)
Q Consensus 269 ~~G~ 272 (557)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=147.26 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh
Q 008669 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 260 (557)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+...|++|+++||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 467899999999999999986 7999999999999999999999999999988899999999996 67889
Q ss_pred cCCeEEEeeCC
Q 008669 261 LFDRLYLLSGG 271 (557)
Q Consensus 261 ~~D~v~~L~~G 271 (557)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=131.83 Aligned_cols=137 Identities=24% Similarity=0.379 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH------HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 008669 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVER------TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 212 (557)
+..|++.|.+.|...+.+... ...-.+..+.+ .|..+||.-. .++ ....|||||.||+-||..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R-----~a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSR-----SAGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccc-----cCCCcChhHHHHHHHHHHhccc
Confidence 456788898888876653221 11111112222 3444577542 222 3346999999999999999876
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008669 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 213 p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
= =+++||||+-||-+..-.++++.|++|++.|.|+|++.||+ +....+|+|+-| ++|+|+++|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 4 47899999999999999999999999999999999999994 688999999998 5799999999999874
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-12 Score=139.34 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.5
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 008669 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~----------~~p~llllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 259 (557)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++ +..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34679999999999999887 599999999998 789999999999999998 589999999996 356
Q ss_pred hcCCeEEEeeC-CeE
Q 008669 260 ELFDRLYLLSG-GKT 273 (557)
Q Consensus 260 ~~~D~v~~L~~-G~i 273 (557)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=112.61 Aligned_cols=146 Identities=24% Similarity=0.220 Sum_probs=96.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (557)
++.|.||+|+|||||.--++-.... . | +.+.|+.=+ .|..+.+.....+. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~----~------g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA----R------G-------EPGLYVTLE------ESPEELIENAESLG----WDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH----C------C-------CcEEEEECC------CCHHHHHHHHHHcC----CCh
Confidence 3679999999999988765421110 1 1 224455421 25555554433321 111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHH
Q 008669 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVT 234 (557)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD---~~~~~~i~ 234 (557)
++ +...|+....+. .+..+|+|++| +.........+|+++++|||++.+| ......+.
T Consensus 54 -------~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~ 120 (187)
T cd01124 54 -------ER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIR 120 (187)
T ss_pred -------HH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHH
Confidence 11 122343333332 34568999998 4455555667999999999999999 88888889
Q ss_pred HHHHHHHhCCCEEEEEeCCCch--------HHHhcCCeEEEee
Q 008669 235 QTLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H~~~~--------~i~~~~D~v~~L~ 269 (557)
+.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 121 ~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 121 RLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9999998889999999998542 2678899999887
|
A related protein is found in archaea. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=118.19 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 3457999999999999988776 89999999999999999999999988876678999999997
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=115.86 Aligned_cols=134 Identities=21% Similarity=0.201 Sum_probs=88.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
.+.+-+|+++..++|++++|.||||+||||+++.+++..-.. ..| .........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999998753210 011 111000011111 122222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++.. ++| ..|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445554444555789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 008669 226 DSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (557)
Q Consensus 226 D~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~ 254 (557)
|+.....+... ++.+.+. +.++|++||++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 99999988888 7778765 89999999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-11 Score=116.03 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
..+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 35999999999999999999999999995 44444 345666666666789999999983 45678999999999
Q ss_pred CeEEEE
Q 008669 271 GKTVYF 276 (557)
Q Consensus 271 G~iv~~ 276 (557)
|++++.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-10 Score=135.92 Aligned_cols=77 Identities=31% Similarity=0.327 Sum_probs=68.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008669 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 191 ~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..++..+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 45679999999 55566678899999999999999999999999999999877788999999995 46789999
Q ss_pred EEEee
Q 008669 265 LYLLS 269 (557)
Q Consensus 265 v~~L~ 269 (557)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=101.46 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
...|.||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++.|.-+|+.||.|.
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 4579999654444333 4567899999999999999999999999999999999999999983
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=134.32 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=70.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 008669 191 HLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~--------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
.++.|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||+++||.. .....+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 567899999999999999996 8999999999999999999999999999988899999999984 4555666
Q ss_pred CeEEEeeC
Q 008669 263 DRLYLLSG 270 (557)
Q Consensus 263 D~v~~L~~ 270 (557)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777664
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=119.76 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=116.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++-++++..+. .+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC---------
Confidence 45555555442 235688885 999999999999999999999999999998775 6766665542
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~- 210 (557)
..+|+|.+.... ..-++.+. ..+ ....+-|.|+|+|+..+.+.+
T Consensus 194 ----------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 194 ----------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred ----------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 136666654221 11122110 111 123568999999999998888
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 211 ------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
.++-++++|+||+..|+. .++...+.+.-..|.+..+.+|. +.+. +|.-...+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~---ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLL---ERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHH---HHhccCCCcceEEEEEE
Confidence 789999999999999996 55555666655458888888885 2344 44444578888666543
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=124.51 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=60.2
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH---------hcCCeEEEeeCCeEEEEcC
Q 008669 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 210 ~~~p~llllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 278 (557)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++. +.||++++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999974 443 6899999999999876664
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-10 Score=136.49 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred cccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 008669 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (557)
Q Consensus 184 ~~~vg~~~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H 252 (557)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 33579999999 99999999999999999999999999999999999988732 4789999999
Q ss_pred CCchHHHhcC
Q 008669 253 QPSSEVFELF 262 (557)
Q Consensus 253 ~~~~~i~~~~ 262 (557)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 95 5676665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=116.84 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=94.6
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-cccEEEEccCCCCCCCCCHHHHHHHH
Q 008669 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (557)
Q Consensus 75 vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (557)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+.... .... ...+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 55678899999999999999999999999998775 5666664321 0100 011111111000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 008669 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 232 (557)
. + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 --------------------------------~--~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 --------------------------------Q--G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred --------------------------------C--C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 000111 1234556778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 233 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
..+.++.+...+.+++.++|..+ +....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777777543346799999964 56779999999999988888777654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-10 Score=102.59 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
.+.++.++...+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888889999999999999994 555555666666666665579999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=128.69 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=66.6
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEeCCCchHHHhc
Q 008669 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 261 (557)
Q Consensus 191 ~~~~LSgGerqRv~i------a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~ 261 (557)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++... .. | .++|++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 466899999999975 589999999999999999999999999999998644 33 3 4899999996 35689
Q ss_pred CCeEEEee
Q 008669 262 FDRLYLLS 269 (557)
Q Consensus 262 ~D~v~~L~ 269 (557)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-09 Score=102.86 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=98.8
Q ss_pred cceece-eEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g-~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
.-|+.+ .+=+++|.++.|.|++|+|||||...++- ... +| +.+.|+..+. +..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g-------------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----QG-------------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----CC-------------CEEEEEEcCC------CHHH
Confidence 345554 55699999999999999999999998852 111 11 2355665532 3333
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC-
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG- 224 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~--~p~llllDEPtsg- 224 (557)
.+.-...+. +.. ++.+. .|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 333222221 110 11100 011111111111 112356788999999999997 9999999999965
Q ss_pred --CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEee
Q 008669 225 --LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (557)
Q Consensus 225 --LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 269 (557)
.|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 44555556666677777789999999998642 1456667777776
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-09 Score=129.98 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.0
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 56689999999999999985 57799999999999999999999999999865 478999999964 457899998
Q ss_pred Eee
Q 008669 267 LLS 269 (557)
Q Consensus 267 ~L~ 269 (557)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.7e-09 Score=111.22 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=95.9
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
.++++.+..+++|++++++||||+||||++..|++.+... .|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999876432 231 2578888875 346899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTS 223 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~ia~aL~~~p-----~llllDEPts 223 (557)
.+.+.... ++........+......++.+.....|. ..+.+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98776542 1111111223334445667665444443 22222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 008669 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (557)
+ ..+.+.++.+...+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 34555556665556665556653
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=98.14 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+++++|..+|+++++|||. |..+...++ +.+..|..++.++|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 655433332 34567999999999964 456789987764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=99.71 Aligned_cols=135 Identities=29% Similarity=0.434 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
|.+..|+||+|+|||||.-.++--.. +|.=++.+ ... .....+.|+.=++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed~---------------------- 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAEDP---------------------- 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCCC----------------------
Confidence 67899999999999999988863221 22211111 111 11234556553321
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------aL~~~p~llllDEPts- 223 (557)
..+..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 53 --~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 53 --REEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred --HHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 2223344555555555443333221 1244555554433 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 008669 224 -----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~ 254 (557)
.+|+.....+++.|+++++ .|.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 4799999999999999976 589999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-09 Score=113.82 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=45.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTK 124 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G-~I~~~G~~~~ 124 (557)
+.+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECC
Confidence 46899999999999999999999999999999 6777665 56 8999998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-09 Score=121.40 Aligned_cols=78 Identities=29% Similarity=0.359 Sum_probs=67.1
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCchHH
Q 008669 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (557)
Q Consensus 192 ~~~LSgGerq------Rv~ia~aL~~~-----p-~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 258 (557)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998864 3 67999999999999999999999999976664 899999996 34
Q ss_pred HhcCCeEEEeeCC
Q 008669 259 FELFDRLYLLSGG 271 (557)
Q Consensus 259 ~~~~D~v~~L~~G 271 (557)
...+|+++.+...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5689999999743
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.5e-09 Score=124.63 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=68.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.+..||||||++++||++++. .|++++||||+++||+.+...+.++|++++. +..+|++||++ .....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 47899999996 4678999999
Q ss_pred EeeC
Q 008669 267 LLSG 270 (557)
Q Consensus 267 ~L~~ 270 (557)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-07 Score=80.04 Aligned_cols=118 Identities=32% Similarity=0.439 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
++..+.|.||+|+||||+++.|+....... .+-+.++....... . .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~---------------~-~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE---------------V-LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc---------------C-HHHHH------------
Confidence 367899999999999999999998876531 13444443321100 0 00000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~----- 235 (557)
..... . ......+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -------------~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIVG----G-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhhh----c-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00000 0 112367788888888888888899999999999999998887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 008669 236 -TLRCLSRDGRTVIASIH 252 (557)
Q Consensus 236 -~L~~l~~~g~tvi~~~H 252 (557)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223345788888888
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-08 Score=105.93 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=69.3
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCcccEEEEccC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-----------~~~~~~~yv~Q~ 136 (557)
+..+|+++ +.+.+||.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998775322355555554321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHhhc
Q 008669 137 DNLIGTLTVRETISYSARL 155 (557)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~ 155 (557)
...+..+++.+++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999877654
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-08 Score=110.70 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=97.1
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CcccEEEEccCCCCCCCC
Q 008669 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L--~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~l 143 (557)
-|+.+ .+=+++|..+.|.|++|||||||..-. .|....+ +.-+++....... ..+..||-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 46664 567899999999999999999999876 3444322 3334444332100 0112233222110000
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCC
Q 008669 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEP 221 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~aL~~~p~llllDEP 221 (557)
++.+ .. ..+. .....+++.+++.+..+... +.+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~---~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD---ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee---cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 00111233344444444432 45899999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-------H-HhcCCeEEEee
Q 008669 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 269 (557)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999985320 2 55789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=98.03 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=108.0
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------------C-cccEEEEc
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------------S-FGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------------~-~~~~~yv~ 134 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+..+. . .+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 999999999999999999999999999998775 6766666653110 0 11123333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHHhCC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~aL~~~p 213 (557)
+.+. ++.+-.. + .... -.+.+.+...|- |..+ ...+++- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~~--~---------~~~a-~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-----Eis--- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLK--G---------AYVA-TAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-----EIG--- 273 (440)
T ss_pred CCCC-----CHHHHHH--H---------HHHH-HHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-----HHH---
Confidence 3221 1111110 0 0011 112233333342 2221 1112221 12222 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 214 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+.+.|| +.|+|+.....+.+++.+....+. ||++..||.. ..++|++.-+.+|+++.+...++.
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 234675 459999999999999999877667 8888889853 457899999999999998876543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-06 Score=101.69 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.7
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh--cCCeEEEeeCCeEE
Q 008669 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv 274 (557)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999888999999999974 4543 23434333444444
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=100.59 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 194 GISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~---------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |.+|++++|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence 589999999999999999 99999999999999999999999999754 67999999986
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-08 Score=98.67 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.5
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
-|+.+ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4678999999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=89.02 Aligned_cols=81 Identities=23% Similarity=0.234 Sum_probs=59.4
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-CcccEEEEccCC--CCCCCCCHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-SFGTAAYVTQDD--NLIGTLTVR 146 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~-~~-~~~~~~yv~Q~~--~l~~~lTV~ 146 (557)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+... .. ....++++.|.+ ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455668899999999999999999999999999875 79999987532 11 123456665543 345667888
Q ss_pred HHHHHHhh
Q 008669 147 ETISYSAR 154 (557)
Q Consensus 147 e~l~~~~~ 154 (557)
+.+....+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=98.25 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008669 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCC-----CCCCce
Confidence 47999999999999999 899999999999999999999999888653 2344444443 357999
Q ss_pred EEEeeCCeEE
Q 008669 265 LYLLSGGKTV 274 (557)
Q Consensus 265 v~~L~~G~iv 274 (557)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998874
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=108.01 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=69.3
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 008669 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~------~~--p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
.+..|||||+=.++||.+|+ .+ -+++||||||..||+.+...++++|..+...+.+|++|||++ +..+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999887777665 35 699999999999999999999999999988899999999994 678899
Q ss_pred CeEEEeeC
Q 008669 263 DRLYLLSG 270 (557)
Q Consensus 263 D~v~~L~~ 270 (557)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-07 Score=91.99 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhc-cCCCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL-RLPDKMP 162 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~ 162 (557)
+++|.||||||||||.+.|++.+. .|.+ .++++|+.. ..++..+........ ..+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 579999999999999999999862 2222 333443322 122333322211110 1111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
.+...+.+..+...+..+.+ ....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334555555544333322 23578888776554 5688999999999998876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=92.07 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567999999999853 45667777655
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=97.81 Aligned_cols=85 Identities=24% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---e
Q 008669 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---K 122 (557)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~ 122 (557)
..++..++.++++..+. .+..+++.++ .+.+||.++|+||||+|||||+++|++..+++ .|.|.+.|+ +
T Consensus 134 ~~~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergre 205 (450)
T PRK06002 134 ATAPPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGRE 205 (450)
T ss_pred CCCCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCcc
Confidence 34455688889988874 2467888886 89999999999999999999999999998875 799988653 3
Q ss_pred CC---------CCcccEEEEccCCC
Q 008669 123 TK---------LSFGTAAYVTQDDN 138 (557)
Q Consensus 123 ~~---------~~~~~~~yv~Q~~~ 138 (557)
.. ...+.+++|+|.+.
T Consensus 206 v~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 206 VREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 21 11256899999764
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.7e-07 Score=105.55 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=86.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
..|=+|+++. +.+.++.|.|||++||||+||.++-..--. .-| +|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceE---ecccCe
Confidence 4467788887 677899999999999999999986431100 011 234432211 111111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEP---TS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~--~p~llllDEP---ts 223 (557)
+..++|-. |. ..++.|-=+.....++..|-. +++++|+||| |+
T Consensus 653 ------------------------I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 ------------------------IFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ------------------------eeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111211 11 113567666666666666654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCe
Q 008669 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+|..+ ..+..++.+.+. |.+++++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888443 455566666665 5899999999 367777775
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-07 Score=95.07 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=63.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCccccccee--------
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~-------- 73 (557)
++.++++|+++++..+++-.. .| ....-.++|+||++.|+ .++.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~---------------e~~~~ri~Fe~LTf~YP----~er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DP---------------EKAKNRVLFENLTPLYP----NERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------Cc---------------cccCCCeEEEEeeecCC----CccceeecCccccce
Confidence 456789999999998887322 11 01122599999999985 2346786
Q ss_pred ---ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 74 ---~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
|+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999988754
|
Members of this family differ in the specificity of RNA binding. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=105.16 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=90.0
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
..-+++..+.+++++|+|++|+|||||++++.+..... ..|.+++++........ .+-.++... .+...
T Consensus 197 ~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~ 265 (1153)
T PLN03210 197 SSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL 265 (1153)
T ss_pred HHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH
Confidence 33456777889999999999999999999998766442 37888887632111000 010110000 00000
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
...++.+.++++..++. + .. .++.|+| |..++-+++||+- |..
T Consensus 266 ------------~l~~~~l~~il~~~~~~------~-----~~-~~~~~~~------L~~krvLLVLDdv----~~~--- 308 (1153)
T PLN03210 266 ------------HLQRAFLSEILDKKDIK------I-----YH-LGAMEER------LKHRKVLIFIDDL----DDQ--- 308 (1153)
T ss_pred ------------HHHHHHHHHHhCCCCcc------c-----CC-HHHHHHH------HhCCeEEEEEeCC----CCH---
Confidence 00112233343333321 1 11 2566666 3356667888983 433
Q ss_pred HHHHHHHHHH---hCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEcCcchHHHHHHhCCC
Q 008669 232 FVTQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (557)
Q Consensus 232 ~i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 291 (557)
..++.|.... ..|.+||+|||+. ..+... +|+++.+.. =+.+++.+.|....+
T Consensus 309 ~~l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 DVLDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 3344444432 3588999999995 333333 576665531 134567777766544
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.4e-07 Score=107.73 Aligned_cols=61 Identities=30% Similarity=0.398 Sum_probs=53.4
Q ss_pred ccCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 191 HLRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 191 ~~~~LSgGerqRv~----ia~a--------L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 35689999999996 5645 45899999999999999999999999999888 68899999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=92.55 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999888999999999974
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.4e-07 Score=84.03 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEccCCCCCCCCCHHHHHHH
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46777653211 1124555665444444455555443
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=66.93 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=30.0
Q ss_pred eeceeEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 72 L~~vs~~i~~-Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.++.++++.+ |++++|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777775 569999999999999999999766544
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.8e-05 Score=76.43 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888889999999999999999999999988754
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00028 Score=70.84 Aligned_cols=166 Identities=10% Similarity=0.074 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------Chh-h--HHHHHHHHHHHHHHHHHHHHh
Q 008669 383 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT------GYN-S--ILARGSCASFVFGFVTFMSIG 452 (557)
Q Consensus 383 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~------~~~-~--~~~r~g~lff~~~~~~~~~~~ 452 (557)
+++++.+++|.++..+|||..+..-+++-++.-++.|.+|-.. +. +.. + .+--.|.+.+...+..+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3688999999999999999999999999999999999888442 11 000 0 111112222222111111 1
Q ss_pred hHHHHHHhh--HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 008669 453 GFPSFVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 530 (557)
Q Consensus 453 ~~~~~~~er--~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s 530 (557)
+. ....|| ..+.+=+... .++..+.+++++..+-..++..++...+.+. .|.+.+...++.....+++...+..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 112222 2333333333 3678899999999987777776665555443 36655544444344444556666779
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 008669 531 LMMAIASIVPNFLMGIITGAGIQ 553 (557)
Q Consensus 531 ~~~~i~~~~p~~~~a~~~~~~~~ 553 (557)
++++++.++++......+.+.++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~ 178 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVI 178 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999877666555443
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.3e-05 Score=79.25 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCchH
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL-----DSAAAFFV----------TQTLRCLSR-DGRTVIASIHQPSSE 257 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvi~~~H~~~~~ 257 (557)
+=||-.-|=..|..||=..+++||+||=||+- |...+..+ ++.++.+.+ .|.+.|+++-- +.+
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999975 55555544 556677744 68888888765 678
Q ss_pred HHhcCCeEEEeeCCeE
Q 008669 258 VFELFDRLYLLSGGKT 273 (557)
Q Consensus 258 i~~~~D~v~~L~~G~i 273 (557)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999997654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=88.52 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC--------CCcccEEEE---
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK--------LSFGTAAYV--- 133 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~~~--------~~~~~~~yv--- 133 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. ....+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477777563 221 011234455
Q ss_pred --ccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 008669 134 --TQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (557)
Q Consensus 134 --~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (557)
+|++. +.+.+ +...+.-..+.+........+...++.+.+++++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33333 444443332222111112345667788889998884
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.9e-06 Score=76.48 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008669 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL-----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
.+.+.+...+..- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445566555321 12222 2345788988877665553 2345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=70.90 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=101.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC--ChhhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHhhH-H
Q 008669 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT--GYNSILA----RGSCASFVFGFVTFMSIGGFPSFVEDMK-V 463 (557)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~--~~~~~~~----r~g~lff~~~~~~~~~~~~~~~~~~er~-v 463 (557)
|+++..+|||.....-+++-++..++.|.+|-+. +. ..++... -.|.+.+.+...+.. .... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhH-HHHHHHhC
Confidence 6778899999999988888888888888887542 11 1112111 122222222111111 1111 112222 2
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 008669 464 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 543 (557)
Q Consensus 464 ~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~ 543 (557)
+.++....=-++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++...+..+++.++++..++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2222222334578999999999999999999999999998877554 33554555566667778899999999999988
Q ss_pred HHHHHHHHHHH
Q 008669 544 MGIITGAGIQV 554 (557)
Q Consensus 544 ~a~~~~~~~~~ 554 (557)
.++.+.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (236)
T TIGR01247 156 GFQIIMSMLML 166 (236)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-06 Score=89.61 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=58.1
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcccEEEEccCCCCCCCCCHHHHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
++.+.-.+++|++++|+|+||+|||||+|.|+|...+. +|+|.+++.... ...+.+.+++|+..++.+ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 45555567899999999999999999999999998875 899999874321 123568899998877764 455554
Q ss_pred HH
Q 008669 150 SY 151 (557)
Q Consensus 150 ~~ 151 (557)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.8e-05 Score=86.33 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 209 ILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999974
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=68.85 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCC
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQP 254 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~ 254 (557)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3445555566778999999998765 56667778888877643 467888888864
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=67.99 Aligned_cols=48 Identities=40% Similarity=0.518 Sum_probs=36.5
Q ss_pred cCCCCHHHHH-HHHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008669 192 LRGISGGERR-RVSIALEI------LM------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (557)
Q Consensus 192 ~~~LSgGerq-Rv~ia~aL------~~------~p~llllDEPtsgLD~~~~~~i~~~L~~ 239 (557)
..++|||||| .+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 44443332 22 3799999999999999999999999874
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.5e-05 Score=70.95 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008669 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--ia~aL~~-~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
.+.+.++..++.- -.+++ +...+|+||+|++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 33458999999977 5555543 3444 399999999999999999887654
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.4e-06 Score=79.47 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch-HHHhcCCeEEEeeC
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-EVFELFDRLYLLSG 270 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~~L~~ 270 (557)
-|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++...+|.+|++.+|...+ .....||++++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 378899999999999999988777 8899999999999998886667899999998532 35678999988764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=89.61 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
..+.++|+||||+|||||++++.+...+.. ...+-+.+||....... ...++-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~----------------~~i~~~llg--- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP----------------REVTNPLLG--- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH----------------HHHhHHhcC---
Confidence 346799999999999999999998764320 01223555543221000 000111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008669 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235 (557)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 235 (557)
.. .+...+...+.++..|+.+..+..+ ..+||| +||+|| +..||+..+..+.+
T Consensus 235 ----~~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 ----SV-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred ----Cc-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01 1111223455677788876555543 458888 999999 79999999999999
Q ss_pred HHHH
Q 008669 236 TLRC 239 (557)
Q Consensus 236 ~L~~ 239 (557)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=87.53 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.4
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCch-------HHHhcCCeEEEeeCCe
Q 008669 211 MRPRLLFLDEPTSGL----D-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPSS-------EVFELFDRLYLLSGGK 272 (557)
Q Consensus 211 ~~p~llllDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 272 (557)
.+|+++++|.-++=. + ....+++...|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234555666777755 69999999996432 1567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=78.02 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCC
Q 008669 210 LMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~-L~~l~~-~g~tvi~~~H~~ 254 (557)
+.+..++|+||+-.|=++.....+... ++.+.+ .+..++++||..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 456789999999999999998777554 566776 488999999995
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.2e-06 Score=87.41 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=55.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCcccEEEEccCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---------LSFGTAAYVTQDD 137 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~ 137 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|++.. ...+++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 999999999999999999999999999988776434589999997632 1225677776654
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-05 Score=84.49 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=50.1
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCchHHHhcCCeEEEeeCCeE
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------------QPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------------~~~~~i~~~~D~v~~L~~G~i 273 (557)
|..+|+++++||.-.. .+ ++.+..++..|..++.+.| +. ..+.+.+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 6789999999999743 22 4555555556888999999 64 467789999999999999
Q ss_pred --EEEcCcch
Q 008669 274 --VYFGETSA 281 (557)
Q Consensus 274 --v~~G~~~~ 281 (557)
+|.+....
T Consensus 393 ~~v~~~~~~~ 402 (602)
T PRK13764 393 SKVYDLEFTV 402 (602)
T ss_pred EEEEeeeeEE
Confidence 78776443
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.5e-06 Score=80.20 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++|++++|.||||||||||++.|++.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=71.68 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=44.3
Q ss_pred hCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc--------hHHHhcCCeEEEee
Q 008669 211 MRPRLLFLDEPTS------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--------SEVFELFDRLYLLS 269 (557)
Q Consensus 211 ~~p~llllDEPts------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--------~~i~~~~D~v~~L~ 269 (557)
.+++++++| |.+ +.|+..+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 433 44566677888899999888999999999621 22567889999985
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.1e-06 Score=87.57 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=52.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
.++-++++..+. .+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 456666666553 346799999 999999999999999999999999999998876 6887777753
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.1e-06 Score=80.52 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=46.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeCCC-CcccEEEEccCCCCCCCCCHHHHHHHHhh
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT----ILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~----I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (557)
.+..+++|.||||||||||.+.|++.+++. +|. |.+++..... .....+++++.+ .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456899999999999999999999999875 676 5555432111 112346666533 3345566666655444
Q ss_pred c
Q 008669 155 L 155 (557)
Q Consensus 155 ~ 155 (557)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=82.24 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=44.3
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 46699999 999999999999999999999999999998875 677776664
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.6e-05 Score=79.83 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++|.+++|.||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999874
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 557 | ||||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-14 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-14 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-14 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-12 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-12 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-12 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-12 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-12 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-12 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-12 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-12 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-11 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-11 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-11 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-11 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-11 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 7e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-10 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-10 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 7e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 7e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-04 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-04 | ||
| 3qf7_A | 365 | The Mre11:rad50 Complex Forms An Atp Dependent Mole | 7e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-04 |
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair Length = 365 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ + + + L G + A++G +G GKSTLLD L + G I +
Sbjct: 10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV-- 64
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEK-RTLVERTIIEM 177
+ + +V Q + +V + + S + K + + + +
Sbjct: 65 ------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK--PKSHDYQVAMQALDYL 116
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L A + +SGG+R+ + IA I +L+ LDEPTS LD A V L
Sbjct: 117 NLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 238 RCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L++ TV+ + HQP+ V + ++ LL+ FGET
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-33
Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 44/243 (18%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L + L L+G G + L+GP+G+GKSTLL ++ + G+I
Sbjct: 2 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQ 57
Query: 118 LNGHKTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G + ++ AY++Q V ++ + L+
Sbjct: 58 FAG-QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-------DK-TRTELLN 108
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-------LEILMRPRLLFLDEPTSG 224
+ L D +SGGE +RV +A + +LL LDEP +
Sbjct: 109 DVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL------FDRLYLLSGGKTVYFGE 278
LD A + + L LS+ G ++ S H +L R +LL GGK + G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH-------DLNHTLRHAHRAWLLKGGKMLASGR 216
Query: 279 TSA 281
Sbjct: 217 REE 219
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------- 121
+L+G++ E G + L+GP+G+GK+T L +S+ + + SG + + G
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 122 KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
+ + Y+ ++ + E + + A SE +VER GL +
Sbjct: 85 EVRKLIS---YLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGE 138
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ + S G R++ IA +++ PRL LDEPTSGLD A V + L+ S
Sbjct: 139 KIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++G T++ S H EV L DR+ L+ G V G
Sbjct: 194 QEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-31
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 24/209 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL 125
VLE +T E G + GP+G GK+TLL +S+ L G I+ NG K K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
++ ++ + ++V + + A L + ++ + + + + D
Sbjct: 79 KIF---FLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEVLDLKKK 130
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ +S G RRV +A +L+ + LD+P +D + V +++ + ++
Sbjct: 131 L------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTV 274
VI S S E D L T
Sbjct: 185 IVIIS----SREELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-29
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 30/239 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ +L+ ++ G L G +G+GK+TLL+ L++ + SGT+ L G
Sbjct: 27 IGRMKQGKT-ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFG 82
Query: 121 H---KTKLSFGTA----AYVTQD--DNLIGTLTVRETI-----SYSARLRLPDKMPWSEK 166
K S T +V+ + V + + + D E
Sbjct: 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD----EI 138
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R + + +G+ A IG +S GE++RV IA ++ +P++L LDEP +GLD
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 227 SAAAFFVTQTLRCLSRDGR--TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
A + L LS +I H E+ F ++ LL G+++ G
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 35/233 (15%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKL 125
LE ++ G + G +GSGKSTLL + + SG +L +G + K
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIV------AGLIEPTSGDVLYDGERKKG 73
Query: 126 SF--GTAAYVTQ--DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
Q +D V + ++++ + PD+ + LV++ + +GL
Sbjct: 74 YEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR----DPVPLVKKAMEFVGLDF 128
Query: 182 CADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ +SGGE+RRV+IA I+ P +L LDEP GLD + +
Sbjct: 129 --------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ G+TVI H V DR+ +L GK V+ G EF +
Sbjct: 181 VEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRM---EFLEKY 229
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKT 123
+ + L+G+ + G +TA++G +G GKSTL N L SG IL +
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNF------NGILKPSSGRILFDNKPI 72
Query: 124 KLSFGTAA-------YVTQ--DDNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERT 173
S V Q D+ L +V + +S+ A ++LP+ E R V+
Sbjct: 73 DYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNA 127
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+ G++ D L S G+++RV+IA ++M P++L LDEPT+GLD +
Sbjct: 128 LKRTGIEHLKDKPT--HCL---SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ L + ++ G T+I + H V D ++++ G+ + G E FA+
Sbjct: 183 MKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK---EVFAEK 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 2e-23
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTIL 117
V + ++ +L ++ A+P ++ A GPSG GKST+ L R F +G I
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFS-LLER-----FYQPTAGEIT 60
Query: 118 LNGHK----TKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
++G + ++ + +V+QD ++ T+RE ++Y D+ W R
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 173 TIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ + + D +T +G RG+ SGG+R+R++IA L P++L LDE T+ LDS +
Sbjct: 120 SFV-ENMPDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 231 FFVTQTLRCLSRDGRT--VIA 249
V + L L + GRT VIA
Sbjct: 176 SMVQKALDSLMK-GRTTLVIA 195
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-22
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 37/244 (15%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
VL G + +MG +G+GK+TL+ L+ L + G + +
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL-NVSMKPQ 420
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
A TVR+ R + + + + + D D
Sbjct: 421 KIAPKFPG-------TVRQLFFKKIRGQFLNPQ-------FQTDVVKPLRIDDIID---- 462
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV 247
++ +SGGE +RV+I L + + + +DEP++ LDS ++ +R +T
Sbjct: 463 -QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI 307
H L D++ + G + A L + FL+ +
Sbjct: 522 FIVEHDF-IMATYLADKVIVFEGIPSKN-AHARAPES-----------LLTGCNRFLKNL 568
Query: 308 NSDF 311
N F
Sbjct: 569 NVTF 572
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 3e-20
Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 27/212 (12%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNA--------------FLSGTILLNGHKTKL 125
PG + L+G +G GKST L L+ + N + G+ L N + TK+
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN-YFTKM 159
Query: 126 SFG--TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Q + I L+L + + V+R I + L++
Sbjct: 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLEN-- 213
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + +SGGE +R +I + + + DEP+S LD Q +R L
Sbjct: 214 ---VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
+ VI H S + L D + ++ G +VY
Sbjct: 271 TKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 62/202 (30%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTK- 124
VL+GLT PG +TAL+GP+GSGKST+ AL G +LL+G
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQN-----LYQPTGGKVLLDGEPLVQ 85
Query: 125 --LSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---- 176
+ A V Q+ L G + RE I+Y L E I
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEE--------ITAVAME 132
Query: 177 -------MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
G DT +G G SGG+R+ V++A ++ +PRLL LD TS LD+
Sbjct: 133 SGAHDFISGFPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 228 AAAFFVTQTL-RCLSRDGRTVI 248
V + L RTV+
Sbjct: 190 GNQLRVQRLLYESPEWASRTVL 211
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 5e-21
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 27/202 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLSFGTAAYVTQD-D 137
G ++GP+GSGK+TLL A+ + L SG I +NG + + Y T +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAI------SGLLPYSGNIFINGMEVRKIRNYIRYSTNLPE 82
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
+TV + + L+ + + L + I L +S
Sbjct: 83 AYEIGVTVNDIVYLYEELK-----GLDRDL--FLEMLKALKLGE----EILRRKLYKLSA 131
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G+ V +L + +P ++ LDEP +D+A + ++ G+ I H+
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAA----RRHVISRYIKEYGKEGILVTHE-LD 186
Query: 257 EVFELFDRL-YLLSGGKTVYFG 277
+ + Y L G +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPI 208
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-21
Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 41/284 (14%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKS 96
KE + + S D+ ++ W + + L G A+ G + ++GP+G GK+
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 97 TLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156
T L + ++ G++ +Y Q TV++ L
Sbjct: 309 TFARILVGEITAD---EGSVTPEKQI-------LSYKPQRIFPNYDGTVQQ------YLE 352
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216
K S E + L ++ ++ +SGGE +++ IA + L
Sbjct: 353 NASKDALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLY 407
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI-HQPSSEVFELFDRLYLLSGGKTVY 275
LD+P+S LD + V + ++ ++R+ + V I H S + DR+ + G
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKA 466
Query: 276 FGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLK 319
G ++ + + FLR + F + T +
Sbjct: 467 -GLATSPVTL-----------KTGMNEFLRELEVTFRRDAETGR 498
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-19
Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 23/264 (8%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF------LSGTILLNGHKTKLSFGTAAYV 133
+ T+ ++G +G GK+T+L L+ + N +L ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
+ + ++ + E S + + + + ++R + + + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI---- 138
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG +R+ +A +L + D+P+S LD + + +R L + + VI H
Sbjct: 139 -LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDF-- 311
+ L D ++++ G +VY G S ++ + N +L N
Sbjct: 197 -LIVLDYLTDLIHIIYGESSVY-GRVSKSY-------AARVGINNFLKGYLPAENMKIRP 247
Query: 312 DKVKATLKGSMKLKFETSDDPLEK 335
D++K LK L K
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMK 271
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 7e-21
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 45/209 (21%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGH 121
++ +L+ + + G + ++G SGSGKSTL L R F +G +L++GH
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQR-----FYIPENGQVLIDGH 71
Query: 122 ---KTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
++ V QD+ L+ ++ + IS + + ++ + +I
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLA-----------NPGMSVEK--VIY 117
Query: 177 -----------MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTS 223
L++ +T++G +G SGG+R+R++IA ++ P++L DE TS
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATS 174
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
LD + + + + + + GRTVI H
Sbjct: 175 ALDYESEHVIMRNMHKICK-GRTVIIIAH 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 8e-21
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 42/223 (18%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSSRLASNAFLSGTILLNGHKT- 123
+L+G++ + G +++G SGSGKSTL LDA + G + L G +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---------GKVFLEGKEVD 69
Query: 124 KLSFGTAA--------YVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVER 172
+ + +V Q LI LT E + +P P E + E
Sbjct: 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI------VPMLKMGKPKKEAKERGEY 123
Query: 173 TIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ E+GL D +SGGE++RV+IA + P LLF DEPT LDSA
Sbjct: 124 LLSELGLGDKLS------RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
V ++ G +++ H+ E+ EL R + GK V
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 8e-21
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 41/264 (15%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--- 111
+ L G VL L + G + ++GP+G+GKST + L+ +L N
Sbjct: 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN 79
Query: 112 LSGTILLNG--------HKTKLSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM 161
S ++ + KL G V + +LI + I + +
Sbjct: 80 DSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI---------ELL 130
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
+++ +E + + L++ + I + +SGGE +RV+IA +L F DEP
Sbjct: 131 KKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+S LD + +R LS +G++V+ H + + L D ++++ G VY G S
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV-LDYLSDIIHVVYGEPGVY-GIFSQ 243
Query: 282 AFEFFAQAGFPCPALRNPSDHFLR 305
RN + FLR
Sbjct: 244 PKGT-----------RNGINEFLR 256
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
LE G + G + ++GP+G GK+T + L+ G I +
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL-------- 347
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
T AY Q TV E +S +L + +G+ D D
Sbjct: 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDR--- 397
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 247
+ +SGGE +RV+IA +L + LDEP++ LD V++ +R L ++ +T
Sbjct: 398 --EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 248 I 248
+
Sbjct: 456 L 456
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHK----TK 124
L+ + + GT AL+G +GSGKST+ L R F G I + G +
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAK-LLYR-----FYDAEGDIKIGGKNVNKYNR 88
Query: 125 LSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE------- 176
S + V QD L T++ I Y K + +I+
Sbjct: 89 NSIRSIIGIVPQDTILFNE-TIKYNILYG-------------KLDATDEEVIKATKSAQL 134
Query: 177 ----MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
L DT++GN +G+ SGGER+R++IA +L P+++ DE TS LDS
Sbjct: 135 YDFIEALPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 231 FFVTQTLRCLSRDGRT--VIA 249
+ + + L + RT +IA
Sbjct: 192 YLFQKAVEDLRK-NRTLIIIA 211
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 30/218 (13%)
Query: 32 SETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPS 91
I K++ + + + L LE G G + ++GP+
Sbjct: 338 PYEIRFTKLSERVDVERETLVEYPRL------VKDYGSFKLEVEPGEIRKGEVIGIVGPN 391
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151
G GK+T + L+ G + + T AY Q TV E +S
Sbjct: 392 GIGKTTFVKMLAGVEEPT---EGKVEWDL--------TVAYKPQYIKAEYEGTVYELLSK 440
Query: 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211
+L + +G+ D D ++ +SGGE +RV+IA +L
Sbjct: 441 IDSSKLNS-------NFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLR 488
Query: 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+ LDEP++ LD V++ +R L +T +
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-20
Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNG--------HKTKLSFG 128
+ G + ++GP+G+GK+T + L+ +L N S ++ + +L G
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
V + + + + + + ++ + + ++ E + E+ L++ D +
Sbjct: 175 EIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH 227
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+SGGE +RV+IA +L + F DEP+S LD V + +R L+ +G+ V+
Sbjct: 228 Q-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 249 ASIHQPSSEVFELFDRLYLL 268
H L +L
Sbjct: 283 VVEH-----------DLAVL 291
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-20
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSSRLASNAFLSGTILLNGHKT- 123
L+ + + G ++MGPSGSGKST+ LD + G + ++ KT
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---------GEVYIDNIKTN 70
Query: 124 KLS-----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
L G +V Q NLI LT E + + M E+R
Sbjct: 71 DLDDDELTKIRRDKIG---FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 173 TIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L++ H +SGG+++RV+IA + P ++ D+PT LDS
Sbjct: 128 CLKMAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 232 FVTQTLRCLSR-DGRTVIASIHQP 254
+ Q L+ L+ DG+TV+ H
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDI 206
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-20
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 35/206 (16%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTIL 117
V S + L+ ++ PG AL+GPSG+GKST+L L R F SG I
Sbjct: 59 VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFR-----FYDISSGCIR 112
Query: 118 LNGHK----TKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KR 167
++G T+ S + V QD L T+ + I Y R+ + E +
Sbjct: 113 IDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRY-GRVTAGN----DEVEAAAQA 166
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ I M + T +G RG +SGGE++RV+IA IL P ++ LDE TS L
Sbjct: 167 AGIHDAI--MAFPEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 226 DSAAAFFVTQTLRCLSRDGRT--VIA 249
D++ + +L + RT V+A
Sbjct: 222 DTSNERAIQASLAKVCA-NRTTIVVA 246
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 5e-19
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSF-- 127
+L+GL + G AL+G SG GKST + L RL L G + ++G + ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDP--LDGMVSIDGQDIRTINVRY 461
Query: 128 --GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE-------MG 178
V+Q+ L T T+ E I Y D +E+ + E M
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRYG----REDV-----TMDEIEKAVKEANAYDFIMK 511
Query: 179 LQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
L DT++G RG SGG+++R++IA ++ P++L LDE TS LD+ + V
Sbjct: 512 LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L GRT I H+ S+ D + GG V G
Sbjct: 569 LDKARE-GRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 43/202 (21%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTK- 124
VL+GL+ + G AL+G SG GKST++ L R F ++G++ L+G + K
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLER-----FYDPMAGSVFLDGKEIKQ 1099
Query: 125 --LSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---- 176
+ + V+Q+ L ++ E I+Y R + I+
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDC-SIAENIAYGD-----------NSRVVSYEEIVRAAKE 1147
Query: 177 -------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
L D +T +G+ +G +SGG+++R++IA ++ +P +L LDE TS LD+
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 228 AAAFFVTQTLRCLSRDGRTVIA 249
+ V + L GRT I
Sbjct: 1205 ESEKVVQEALDKARE-GRTCIV 1225
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 5e-18
Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 49/214 (22%)
Query: 61 VTLS-NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTI 116
VT + G+ L ++ G AL+G SGSGKST+ + L +R F SG+I
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN-LFTR-----FYDVDSGSI 400
Query: 117 LLNGHKTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
L+GH + + A V+Q+ +L T+ I+Y+A +
Sbjct: 401 CLDGHDVR-DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTRE---------- 448
Query: 171 ERTIIE-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLF 217
I + + DTVIG G +SGG+R+RV+IA +L +L
Sbjct: 449 --QIEQAARQAHAMEFIENMPQGLDTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
LDE TS LD+ + + L L + +T VIA
Sbjct: 504 LDEATSALDTESERAIQAALDELQK-NKTVLVIA 536
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGH 121
G L + G AL+G SGSGKST+ L +R F G IL++GH
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS-LITR-----FYDIDEGHILMDGH 405
Query: 122 KTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ + A A V+Q+ +L TV I+Y+ ++ + I
Sbjct: 406 DLR-EYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQ--------IE 451
Query: 176 E-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPT 222
E + + DT+IG G +SGG+R+R++IA +L +L LDE T
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
S LD+ + + L L + RT VIA
Sbjct: 509 SALDTESERAIQAALDELQK-NRTSLVIA 536
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 53/211 (25%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGH 121
N +L+ + E G A +G SG GKSTL++ L R F SG IL++GH
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPR-----FYDVTSGQILIDGH 403
Query: 122 ---KTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
G V QD+ L TV+E I R D+
Sbjct: 404 NIKDFLTGSLRNQIG---LVQQDNILFSD-TVKENILL-GRPTATDE------------E 446
Query: 174 IIE-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDE 220
++E M L DT +G RG +SGG+++R+SIA L P +L LDE
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDE 503
Query: 221 PTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
TS LD + + + L LS+ RT ++A
Sbjct: 504 ATSALDLESESIIQEALDVLSK-DRTTLIVA 533
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 8e-15
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 36/205 (17%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGH 121
G VL+G++ A G + +++G SGSGKST L + N FL G I++NG
Sbjct: 17 GGHE-VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI------N-FLEKPSEGAIIVNGQ 68
Query: 122 KTKLSFGTAAYVTQDD------------------NLIGTLTVRETISYSARLRLPDKMPW 163
L + D NL +TV E + + L +
Sbjct: 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSK 126
Query: 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223
+ R + + ++G+ + A HL SGG+++RVSIA + M P +L DEPTS
Sbjct: 127 HDARERALKYLAKVGIDERAQGKYPV-HL---SGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVI 248
LD V + ++ L+ +G+T++
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMV 207
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 33/245 (13%)
Query: 58 TVMVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL 112
M+ + G VL+G+ + G + ++GPSGSGKST L L+ L F
Sbjct: 22 LQMIDVHQLKKSFGSLE-VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LL--EDFD 77
Query: 113 SGTILLNGHKTKLSFGTAAY-------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
G I+++G K V Q NL +TV I+ + K P +
Sbjct: 78 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR--KWPREK 135
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ ++GL+D A + +SGG+ +RV+IA + M P+++ DEPTS L
Sbjct: 136 AEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV-F--ELFDRLYLLSGGKTVYFGETSAA 282
D V ++ L+ +G T++ H E+ F E+ DR+ + GG + E
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTH----EMGFAREVGDRVLFMDGGYII---EEGKP 243
Query: 283 FEFFA 287
+ F
Sbjct: 244 EDLFD 248
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FL---SGTILLNGHK- 122
VL ++ +PG + ++G SG GK+TLL L A F SG I L+G
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCL-------AGFEQPDSGEISLSGKTI 68
Query: 123 TKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + Q+ L LTV I+Y K +++R +E +
Sbjct: 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLEL 125
Query: 177 MGLQDCADTVIGNWHLR---GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
G+ + A R +SGG+++R ++A + P L+ LDEP S LD
Sbjct: 126 TGISELAG--------RYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 36/170 (21%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL------ASNAFLSGTILLNG---- 120
+ G++ G + L+GPSGSGK+T+L RL + G + + G
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTIL-----RLIAGLERPT----KGDVWIGGKRVT 80
Query: 121 ----HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
K + V Q+ L +TV + +S+ R + ++P E V +
Sbjct: 81 DLPPQKRNVGL-----VFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRF 132
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
M L+ A+ +SGG+++RV++A + RP++L DEP + +D
Sbjct: 133 MRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 3e-13
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHK-TKL-----SFGTAAYVTQD 136
L+GP+G+GKS L L + + G + LNG T L G V QD
Sbjct: 28 VLLGPTGAGKSVFL-----ELIA-GIVKPDRGEVRLNGADITPLPPERRGIGF---VPQD 78
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
L L+V I+Y R + E+ V ++G+ D +S
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LS 128
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLD 226
GGER+RV++A ++++PRLL LDEP S +D
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 5e-13
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY-VT---- 134
G +T ++GP+GSGKSTL++ ++ L ++ G + +
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDIT---NKEPAELYHYGI 84
Query: 135 ----QDDNLIGTLTVRE-----------TISYSARLRLPDKMPWSEKRTLVER--TIIE- 176
Q + +TV E + S + ++ +VE+ I+E
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW----IPKEEEMVEKAFKILEF 140
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ L D G +SGG+ + V I ++ P+++ +DEP +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 237 LRCLSRDGRTVI 248
+ L G T +
Sbjct: 196 VLELKAKGITFL 207
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 30/205 (14%)
Query: 36 WKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
+ I + D +L+ G +L + + GP+G GK
Sbjct: 416 AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGA-KILLNKTQLRLKRARRYGICGPNGCGK 474
Query: 96 STLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSAR 154
STL+ A+++ + G +T YV D D +V + + S
Sbjct: 475 STLMRAIANGQ-----VDGFPTQEECRT-------VYVEHDIDGTHSDTSVLDFVFESG- 521
Query: 155 LRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213
+ ++ +IE G + I +SGG + ++++A +L
Sbjct: 522 ---------VGTKEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNA 567
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLR 238
+L LDEPT+ LD+ ++ L
Sbjct: 568 DILLLDEPTNHLDTVNVAWLVNYLN 592
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+RG+SGG++ ++ +A RP L+ LDEPT+ LD + +++ L+ +G +I +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGVIIIT- 955
Query: 252 HQPSSEVF--ELFDRLYLLSGGKTVYFG 277
H S F L + ++ + G+ G
Sbjct: 956 H---SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-12
Identities = 54/267 (20%), Positives = 92/267 (34%), Gaps = 66/267 (24%)
Query: 30 PLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMG 89
+ +GD S + L L + + E G L A+ G
Sbjct: 21 LFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKD---------INFKIERGQLLAVAG 71
Query: 90 PSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149
+G+GK++LL + L G I + G ++ +Q ++ I T++E I
Sbjct: 72 STGAGKTSLLMMIMGELEP---SEGKIKHS--------GRISFCSQ-NSWIMPGTIKENI 119
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------------DTVIGNWHLRGI-- 195
+ E R I + C + V+G GI
Sbjct: 120 IGV---------SYDEYR--YRSVI-----KACQLEEDISKFAEKDNIVLGE---GGITL 160
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFF---VTQTLRCLSRDGRTVIAS 250
SGG+R R+S+A + L LD P LD F V + + +T I
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-----NKTRILV 215
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ E + D++ +L G + ++G
Sbjct: 216 TSK--MEHLKKADKILILHEGSSYFYG 240
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 9e-12
Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 56/226 (24%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L G I + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHS--------GRI 71
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------- 183
++ +Q + I T++E I + + E R I + C
Sbjct: 72 SFCSQ-FSWIMPGTIKENIIFGV--------SYDEYR--YRSVI-----KACQLEEDISK 115
Query: 184 -----DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFF-- 232
+ V+G GI SGG+R R+S+A + L LD P LD F
Sbjct: 116 FAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 233 -VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
V + + +T I + E + D++ +L G + ++G
Sbjct: 173 CVCKLMA-----NKTRILVTSK--MEHLKKADKILILHEGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 56/228 (24%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129
L G+T G L A++G G GKS+LL AL + + + G + + G+
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIK--------GS 67
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------ 183
AYV Q I ++RE I + E I Q CA
Sbjct: 68 VAYVPQ-QAWIQNDSLRENILFGC--------QLEEPY--YRSVI-----QACALLPDLE 111
Query: 184 ------DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFFV 233
T IG +G+ SGG+++RVS+A + + D+P S +D+ F
Sbjct: 112 ILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 234 TQTLRCLSRDG----RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G +T I H D + ++SGGK G
Sbjct: 169 ----NVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGGKISEMG 210
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 54/257 (21%)
Query: 60 MVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
M+ LSN T L ++ + G + ++G SG+GKSTL+ R +
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVN--L 76
Query: 112 L----SGTILLNGHK-TKLS--------------FGTAAYVTQDDNLIGTLTVRETISYS 152
L G++L++G + T LS F Q NL+ + TV ++
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGMIF-------QHFNLLSSRTVFGNVALP 129
Query: 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
L D P E + V + +GL D D+ N +SGG+++RV+IA +
Sbjct: 130 LEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASN 181
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271
P++L D+ TS LD A + + L+ ++R G T++ H+ V + D + ++S G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 240
Query: 272 KTVYFGETSAAFEFFAQ 288
+ + E E F+
Sbjct: 241 ELI---EQDTVSEVFSH 254
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 46/246 (18%)
Query: 58 TVMVTLSNGETH----NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
+++ + + + + ++G+ G + L+G +G+GK+T L A++ + +
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---K 60
Query: 114 GTILLNGHK-TKLS------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
G I+ NG T G A V + + LTV E + A R DK
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGI-ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD 118
Query: 167 RTLV--------ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
+ ER L+ T +SGGE++ ++I ++ RP+LL +
Sbjct: 119 LEWIFSLFPRLKER------LKQLGGT---------LSGGEQQMLAIGRALMSRPKLLMM 163
Query: 219 DEPTSGLDSAAAFFVTQ---TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
DEP+ GL A V++ ++ ++++G T++ + Q + ++ Y+L G+ V
Sbjct: 164 DEPSLGL---APILVSEVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVL 219
Query: 276 FGETSA 281
G+ S
Sbjct: 220 EGKASE 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 57/170 (33%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRL------ASNAFLSGTILLNGHKTKLSFGTAAYV 133
E G ++GP+G+GK+ L L SG ILL+G
Sbjct: 24 ESGEYFVILGPTGAGKTLFL-----ELIAGFHVPD----SGRILLDG------------- 61
Query: 134 TQD-DNL------IGT----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+D +L I + V++ + + R++ K+ ++ V T +
Sbjct: 62 -KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDPKR---VLDTARD 114
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ ++ D +SGGE++RV++A ++ P++L LDEP S LD
Sbjct: 115 LKIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 62/254 (24%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+LE ++ PG L+G +GSGKSTLL A RL + G I ++G
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNT---EGEIQIDG---------- 81
Query: 131 AYVTQDDNLIGTLTVRETIS--------YSARLRL--------PDKMPWS--EK---RTL 169
+ I R+ +S R D+ W ++ R++
Sbjct: 82 ----VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSV 137
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+E+ L S G ++ + +A +L + ++L LDEP++ LD
Sbjct: 138 IEQ--FPGKLDFVLVDGGCVL-----SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ +TL+ D TVI + + + D+ ++ K +
Sbjct: 191 YQIIRRTLKQAFAD-CTVILCEARIEAML--ECDQFLVIEENKVRQYDS----------- 236
Query: 290 GFPCPALRNPSDHF 303
P+D F
Sbjct: 237 --ILELYHYPADRF 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 58/369 (15%), Positives = 95/369 (25%), Gaps = 117/369 (31%)
Query: 24 VVGGLSP----LSETIWKEKINTEFSGD--VSAR-LTWKDLTVMV--TLSNGETHNVL-E 73
V L L I E+ + R + D V +S + + L +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133
L P + G GSGK+ + A V
Sbjct: 143 ALLE-LRPAKNVLIDGVLGSGKTWV-------------------------------ALDV 170
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHL 192
Y + ++ K+ W + K T++EM LQ + NW
Sbjct: 171 CLS--------------YKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTS 215
Query: 193 RG-ISGGERRRVSIA---LEILMRPR-----LLFLDEPTSGLDSAAAFFVTQTLRC---- 239
R S + R+ L L++ + LL L + AF L C
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAF----NLSCKILL 270
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ-AGFPCPALR- 297
+R + V + ++ L L+ + + L
Sbjct: 271 TTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVK---------SLLLKYLDCRPQDLPR 320
Query: 298 -----NP----------SDHFLRCIN---SDFDKVKATLKGSMKLKFETSDDPLEKITTA 339
NP D N + DK+ ++ S L + A
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----------LNVLEPA 369
Query: 340 EAIKNLIDF 348
E K
Sbjct: 370 EYRKMFDRL 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 68/468 (14%), Positives = 119/468 (25%), Gaps = 173/468 (36%)
Query: 17 KPAGNSIVVG----GLSPL-SETIWKEKINTEFSGDVSARLTWKDLTVMVTLSN-GETHN 70
+PA N ++ G G + + + K+ + + W + L N
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----W------LNLKNCNSPET 197
Query: 71 VLEGL---------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-- 119
VLE L + + + S ++ L L S+ N L +LLN
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQ 254
Query: 120 ----------GHKT-----------KLSFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL 157
K LS T +++ D + + LT E S + L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDC 313
Query: 158 -PDKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWH--------------LRGISGGER 200
P +P T I E ++D T NW L + E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAES-IRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 201 RRVSIALEILMR----PR----LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI- 251
R++ L + P L++ D S + +L + + + SI
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIP 429
Query: 252 ----------------HQ-------------------PS------------------SEV 258
H+ P E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQ----AGFPCPALRNPSDHFLRCINSDFDKV 314
LF ++L F F Q A + +
Sbjct: 490 MTLFRMVFL--------------DFRFLEQKIRHDSTAWNASGSILNTLQ-----QLKFY 530
Query: 315 KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF-YQTSQHSYAAKEK 361
K + +DP + ++DF + ++ +K
Sbjct: 531 K---------PYICDNDP----KYERLVNAILDFLPKIEENLICSKYT 565
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 41/203 (20%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKT 123
+ VL+ +T + +PG AL+GP+GSGK+T+++ L R F G IL++G
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVN-LLMR-----FYDVDRGQILVDGIDI 419
Query: 124 KL--------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLV 170
+ S G V QD L T TV+E + Y D+ E K T
Sbjct: 420 RKIKRSSLRSSIG---IVLQDTILFST-TVKENLKYG-NPGATDE----EIKEAAKLTHS 470
Query: 171 ERTIIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+ I L + +TV+ + G +S G+R+ ++I L P++L LDE TS +D+
Sbjct: 471 DHFI--KHLPEGYETVLTD---NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 229 AAFFVTQTLRCLSRDGRT--VIA 249
+ + L +G+T +IA
Sbjct: 526 TEKSIQAAMWKL-MEGKTSIIIA 547
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 33/162 (20%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK-TKLSFGTA---- 130
E G ++GPSG+GK+T + R+ A L +G + +
Sbjct: 29 ENGERFGILGPSGAGKTTFM-----RII--AGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 131 ---AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
V Q L LT E I++ KM E R VE + + +
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN--- 135
Query: 188 GNWHLR---GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SG +++RV++A ++ P LL LDEP S LD
Sbjct: 136 -----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 196 SGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
SGGER + +A + M LL LDEPT LD + + + VI
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 250 SIHQPSSEVFELFDRLYLL 268
H E+ + D + +
Sbjct: 310 VSHDE--ELKDAADHVIRI 326
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKT 123
T VL G+ +PG+L A++G +GSGKSTL++ L RL G + ++
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPE----RGRVEVDELDV 407
Query: 124 K-LSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+ + + V Q+ L + T++E + + D++ + K + II +
Sbjct: 408 RTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISL- 465
Query: 179 LQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+ D+ + G SGG+++R+SIA ++ +P++L LD+ TS +D
Sbjct: 466 -PEGYDSRVER---GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 49/182 (26%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSGSGKSTLL + A + SG I + K V Q+
Sbjct: 34 LLGPSGSGKSTLLYTI-------AGIYKPTSGKIYFDE---KDVTELPPKDRNVGLVFQN 83
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
L +TV + I++ LR K P E V + + L
Sbjct: 84 WALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHID----------KLLNRY 130
Query: 193 -RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV+IA ++ P +L LDEP S LD A + R + +
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD---ALLRLEV--------RAELKRL 179
Query: 252 HQ 253
+
Sbjct: 180 QK 181
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 47/184 (25%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK---TKLSFGTA------AYV 133
L+GPSG GK+T L + A L G I + + A V
Sbjct: 34 LLGPSGCGKTTTLRMI-------AGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL- 192
Q L +TV + I++ +LR K+P E V +GL + L
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE---------LLN 134
Query: 193 ---RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
R +SGG+R+RV++ I+ +P++ +DEP S LD A + R +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD---AKLRVRM--------RAELK 183
Query: 250 SIHQ 253
+ +
Sbjct: 184 KLQR 187
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 196 SGGERRRVSIAL-----EILMRPRL--LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
SGGE+ V+++L L+ R+ + LDEPT LD + + R + + +I
Sbjct: 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMII 341
Query: 249 ASIHQPSSEVFELFDRLY 266
+ H E+ ++ D +
Sbjct: 342 IT-HHR--ELEDVADVII 356
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 47/181 (25%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSG GK+T L + A L G I + + V Q
Sbjct: 42 LLGPSGCGKTTTLRMI-------AGLEEPTEGRIYFGD---RDVTYLPPKDRNISMVFQS 91
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
+ +TV E I++ +++ K P E V + +++ L
Sbjct: 92 YAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEE---------LLNRYP 139
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+R+RV++A I++ P +L +DEP S LD A R I +
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD---AKLRVAM--------RAEIKKLQ 188
Query: 253 Q 253
Q
Sbjct: 189 Q 189
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 196 SGGERRRVSIALEILMR------PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
SGGER + +A + M LL LDEPT LD + + + VI
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 49/182 (26%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSG GK+T L + A + SG I + L V Q+
Sbjct: 34 LLGPSGCGKTTTL-----LML--AGIYKPTSGEIYFDD---VLVNDIPPKYREVGMVFQN 83
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
L +TV E I++ R R ++ E V ++ + +L
Sbjct: 84 YALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLID----------NLLDRK 130
Query: 193 -RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV++A ++ +P++L DEP S LD A + R I +
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANLRM-IM--------RAEIKHL 179
Query: 252 HQ 253
Q
Sbjct: 180 QQ 181
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L+ KDL V V E +L GL+ PG + A+MGP+GSGKSTL L+ R
Sbjct: 21 LSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV- 74
Query: 112 LSGTILLNG 120
GT+ G
Sbjct: 75 TGGTVEFKG 83
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI---SGGERRRVSIALEI----LMRPRL 215
+ R ++ + G D R SGGER +SI+L + + RL
Sbjct: 250 LTNGRFDIDFDDEKGGFII-KDW----GIERPARGLSGGERALISISLAMSLAEVASGRL 304
Query: 216 --LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
F+DE S LD+ + L+ L R + ++
Sbjct: 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L +DL + + +L+G+ G + ALMGP+G+GKSTL L+
Sbjct: 4 LEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV- 57
Query: 112 LSGTILLNG 120
G ILL+G
Sbjct: 58 ERGEILLDG 66
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.83 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.79 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.78 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.77 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.72 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.71 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.7 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.7 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.67 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.67 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.64 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.63 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.63 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.59 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.58 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.58 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.56 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.53 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.53 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.51 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.49 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.48 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.47 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.47 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.46 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.46 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.45 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.41 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.4 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.38 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.38 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.38 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.36 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.34 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.3 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.28 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.28 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.28 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.25 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.2 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.17 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.13 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.09 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.09 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.06 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.02 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.99 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.92 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.92 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.92 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.9 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.89 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.88 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.87 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.87 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.83 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.8 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.78 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.77 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.6 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.58 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.54 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.5 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.5 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.48 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.4 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.31 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.3 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.25 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.22 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.21 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.18 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.18 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.14 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.11 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.09 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.09 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.07 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.06 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.04 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.03 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.02 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.99 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.98 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.96 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.93 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.86 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.86 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.78 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.78 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.76 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.76 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.73 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.73 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.7 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.64 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.6 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.6 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.59 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.58 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.55 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.49 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.46 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.39 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.39 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.37 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.34 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.33 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.31 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.29 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.25 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.24 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.2 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.19 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.16 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.15 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.12 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.11 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.08 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.07 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.06 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.03 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.03 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.01 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.99 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.94 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.89 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.88 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.8 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.79 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.78 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.76 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.71 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.69 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.67 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.65 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.6 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.6 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.58 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.58 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.57 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.49 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.49 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.46 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.45 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.45 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.42 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.41 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.32 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.3 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.26 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.19 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.15 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.12 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.1 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.1 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.06 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.01 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.0 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.99 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.99 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.99 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.95 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.95 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.91 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.89 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.88 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.82 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.8 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.8 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.8 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.77 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.75 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.73 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.72 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.7 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.69 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.67 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.63 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.59 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.59 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.58 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.52 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.51 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.51 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.49 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.47 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.47 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.45 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.43 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.41 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.4 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.4 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.38 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.38 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.37 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.36 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.36 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.35 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.33 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.32 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.31 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.3 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.29 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.29 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.27 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.25 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.24 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.23 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.22 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.22 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.22 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.21 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.21 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.2 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.17 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.17 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.16 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.15 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.14 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.11 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.09 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.08 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.08 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.07 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.07 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.06 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.05 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.03 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.03 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.02 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.01 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.01 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.99 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.99 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.99 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.97 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.96 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.96 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.91 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.88 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.87 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.86 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.86 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.85 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.85 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.84 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.84 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.83 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.81 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.81 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.78 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.77 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.76 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.71 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.7 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.7 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.69 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.68 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.66 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.66 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.64 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.64 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.64 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.63 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.62 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.61 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.59 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.58 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.58 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.55 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.55 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.54 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.53 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.53 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.51 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.51 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.5 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.49 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.48 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.46 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.46 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.44 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.43 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.4 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.4 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.4 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.39 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.39 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.38 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.34 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.34 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.33 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.33 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.32 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.32 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.32 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.31 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.31 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.3 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.3 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.29 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.29 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.29 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.28 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.28 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.27 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.26 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.21 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.21 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.18 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.16 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.16 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.16 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.14 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.12 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.11 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.08 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.07 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.07 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.03 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.03 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.01 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.98 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.98 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.97 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.94 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.94 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.93 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.9 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.84 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.83 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.82 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.8 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.73 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.72 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.71 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.69 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.68 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.67 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.64 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.62 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.62 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.62 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.58 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.56 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.52 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.5 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.45 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.45 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.43 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.37 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.36 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.33 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 93.19 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.15 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 93.14 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.11 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.11 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.09 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.96 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.86 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 92.83 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.76 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.71 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.6 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.45 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.32 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 92.3 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 92.28 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.27 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.15 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 92.09 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.08 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 92.05 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.29 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.95 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 91.69 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 91.66 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.59 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 91.59 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 91.56 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 91.54 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 91.51 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 91.44 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.39 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 91.38 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 91.36 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 91.31 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 91.26 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=420.57 Aligned_cols=220 Identities=25% Similarity=0.366 Sum_probs=197.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||++.|..++ +.+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 24 mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 24 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESE 99 (366)
T ss_dssp CEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHH
T ss_pred eEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 599999999995321 2357999999999999999999999999999999999999986 99999999985321
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
++.+|||||++.+++.+||+||+.++...+ ..+.++.+++++++|+.+||.+..+++ +.+||||||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqkQR 171 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQR 171 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTSCHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHH
Confidence 356999999999999999999999987654 345677778899999999999887774 46799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+|||||+.+|++|||||||||||+.++..++++|+++++ .|.|||++||++ +++.++||||++|++|++++.|++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999976 599999999995 68899999999999999999999987
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 251 v~ 252 (366)
T 3tui_C 251 VF 252 (366)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=420.65 Aligned_cols=217 Identities=24% Similarity=0.388 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----C--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~----~-- 124 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999986 99999999875 1
Q ss_pred -CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
...+.+|||+|++.+||.+||+||+.|+...+ ..+.++.+++++++++.+||.+..++++ .+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHH
Confidence 12357999999999999999999999986543 2345566788999999999998887754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+..+.++++.|+++. +.|.|+|++|||. +++..+||||++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999888875 4799999999995 789999999999999999999999887
Q ss_pred HH
Q 008669 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=421.61 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=197.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999986 9999999998532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.+|||+|++.+||.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..+++ +++|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHHHHHHH
Confidence 67999999999999999999999987654 345677788999999999999887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++|||. +++..+||||++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 78999999999999999999999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-50 Score=395.55 Aligned_cols=220 Identities=25% Similarity=0.352 Sum_probs=189.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
|+++||++.|..+. ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999986 99999999875321
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerq 201 (557)
++.+|||+|++.+++.+||+||+.++...+.....+..+..+++.++++.++|.+.. +.. +.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHH
Confidence 135999999999999999999999986543222345566677889999999998753 554 4679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ + +.++||++++|++|+++..++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999764 99999999996 4 46899999999999999999887
Q ss_pred hH
Q 008669 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 64
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=399.34 Aligned_cols=216 Identities=29% Similarity=0.436 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CC-
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LS- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---~~- 126 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999998 3467999999999999999999999999999999999999986 999999998763 11
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 127 ---FGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
++.++||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHH
Confidence 246999999999999999999999964 332 2344555677899999999988777754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987899999999995 678889999999999999999998776
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=399.89 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 48999999998 3467999999999999999999999999999999999999986 9999999987531
Q ss_pred -------------CcccEEEEccCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 008669 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (557)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~ 190 (557)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP--- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc---
Confidence 1246999999999999999999999864 322 23445556788999999999887 77754
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++
T Consensus 152 --~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 152 --VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999987899999999995 678889999999999
Q ss_pred CeEEEEcCcchHH
Q 008669 271 GKTVYFGETSAAF 283 (557)
Q Consensus 271 G~iv~~G~~~~~~ 283 (557)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=389.23 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred -----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2334455677899999999998877754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+ ++||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987899999999995 455 89999999999999998863
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=402.94 Aligned_cols=218 Identities=27% Similarity=0.420 Sum_probs=191.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.|. +.+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 599999999982 2345999999999999999999999999999999999999986 9999999998631
Q ss_pred --CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.+|||||++. .+..+||+||+.|+.... ..+.++.+++++++++.+||.+..++.+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 1356999999863 344789999999987643 3456677788999999999988877754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +++.++||||++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999996 57888999999999999999999988
Q ss_pred HHH
Q 008669 282 AFE 284 (557)
Q Consensus 282 ~~~ 284 (557)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-49 Score=394.35 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=192.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 48999999998 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.++||+|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976543 2234444567889999999988877754 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999995 67888999999999999999999887654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=411.68 Aligned_cols=217 Identities=25% Similarity=0.386 Sum_probs=194.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999986421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.+|||+|+..+||++||+||+.|+.+.+ ..+..+.+++++++++.+||.+..+++ +++|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHHHH
Confidence 2357999999999999999999999987653 234566677899999999999887775 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+ .|.|+|++|||+ +++..+||++++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999976 499999999995 6889999999999999999999998
Q ss_pred hHHH
Q 008669 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++..
T Consensus 226 ~l~~ 229 (372)
T 1g29_1 226 EVYD 229 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=411.72 Aligned_cols=216 Identities=25% Similarity=0.411 Sum_probs=192.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r 75 (359)
T 2yyz_A 4 IRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYR 75 (359)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGT
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhC
Confidence 8999999998 3567999999999999999999999999999999999999986 9999999987532 236
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.+|||+|+..+|+++||+||+.|+.+.+ ..+..+.+++++++++.+||.+..+++ +++|||||||||+||||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVALARA 147 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999976433 233444567899999999999887775 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++|||+ +++..+|||+++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999976 499999999995 68899999999999999999999988753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=395.74 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 59999999998 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (557)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++.+ .+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 24599999999999999999999987532 1110 0123344567899999999988877754 56
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5778899999999999999
Q ss_pred EEcCcch
Q 008669 275 YFGETSA 281 (557)
Q Consensus 275 ~~G~~~~ 281 (557)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999887
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=411.44 Aligned_cols=216 Identities=26% Similarity=0.414 Sum_probs=194.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r 75 (362)
T 2it1_A 4 IKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDR 75 (362)
T ss_dssp EEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGT
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHC
Confidence 8999999988 3467999999999999999999999999999999999999986 9999999987532 236
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.+|||+|+..+||++||+||+.|+.+.+ ..+.++.+++++++++.+||.+..+++ +++|||||||||+||||
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAIARA 147 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999987653 234566678899999999999887775 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++|||+ +++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999764 99999999995 68899999999999999999999988753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=409.32 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=195.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...|+++||++.|. +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 34699999999872 2356999999999999999999999999999999999999986 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.+|||+|+..+||.+||+||+.|+...+ ..+.++.+++++++++.+||.+..+++ +++|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 234566678899999999999888775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++|||+ +++..+||++++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999764 99999999995 7889999999999999999999998874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=410.68 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEEccCccccc--ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008669 51 RLTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
.|+++||++.| +++. +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 38999999998 3466 999999999999999999999999999999999999986 9999999986421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++.+|||+|+..+|+++||+||+.|+.+.+ ..+.++.+++++++++.+||.+..++++ ++||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~ 146 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQ 146 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 2367999999999999999999999986543 2345666788999999999998887754 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+ .|+|+|++|||+ +++..+||++++|++|+++..|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999976 499999999995 688999999999999999999999
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 226 ~~l~ 229 (353)
T 1oxx_K 226 EDLY 229 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=387.99 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
++.++||+|++.+++.+||+||+.++.... ....+.+++++++++.++ |.+..++. +.+|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 235999999999999999999999864211 122344566788999994 87766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999995 6788999999999999999999887653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-49 Score=411.10 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 39999999999 3467999999999999999999999999999999999999986 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.+|||+|+..+|+++||+||+.|+.+.+ ..+.++.+++++++++.+||.+..+++ +++|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999975432 234566677899999999999887774 4679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||+ +++..+||+|++|++|+++..|+++++..
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68899999999999999999999988753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=392.99 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=190.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
..|+++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 369999999998 4578999999999999999999999999999999999999986 99999999986421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ .+|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 245999999999888899999999875432 12234567889999999998877754 579999999999
Q ss_pred HHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 205 ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++.++|||+++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999765 67999999995 6888999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 988764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=400.83 Aligned_cols=246 Identities=26% Similarity=0.352 Sum_probs=198.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.++++|++++++.++...... +. . .. ......|+++||++.|. +.+.+|+||||+|++
T Consensus 20 ~~~~~~~ri~~~l~~~~~~~~~~--~~-----------~--~~-~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~~ 79 (306)
T 3nh6_A 20 HMFIDMENMFDLLKEETEVKDLP--GA-----------G--PL-RFQKGRIEFENVHFSYA----DGRETLQDVSFTVMP 79 (306)
T ss_dssp CTTCCHHHHHHHHHHHHSCCCCT--TC-----------B--CC-CCSSCCEEEEEEEEESS----TTCEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHhCCccccccc--cc-----------c--cc-CCCCCeEEEEEEEEEcC----CCCceeeeeeEEEcC
Confidence 57889999999998766543200 00 0 00 01123599999999983 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++... ++.++||+|++.+|+. ||+||+.++...
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~- 154 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT- 154 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc-
Confidence 9999999999999999999999999986 99999999986431 3569999999999865 999999986421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
... +.+.+.++..++. +..++.+|. .+.+|||||||||+|||||+.+|+||||||||++||+.+
T Consensus 155 ----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 155 ----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp ----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 112 2244445555543 356777775 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++.+ ++|+|+++|++ +.+.. ||+|++|++|++++.|+++++..
T Consensus 226 ~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 226 ERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999864 79999999996 45554 99999999999999999988764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=403.75 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=188.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.| +++ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 7899999988 345 999999999999999999999999999999999999986 9999999987532 135
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.+|||+|+..+|+++||+||+.|+...+. .+.. ++++++++.++|.+..++++ ++|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 69999999999999999999999876431 1122 67889999999998887754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 6889999999999999999999998764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-48 Score=381.42 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.| ++ +|+|+|+++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6889999998 22 59999999999 999999999999999999999999986 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999864321 11223567889999999988777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ +++..+||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 489999999995 6788999999999999999999987764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=386.61 Aligned_cols=221 Identities=27% Similarity=0.363 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Ccc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (557)
.++++|+++.|..++...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 48899999998310000156999999999999999999999999999999999999886 9999999987531 235
Q ss_pred cEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHHHHHHH
Q 008669 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++||+|++ ..++.+||+||+.++.... .+..+.+++++++++.+||. +..++.+ ++|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~l 149 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAI 149 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHH
Confidence 699999995 5667789999999874321 11122345688999999998 7777654 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999987799999999996 56778999999999999999999887654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=381.00 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~--~~~~~~~~G~I~~~G~~~~~~-- 126 (557)
.++++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 48999999998 346799999999999999999999999999999999998 5664 99999999875321
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcccCC-CCHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGER 200 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-LSgGer 200 (557)
+..++||+|++.+++.+||+||+.+.............+..++++++++.+|| .+..++.+ .. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 13489999999999999999999986532111112234445678899999999 46677644 46 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEcCc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~ 279 (557)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999976799999999996 566777 599999999999999987
Q ss_pred c
Q 008669 280 S 280 (557)
Q Consensus 280 ~ 280 (557)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=387.81 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=185.2
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--~- 125 (557)
.+.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. .
T Consensus 19 ~~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90 (279)
T ss_dssp CEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---C
T ss_pred CceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccC
Confidence 3469999999998 3467999999999999999999999999999999999999986 999999998753 1
Q ss_pred ----CcccEEEEccCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008669 126 ----SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++||+|++.+ .+.+||+||+.++...... ......+.+++++++++.+||.+..++.+ .+||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 165 (279)
T 2ihy_A 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTG 165 (279)
T ss_dssp CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHH
T ss_pred CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 13569999999754 3457999999885321100 01112344567889999999988877755 569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ +++.++||++++|++|++++.
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999997779999 9999995 577889999999999999999
Q ss_pred cCcchH
Q 008669 277 GETSAA 282 (557)
Q Consensus 277 G~~~~~ 282 (557)
|+++++
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 988765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=373.17 Aligned_cols=209 Identities=27% Similarity=0.338 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCcc-cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
.|+++|+++.| + ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.
T Consensus 4 ~l~i~~l~~~y-----~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYY-----QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQS 67 (253)
T ss_dssp EEEEEEEEEEE-----TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSC
T ss_pred eEEEeeEEEEe-----CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ecc
Confidence 48999999998 3 467999999999999999999999999999999999999986 999982 256
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
++||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARA 142 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHH
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 99999999999899999999987532111 00112334567889999999988777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+ ++.|+++++
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999999999999999876 99999999995 67889999999999999 999988765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=376.89 Aligned_cols=221 Identities=28% Similarity=0.346 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~~-- 126 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 49999999998 3467999999999999999999999999999999999984 453 89999999875321
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-LR---LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++.++||+|++.+++.+||.||+.+... .. .....+..+.+++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1248999999999999999999987542 11 111223444556789999999996 45665432 14999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEE
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (557)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976799999999996 556665 899999999999999
Q ss_pred cCcchHHH
Q 008669 277 GETSAAFE 284 (557)
Q Consensus 277 G~~~~~~~ 284 (557)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99887653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=379.68 Aligned_cols=217 Identities=29% Similarity=0.374 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||++.|.. ++.+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 16 ~l~~~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPN--HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTT--CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 4999999998821 01267999999999999999999999999999999999999986 99999999875321
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCcccCCCCHH
Q 008669 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgG 198 (557)
++.++||+|++.+++ .||+||+.++.... . ...+ ....+.++++.+ |+.+..+. .+.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 246999999998887 49999998863211 1 1111 122345677777 56555554 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ +.+. .||++++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 589999999995 4554 59999999999999999
Q ss_pred CcchHHH
Q 008669 278 ETSAAFE 284 (557)
Q Consensus 278 ~~~~~~~ 284 (557)
+++++..
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=370.49 Aligned_cols=214 Identities=27% Similarity=0.452 Sum_probs=179.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
..++++||++.|. ++++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 6 ~~~~~~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4689999999872 12357999999999999999999999999999999999999986 99999999986421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCCH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISG 197 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSg 197 (557)
++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..++ .++. .+.+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCH
Confidence 246999999998887 599999987521 111 2346677788888654433 3332 4678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 6999999999964 44 469999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987763
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=369.02 Aligned_cols=205 Identities=27% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++. .+|+|+|+++++||+++|+||||||||||+|+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4889999863 589999999999999999999999999999999999987 5 9999999875321
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
++.++||+|++.+++.+||+||+.++.. . ... +++++++++.+||.+..++.+ .+||||||||++|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 2469999999999999999999987521 1 111 456888999999988777654 5799999999999
Q ss_pred HHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 206 a~aL~~~p~-------llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+..+||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999995 67789999999999999999998
Q ss_pred cchH
Q 008669 279 TSAA 282 (557)
Q Consensus 279 ~~~~ 282 (557)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=370.65 Aligned_cols=212 Identities=26% Similarity=0.431 Sum_probs=179.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.|. +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999998872 2367999999999999999999999999999999999999986 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------vg~~~~~~LSgGe 199 (557)
++.++||+|++.+++. ||+||+.++.. + ... ++++.++++.+++.+..++. ++ ..+.+|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999988875 99999987521 1 111 23467788889987765443 22 2467899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++ +.+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 455 46999999999999999988
Q ss_pred chHH
Q 008669 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=362.34 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=173.4
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
+..|+++|+++.| ++ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+....++
T Consensus 8 ~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 4579999999988 34 7999999999999999999999999999999999999886 9999999987532346
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||++. ++. +.+||||||||++||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 147 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999998765421 11 11 3567889999999876 554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..++|+++++ .|++
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999976789999999996 5678888888765 3544
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=365.17 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Cccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (557)
++++|+++.|.... ..+.+|+|+|++++ ||+++|+||||||||||+|+|+|++ |+ +|+|.++|++... .++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999984100 01679999999999 9999999999999999999999999 86 9999999987531 2457
Q ss_pred EE-EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 008669 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.+ .+||||||||++|||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 99 99999887 789999999876542 11 134578899999998 7777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC-eEEEeeCCeEEEEcCcchHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++ +++.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999998853 999999996 57788999 99999999999999988765
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=364.31 Aligned_cols=214 Identities=28% Similarity=0.398 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.|.. ...+.+|+|||+++++||+++|+||||||||||+|+|+|++++ +|+|.++|.+...
T Consensus 17 ~l~i~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPK--QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTT--CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 4999999998831 1124699999999999999999999999999999999999864 7999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 198 (557)
.++.++||+|++.+++ .||+||+.++.. .... +.+.+.++.+++. +..++.++. .+..||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHH
Confidence 1356999999999886 599999987521 1111 2345566666653 334555543 56789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++. .+ ..||++++|++|++++.|+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999964 899999999964 44 4699999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++..
T Consensus 237 ~~~l~~ 242 (260)
T 2ghi_A 237 HKDLLK 242 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=404.20 Aligned_cols=247 Identities=25% Similarity=0.315 Sum_probs=199.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|...... ... .. ......++++|+++.|+. +++.+|+|+|+++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~--------------~~~-~~-~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGV--------------GAQ-PI-EIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCT--------------TCC-CC-CCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCC--------------Ccc-cc-CCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 46789999999998776643200 000 00 111235999999998842 245799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++.... +++++||+|++.+|+. ||+||+.++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 440 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-- 440 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 99999999986431 3569999999999987 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+. +.+.+.++..++ .+..|+.+|+ ++.+||||||||++|||||+++|++|+|||||||||+.+
T Consensus 441 ---~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 441 ---TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp ---SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred ---CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1122 224444444443 4567888876 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 513 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999885 4799999999974 44 5699999999999999999988754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=408.63 Aligned_cols=247 Identities=24% Similarity=0.389 Sum_probs=198.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+... .+ . .. ......++++|+++.|+. +++.+|+|+|+++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~--~~-~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA---------L--AL-PNVEGSVSFENVEFRYFE---NTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC---------B--CC-SCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc---------c--cc-CCCCCcEEEEEEEEEcCC---CCCcceeceEEEEcC
Confidence 46789999999999776543200 00 0 00 011235999999998842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++.... +++++||||++.+|+. ||+||+.++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-- 442 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-- 442 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 99999999885421 3579999999999976 99999987532
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++ +.+.++..+ +++..|+.+|+ ++.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 ---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 443 ---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 112222 223333333 44567888876 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +|+|+|+++|++ +. ...||||++|++|++++.|+++++.+
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l-~~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKI-PT-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCH-HH-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecCh-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999984 589999999996 34 46899999999999999999988764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=399.61 Aligned_cols=246 Identities=27% Similarity=0.383 Sum_probs=200.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.++..+. +.. . .. .....++++|+++.|.. +++.+|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~----------~---~~-~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE----GKR----------V---ID-RATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC----CCB----------C---CS-CCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC----CCC----------C---CC-CCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 467899999999987665321 000 0 00 11224999999998831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++.... ++.++||||++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999986 99999999986421 3569999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+ ++++++.++.+++. +..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 122 23466677777764 356777876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999865 899999999974 44 5799999999999999999888754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=399.16 Aligned_cols=246 Identities=28% Similarity=0.387 Sum_probs=199.6
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++..+. +..+ .. .....++++|+++.|.. +++.+|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~~-------------~~-~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKYE-------------AE-RVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCCC-------------CC-CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 567899999999987655321 0000 00 11235999999999831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++... .+++++||||++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987532 13579999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+ ++++++.++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++|+|||||++||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 234667777777643 46777776 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++.+ |+|+|+++|++ +.+ +.||+|++|++|++++.|+++++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRL-STI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999864 89999999996 344 5799999999999999999887653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=353.69 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=167.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.|.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998731 2467999999999999999999999999999999999999986 99999998 48
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv 203 (557)
+|++|++.+++. ||+||+.++.. ... .+..+.++.+++.+. .++.++. .+.+||||||||+
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999998886 99999987531 111 112334444454332 2333433 4578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++ +.+ ..||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45554 489999999995 455 45999999999999999998766
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=405.59 Aligned_cols=245 Identities=25% Similarity=0.364 Sum_probs=196.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++..+. .+. .. . ......++++|+++.|. +++.+|+|+|+++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~---~~~----------~~---~-~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDD---PDA----------VE---L-REVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC---SSC----------CC---C-CSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCC---CCC----------CC---C-CCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 467899999999987765431 000 00 0 11123599999999883 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||+++|+||||||||||+|+|+|+++|+ +|+|.+||++.... +++++||+|++.+|+. ||+||+.++...
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 455 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG- 455 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 99999999986431 3579999999999875 999999876321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.+.++ +.+.++..+ +.+..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 456 ----~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 456 ----ATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ----CCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ----CCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11212 333333333 34466777775 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +|+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999975 45 4599999999999999999988754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=354.77 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=165.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.|.. .++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .++
T Consensus 4 l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SVA 69 (237)
T ss_dssp EEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CEE
T ss_pred EEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EEE
Confidence 899999998821 1467999999999999999999999999999999999999885 99999998 389
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
||+|++.+ +.+||+||+.++... .... .+.+.+ +.+.+++.+ ..++.++ ..+.+|||||||||+|||
T Consensus 70 ~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 70 YVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp EECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHH
T ss_pred EEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHH
Confidence 99999865 578999999886321 1111 111111 222333322 2233333 356789999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||++. .+ ..||++++|++|++++.|+++++..
T Consensus 141 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999995 443 5899999999974 44 5799999999999999999877643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=378.26 Aligned_cols=214 Identities=24% Similarity=0.301 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
..|+++||++.|.. +++.+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999832 24679999999999999999999999999999999999986 4 89999999875421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------cccCCCCHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgG 198 (557)
++.++||+|++.+|+ +||+||+.+.. ... ++++.++++.++|.+..+++... ....+||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 357999999999997 59999996421 111 24577899999998766654321 123349999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+.|+|++||+. + ....||||++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~-e-~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI-E-AMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS-G-GGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH-H-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 579999999995 3 456799999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++..
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=412.72 Aligned_cols=249 Identities=26% Similarity=0.346 Sum_probs=205.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+.....+. ........|+++|+++.|+. .+++.+|+|+|+++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~---------------~~~~~~g~I~~~nvsF~Y~~--~~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGR---------------KDMKIKGDITVENVHFTYPS--RPDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCC---------------CCCCCCCCEEEEEEEECCSS--STTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCccccccccccc---------------cCCCCCCcEEEEEeeeeCCC--CCCCceeeceEEeecC
Confidence 578899999999998877553111100 01112235999999999853 2356799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+++|.|+++|. +|+|.+||.+++.. +++++||+|++.+|.. |++|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999996 99999999986532 3579999999999987 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.+ ++.+.++..+ |++..||.||+ ++..||||||||++||||+++||+|||||||||+||+.+
T Consensus 518 ---~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 12332 3444444443 56788999997 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +|+|+|+++|+++ ..+.||+|++|++|+++++|+.+|+..
T Consensus 590 e~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999885 5899999999975 468899999999999999999998764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=425.51 Aligned_cols=250 Identities=26% Similarity=0.407 Sum_probs=204.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|++|+.++++.+|..+..... ... .+....|+|+|++++|+.+ .+.++|+||||+|+|
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~------------~~~----~~~~g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLA------------GEK----KKLYGKVIFKNVRFAYPER--PEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCC------------SBC----CCCCCCEEEEEEEECCTTS--CSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCC------------CCC----CCCCCeEEEEEEEEeCCCC--CCCccccceeEEECC
Confidence 3678899999999987775431110 000 0112359999999998432 345799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+++|.|+++|. +|+|.+||.+++. .+++++||||++.+|+. |++|||.|+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999996 9999999998653 24679999999999987 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+...+.+ .+.+.++..+ |++.+||.||+ .+.+||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1179 -~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 2223333 3445555554 46778999997 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+++++|+++++++
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 58999999999753 57799999999999999999998875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=409.08 Aligned_cols=251 Identities=27% Similarity=0.393 Sum_probs=199.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+.....+. .. ......++++|+++.|+.+ .++.+|+|||+++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~-----------~~----~~~~g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGH-----------KP----DNIQGNLEFKNIHFSYPSR--KEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCC-----------CC----TTCCCCEEEEEEEECCSST--TSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCC-----------CC----CCCCCeEEEEEEEEEcCCC--CCCcceecceEEEcC
Confidence 578899999999988776442110000 00 0112359999999998421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||++||+||||||||||+++|+|+++|+ +|+|.+||+++... ++.+|||+|++.+|+. ||+||+.++..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-- 489 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 99999999986431 3569999999999987 99999999742
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
..+.++..+.. .+.++ .+.+..||.+|+ ++.+||||||||++|||||+.+|+|||||||||+||+.++.
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 490 ---DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 12232222211 22222 345677888886 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+.+.|+++. +|+|+|+++|++ +.+ ..||+|++|++|++++.|+.+++.+
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 589999999995 455 4599999999999999999988764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=345.44 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=154.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++|+++. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 5899999874 256999999999999999999999999999999999999885 99999987 48
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv 203 (557)
+||+|++.+++. ||+||+. +. . ... ..+.+.++.+++.+. .++.++. .+.+||||||||+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999988885 9999997 32 1 111 123344455555332 2333332 4578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 5554 589999999996 455 56999999999999999998876
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=399.30 Aligned_cols=251 Identities=27% Similarity=0.414 Sum_probs=199.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+.....+.. + ......++++|+++.|+. ..++.+|+|+|+++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~-----------~----~~~~g~i~~~~v~~~y~~--~~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGLK-----------P----NMLEGNVQFSGVVFNYPT--RPSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCCC-----------T----TTTSCCEEEEEEEBCCSC--GGGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCccccccccccc-----------c----cCCCCcEEEEEEEEECCC--CCCCeeecceeEEEcC
Confidence 4678999999999987765431111000 0 011235999999998842 1234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||++||+||||||||||+++|+|+++|+ +|+|.+||+++... +++++||||++.+|+. ||+||+.++...+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC
Confidence 9999999999999999999999999986 99999999886421 3579999999988864 9999998763211
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++. .+.++.. .+.+.+||.+|+ .+.+||||||||++|||||+++|++|+|||||+|||+.+
T Consensus 1135 ---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1135 ---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp ---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1233332 2223332 345678999986 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++ .+|+|+|+++|++. .+ ..||||++|++|++++.|+++++.+
T Consensus 1207 ~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1207 EKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 45899999999974 45 5699999999999999999988764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=345.48 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=177.7
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ ..
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DL 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CC
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------ee
Confidence 3569999999887 22 3689999999999999999999999999999999999986 899876 14
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|+||+....+.+||.|++....... ....++++++++.+||.+..++.+ .+|||||||||+|||+
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999988778899999987641110 011356788999999988777755 4699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC--CeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||. .++..+|||+++|++ |+++..|+++++..
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999974 699999999995 788899999999986 88889999998765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=342.35 Aligned_cols=206 Identities=26% Similarity=0.291 Sum_probs=176.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CC
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------Cc
Confidence 3569999999887 22 3689999999999999999999999999999999999886 899875 14
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++||+|+....+.+||.|++......... ..++++++++.+++.+..++.+ ..|||||||||+|||+
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 699999998877889999988754111100 1245778899999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC--CeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||. +++..+||||++|++ |+++..|+++++..
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999974 689999999994 788999999999986 88889999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=335.55 Aligned_cols=208 Identities=20% Similarity=0.284 Sum_probs=175.1
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 4568999999887 22 4688889999999999999999999999999999999986 99998764 3
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|+......+||+||+.+...... .. ....++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999776678899999987422111 01 1235678889999988777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC--CeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||. +++..+||||++|++ |.....+++.++..
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999999999976 689999999995 788999999999986 66667777766543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=330.52 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=167.3
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 55 KDLTVMVTLSNGETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
+++++.|. ..+.+++|+|+++++| |+++|+||||||||||+|+|+|+++|+ +|+. . ....
T Consensus 350 ~~~~~~y~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYP----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLN 414 (608)
T ss_dssp SSSCCEEC----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCC
T ss_pred cceeEEec----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCc
Confidence 34455552 2345789999999999 789999999999999999999999986 7752 1 1246
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008669 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
++|++|+.......||+|++.... +. ... ....++++++.++|.+..++.+ .+|||||||||+|||+|
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 899999976666679999875432 11 111 1245678899999998877754 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC--CeEEEEcCcchHHH
Q 008669 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (557)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||. +++..+||||++|++ |+++..|+++++..
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999999864 699999999995 789999999999996 99999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.59 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=166.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...+...|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+.... .
T Consensus 433 ~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~-~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE-C 495 (986)
T ss_dssp SCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-S
T ss_pred cceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-e
Confidence 4467778999988 45679999999999999999999999999999999995 222 34332111 2
Q ss_pred cEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 008669 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+++|++|+. .+++.+||.||+.+ ... .. ++++.++++.+||. +..++.+ .+||||||||++||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLA 560 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALA 560 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHH
Confidence 478999984 67889999999975 111 11 45688999999995 5666655 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHHH
Q 008669 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (557)
|+|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||+ ..++.++||++++|++|+++ +.|++++...
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999999988 58999999999 47888999999999999997 6899887653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=331.63 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=157.0
Q ss_pred EeEEEEEEccCcccc-cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCC
Q 008669 55 KDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTK 124 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I---------~~~G~~~~ 124 (557)
+|+++.| +.+ .+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+..
T Consensus 95 ~~ls~~y-----g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~ 165 (607)
T 3bk7_A 95 EDCVHRY-----GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQ 165 (607)
T ss_dssp GSEEEEC-----STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHH
T ss_pred CCeEEEE-----CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehh
Confidence 7778877 223 4899999 99999999999999999999999999999886 7875 45665421
Q ss_pred C-------CcccEEEEccCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008669 125 L-------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (557)
Q Consensus 125 ~-------~~~~~~yv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (557)
. ....+++++|.....+ ..||+|++... .. .++++++++.+||.+..++.+ .+
T Consensus 166 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~-----~~ 228 (607)
T 3bk7_A 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDREL-----HQ 228 (607)
T ss_dssp HHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBG-----GG
T ss_pred hhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCCh-----hh
Confidence 1 1234789988743322 13999998641 00 134778999999998888755 46
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||++ ..+..++|+|++|+++.
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999999988899999999995 67889999999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=327.52 Aligned_cols=194 Identities=25% Similarity=0.328 Sum_probs=157.4
Q ss_pred EEE-EeEEEEEEccCcccc-cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECC
Q 008669 52 LTW-KDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNG 120 (557)
Q Consensus 52 l~~-~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I---------~~~G 120 (557)
.++ +||++.| +++ .+|+|+| ++++||+++|+||||||||||+|+|+|+++|+ +|++ .++|
T Consensus 21 ~~~~~~ls~~y-----g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 21 EQLEEDCVHRY-----GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp ---CCCEEEEC-----STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTT
T ss_pred hhHhcCcEEEE-----CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCC
Confidence 455 5888887 233 4899999 99999999999999999999999999999886 7875 3566
Q ss_pred EeCC-------CCcccEEEEccCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 008669 121 HKTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (557)
Q Consensus 121 ~~~~-------~~~~~~~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (557)
.+.. .....+++++|....++. .|+.|++.... ..++++++++.+||.+..++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~--- 156 (538)
T 1yqt_A 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREI--- 156 (538)
T ss_dssp STHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBG---
T ss_pred ccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCCh---
Confidence 5421 112357899987543332 38999885321 0134778999999988777755
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||+. .++..+||+|++|++
T Consensus 157 --~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYG 233 (538)
T ss_dssp --GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcC
Confidence 46999999999999999999999999999999999999999999999988899999999994 688999999999986
Q ss_pred Ce
Q 008669 271 GK 272 (557)
Q Consensus 271 G~ 272 (557)
|.
T Consensus 234 ~~ 235 (538)
T 1yqt_A 234 EP 235 (538)
T ss_dssp ET
T ss_pred cc
Confidence 53
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=330.30 Aligned_cols=208 Identities=27% Similarity=0.315 Sum_probs=139.9
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNAF----LSGTILLNGHK 122 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl---------------------~~L~g~~~~~~~----~~G~I~~~G~~ 122 (557)
.+.+|+||||+|++||+++|+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46699999999999999999999999999998 888888776411 14667777754
Q ss_pred CCC-CcccEEEEccCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHH
Q 008669 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIE 176 (557)
Q Consensus 123 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~ 176 (557)
... ..+.++||+|... .++.+||+||+.+............ .+..++ .++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHH
Confidence 321 1233455555432 2467899999987533221110000 001111 235888
Q ss_pred cCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 008669 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (557)
Q Consensus 177 lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (557)
+||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 46644 5699999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 254 ~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
+ +. ...||++++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5 44 4569999999 899999999998764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=334.35 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=163.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.|. +..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|+++|. .+
T Consensus 670 ~mL~v~nLs~~Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 4599999998872 11367999999999999999999999999999999999999986 999999863 25
Q ss_pred EEEEccCCCC----CCCCCHHHHHHHHhhccC------------C-----------------------------------
Q 008669 130 AAYVTQDDNL----IGTLTVRETISYSARLRL------------P----------------------------------- 158 (557)
Q Consensus 130 ~~yv~Q~~~l----~~~lTV~e~l~~~~~~~~------------~----------------------------------- 158 (557)
++|++|++.. ....|++|++.+...... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997531 234588888865321000 0
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 008669 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (557)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~ 185 (557)
... + ....+++++++++.+||.+. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013467889999999753 355
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008669 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
. +++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++ +.+.++||++
T Consensus 898 ~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 R-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp C-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred C-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 4 4579999999999999999999999999999999999999999988765 57999999994 6788999999
Q ss_pred EEeeCCeEEEEcC
Q 008669 266 YLLSGGKTVYFGE 278 (557)
Q Consensus 266 ~~L~~G~iv~~G~ 278 (557)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=317.36 Aligned_cols=196 Identities=26% Similarity=0.315 Sum_probs=148.9
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~----------------------g~~~~~~~~~G~I~~~G~~~~~ 125 (557)
.+.+|+|||++|++||+++|+||||||||||+++|. |+..+ .|.|.++|.+...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~ 409 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGR 409 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCC
Confidence 356899999999999999999999999999998764 22222 4678888765321
Q ss_pred Cc----------------------------------------------ccEEEEccCCCCCC------------------
Q 008669 126 SF----------------------------------------------GTAAYVTQDDNLIG------------------ 141 (557)
Q Consensus 126 ~~----------------------------------------------~~~~yv~Q~~~l~~------------------ 141 (557)
.. ...|+++|+..+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (670)
T 3ux8_A 410 TPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRET 489 (670)
T ss_dssp STTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHH
T ss_pred CCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhh
Confidence 00 01233444332222
Q ss_pred --------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 008669 142 --------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 142 --------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+||+||+.+.... . ..++..+.++.++|.+ ..++ .+.+|||||||||+||
T Consensus 490 ~~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 490 LEVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLA 555 (670)
T ss_dssp HTCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHH
T ss_pred hheeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHH
Confidence 47999999875321 1 1244567888899864 2344 4457999999999999
Q ss_pred HHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEc
Q 008669 207 LEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFG 277 (557)
Q Consensus 207 ~aL~~~p---~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 277 (557)
|||+.+| ++|||||||+|||+.++..+++.|++++++|+|||++||++ +. ...||||++| ++|++++.|
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEec
Confidence 9999987 59999999999999999999999999988899999999996 44 4679999999 899999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 634 ~~~~~~ 639 (670)
T 3ux8_A 634 TPEEVA 639 (670)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-32 Score=303.47 Aligned_cols=188 Identities=26% Similarity=0.305 Sum_probs=145.4
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-----Ccc--c
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL-----SFG--T 129 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-----------~~G~~~~~-----~~~--~ 129 (557)
....|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+|. +.|.+... ..+ .
T Consensus 90 ~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (608)
T 3j16_B 90 NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165 (608)
T ss_dssp TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhh
Confidence 345678777 58999999999999999999999999999986 78872 33322100 001 1
Q ss_pred EEEEccCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 130 AAYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 130 ~~yv~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.+|.... -+..++.+++.... . ...++++++++.+||.+..++.+ .+|||||||||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv 230 (608)
T 3j16_B 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRF 230 (608)
T ss_dssp CEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHH
T ss_pred hhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHH
Confidence 2233443211 12235666554321 0 11256888999999998888755 46999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
+||+||+.+|++|||||||++||+.++..+.+.|++++++|+|||+++|+. +++..++|+|++|++|..++
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999999988899999999995 78999999999999876554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=294.07 Aligned_cols=173 Identities=21% Similarity=0.264 Sum_probs=139.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCCC-------CcccEEEEccC----
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-------SFGTAAYVTQD---- 136 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~~~yv~Q~---- 136 (557)
.++||++||+||||||||||+|+|+|+++|+ +|+| .++|.+... ....+....|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 5699999999999999999999999999986 8988 566754310 11123444443
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE
Q 008669 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216 (557)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ll 216 (557)
+.++. .|++|++.... .+++++++++.+|+.+..++.+ ++|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 33333 38888764321 0134678899999998888765 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 217 llDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 99999999999999999999999976 89999999995 7899999999999876543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=300.56 Aligned_cols=208 Identities=25% Similarity=0.309 Sum_probs=158.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~-g~~---------~~~~--~~~G--- 114 (557)
..|+++|++ ...|+|||++|++||+++|+|+||||||||+++|. |.+ .+.. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357777764 23699999999999999999999999999999853 211 1211 1234
Q ss_pred ---EEEECCEeCCCC------------------------cccEEEEccCCCCC----------------------C----
Q 008669 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (557)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~~~yv~Q~~~l~----------------------~---- 141 (557)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 588888764210 02346777753221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 008669 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (557)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 192 (557)
.+||.|++.|... . .. ..++.++++.+||.. ..+.. +
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----A 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----h
Confidence 4578888876421 1 11 234568899999986 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe-
Q 008669 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L- 268 (557)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999988899999999995 454 689999999
Q ss_pred -----eCCeEEEEcCcchHH
Q 008669 269 -----SGGKTVYFGETSAAF 283 (557)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (557)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999988764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=295.23 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=152.0
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC-----
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl---------~~L~g~~~~~~---~~~------G~I~~~G~~~~~----- 125 (557)
...|+|||+++++|++++|+|+||||||||+ +.+.+...+.. ..+ +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444332210 012 334555433210
Q ss_pred -----------------------------------------CcccEEEEccCCCCCC-----------------------
Q 008669 126 -----------------------------------------SFGTAAYVTQDDNLIG----------------------- 141 (557)
Q Consensus 126 -----------------------------------------~~~~~~yv~Q~~~l~~----------------------- 141 (557)
..+..||+.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012467777766554
Q ss_pred ---------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 008669 142 ---------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 142 ---------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 212 (557)
.+||.|++.|.... ....++.++|+.+||.... ++ ..+.+|||||||||+|||+|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 1234577899999996421 22 24567999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 213 p---~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999988899999999995 444 569999999 899999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=296.04 Aligned_cols=208 Identities=29% Similarity=0.328 Sum_probs=155.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHH-HHcCC-------CCC------------
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRL-------ASN------------ 109 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~-L~g~~-------~~~------------ 109 (557)
..|+++|+++ ..|+|||++|++||+++|+|+||||||||++. |+|.+ .+.
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588888863 26999999999999999999999999999996 76543 110
Q ss_pred ---CCcee-------EEEECCEeCCCCc------------------------ccEEEEcc--------------------
Q 008669 110 ---AFLSG-------TILLNGHKTKLSF------------------------GTAAYVTQ-------------------- 135 (557)
Q Consensus 110 ---~~~~G-------~I~~~G~~~~~~~------------------------~~~~yv~Q-------------------- 135 (557)
...+| .|.++|.++.... +..||.++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 11367 7889987642110 01122221
Q ss_pred --CCCCC------------------------CC--------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 008669 136 --DDNLI------------------------GT--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (557)
Q Consensus 136 --~~~l~------------------------~~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (557)
+..++ .. +|+.|++.|... ....+++.++++.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCc
Confidence 11111 12 345555444211 112346788999999976
Q ss_pred c-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 008669 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (557)
Q Consensus 182 ~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 257 (557)
. .++ .+..|||||||||+||++|+.+ |++|||||||+|||+.+...+++.|++++++|.|||+++|++ ++
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 3457999999999999999996 799999999999999999999999999998899999999995 56
Q ss_pred HHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 258 i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
+ +.||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999988764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=261.59 Aligned_cols=204 Identities=23% Similarity=0.253 Sum_probs=146.2
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-----------------------------------~~~~ 113 (557)
..+++++|+++++| +++|+|||||||||||++|.++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999997766420 0126
Q ss_pred eEEEECCEeCCC------CcccEEEEccCCCCCCCCCHHHHHHHHhhccC-----------------------CCCCC--
Q 008669 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----------------------PDKMP-- 162 (557)
Q Consensus 114 G~I~~~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~~-- 162 (557)
|++.+||++... ....+++++|++.++.. +..+...|.-.... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999987542 11338999999876543 55555544321100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 008669 163 --------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (557)
Q Consensus 163 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 189 (557)
.......+.+.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000123344556666654310 00 1110
Q ss_pred ----cccCC-CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 008669 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 190 ----~~~~~-LSgGerqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
...+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999997 689999999996 456889
Q ss_pred CeEEEe----eCCeEEEEc
Q 008669 263 DRLYLL----SGGKTVYFG 277 (557)
Q Consensus 263 D~v~~L----~~G~iv~~G 277 (557)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-32 Score=290.89 Aligned_cols=186 Identities=11% Similarity=0.087 Sum_probs=147.9
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCcccEEEEccCCC---CCCCCCHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVR 146 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G-~-I~~~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~ 146 (557)
+.++|+++++|++++|+||||||||||+|+|+|+..|+ +| + |.+||.. ++.++|+||+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchh
Confidence 34789999999999999999999999999999999875 89 9 9999832 356899999974 45567999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE 220 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a--L~~~p~l----lllDE 220 (557)
||+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321110 0 0123455677788876554 34799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch-----HHHhcCCe-----EEEee-CCeEEEEcCcchH
Q 008669 221 -PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA 282 (557)
Q Consensus 221 -PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-----~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 282 (557)
||++||+. ...+.+++++ .|.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555444 37899999999641 56689999 99999 99999 8988665
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=234.58 Aligned_cols=83 Identities=34% Similarity=0.479 Sum_probs=76.7
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008669 191 HLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++ + ....+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCCE
Confidence 56689999999999999999 79999999999999999999999999999988899999999995 3 4788999
Q ss_pred EEEeeCCeEEE
Q 008669 265 LYLLSGGKTVY 275 (557)
Q Consensus 265 v~~L~~G~iv~ 275 (557)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-29 Score=242.02 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=100.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--eCCCCcccEEEEccCCCCCCCCCH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--KTKLSFGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~--~~~~~~~~~~yv~Q~~~l~~~lTV 145 (557)
.+.+|+|+ ++||+++|+||||||||||+++|+|+ +|+ +|+|..... +.....+.++|+||++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46799996 89999999999999999999999999 875 788742111 1112235699999975
Q ss_pred HHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008669 146 RETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 146 ~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
+||+ .+.. .+.. ... .++++++++. + + |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4454 2211 1110 000 1234445443 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
||+| ++..+.+.|+++ ++|+||| +||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 9999 899999999998 6789999 99996
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-25 Score=228.41 Aligned_cols=88 Identities=28% Similarity=0.258 Sum_probs=73.8
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE-
Q 008669 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v- 265 (557)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.|+|++||++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34679999999999999997 5889999999999999999999999999984 589999999995 467899987
Q ss_pred -EEeeCCeE-EEEcCcch
Q 008669 266 -YLLSGGKT-VYFGETSA 281 (557)
Q Consensus 266 -~~L~~G~i-v~~G~~~~ 281 (557)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77887754 44444444
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-29 Score=257.03 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=146.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008669 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|..|+.++++.++.... +..+ |.+ ....|+++||++.| . +.+|+|+|+++++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~----~~~~-----~~~---------~~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT----GEGS-----WKS---------ILTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC----SSCC-----THH---------HHHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC----CCCc-----ccc---------cCCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 577899999999986543211 0000 110 01126677888776 2 5699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH-HHHHHhhccCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~ 160 (557)
|++++|+||||||||||+++|+|++ +|+| ++|++|++.++.. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999987 4777 3467888888775 8887 7765311
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
.+. .+.+.++.+ |.+..| +..|||||||| ||||+.+|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 344555554 555444 24799999999 999999999999 99999999988862
Q ss_pred HhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHh
Q 008669 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (557)
Q Consensus 241 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (557)
.+|++. ..+.+|+| +|++|++++.|+.+++...|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 178853 46789999 9999999999999888555544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-26 Score=212.77 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=101.2
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCC-CCCCCHHHHHHHH
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL-IGTLTVRETISYS 152 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l-~~~lTV~e~l~~~ 152 (557)
||||++++||+++|+||||||||||+|++.+- ...+++. ...++++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~---------~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP---------TEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG---------GGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC---------CeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 68999999999999999999999999996421 1111111 112566676421 00001122111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 008669 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~---- 228 (557)
.... .....|.....+. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~-~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVS-KRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHH-HHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHH-HHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 1223354433332 2246999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 008669 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (557)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 259 (557)
....+.+.|++++++|.|+|++||++ +++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 55889999999887799999999995 4443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-27 Score=252.02 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=137.2
Q ss_pred ccceeceeEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999886 899999997642 1
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH--HHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~ia 206 (557)
.+|++|++ .++.+|+.||+.++.. +.+++++++.+++.+. +.. +. +||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5778899998755421 1236788899998764 222 22 8999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCch-HHHhcCCeEE
Q 008669 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRLY 266 (557)
Q Consensus 207 ~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~~~H~~~~-~i~~~~D~v~ 266 (557)
++|+. +|+++++||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999984 332 678899998542 2666666653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-24 Score=204.43 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=102.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
.++|+||||||||||+++|+|.+.. ...|... .+.. ...+.++|++|+. ++.+++ + +.+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 5899999999999999999998742 1233221 1111 2235689999975 222332 1 0000 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHH
Q 008669 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVT 234 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a-----L~~~p~llllDE--PtsgLD~~~~~~i~ 234 (557)
.-.+..+. ++..||||||||++||++ ++.+|++++||| ||++||+.....+.
T Consensus 65 ----------------~~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 ----------------TSKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp ----------------CCSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred ----------------Cccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 00012222 455799999999999996 999999999999 99999999999999
Q ss_pred HHHHHHHhCCCEEEEEeC--CCchHHHhcCCeEEEeeCCeEEE
Q 008669 235 QTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4678999996 335778888887 5566654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-27 Score=225.30 Aligned_cols=180 Identities=16% Similarity=0.105 Sum_probs=119.9
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCcccEEEEccCCCCCCCCCHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
.+.+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...+.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 3567888 69999999999999999999999999999852 2333323232211 1235689999998888888888
Q ss_pred HHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEE
Q 008669 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (557)
Q Consensus 147 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~lll 217 (557)
+++........ ....+..+.++++++. ++.+|+.+..+.. ++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 77642211100 0012334444555554 4445554444432 34566 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 218 lDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++|++ +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 78999999999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-24 Score=218.56 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=133.0
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cccEEEEccCCC-C
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-L 139 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~yv~Q~~~-l 139 (557)
++++|+++++|++++|+||||||||||++.|+|+++|. +|+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999998875 89999999874211 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEE
Q 008669 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--lll 217 (557)
+|.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 88899999998864211 00 12455677776655544 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc--------hHHHhcCCeEEEeeCCeE
Q 008669 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 218 lDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 273 (557)
|| ||+|||+.++ ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999999865 345553 5899999999421 234456678888888864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-23 Score=215.42 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=133.4
Q ss_pred eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cccEEEEccCCC-CC
Q 008669 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-LI 140 (557)
Q Consensus 73 ~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~yv~Q~~~-l~ 140 (557)
+++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998875 89999999874221 135899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEE
Q 008669 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llll 218 (557)
|.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 8899999999864311 00 12455677776655544 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC--------chHHHhcCCeEEEeeCCeE
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~--------~~~i~~~~D~v~~L~~G~i 273 (557)
| ||+|||+.++. +++.+ .|.|+|++||.. .+.+....+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999998653 44543 589999999942 1234456677888877753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-23 Score=211.85 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=95.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
.++|+||||||||||+|+|+|...|+ +|+|.++|.+... ..+.++|++|++.+++.+||.||+.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--H
Confidence 48999999999999999999999886 8999999986532 236799999999999999999999987543311 1
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008669 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~ 241 (557)
.. +.+.+.++ .+..+.. +..||||||||+++||+++. ++++|||++|||+.. .+.++.+.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 12333332 2223332 34699999999999999875 999999999999987 55666666
Q ss_pred hCCCEEEEEeCCC
Q 008669 242 RDGRTVIASIHQP 254 (557)
Q Consensus 242 ~~g~tvi~~~H~~ 254 (557)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 65 8999999873
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=199.93 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=76.9
Q ss_pred CcccC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 008669 189 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 189 ~~~~~-~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 258 (557)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 33455 69999999999999999 8999999999999999999999999998873 799999994 3 2
Q ss_pred HhcCCeEEEeeCCeEEEEcCcchH
Q 008669 259 FELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-24 Score=232.24 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=149.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~~~~-- 125 (557)
.++++|+++.+. .+..+|+++ +.+.+||+++|+||||||||||+++|+|+.+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 477888887762 246799999 999999999999999999999999999999886 899999998 3211
Q ss_pred --------CcccEEEEccC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008669 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 --------~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (557)
..+.++|++|+ +.+++.+||.+|+.+.+....... + ......| ....+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~---------~v~~~ld------~l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------Q---------HVLLIMD------SLTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------C---------EEEEEEE------CHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------C---------CHHHHHH------hHHHHH
Confidence 13568999995 566778899999988654320000 0 0011112 134699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCchHHHhcCCeEEE
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~v~~ 267 (557)
+|| ||++|| +.+|++ |+|||+.+...+.++++++.+ + |. ||++++||.. ..++|++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999866 3 64 9999999975 578999999
Q ss_pred eeCCeEEEEcCcchH
Q 008669 268 LSGGKTVYFGETSAA 282 (557)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (557)
|.+|+++..|++++.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999887654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-23 Score=211.61 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=106.1
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcccEEEEccCCCCCCCCCHHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|.+... ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 799999999999999999999999999999999999886 8999999864110 011222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.++.+.|+.+...+.|+|+++|+++ +.+.+||+++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456778777654458999999964 678899999998875
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=192.28 Aligned_cols=77 Identities=30% Similarity=0.332 Sum_probs=70.0
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008669 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 191 ~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45689999999 67778888889999999999999999999999999999877789999999994 47899999
Q ss_pred EEEee
Q 008669 265 LYLLS 269 (557)
Q Consensus 265 v~~L~ 269 (557)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-25 Score=216.00 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=99.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CcccEEEEccCCCCCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLIGT 142 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------~~~~~~yv~Q~~~l~~~ 142 (557)
+.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ..+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 654211 13468899998766654
Q ss_pred CC-HHHHHHH---HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH-----HHHHHhCC
Q 008669 143 LT-VRETISY---SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRP 213 (557)
Q Consensus 143 lT-V~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----a~aL~~~p 213 (557)
++ +.+++.+ ....+ ..+ ...++++++...+ ..+. ..+|||||||++| +++++.+|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 32 1111111 01110 111 1235566654322 1111 3689999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008669 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (557)
Q Consensus 214 ~llllDEPtsgLD~~~~~~i~~~L~~l~~ 242 (557)
++++|||||+++|..+...+.+.|.++.+
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-21 Score=219.43 Aligned_cols=162 Identities=23% Similarity=0.319 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCH-----HHHHHHHHH
Q 008669 98 LLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW-----SEKRTLVER 172 (557)
Q Consensus 98 Ll~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~-----~~~~~~v~~ 172 (557)
...|..+++.+. .|+|.++|+++.. +..+|+.|++.|...+........ ....+...+
T Consensus 384 C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 344555566664 7899999886421 344688898888654432211100 011123456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 008669 173 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249 (557)
Q Consensus 173 ~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 249 (557)
.|..+||.+. .++. +.+|||||||||.||++|+.+|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888999754 4554 45799999999999999999887 99999999999999999999999999888999999
Q ss_pred EeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 250 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 250 ~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
++|++ +.+ ..+|+|++| ++|++++.|+++++.
T Consensus 522 VtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 522 VEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp ECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99995 444 569999999 899999999998865
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-20 Score=202.92 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.2
Q ss_pred ccCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 008669 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (557)
Q Consensus 191 ~~~~L-SgGerqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 267 (557)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++ . +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 89999999996 3 4567999999
Q ss_pred eeCC
Q 008669 268 LSGG 271 (557)
Q Consensus 268 L~~G 271 (557)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9765
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-21 Score=198.74 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=119.6
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CcccEEEEccCCCCCCCCCH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G-~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 145 (557)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.+... ..+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 56899999999999999999999999999999999998764 56 56543322111 0112222333221 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC-
Q 008669 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~~~p~llllDEPts- 223 (557)
.+++.... + +.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33443221 1 1122333444444322221 111 123588998 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEeCCCc-h--------------------HHHhcCCeEEEeeCCeE
Q 008669 224 --G---LDS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS-S--------------------EVFELFDRLYLLSGGKT 273 (557)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 273 (557)
+ +|. .....+++.|+++++ .|.|||+++|+.. . .+.++||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 677889999999976 4999999999951 3 67889999999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-22 Score=208.64 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=98.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
+++|++++|+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 7999999999999999999999999998773 332 458999999999988 99999864321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
.+.+.....+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222223456777888887 44444433 46999999999999999999999999999999997
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-20 Score=203.95 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=120.1
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008669 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 76 s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|++. .++.++.. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~~---~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNAY---SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHHH---TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHHH---Hc
Confidence 458999999999999999999999999998765 232 12456677641 12333321 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 008669 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (557)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~-----~~ 230 (557)
... +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 112 224555554444 45679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc---------hHHHhcCCeEEEeeCCe
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~~G~ 272 (557)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999889999999999961 45678999999999887
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-21 Score=224.35 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=121.5
Q ss_pred EEEEEe-----EEEEEEccCcccccceeceeEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 008669 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (557)
Q Consensus 51 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~ 118 (557)
.|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||+| |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 489999 887762 246799999999987 999999999999999999999 88643
Q ss_pred CCEeCCCCcccEE-EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 119 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
..++| ||||+.. .+||.|++.. + +|+.+.... ..+.+|+
T Consensus 815 --------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp --------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHH
T ss_pred --------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHH
Confidence 12344 9999753 4566555410 1 122211111 1234677
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv- 274 (557)
++++ +++|++++++|+++||||||+|+|+... ..++..|+.++++ |.++|++||+. +.+...+|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 7665 9999999999999999999999999985 5578999999876 99999999994 6777889999887 58887
Q ss_pred -EEcCcch
Q 008669 275 -YFGETSA 281 (557)
Q Consensus 275 -~~G~~~~ 281 (557)
+.|++++
T Consensus 932 ~~~~~~~~ 939 (1022)
T 2o8b_B 932 MVENECED 939 (1022)
T ss_dssp C-------
T ss_pred EEecCccc
Confidence 4565443
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-21 Score=193.91 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=108.0
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHH
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 222233 1235689999985 77789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 226 (557)
|++.+....... ..+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 999876432211 001111123344455443 2333433 35699999999988 57888999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.. +.++ .+.+|++++|+.......+++++ ++|+ +.+++..
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 63 2222 37899999997332223334433 5564 4455543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-19 Score=202.63 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHhhccCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 008669 141 GTLTVRETISYSARLRLPDK---MP---WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 213 (557)
..+||.|++.|...+.++.. +. .++..+++ +.|+.+||... .|+.+ .+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 45899999999776643210 00 02344555 45889999864 56654 469999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 214 --~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999995 44 5679999999 799999999998764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-21 Score=199.99 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=138.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++.+++++.+. .+..+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHH
Confidence 3477888888873 246799999 999999999999999999999999999999886 8999999864110
Q ss_pred --------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008669 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 --------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
..+.+.+++|.+. +..+.+...... ....+.....+ .+... .+ ..+..+|+
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~~~~lS~ 174 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DSVTRYAR 174 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ETHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hhHHHHHH
Confidence 1134677777532 233332211100 00111111111 11100 00 13456999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||++++|.+
T Consensus 175 g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d 241 (347)
T 2obl_A 175 AA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD 241 (347)
T ss_dssp HH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS
T ss_pred HH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC
Confidence 99 899999 688887 999999999999999999874 477 9999999975 567999999999
Q ss_pred CeEEEEcCcchH
Q 008669 271 GKTVYFGETSAA 282 (557)
Q Consensus 271 G~iv~~G~~~~~ 282 (557)
|+++.+|+.++.
T Consensus 242 G~Ivl~~~l~~~ 253 (347)
T 2obl_A 242 GHIVLTRELAEE 253 (347)
T ss_dssp EEEEBCHHHHTT
T ss_pred cEEEEeCCHHHc
Confidence 999999877654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=208.91 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=119.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEe
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--------SSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L--------~g~~~~~~~~~G~I~~~G~~ 122 (557)
.+.+++...-+-....+.+.+++|+++.+++|++++|+||||||||||||++ .|...|. ++.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~------- 700 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESA------- 700 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEE-------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---ccc-------
Confidence 3566654432211111245799999999999999999999999999999999 4433221 110
Q ss_pred CCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 123 ~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.+ +.+ +..+|+.+. ..+++|+|++++
T Consensus 701 ------~~~~~---d~i----------------------------------~~~ig~~d~--------l~~~lStf~~e~ 729 (934)
T 3thx_A 701 ------EVSIV---DCI----------------------------------LARVGAGDS--------QLKGVSTFMAEM 729 (934)
T ss_dssp ------EEECC---SEE----------------------------------EEECC-----------------CHHHHHH
T ss_pred ------cchHH---HHH----------------------------------HHhcCchhh--------HHHhHhhhHHHH
Confidence 01100 001 111222111 113588888888
Q ss_pred HHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 203 VSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 203 v~ia~aL--~~~p~llllDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
..+|+++ +++|+++||||||+|||+.....+ +.+++.+++ .|.|+|++||+. ++..++|++..+++|++...++
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEec
Confidence 8888888 899999999999999999999888 677788876 599999999993 5678999999999999998887
Q ss_pred cchHH
Q 008669 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
.+++.
T Consensus 808 ~~~l~ 812 (934)
T 3thx_A 808 EETLT 812 (934)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=205.71 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=127.0
Q ss_pred CCCCcHHHHHHHHHcCCCCCC------CceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC----
Q 008669 90 PSGSGKSTLLDALSSRLASNA------FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD---- 159 (557)
Q Consensus 90 ~sGaGKSTLl~~L~g~~~~~~------~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~---- 159 (557)
.+..||++|.+.+....-|.. ..+|+|.++|+++... ..+++.|.+.|........
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~--------------~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL--------------SRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH--------------HHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH--------------hhcCHHHHHHHHHhhhhhhhhcc
Confidence 356799999998876433321 1367888888754210 1134444444443321000
Q ss_pred ----CC--C--------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCC
Q 008669 160 ----KM--P--------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPT 222 (557)
Q Consensus 160 ----~~--~--------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p--~llllDEPt 222 (557)
.. . ..+..++++ .+..+||.+. .++.+ ..|||||||||.||++|..+| ++|+|||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 00 0 123455665 6889999864 56644 579999999999999999999 599999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008669 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
+|||+.....+++.|++|++.|.|||+++|++ + +.+.+|+|++| ++|++++.|+++++.
T Consensus 410 ~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 410 AGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999999999999988899999999995 4 56789999999 799999999988764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-20 Score=206.72 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=117.8
Q ss_pred ccccceeceeE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CcccEEEEccCCCC
Q 008669 67 ETHNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNL 139 (557)
Q Consensus 67 ~~~~iL~~vs~-~i~~Ge~~~ilG~sGaGKSTLl~~--L~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l 139 (557)
.+..+|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|++... ..+.+||++|++..
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhc
Confidence 34679999999 999999999999999999999999 78998875 8999999976321 12457899997542
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEe
Q 008669 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllD 219 (557)
.+. +.+ ..... .. ...++++.++|.+..+.. ++.|||| +|+++++|
T Consensus 100 ~~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilD 145 (525)
T 1tf7_A 100 EGK------LFI---LDASP--DP-----EGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSID 145 (525)
T ss_dssp TTS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEE
T ss_pred cCc------EEE---EecCc--cc-----chhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEEC
Confidence 211 100 00000 00 001111222222222221 2235554 58899999
Q ss_pred CCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH--------HHhcCCeEEEeeCC
Q 008669 220 EPTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSGG 271 (557)
Q Consensus 220 EPts-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G 271 (557)
|||+ +||+..+..+.++++++++.|.|||+++|++... +..+||+|++|++|
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 9998 5699999999999999988899999999997432 34569999999984
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-19 Score=160.43 Aligned_cols=82 Identities=29% Similarity=0.323 Sum_probs=73.5
Q ss_pred cccCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 008669 190 WHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 190 ~~~~~LSgGerqRv~ia------~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 263 (557)
..+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 35678999999999876 899999999999999999999999999999999977789999999995 4678999
Q ss_pred eEEEee--CCeE
Q 008669 264 RLYLLS--GGKT 273 (557)
Q Consensus 264 ~v~~L~--~G~i 273 (557)
++++|+ +|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 999994 5643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-20 Score=180.08 Aligned_cols=154 Identities=20% Similarity=0.158 Sum_probs=96.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHH
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (557)
+-+++|++++|+||||||||||+++|+|...+.. ...|.+++++.+.. ..+.+++++|+..+++. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 4799999999999999999999999999554310 01346666654310 11223344443333322 333332111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHHh-------CCCEEEEeCCCCC
Q 008669 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~~-------~p~llllDEPtsg 224 (557)
...++++ ++++..+++++. +|+++++||||++
T Consensus 98 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 98 ----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1123333 333555566655 9999999999999
Q ss_pred CCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCc---hHHHhcCCeEEEeeCCe
Q 008669 225 LDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (557)
Q Consensus 225 LD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~---~~i~~~~D~v~~L~~G~ 272 (557)
+|+.. ..++++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99842 2378888888765 5999999999532 23778899999998753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-19 Score=180.35 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=99.3
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998762 1799999887542 333321100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.. . ..+|++. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0123321 122 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
...++ +. +..|.+|++++|+.. +...+||++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 65543 33 357999999999963 6788999988864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=197.14 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=104.1
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
++.|++|||+++++|++++|+||||||||||||++++..-.. ..|. ..... -+.++.-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa~---~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPAE---EATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSSS---EEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccch---hhhhhHHHHHHHhCChHH
Confidence 467999999999999999999999999999999998643110 0110 00000 011111112222222211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
++ .. ..+.+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEE-eeCCeEEE
Q 008669 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVY 275 (557)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 275 (557)
.....+. .+++.+++ .|.|+|++||++ ++.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 9999997 77888865 699999999995 45566665421 33444433
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-21 Score=183.49 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=113.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCC--CCCCHHHHHHHHhhcc
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~~~~~ 156 (557)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 478999999999999999999999997642 478999998776 56899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH----HHHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~ia~aL~~~p~llllDEPtsg-------L 225 (557)
.+ .....+++.+.++.+++.+..+.+ +..+|+|| +||++++++++.+|+++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 111234566777888877655543 34689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEeCCC
Q 008669 226 DSAAAFFVTQTLRCL-SRDGRTVIASIHQP 254 (557)
Q Consensus 226 D~~~~~~i~~~L~~l-~~~g~tvi~~~H~~ 254 (557)
|+.....+.+.+++. .+.|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999875 45789999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-19 Score=199.92 Aligned_cols=146 Identities=22% Similarity=0.168 Sum_probs=106.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
++.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--hhccceeeHHH---hhccCCHH
Confidence 36799999998 99999999999999999999999863 32 45432 1 12245677766 45556666
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDEP--- 221 (557)
||+. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5542 13789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 222 tsgLD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|++||..+. ..+++.|++ .|.|+|++||+. +..+++ .-.+.++++....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 999999875 578887766 489999999994 445555 2223445554443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-19 Score=184.91 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=86.3
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CcccEE
Q 008669 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~-~~~~~~~~G~I~~~G~~~~~--~~~~~~ 131 (557)
.||++.+ +++.++++++++| +|+||||||||||++.|.|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3666666 4577999999998 99999999999999999997 6554 78 8888865321 134578
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008669 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.....+|+.|+..++..... .+..+..++.+. +..+. +.+++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 99999888888999999887543210 000011111111 11233 34579999999999988875
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCc
Q 008669 212 RPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (557)
Q Consensus 212 ~p~llllDEPts-gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 255 (557)
++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 5999873 566666553 788999999953
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-19 Score=180.09 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=108.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cccEEEEccCCCCCCCCCHHHHH
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... +..++|++|++.++|.++++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999885 89999999874311 13589999999888989999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.++..... . ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~-d-----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY-D-----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC-S-----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC-C-----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 87532110 0 002222333322221 2455669999999999999995555 566666
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCC
Q 008669 230 AFFVTQTLRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 230 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 254 (557)
...+++.++++.+ .|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6677777888765 489999999984
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-18 Score=198.13 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=110.2
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
++.+++|+|++ ++|++++|+||||||||||||+|+|..... ..| .........+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 45799999999 999999999999999999999999974221 022 111111133555554 455556665
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
++..+ + +.+|+++++ ++.+...+++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 54221 0 125666654 4555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
.....+ +..++.+++ .|.++|++||++ +...++|++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 888776 788888887 499999999995 35678998878888888765443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-19 Score=185.27 Aligned_cols=167 Identities=21% Similarity=0.183 Sum_probs=104.4
Q ss_pred cceece-eEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCcccEEEEccCCCCCCCCC
Q 008669 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~-~~~G~-I~~~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (557)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|. |++++++.. ..+++++++|+..+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 6899999999999999999999999999987 4320 01267 888876431 12345666666544433 4
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-------hCCCEEE
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLF 217 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-------~~p~lll 217 (557)
+.||+.+... . -|.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 4444322100 0 1355666666666666 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 218 LDEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 218 lDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
+||||+++|+.. ..++++.|+++++ .|.|||+++|.. ......++.......|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 999999999862 3566777777765 589999999985 34444455566666777665544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-20 Score=203.44 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=116.1
Q ss_pred EEEEEeEEEEEEccCcccccceece----------eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
.++++|++..+.. ..+.+|+.+ ++.++. ++|+|||||||||||++|+|+..|. .+|.|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4778888887732 112344333 355554 9999999999999999999998772 289999999
Q ss_pred EeCC--------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008669 121 HKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (557)
Q Consensus 121 ~~~~--------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (557)
.++. ..++.++|++|+..+++.+||+||+.++........ .++..
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s~----------- 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGISH----------- 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCCS-----------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccch-----------
Confidence 8631 123568999999999999999999987643210000 01110
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCCch---H---H
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---V 258 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~~~~---~---i 258 (557)
+++.++.+...+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+... + +
T Consensus 135 --------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 135 --------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp --------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred --------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 111122222348999999999 999999999999999999754 36788899998531 1 1
Q ss_pred Hhc-----CCeEEEeeCCeEEEEcCcchHHH
Q 008669 259 FEL-----FDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 259 ~~~-----~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+. ...|+++.++..+..|+.+++.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 111 24588899988887777655443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-17 Score=162.53 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=108.8
Q ss_pred ccceeceeE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 69 HNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 69 ~~iL~~vs~-~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
...|+++.+ .+++|++++|+||||||||||++.|++...+. .|.+.+.+.+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~--------------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE--------------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS--------------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc--------------------CHHH
Confidence 457888885 89999999999999999999999999876542 45554433211 1111
Q ss_pred HHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCC
Q 008669 148 TISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSG 224 (557)
Q Consensus 148 ~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsg 224 (557)
............. .... ....++.....++ ... .....|.++.++...+.....+|+ ++++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEK-KLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTT-TEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhC-CEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 1110001100000 0000 0000000000000 000 112359999998888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc-------hHHHhcCCeEEEeeCC
Q 008669 225 L--DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (557)
Q Consensus 225 L--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G 271 (557)
+ |+....++++.|+++++ .|.|||+++|+.. ..+.++||++++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999865 6999999999962 3478899999999864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-19 Score=172.08 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=103.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
|++++|+||||||||||+++|+|+++ + +| |.++|.+.. ...+.+||++|+. ... ++++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999987 5 78 988886542 2346789999974 111 1111 1111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHH
Q 008669 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~ia~---aL~~~p~llllDE--PtsgLD~~~~~ 231 (557)
++..+ ..+..+|. +...+|+|||+++ ++++ |+..+|+++|+|| |+..+|.....
T Consensus 66 ------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp ------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred ------------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 01110 11224443 3456999999988 4444 5789999999999 89999987554
Q ss_pred HHHHHHHHHHhCCCEEEE----EeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 232 FVTQTLRCLSRDGRTVIA----SIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+ +++.+...++|+ ++|+.. ..+.|+|..+.+|+++.-.
T Consensus 127 ~l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AV----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HH----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 44 444444455554 238742 3567888888888887643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=159.14 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=105.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (557)
.+++|++++|+||||||||||++.+++... .|.++ .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 478999999999999999999999998653 35553 3443221 2457888776532 01222221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HH
Q 008669 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (557)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts--gLD~~~~---~~ 232 (557)
.... ...+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .+
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 234567788888766554 3457999998875 68889999999999999 9998554 88
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC
Q 008669 233 VTQTLRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 233 i~~~L~~l~~-~g~tvi~~~H~~ 254 (557)
+++.|+++++ .|.|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8889998864 699999999995
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-17 Score=170.37 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=88.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc--------------
Confidence 67889999999999999999999999998763 146665443332211 1122344443221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
++-.+ +||++|..+|+++++|||| |..+ .+.
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 11111 9999999999999999999 6555 444
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008669 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 237 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.+++..|+||++++|+.+ .+ +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 4455678999999999964 44 889999998654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-18 Score=161.70 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=98.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~-----~~~~~~~G~I~~~G~~~~~~ 126 (557)
|+++|+++.|. ..+|++ +.+++|..++|+|+||||||||+|.|+|.. .| ..|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-ec
Confidence 78899999883 357888 889999999999999999999999999987 44 356554322100 00
Q ss_pred cccEEEEccCCCCC----CCCC---HHHHHHHHhhc-c----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 008669 127 FGTAAYVTQDDNLI----GTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~----~~lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 188 (557)
...- +.+.+.+. +.-. .+..+...... + .....+ .....+.++++..++.... ++
T Consensus 72 -~~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~---v~ 144 (210)
T 1pui_A 72 -DGKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLV---LL 144 (210)
T ss_dssp -TTEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEE---EE
T ss_pred -CCEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEE---EE
Confidence 0011 11111110 0000 11122211110 0 001111 1223455566666765321 12
Q ss_pred CcccCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 008669 189 NWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (557)
Q Consensus 189 ~~~~~~LSgGerqR-v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~t 246 (557)
+ +...+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++..+|.|
T Consensus 145 n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 T-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp E-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred e-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2 234589999999 89999999999999999999999999999999999998766544
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-18 Score=179.68 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=97.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++||++.| +++.+++|+||+| +|+|+||||||||+|+|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 48888998876 3577999999998 99999999999999999998764311 2222222211 1112457
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++|||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 89999988888899999988764321 0010111112221 135677888999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 008669 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (557)
Q Consensus 211 ~~p~---llllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (557)
.+|+ ++++|||| +|||+... ++++.+.. +.++|+++|.
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 9999 99999999 69998873 44555543 6788888876
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-17 Score=159.71 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=99.0
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccEEEEccCCCCCCCCCH----HHHHH
Q 008669 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RETIS 150 (557)
Q Consensus 76 s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~e~l~ 150 (557)
.-..++|++++|+||||||||||+++|+|..+|+ ..+|+|.+++.+... ..+.++|++|++..|+.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999998752 258999998876432 23458899997655544433 12211
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
+. |+. .+.| +++ +..++..++++||| ||+.++
T Consensus 89 ~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 10 100 0111 121 34556668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHH
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (557)
.++.+.+. ++.||++++|++ +++.+ |+ +.+| .++++++...+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99999876 589999999995 44444 43 6677 56666665443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-19 Score=165.78 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=113.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
|++++|+||||||||||+++|++ +. +|.+.++|.+.... ...++++|.....+.+++++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLL--- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHh---
Confidence 78999999999999999999997 22 68999998754221 2346777765444556788887765332100
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 008669 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~ia~------aL~~~p~llllDEPtsgLD~~~~ 230 (557)
-+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 72 ---------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 72 ---------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0100011110000 011234 888888888888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
.. ++.++.+.+.+.++|.++|. + +++.++||+|+ ++|+++..|+++-+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888886667899999998 5 56889999998 99999999987643
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-15 Score=138.24 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008669 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+. .....+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 346799999999999999974 4699999999999999999999999999865 46899999994 5678999998
Q ss_pred Eee--CCe
Q 008669 267 LLS--GGK 272 (557)
Q Consensus 267 ~L~--~G~ 272 (557)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 564
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-15 Score=140.82 Aligned_cols=155 Identities=20% Similarity=0.160 Sum_probs=100.7
Q ss_pred ccceecee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 69 HNVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 69 ~~iL~~vs-~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
...|+++. +-+++|++++|+||||||||||++.|++ .. .+. +.|+..+..+ +..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~--------------v~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKK--------------VAYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSE--------------EEEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCc--------------EEEEECCCCC----CHHH
Confidence 34577776 4799999999999999999999999998 22 122 2333333211 2211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSG 224 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~ia~aL~~~-p~llllDEPtsg 224 (557)
-....... .... +++++.+. + ...|+++ ++++..+++++.+ |+++++||||+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111110 1111 11222221 1 1245553 6788888999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHh-CCCEEEEEeCCCch------------HHHhcCCeEEEeeCC
Q 008669 225 LDSAA--------AFFVTQTLRCLSR-DGRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (557)
Q Consensus 225 LD~~~--------~~~i~~~L~~l~~-~g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G 271 (557)
+|+.. ...+++.|+++++ .|.|||+++|.... .+...+|.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 2456666888766 48999999998531 567899999999854
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-17 Score=156.14 Aligned_cols=151 Identities=14% Similarity=0.051 Sum_probs=94.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcccEEEEccCCCCCCCCCHHHHHHHHhh
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (557)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 33 799999987531 11233577777644 45689999876543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008669 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
........ ..++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 00000000111111110 0 1123459999999999999999999876 6888877777
Q ss_pred HHHHHHHhCCCEEEEEe
Q 008669 235 QTLRCLSRDGRTVIASI 251 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~ 251 (557)
+.++.+...+..+|.++
T Consensus 142 ~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVS 158 (191)
T ss_dssp HHTTCCGGGGGGEEECT
T ss_pred HHHhccCcccccEEECC
Confidence 77766543233344333
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-18 Score=180.23 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=102.1
Q ss_pred ceeceeEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEeCCCCcccEEEEccCCCCCCCCC
Q 008669 71 VLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 71 iL~~vs~~i~~--Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~----G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (557)
+.+.|++.+.+ |+.++|+||||||||||+++|+|++++. + |+|.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 56789999999 9999999999999999999999999875 6 6666532100 0000011112
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHHHHHHHHHHH-hCCCEEEEeC-
Q 008669 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE- 220 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-~~p~llllDE- 220 (557)
. +++.+.... .........+.+ +..+..++ .+..+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 233332110 000000000000 00011111 12246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 221 --PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 221 --Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|+ .++|+..+..+.+.|+++.+ .|.++++++|. .+..+++|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Confidence 65 58999999999999998755 48899999975 35567777766664
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-16 Score=166.91 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=116.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
.++.++ ++.| ++.. |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........+
T Consensus 16 ~l~~~~-~~~y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGF-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEE
T ss_pred eEEEee-EEEE-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEe
Confidence 345555 5555 2345 9999999999999 99999999999999999999842 232111 101111124
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CcccC
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLR 193 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~ 193 (557)
.++|++|++.+++.+||.||+.++.... ...... ......++.+... ++.. ..|+. +. ....+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 6899999998888899999987653210 000001 1233455556654 4431 12222 11 01123
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 008669 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 253 (557)
+++-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 566666 7899999999999999999999999999999999986 77789999888764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-15 Score=155.95 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=96.3
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccEEEEccCCCCCCCCCHHHHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+... ..+.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566766 7899999999999999999999999998762 16999877765432 124567777741
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+|++. ..+ +.+|+++|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008669 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
... .++. +..|.+|+.++|+. ++.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 433 3443 35689999999995 3678888887764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-15 Score=156.20 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=100.6
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CcccEEEEc-cCCCCCCCCCHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVR 146 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 146 (557)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|... .. ..+.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 349999999999999999999999999999999999886 89999998531 11 235678888 54321
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 008669 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 226 (557)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 -----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~--- 263 (361)
T 2gza_A 234 -----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG--- 263 (361)
T ss_dssp ----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS---
T ss_pred -----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---
Confidence 012223456667777777899999999986
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ----~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ----GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777554567899999953 678899999888763
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-16 Score=147.33 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=66.0
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
++.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.+.........|++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467999999999999999999999999999999999998 75 8999999976421111012899998888 899999
Q ss_pred HHHH
Q 008669 148 TISY 151 (557)
Q Consensus 148 ~l~~ 151 (557)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-16 Score=157.17 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=100.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~---g~~~~~~~~~G~I~~~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+.... ...+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 988774 78888877542211 123455678877888889999998753210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCcccCCCCHHHHHHHHHHHHH-HhCCCEEEEe--
Q 008669 157 L-----PDKMPWSEKRTLVERTIIEMGLQ--DCA-------DTVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD-- 219 (557)
Q Consensus 157 ~-----~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRv~ia~aL-~~~p~llllD-- 219 (557)
. -...+... ..++.+....... -.. -..+.+..+..||| |+ +++ +.+|+++++|
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 00111111 1122221111111 000 01111224456998 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhCC
Q 008669 220 --EPTSGLDSAAAFFVTQTLRCLSRDG 244 (557)
Q Consensus 220 --EPtsgLD~~~~~~i~~~L~~l~~~g 244 (557)
|||++||..+...+.+.|+++.+++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-16 Score=146.12 Aligned_cols=137 Identities=17% Similarity=0.206 Sum_probs=89.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-------Cc-ccEE----EEccCCCCCCCCCHHHHH
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-------SF-GTAA----YVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~-------~~-~~~~----yv~Q~~~l~~~lTV~e~l 149 (557)
++++|+|+||||||||+++|+|++++.....|.|.+||.+.. . .+ +.++ +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998774333799999997621 1 11 2355 888887655 110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCC
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ll-------llDEP 221 (557)
. . .+....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111234556655 43 47898886 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 008669 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (557)
Q Consensus 222 tsg---LD~~~~~~i~~~L~~l~~~g 244 (557)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34556678888886666655
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-14 Score=138.12 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=86.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHH
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g--~~~~~--~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (557)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.. .+ ...+-....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5689999999999999999999999999 44431 0014555555432 11 111111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH-
Q 008669 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTSGLDSA- 228 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~ia~aL~--~~p~llllDEPtsgLD~~- 228 (557)
..+. ... +++++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g----~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 80 ERYG----LSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp HHTT----CCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred HHcC----CCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 1111 111 11222111 111245555432 33334444 589999999999999985
Q ss_pred ------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCchHH-------------------HhcCCeEEEeeCC
Q 008669 229 ------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSEV-------------------FELFDRLYLLSGG 271 (557)
Q Consensus 229 ------~-----~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i-------------------~~~~D~v~~L~~G 271 (557)
. ...+++.|+++++ .|.|||+++|... +. ..++|.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456666777665 4999999999642 22 2279999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-18 Score=172.78 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=100.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCC--------------------cccEEEE-
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~--------~~~~~~~G~I~~~G~~~~~~--------------------~~~~~yv- 133 (557)
++++|+|+||||||||||.|.|.. .++ .|+|.+||.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 443 89999999864321 1224555
Q ss_pred --ccCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 134 --TQDDNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 134 --~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
+|+..+++..++.||..++......... +......+++.++..+++.+..+.. .++|+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 5665555566777766443100000000 0000000111122223333333322 2589999999998888
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 263 (557)
++.+|+++ ||| ..+.+.|+++. .+.||++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 888 77888888875 5899999999864 3444443
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-14 Score=148.24 Aligned_cols=121 Identities=19% Similarity=0.112 Sum_probs=87.9
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCcccEEEEccCCCCCCCCCHHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~~~~~~G~I~~~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....+++++|+..+++..+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 46666664 4799999999999999999999999988 75 8999987 75432 22356899999998998889988
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
+ . + ...+.++..+.+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 1 1 13455566677888899999987777643 5699 999999999764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=142.02 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=67.5
Q ss_pred ccCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 008669 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 191 ~~~~LSgGerqRv------~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 263 (557)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. ++.+||++||++ ++...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChH--HHHhhCC
Confidence 4567999999988 567889999 99999999999999999999999999874 357999999996 3678999
Q ss_pred eEEEee
Q 008669 264 RLYLLS 269 (557)
Q Consensus 264 ~v~~L~ 269 (557)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-14 Score=148.11 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhh---cc
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR---LR 156 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---~~ 156 (557)
+++.+++|.|+||||||||.+.|.+.+.+ .| . ..+.+.+|+||+.+++. ++++|+.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46889999999999999999999998864 23 0 12345666999998876 89999988631 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~--~--~~~~~vg~~~~~~LSgGerqRv~ia--~aL~~~p~llllDEPtsgLD~~~ 229 (557)
...+.+.........+.++.+.-. . .....+. .+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000111111123455566665432 0 0111122 14467999999999987 555 999999999999999864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-14 Score=147.76 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=98.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------c--ccEEEEccCCCCCCCCCHHHH
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------F--GTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . ..+.|++|+..++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999875 89999999875321 1 135699999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
+.++...... . .+++..|+.+..+.. .++.-.+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d-~-----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID-V-----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS-E-----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch-h-----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 9876421100 0 011222332221111 1222348888887777778875443
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 008669 229 AAFFVTQTLRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvi~~~H~~ 254 (557)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 456666777764 589999999963
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-14 Score=153.61 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=104.2
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CcccEEEEccCCCCC
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----------~~~~~~yv~Q~~~l~ 140 (557)
-+++|+++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998775 7999998765321 124589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-hCCC-EEEE
Q 008669 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPR-LLFL 218 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-~~p~-llll 218 (557)
+.+||++|+.++...... .+ +++..|+.+... .+-.--+|++.+++++. ..|. +||.
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 888999999887432100 00 112222221111 11122357888888764 4574 5555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 008669 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (557)
.+||+|.|.. +.++.+.+ -|.|.+++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 34455543 58899999994
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-15 Score=157.77 Aligned_cols=172 Identities=18% Similarity=0.141 Sum_probs=112.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++.+|+++.+ ..+.+|+++|+++++|++++|+||||||||||+|+|+|.+.|. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 3444555444 2357999999999999999999999999999999999998775 8999999976421
Q ss_pred ---CcccEEEEccCCCCCCCC------------CHHHHHHHHh-----------------------------hccCCCCC
Q 008669 126 ---SFGTAAYVTQDDNLIGTL------------TVRETISYSA-----------------------------RLRLPDKM 161 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~l------------TV~e~l~~~~-----------------------------~~~~~~~~ 161 (557)
.+.+++|++|++.+++.. +++|.+.... .+..+.
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--
Confidence 134589999998776532 1233321100 000000
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHH
Q 008669 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (557)
Q Consensus 162 ~~~~~~---~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~ 232 (557)
...+.+ +.+.+....+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 112210 123579999999999999987 688877 99999999999
Q ss_pred HHHHHHHHHh
Q 008669 233 VTQTLRCLSR 242 (557)
Q Consensus 233 i~~~L~~l~~ 242 (557)
+++.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-14 Score=132.05 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=42.9
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 008669 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (557)
Q Consensus 210 ~~~p~llllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 257 (557)
+.+|++|++|||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999999887899999999997543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-14 Score=153.89 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=96.5
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 479999999999999999999999999999999742 1222221111123444444320 00111111000
Q ss_pred HhhccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 152 SARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.........+.....+ ++++.++..+++. + .....+|+|++||+.++++|+.+|.++++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~-----~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---D-----EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---S-----CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---c-----CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111000 0111122222332 1 23456999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhcCCeE
Q 008669 230 AFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 230 ~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 7 455555444 4457777766644344555555443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-13 Score=123.97 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=73.0
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 467777 8999999999999999999999998754 34 11234433221100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66666
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCCch
Q 008669 230 AFFVTQTLRCLSRDGRT-VIASIHQPSS 256 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~t-vi~~~H~~~~ 256 (557)
+..+.+++.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 89999999998887888 8999997543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=139.93 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 193 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999876688999999994 567889999999
Q ss_pred e
Q 008669 269 S 269 (557)
Q Consensus 269 ~ 269 (557)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-14 Score=144.12 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=81.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cccEEEEccCCCCC-----CCCCHH
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTVR 146 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~---~G~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV~ 146 (557)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 469999999999999999999999 88775 899999 88764321 12579999998653 78899
Q ss_pred HHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 008669 147 ETI--SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 147 e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
|++ .|.. .++.....+..+...+++++++.++|.+ .++.+ ++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----LKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----HHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 888 4431 0111111122233456889999999986 56654 45699988999999873
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-15 Score=162.29 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=90.8
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cccEEEEc------
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT------ 134 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~------ 134 (557)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.++|.+.... .+.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 467777 4 3899999999999999999999999998875 89999988764311 12344544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 135 ---QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 135 ---Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
|++.. ++. .|+.+++.++..-... ...........+ +.|..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88754 344 5899998876421100 000000111222 346678887542 234699999999
Q ss_pred HHHHHHhCCCEEE
Q 008669 205 IALEILMRPRLLF 217 (557)
Q Consensus 205 ia~aL~~~p~lll 217 (557)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-14 Score=139.27 Aligned_cols=163 Identities=23% Similarity=0.198 Sum_probs=89.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998752 2 134566666544432 222222100000011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008669 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~aL~~~p~llllDEPtsgLD~~~~~~i~~~L 237 (557)
..... ....+.+..+...+..+..+.+ +..++|+||+||++++ ++++.++.++++|||..
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 1122333333222222333333 3345799999999998 77888888888888731
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008669 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 238 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
..+.+.--.++++.+.....+.+...|. +..|+ +.+++...
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 0112222356777776433355555552 34454 44555443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-15 Score=160.79 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=108.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCC-CcccEEEEccCCCCCCCCCHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-~~~-~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999886 8999999864 221 123456666553322233444
Q ss_pred HHHHHHhhccCC-----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCcccCC
Q 008669 147 ETISYSARLRLP-----DKMPWSEKRT------------------LVERTIIEMGL-----QD----CADTVIGNWHLRG 194 (557)
Q Consensus 147 e~l~~~~~~~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~~~vg~~~~~~ 194 (557)
+.+....+.+ | ..+...+... .+.++++++.. .. ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 4443332211 1 0111111100 12233333322 11 111111 12235
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCchHHHhcC
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELF 262 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 262 (557)
+||||+||..++. + | |+|||+.....+++.|.++.++|+|+++ ++|+. .++...|
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999977641 2 7 9999998887777777777666888875 88884 5565554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=133.12 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g-~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
+.|.||||+|||||+++|++ +..++ .|++.++|.+... ....+++++|.+.+.-..+ + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 66665 7999999865321 1245788888764321111 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
.... .+.+.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|.+.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1333333332111111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCch
Q 008669 241 SRDGRTVIASIHQPSS 256 (557)
Q Consensus 241 ~~~g~tvi~~~H~~~~ 256 (557)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=129.30 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=90.7
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEeCCCCcccEEEEccCCCCCCCCCH
Q 008669 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L--~g~~~~~~--~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV 145 (557)
-|+.+ .+-+++|++++|+||||||||||++.| .+..++.. ...+.++++++. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 357999999999999999999999944 56655420 012345554432 11 11
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHH--hCCCEEEEeCCC
Q 008669 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPT 222 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~aL~--~~p~llllDEPt 222 (557)
........++. +.. +.+++.+. +. +..++ .+.+.+.-+.+++ .+|+++++|||+
T Consensus 227 ~rl~~~a~~~g----l~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 227 VRLVSIAQRFG----LDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHcC----CCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 11001111111 111 11221111 11 11222 2233444444443 469999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHh-CCCEEEEEeCCCc------------------hHHHhcCCeEEEeeCC
Q 008669 223 SGLDSAAA------------FFVTQTLRCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLSGG 271 (557)
Q Consensus 223 sgLD~~~~------------~~i~~~L~~l~~-~g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G 271 (557)
+.+|+... .++++.|+++++ .|.|||+++|... ..+...+|.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 678888888876 4999999999821 2346778999999865
Q ss_pred e
Q 008669 272 K 272 (557)
Q Consensus 272 ~ 272 (557)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-14 Score=149.40 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=118.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----C-----CCCceeEEEECCEeCC------CCccc---EEEEccCCCC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLA----S-----NAFLSGTILLNGHKTK------LSFGT---AAYVTQDDNL 139 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~----~-----~~~~~G~I~~~G~~~~------~~~~~---~~yv~Q~~~l 139 (557)
.+++|..++|+|+||||||||+|+|+|... + -.+.+|.+.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 0 0124899999984311 11122 3478888888
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC--CE
Q 008669 140 IGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP--RL 215 (557)
Q Consensus 140 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p--~l 215 (557)
....+..|++ .|...++.. +.++..++..+ +. .+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8887876655 443333211 11111111111 11 223356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhcCCeEE-EeeCC-eEEEEcCcch
Q 008669 216 LFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (557)
Q Consensus 216 lllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 281 (557)
+++|||+.++|+......++.++++ ++.|.|++ +|. ..++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 66777764 998 578899999999 99999 9888777654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-12 Score=133.19 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=68.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cccEEEEccCCC------------
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN------------ 138 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~---~G~~~~~~-----~~~~~yv~Q~~~------------ 138 (557)
+.+|++++|+||||||||||+|+|+|+..|. +|+|.+ +|++.... .+.++||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4579999999999999999999999999886 899999 88764321 135799999974
Q ss_pred ----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008669 139 ----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 139 ----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++|.+|+ ||+.|.. +. . ..+...++.++|+.+||. +.++.+ ++.||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY-----VKMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH-----HHHHHH
Confidence 5889999 9988753 11 1 122335688999999995 555553 345664
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-13 Score=140.18 Aligned_cols=166 Identities=20% Similarity=0.167 Sum_probs=104.4
Q ss_pred cccceeceeEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----CCcccEEEEc
Q 008669 68 THNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK-----LSFGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~G-------e~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~-----~~~~~~~yv~ 134 (557)
...+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+.. ...+.+.|++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999887 899999999999999999999987321 013666666554321 1235689999
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 008669 135 QDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 213 (557)
|.+.+.+ ++.|++........... .......+.+...+..+++.. +.+. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9887765 78888855433211000 001112233444444455543 4443 346999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCC
Q 008669 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 214 ~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D 263 (557)
.+||+.+..++.++|++.++ .+ +.|++ +.+..+++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~ 210 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAK 210 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHH
Confidence 78999999999999998865 34 24653 34444444
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-11 Score=125.96 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=65.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC---cc-cEEEEccCCCCCC----CCCHH
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FG-TAAYVTQDDNLIG----TLTVR 146 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~---~G~~~~~~---~~-~~~yv~Q~~~l~~----~lTV~ 146 (557)
++.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..... .+ ..+|++|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 34689999999999999999999999998875 899998 77653221 11 1699999987765 6899
Q ss_pred HHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 147 ETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 147 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
|++. |.. .++........+....++++++.++|.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1121111111222356888999999976432221 2467777763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-14 Score=142.02 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=95.1
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCC-CCCC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIG 141 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~-~l~~ 141 (557)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|+. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999999999999999998754 7899998764221 13467777764 4556
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
.+++.|++......+ . . .... .+....++ ....|||||+||+.|++++..+|++| |||
T Consensus 105 ~i~~~Deid~~~~~r---~----~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR---S----D--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc---C----C--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 666666665432111 0 0 0000 01222222 33469999999999999999999986 988
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 008669 222 TS------------GLDSAAAFFVTQTL 237 (557)
Q Consensus 222 ts------------gLD~~~~~~i~~~L 237 (557)
+. -.|...+.+|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23556666655543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-14 Score=137.08 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 205 ia~-aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 455 677888888889999999999999999998887553 2234521 56999888763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=106.10 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=45.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchH-------HHhcCCeEEEeeC
Q 008669 211 MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (557)
Q Consensus 211 ~~p~llllDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~ 270 (557)
.+|+++++|+|++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666664 5789999999985431 4678899999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-10 Score=118.01 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhh
Q 008669 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (557)
Q Consensus 75 vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (557)
+++..++|++++|+|+|||||||+++.|++.+.+. .|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~-----------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRA-----------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCH-----------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccH-----------------HHHH-------
Confidence 45556789999999999999999999999998764 56777665442100 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008669 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
....+.+.+++.. + ...|||+.+++ ++++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223444556542 1 24689999999 99999999999999999974 34555
Q ss_pred HHHHHHHHHH
Q 008669 232 FVTQTLRCLS 241 (557)
Q Consensus 232 ~i~~~L~~l~ 241 (557)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=115.62 Aligned_cols=174 Identities=14% Similarity=0.126 Sum_probs=111.2
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
-..|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45788888889999999999999999999999998765431 22 123333322 122221
Q ss_pred HHH--Hh-------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEE
Q 008669 149 ISY--SA-------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (557)
Q Consensus 149 l~~--~~-------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~lll 217 (557)
..- +. +++. ......+ ..++.+.++.++..+..-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~-----d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYID-----DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE-----CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE-----CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 00 0111 1123322 2345555555544332211 12368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEeC---------C--Cc-------hHHHhcCCeEEEeeC
Q 008669 218 LDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (557)
Q Consensus 218 lDEPtsgLD~--------~~~~~i~~~L~~l~~-~g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~ 270 (557)
+|+++...++ .....+.+.|+.+++ .|.+||+++| + |. ..+.+.+|.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999997743 234677788888876 4899999999 2 32 146788999999987
Q ss_pred CeE
Q 008669 271 GKT 273 (557)
Q Consensus 271 G~i 273 (557)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=109.31 Aligned_cols=118 Identities=19% Similarity=0.089 Sum_probs=82.8
Q ss_pred eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHH
Q 008669 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (557)
Q Consensus 73 ~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (557)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~----------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA----------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH----------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh----------------HH-HHH---
Confidence 678887 89999999999999999999999998753 677877665432100 00 000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 008669 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP-tsgLD~~~~~ 231 (557)
..+.+..++...... .+-+-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012233455432110 01234466789999988899999999999 9999998888
Q ss_pred HHHHHHHHH
Q 008669 232 FVTQTLRCL 240 (557)
Q Consensus 232 ~i~~~L~~l 240 (557)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 887777665
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=111.07 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=90.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 159 (557)
++|++++|+|+||+||||+++.|++.+.+. +| +++.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987643 34 24667777652 2356666554321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008669 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (557)
Q Consensus 160 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 239 (557)
..|+... . ..+. ..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 1233211 0 0122 23345555 45999999999 999998777655554443
Q ss_pred HH---hCCCEEEE-EeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008669 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 240 l~---~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
+. ..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 37773 678888888776777777764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-10 Score=121.16 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.6
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~ 123 (557)
..+|+|+|+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 5689999999999 999999999999999999999999886 89999999764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-11 Score=121.29 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=75.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCC
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~ 110 (557)
|+++||++.| ..+++++++.+ ++|++++|+||||||||||+++|+|++. |+
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 6677887765 35889999988 8999999999999999999999999877 65
Q ss_pred CceeEEEE---CCEeCCC-CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 111 ~~~G~I~~---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
+|+|.+ ||..... ..+.++++ |+..+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346788 8777788899999998876554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.9e-11 Score=128.15 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=98.3
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCC--CHHHHH
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL--TVRETI 149 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~e~l 149 (557)
.+++++.++..++|.|++||||||+++.|.. +.... .|++.+.+.+.+.. . ++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4778888999999999999999999999875 33332 46666666553311 0 0100011111 122222
Q ss_pred HHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCcccc--ccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-E
Q 008669 150 SYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCAD--TVIGNWHLRGISGGERRRV----------SIALEILMRPR-L 215 (557)
Q Consensus 150 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~LSgGerqRv----------~ia~aL~~~p~-l 215 (557)
..+.. ++ ....+.++| .+.+...|+.+..+ ..+ ...+|+||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 22111 11 012344444 36788888876432 111 124788988752 34556677898 8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEeCCCc
Q 008669 216 LFLDEPTSGLDSAAAFFVTQTLRCLSRD----GRTVIASIHQPS 255 (557)
Q Consensus 216 lllDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 255 (557)
+++||++.-+|.. ...+.+.|.++++. |.++|++||+|.
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 34566666666442 779999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-11 Score=134.21 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=100.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCC---------
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN--------- 138 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~--------- 138 (557)
...+++++++.+.+|+.++|+||||+|||||+++|++..++. .-|.+.+++.+.......++|+|+...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 456899999999999999999999999999999999998774 248888888765444456889887531
Q ss_pred -------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008669 139 -------------LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 139 -------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+..+++.+|+.....-..+...-. +...... +.+|.-+.... ...++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~-----~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPF-----QSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechh-----hcCCccccccccccC
Confidence 1111122221110000000000000 0000011 11121111111 124699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008669 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 239 (557)
++....++.+||+||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899888888888764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=111.69 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=91.7
Q ss_pred ceecee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 71 iL~~vs--~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
-|+.+- +-+++|+++.|.||||+|||||+..++...... . ..+.|+.-+...-+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~~~------~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHALDP------E 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCCCH------H
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCcCH------H
Confidence 344443 368999999999999999999988887543221 1 23455554432110 0
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL- 225 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~--p~llllDEPtsgL- 225 (557)
.+. .+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 --~a~----------------------~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YAK----------------------KLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HHH----------------------HTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HHH----------------------HcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 111 122210 000111 01233 2346678888755 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HhCCCEEEEEeCCCch---------------HHHhcCCeEEEeeCCeEE
Q 008669 226 ---------DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 226 ---------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv 274 (557)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+..++|.++.++.++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2223455555555 3458999999996421 256789999999887766
Q ss_pred EEcC
Q 008669 275 YFGE 278 (557)
Q Consensus 275 ~~G~ 278 (557)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-12 Score=130.42 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=82.7
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCC-CCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~-l~~~ 142 (557)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46899999999999 99999999999999999999864 6889998865311 1134567777743 5667
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCE
Q 008669 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~l 215 (557)
+++.|++......+... .....+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888885432211100 001112222333322 24899999999999999999876
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-12 Score=127.26 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=81.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCC-CCCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDD-NLIGT 142 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~-~l~~~ 142 (557)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ..+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46899999999999 99999999999999999999764 5889998864211 113356777764 34566
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCE
Q 008669 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~l 215 (557)
+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7777777433221110 0001122222333332 24899999999999999999986
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-09 Score=102.69 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
.+...+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-10 Score=107.36 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=44.8
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCcccEEEEccCCCCCCCCCHHHH
Q 008669 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 76 s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56778999999999999999999999999863 2455554321 113457899998766555555444
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-09 Score=106.13 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=47.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~--- 125 (557)
..|+++|+...+ . . ++++++ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.+.. .
T Consensus 8 ~~l~l~~~~~~~-----~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~ 71 (227)
T 1qhl_A 8 RSLTLINWNGFF-----A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSG 71 (227)
T ss_dssp EEEEEEEETTEE-----E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------------
T ss_pred eEEEEEeeeccc-----C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCcc
Confidence 357788876543 1 1 455666 899999999999999999999999886 899999997641 0
Q ss_pred ---------CcccEEEEccC
Q 008669 126 ---------SFGTAAYVTQD 136 (557)
Q Consensus 126 ---------~~~~~~yv~Q~ 136 (557)
....++|++|+
T Consensus 72 ~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 72 SRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -----CGGGBCSSEEEEEEE
T ss_pred ccccchhhHhhcCcEEEEEe
Confidence 12457888874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-08 Score=102.34 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHH---HHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR---ETISYS 152 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~--------~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~---e~l~~~ 152 (557)
.++|+|+||||||||+|.|+|..... ...+|.|.++|.+... ....|++.+.+. ..|. .++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 49999999999999999999976421 0247999999865321 122445444221 1121 111111
Q ss_pred hh--c--c-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH----HHH-HhCCCEEEEe
Q 008669 153 AR--L--R-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLD 219 (557)
Q Consensus 153 ~~--~--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia----~aL-~~~p~llllD 219 (557)
.. + . ....... .+..+.+.++++.+++.+..--.|++ +...+|+|+++|+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 00 0 0 0001111 22234456778888776543222333 3345788888988887 454 334454
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 008669 220 EPTSGLDSAAAFFVTQTLRCLSR 242 (557)
Q Consensus 220 EPtsgLD~~~~~~i~~~L~~l~~ 242 (557)
+|+|++|......+.+.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-08 Score=98.43 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=23.3
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLAS 108 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~-g~~~~ 108 (557)
.+..+++|+++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-08 Score=102.08 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.2
Q ss_pred ceecee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 71 iL~~vs--~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
-|+.+- +-+++|+++.|.||||||||||+..+++...+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455543 36899999999999999999999999986543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-07 Score=101.56 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCC
Q 008669 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 254 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~ 254 (557)
|++++|-.++++....|.+||+||+ ++|.|......+.++|..+- ..+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 44777777777777777663 2467899999996
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-08 Score=92.01 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~ 241 (557)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.5e-09 Score=98.13 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.3
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEccCCC
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDN 138 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~ 138 (557)
..+-....++|++++|+||||||||||+++|++.+ |.+.++|.+.... ....++++|+..
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 33334566789999999999999999999999864 7788888654211 113456666533
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=104.46 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCchHHHhcCCeEEE
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRLYL 267 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~v~~ 267 (557)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|+++ ||++ ..+.+++++..+
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~v 264 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPL 264 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCc
Confidence 3479999999999999999999999999996 999887777777776655456788885 8875 667777775333
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-07 Score=94.90 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=84.9
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
-.-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 3457777777999999999999999999999888754321 11 23445432 2344332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
. .+.......+.+.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2 11111111122221111 24999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEeC
Q 008669 229 AAFFVTQTLRCLSR-D-GRTVIASIH 252 (557)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvi~~~H 252 (557)
..++...++++++ . |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3367777777765 4 677777643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-08 Score=96.80 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.5
Q ss_pred EEEEEeE-EEEEEccCcccccceeceeEEEeC---CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 51 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.++++|+ ++.|. +.+.+|+|+|+++.+ |+.++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 88872 246799999999999 99999999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=91.30 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCC
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP 254 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~ 254 (557)
..+|+||+|++. +.+...++-++++| +|+.++|......+++.+.+... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998876 55556777889999 99999999998888888777643 67888888 774
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.3e-09 Score=112.84 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=84.0
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCC-CCCC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~-l~~~ 142 (557)
..+++++++.+++| ++|+||||+|||||+++|++... .+.+.++|.+.... .+.+.+++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45789999999999 99999999999999999999763 57888988653211 123455666643 3455
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008669 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
+.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 5555555322111100 00112233334444442 3788898998899999999987 7888
Q ss_pred CC
Q 008669 222 TS 223 (557)
Q Consensus 222 ts 223 (557)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 65
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.21 E-value=9.2e-07 Score=82.23 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred cce--eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 008669 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (557)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~ 109 (557)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7899999999 99999999999999999999887653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.9e-08 Score=91.76 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=42.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I--~~~G~~~ 123 (557)
.....+..++..++|++++|+||||||||||+++|++.+.. .|.+ .++|.+.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777777899999999999999999999999998752 5776 8887653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-07 Score=94.88 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=55.2
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------C---cccEEEE-ccC
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------S---FGTAAYV-TQD 136 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----------~---~~~~~yv-~Q~ 136 (557)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999988764 6889887765321 0 2457788 665
Q ss_pred CCCCCCCCHHHHHH
Q 008669 137 DNLIGTLTVRETIS 150 (557)
Q Consensus 137 ~~l~~~lTV~e~l~ 150 (557)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444334444443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=9.5e-06 Score=84.23 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 252 (557)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334455443 45566677765555 56666665
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=82.88 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.8
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=81.68 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=27.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~ 109 (557)
++++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-06 Score=84.18 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~ 254 (557)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 578899999986
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-06 Score=81.35 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-HHhcCCeEEEee
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-i~~~~D~v~~L~ 269 (557)
+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678889999998888887654333 3345666555555544332 356888888875321 256788888874
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-06 Score=90.88 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=52.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE-eeCCeEEEEcCcch
Q 008669 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETSA 281 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~~ 281 (557)
.+|++|++||+..-.+. .++..+.+.+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 48999999999887764 6788899999988888899999999975443333444433 45677776666643
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-08 Score=99.36 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.2
Q ss_pred cccceeceeEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.+..|++++..+..++ ++||+||||||||||+++|.+++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887776 9999999999999999999998763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-07 Score=89.95 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=44.6
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCC------CcccEEEE
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKL------SFGTAAYV 133 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~---g~~~~~~~~~G~I~--------~~G~~~~~------~~~~~~yv 133 (557)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.+. .+|.+... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887665 89998 88876421 12457788
Q ss_pred ccCC
Q 008669 134 TQDD 137 (557)
Q Consensus 134 ~Q~~ 137 (557)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-06 Score=79.66 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=30.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN 119 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~ 119 (557)
+|++++|+||||||||||++.|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987532 35655443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.2e-05 Score=78.27 Aligned_cols=142 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred eecee-EEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 72 L~~vs-~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~--~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++. .| |. ...+.|+.-+..+ ...+-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~---~g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA---GG-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT---TT-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc---cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 46899999999999999999999998874 2211 00 11 1345666554422 22222
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHH----hCCCEEEEeCCCC
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~----~~p~llllDEPts 223 (557)
.....++. ... +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22222221 111 1223322111 1123333 34555566666 5699999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHh-CCCEEEEEeCC
Q 008669 224 GLDSA------------AAFFVTQTLRCLSR-DGRTVIASIHQ 253 (557)
Q Consensus 224 gLD~~------------~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (557)
-.+.. ...+++..|+++++ .|.+||++.|-
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 65432 12455556666665 48888888885
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.9e-05 Score=76.12 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEeCCCc---hHH
Q 008669 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQPS---SEV 258 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 258 (557)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233444433321 2356777888752 334
Q ss_pred HhcCCeEEEe
Q 008669 259 FELFDRLYLL 268 (557)
Q Consensus 259 ~~~~D~v~~L 268 (557)
.+.|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556655444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-06 Score=83.30 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=84.6
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
..-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.-+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 4467777777999999999999999999999888743211 11 234555432 344443
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
.. +.......+.+.+..+ | . ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 22 1111111111111111 0 0 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeCC
Q 008669 229 AAFFVTQTLRCLSRD-GRT--VIASIHQ 253 (557)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vi~~~H~ 253 (557)
..++.+.++++.++ |.. +|++-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 44566777777653 666 7777553
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-06 Score=82.80 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
..++|++++|.|+||||||||+++|+|. .|+|.+++++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 4478999999999999999999999986 3778888765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-06 Score=78.45 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=6e-05 Score=77.09 Aligned_cols=143 Identities=24% Similarity=0.275 Sum_probs=80.3
Q ss_pred eecee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008669 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 72 L~~vs-~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44442 568999999999999999999999888642 221 011 10 1345566544332 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH-HHHHHHHHHHHH---hCCCEEEEeCCCCCC
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGL 225 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~ia~aL~---~~p~llllDEPtsgL 225 (557)
.....+. ... +++++.+- +. +..++. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 2222221 111 11222111 11 112333 335677778887 579999999999755
Q ss_pred CH--------HH----HHHHHHHHHHHHh-CCCEEEEEeCC
Q 008669 226 DS--------AA----AFFVTQTLRCLSR-DGRTVIASIHQ 253 (557)
Q Consensus 226 D~--------~~----~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (557)
+. .. ..+++..|+++++ .|.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 2445555666655 48899988775
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=81.76 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEeCCCchHHHhcCCeEE
Q 008669 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 195 LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v~ 266 (557)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 68999999 7899877 67788888888763 43 556666663 45555665543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.3e-06 Score=92.65 Aligned_cols=129 Identities=19% Similarity=0.115 Sum_probs=71.8
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHH
Q 008669 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETIS 150 (557)
Q Consensus 76 s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~ 150 (557)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+.+.+|...++.. +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 3457889999999999999999999999765431 125766 455432110 1223343333222111 0000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
...||. |. ..++ .......-..+..++++| |+.|+|+.+.
T Consensus 77 ------------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp ------------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred ------------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 112221 11 0111 112222335678899999 9999998876
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
. .++.+.+.+..+|++.|..
T Consensus 117 ~----~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 117 R----AWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp H----HHHHHHHTTCCEEEEEECG
T ss_pred H----HHHHHHHccCCEEEEecCC
Confidence 3 3333444678888888884
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-06 Score=88.33 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~ 118 (557)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 566654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.76 E-value=4e-06 Score=79.64 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=33.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987653 5777665543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.4e-05 Score=75.78 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999875
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.73 E-value=5.8e-05 Score=80.21 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=69.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
++.+++++|++||||||++..|++.+.+. .++|.+- .-|.. .. ...|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv--------------~~D~~--r~-~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLV--------------AADVY--RP-AAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEE--------------EECCS--CH-HHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE--------------ecCcc--ch-hHHHHHH----------
Confidence 58899999999999999999999887542 3444432 22210 00 1122222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT-SG--LDSAAAFFVTQTL 237 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt-sg--LD~~~~~~i~~~L 237 (557)
.+-+..|+.-.... .+...-+--+-+++.+...+++++|+|+|. .+ .|+....++.+++
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 12222333211100 011111222234555555689999999997 34 7887777777766
Q ss_pred HHHHhCCCEEEEEeCC
Q 008669 238 RCLSRDGRTVIASIHQ 253 (557)
Q Consensus 238 ~~l~~~g~tvi~~~H~ 253 (557)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 6554344444555543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.73 E-value=8.3e-06 Score=77.58 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.+|++++|+||||||||||++.|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1e-05 Score=74.55 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=29.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999863 556666543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.64 E-value=9.3e-06 Score=89.05 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G-~I~-~~G~~ 122 (557)
.+++|++++|+|+||||||||+++|+|++.+. +| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998774 54 674 77754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.5e-05 Score=77.41 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=78.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
+..|+.+++.||+||||||++..+....... .| ....+..+.+.+......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~---~~-----------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQ---ND-----------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHH---TT-----------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhh---cC-----------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 3579999999999999999888775321100 01 012234555555433333444544321110000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccc--CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 008669 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIG--NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQ 235 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~ 235 (557)
. ..|.....+.... +..+-=.+.|.-.+.. ...+.+-+++++||.-. ++|.......++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 0000000000000 0000012456655543 33578999999999976 687776655555
Q ss_pred HHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008669 236 TLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 236 ~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+.....+-+++++|..-+.+...++++.
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 55444333456666665555555555543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.60 E-value=2.2e-05 Score=72.00 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-05 Score=69.70 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=25.9
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
+++.++.+.+| +++|+|||||||||++++|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556666665 99999999999999999997
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.9e-05 Score=74.86 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999865
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.1e-05 Score=83.15 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0005 Score=73.31 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=96.0
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
-.-|+.+.+-+++|+++.|.|++|+|||||+..++...... .| ..+.|+.=+ ++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 34577777779999999999999999999998887643211 11 123443322 233322
Q ss_pred HHH--HhhccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEE
Q 008669 149 ISY--SARLRLP------DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFL 218 (557)
Q Consensus 149 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llll 218 (557)
..- +.....+ ..++..+. .++.+.++.+.-.+. .+-+ ..++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 0011100 01222222 333333333321111 1111 124676664 34555555 48999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEeCCCc------------------hHHHhcCCeEEEee
Q 008669 219 DEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLS 269 (557)
Q Consensus 219 DEPtsgLD~----------~~~~~i~~~L~~l~~-~g~tvi~~~H~~~------------------~~i~~~~D~v~~L~ 269 (557)
|..+.-.+. .....+.+.|+.+++ .|.+||+++|-.. ..+.+.+|.|+.|+
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 122467777888876 4899999988321 02466788888886
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.46 E-value=4.6e-05 Score=81.02 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=28.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~ 109 (557)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446789999999999999999999999987663
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.39 E-value=1.1e-05 Score=83.12 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
.+.+++++++...+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 356889999999999999999999999999999999987553 455554443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00021 Score=67.14 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.002 Score=62.25 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 253 (557)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888988666555555544422 13588888884
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=4.7e-05 Score=70.40 Aligned_cols=38 Identities=37% Similarity=0.463 Sum_probs=29.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G--~I~~~G~ 121 (557)
.+|++++|+|++||||||+.+.|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999987643 24 5555554
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00038 Score=70.61 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=35.8
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 210 ~~~p~llllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
..++++|++||+.. ..|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447788899999888777788888887654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.29 E-value=2.3e-05 Score=81.48 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=44.2
Q ss_pred EEEEEeEEEEEEccCccccccee--------------ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+|++..++ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 366777777764 3466888 899999999999999999999999999998764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.25 E-value=9.2e-05 Score=71.89 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=26.9
Q ss_pred eeceeEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 72 LEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 72 L~~vs~~i~---~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777776 899999999999999999999998765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=6.2e-05 Score=77.91 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=32.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999977653 5666665543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=68.29 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=26.1
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
+.+.++.+.+| +++|+|||||||||++++|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34556666664 999999999999999999863
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0033 Score=65.02 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=29.0
Q ss_pred cceecee--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455543 35899999999999999999999888753
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00047 Score=63.14 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.15 E-value=6.2e-05 Score=82.57 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=40.0
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
..+++++++.+ +|+.++|+||||+|||||+++|++...+. .|.|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34678888877 89999999999999999999999988653 67776655
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0004 Score=73.92 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=31.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLAS------N---AFLSGTILLNGHK 122 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~------~---~~~~G~I~~~G~~ 122 (557)
-.++|+|+||+|||||+|.|+|.... + ...+|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 37999999999999999999997530 0 0246899999975
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00081 Score=66.62 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.-+.|.||+|+|||||+++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00011 Score=69.86 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G--~I~~~G~ 121 (557)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 4689999999999999999999999987643 56 6777654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=67.83 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=27.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~ 118 (557)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865321112566654
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00052 Score=66.38 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEee
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 269 (557)
+++++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777777999999999 66778889999999986
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00042 Score=64.45 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=20.9
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999988887 5799999999999999999974
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00022 Score=67.48 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999987653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0026 Score=64.47 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.3
Q ss_pred ceecee-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 71 iL~~vs-~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5689999999999999999999988874
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00054 Score=71.29 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.9
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
.+++.++++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 347778888775 99999999999999999986
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00064 Score=64.92 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.8
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCC
Q 008669 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQP 254 (557)
Q Consensus 211 ~~p~llllDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~ 254 (557)
.+|.++++||.-.-- +......+.+.+......+.. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233377788888887666655 77777754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=65.33 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432122466666543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00033 Score=65.12 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.2
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999865
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0002 Score=67.22 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3568999999888875 689999999999999999863
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0053 Score=63.34 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00012 Score=76.09 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=34.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.+.+.|++..+ ..+.+++++++.| +|+|+||+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 46677776554 3466889999877 9999999999999999988644
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00028 Score=74.80 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=38.2
Q ss_pred eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 73 ~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
+++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 577777 89999999999999999999999998764 6777776654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=59.35 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00053 Score=64.47 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00038 Score=64.61 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.+|.++.|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0066 Score=58.95 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=68.18 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00069 Score=71.04 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC-----------CCCCCCceeEEEECCE
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR-----------LASNAFLSGTILLNGH 121 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~-----------~~~~~~~~G~I~~~G~ 121 (557)
..+..|..++|+|+||+|||||+|+|+|. ..| ..|.+.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 34567888999999999999999999997 233 3788887763
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00046 Score=67.75 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=34.8
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 344444 567789999999999999999999998764 2456677653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00023 Score=73.44 Aligned_cols=37 Identities=35% Similarity=0.473 Sum_probs=33.6
Q ss_pred cceeceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 008669 70 NVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~--~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888888999988 9999999999999999999865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=60.05 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=59.85 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=61.09 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00088 Score=62.98 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00024 Score=71.84 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.4
Q ss_pred ec-eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008669 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 73 ~~-vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777765 9999999999999999999999987653 455655443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00028 Score=72.21 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=35.9
Q ss_pred cccceeceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 008669 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35588888888999998 999999999999999999987644
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.027 Score=60.73 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=29.0
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34566655689999999999999999999877764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=59.63 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.021 Score=59.18 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 689999999999999999999987764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=59.14 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998664
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0011 Score=64.77 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.9
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.++++++..++| +.|.||||+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455555555555 88999999999999999998653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=59.83 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=62.52 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999998743
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0022 Score=59.05 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=62.14 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=58.87 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998543
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=62.40 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999754
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=61.35 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=29.0
Q ss_pred HHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 008669 208 EILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIH 252 (557)
Q Consensus 208 aL~~~p~llllDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H 252 (557)
++..+|+++++||+-.- .+.......++.+..+...|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 34468999999998642 3333233334444445567889999998
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=57.10 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDAL 102 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L 102 (557)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0029 Score=59.36 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=59.55 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=58.32 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0036 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0036 Score=66.69 Aligned_cols=131 Identities=9% Similarity=0.108 Sum_probs=76.8
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
.-|+.+.+-+++|+++.|.|++|+|||||+--++..... . | ..+.|+.=+ ++..+..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~----~------g-------~~vl~fSlE------ms~~ql~ 241 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----N------D-------DVVNLHSLE------MGKKENI 241 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH----T------T-------CEEEEECSS------SCTTHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH----c------C-------CEEEEEECC------CCHHHHH
Confidence 356666666899999999999999999998877643211 1 1 234555432 2222221
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008669 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
. +... ...+++...- .-|. ..|+..+.+|+.-|...+.+.++++.|+|. ++.
T Consensus 242 ~------------------R~~~--~~~~i~~~~l-~~g~---~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~-- 293 (444)
T 3bgw_A 242 K------------------RLIV--TAGSINAQKI-KAAR---RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSV-- 293 (444)
T ss_dssp H------------------HHHH--HHSCCCHHHH-HHTG---GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH--
T ss_pred H------------------HHHH--HHcCCCHHHH-hccc---CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH--
Confidence 1 0000 0112210000 0010 127888899999998888888999999874 443
Q ss_pred HHHHHHHHHHHHh-CCCE--EEEEeC
Q 008669 230 AFFVTQTLRCLSR-DGRT--VIASIH 252 (557)
Q Consensus 230 ~~~i~~~L~~l~~-~g~t--vi~~~H 252 (557)
.++...++++.+ .|.. +|++-+
T Consensus 294 -~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 294 -NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp -HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 345556666654 4666 666644
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0039 Score=58.37 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=58.18 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008669 83 TLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g 104 (557)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.003 Score=58.32 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999987654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0096 Score=55.98 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEee
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 269 (557)
+.+++++||--- +|+. +++.++.++..|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 6643 36677887778999999998 66678899999998875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.004 Score=62.35 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3578999999999999999999986542 24566665
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0023 Score=60.35 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0045 Score=58.14 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.063 Score=65.65 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0046 Score=56.53 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0049 Score=57.39 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.005 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998543
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.037 Score=56.91 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445568899999999999999998754
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=56.23 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0043 Score=61.28 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0052 Score=57.79 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0053 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.024 Score=54.22 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEee
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 269 (557)
+.+++++||--- +|+. +++.++.++..|+.||++-+ .++.++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6643 33777787778999999999 78888999999999886
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.052 Score=52.48 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=45.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CchHHHhcCCeEEEee
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~ 269 (557)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877643 666666677789999999999 8889999999999986
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0087 Score=60.66 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=31.9
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46789988888 7899999999999999999999874
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.013 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.1 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0061 Score=56.08 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0063 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0055 Score=56.86 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0074 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=61.41 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=28.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C--C-CCceeEEEECC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S--N-AFLSGTILLNG 120 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~-----~--~-~~~~G~I~~~G 120 (557)
|-.++|+|.+|+|||||+|.|+|... | + .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 0 12357777765
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0084 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0059 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0072 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0074 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=58.66 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0059 Score=55.87 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0074 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0082 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.086 Score=64.47 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=87.4
Q ss_pred cceecee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH---H--
Confidence 3466654 35899999999999999999998877643211 11 23556655432211 1
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEPtsgL 225 (557)
.+.. +|++.. +-.+-+ + -++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~~----------------------lGvd~~-~L~i~~--~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YARK----------------------LGVDID-NLLCSQ--P--DTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHHH----------------------TTCCGG-GCEEEC--C--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHHH----------------------cCCCHH-HeEEcC--C--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 0111 222100 000100 1 13333 234555554 579999999998765
Q ss_pred CH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCCc---------------hHHHhcCCeEEEeeCCeE
Q 008669 226 DS-------------AAAFFVTQTLRCL---S-RDGRTVIASIHQPS---------------SEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 226 D~-------------~~~~~i~~~L~~l---~-~~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~i 273 (557)
.. ...+.+.+.+++| + +.|.+||++.|-.. ..+..++|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 35899999987421 245678898888876554
Q ss_pred EEEc
Q 008669 274 VYFG 277 (557)
Q Consensus 274 v~~G 277 (557)
...|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 4444
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0068 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0082 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0081 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0078 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0082 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0085 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0086 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0087 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0088 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0056 Score=63.84 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 212 ~p~llllDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
.|.++++||--.=++ +.....+.+.+++.++.|..++++||.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999887774 66777788888888777889999999875
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0077 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4568999999999999999998753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0077 Score=55.21 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0082 Score=55.21 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.16 Score=53.76 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999997654
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=54.47 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0088 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=53.25 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0089 Score=54.69 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0099 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=57.50 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0092 Score=56.78 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0095 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=52.77 Aligned_cols=23 Identities=43% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.01 Score=54.48 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=56.51 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.011 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.021 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=28.0
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
+..+|..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44566666554 588999999999999999998875
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0077 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.022 Score=53.84 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44677766655 5889999999999999999999865
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.16 Score=62.92 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=86.9
Q ss_pred ceecee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008669 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 71 iL~~vs--~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~~-- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---IY-- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---HH--
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---HH--
Confidence 455554 35899999999999999999998887653321 11 12445544332111 10
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCC
Q 008669 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLD 226 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD 226 (557)
+.+ +|++. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 428 ---a~~----------------------lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 428 ---ARK----------------------LGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp ---HHH----------------------TTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---HHH----------------------cCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 111 12110 0001111 12332 3456666665 4799999999876542
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCch---------------HHHhcCCeEEEeeCCeEE
Q 008669 227 -S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 227 -~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv 274 (557)
+ ...+.+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|+.....
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~ 555 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccc
Confidence 1 1234455666666 34 68899998874211 356778888888765543
Q ss_pred EEc
Q 008669 275 YFG 277 (557)
Q Consensus 275 ~~G 277 (557)
..|
T Consensus 556 ~~g 558 (2050)
T 3cmu_A 556 KEG 558 (2050)
T ss_dssp EET
T ss_pred cCC
Confidence 333
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.011 Score=58.40 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=58.69 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.013 Score=57.52 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.013 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.012 Score=54.73 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.019 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999854
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=60.51 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.015 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.014 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999987643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=56.55 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.01 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.017 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.021 Score=54.71 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998543
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.025 Score=57.86 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999765
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.018 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.017 Score=57.15 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.019 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.018 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.017 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999974
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.016 Score=53.78 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.017 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.025 Score=53.95 Aligned_cols=28 Identities=46% Similarity=0.659 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
-+|.++.|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.017 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.02 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.019 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.02 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.011 Score=59.30 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=56.99 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.018 Score=53.63 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.015 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.023 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.018 Score=52.48 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.025 Score=56.32 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008669 83 TLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g 104 (557)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.018 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.019 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.022 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.02 Score=55.37 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
..+|.++.|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.027 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.024 Score=52.48 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988644
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.02 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.024 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.021 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.032 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.024 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677999999999999999998764
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.034 Score=53.13 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=40.0
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCch---------HHHhcCCeEEEee
Q 008669 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS---------EVFELFDRLYLLS 269 (557)
Q Consensus 210 ~~~p~llllDEPts----gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~---------~i~~~~D~v~~L~ 269 (557)
-.+|+++++|--+. .-|.....++...|+.+++ .|.+++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35789999986432 1245556677778888776 58999999886422 1235678887775
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.017 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.025 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.031 Score=59.68 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=29.5
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 355555 456689999999999999999999998653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.023 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999754
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.029 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.024 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.03 Score=57.34 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999765
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.027 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.80 E-value=0.025 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.036 Score=51.99 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~ 166 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDP 166 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence 3578999999765 7877777766666432 2356788888775
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.034 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.028 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.034 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.026 Score=53.32 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.034 Score=53.05 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.031 Score=56.80 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.041 Score=52.96 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+|.++.|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.029 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.035 Score=53.19 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.+|.++.+-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.037 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.038 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.016 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.50 E-value=0.026 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.11 Score=55.65 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=53.7
Q ss_pred cCCCCHHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 192 LRGISGGERRRVSIAL--EILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~--aL~~---------------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
..+.||||+|-.-+|. +++. .-.++++||. +-+|.......+++++++ |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999644443 3332 1257999999 999999999999999876 6777777754
Q ss_pred chHHHhcCCeEEEee
Q 008669 255 SSEVFELFDRLYLLS 269 (557)
Q Consensus 255 ~~~i~~~~D~v~~L~ 269 (557)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3567788888775
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.034 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.036 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.37 E-value=0.017 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.034 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.024 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008669 83 TLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g 104 (557)
=-++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999964
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.036 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||+|.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.053 Score=54.78 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.013 Score=59.31 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 667999999 788999888888888876533 345666776653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.012 Score=57.54 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=23.4
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 75 vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+....+.| +.|.||+|+|||||+++|++..
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33344445 7899999999999999998753
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.038 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.043 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.041 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.055 Score=50.24 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc---------hHHHhcCCeEEEee
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLS 269 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~ 269 (557)
+++++++||--. +|+ .+++.|+.++++|..|+++.++.. ..+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 543 366777777778999999888422 34556688886664
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.057 Score=54.84 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999974
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.055 Score=56.61 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.06 Score=47.57 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+..+|++||. ..|++..+..+.+.|... ..+..+|++|+.+..
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 4468999998 468888888888887332 234567777776543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.064 Score=49.63 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999995 456777777777666553 2345667777664
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.067 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.072 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.088 Score=52.86 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998876
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.074 Score=54.62 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.074 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.047 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.08 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44567899999999999999999865
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.065 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|.+++|||||+|.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.028 Score=52.23 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.067 Score=56.57 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.078 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=91.66 E-value=0.054 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 008669 84 LTALMGPSGSGKSTLLDA-LSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~-L~g~ 105 (557)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.1 Score=52.57 Aligned_cols=52 Identities=13% Similarity=-0.005 Sum_probs=30.1
Q ss_pred HhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhc
Q 008669 210 LMRPRLLFLDEPT-SGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL 261 (557)
Q Consensus 210 ~~~p~llllDEPt-sgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~ 261 (557)
+.++++|++||.- ..+++..+..++. ++......++.+|++|+.+..+....
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2445444444554 55544334567888888766555443
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.15 Score=48.03 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 200 RRRVSIALEIL--MRPRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 200 rqRv~ia~aL~--~~p~llllDEPts--gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
++.+.-++..+ .+.++++|||.+. .++.....++++.|.+- -++..||+|...+.+++.+.+|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 45566667777 5679999999976 34444555677777642 2578999999999999999999999997643
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.088 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999997654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=91.54 E-value=0.1 Score=52.71 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345678999999999999999998653
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.074 Score=58.51 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=27.0
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4666653 234578999999999999999999974
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.081 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.092 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999998765
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.019 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.074 Score=56.81 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
|=.++|+|++|+|||||+|.|.|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445999999999999999999985
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.085 Score=57.65 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=91.26 E-value=0.18 Score=50.92 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=27.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
...+|+.-..+ .|.-++|.|+||+|||||.-.|..
T Consensus 135 ~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 135 VAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred cceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45678854444 588999999999999999888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 557 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-34 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-32 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-31 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-30 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-29 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-29 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-28 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 4e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 6e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 7e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 7e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.002 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.003 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 0.003 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.004 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.004 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 130 bits (327), Expect = 1e-34
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I +G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------V 99
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
++ +Q ++ T++E I + D+ + + + +TV+G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG+R R+S+A + L LD P LD V ++ C +T I
Sbjct: 156 GVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ E D++ +L G + ++G
Sbjct: 215 TSKM--EHLRKADKILILHQGSSYFYG 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 127 bits (321), Expect = 2e-34
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 20/235 (8%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
K++T + + L+ + + G ++MGPSGSGKST+L + L G
Sbjct: 5 KNVTKTYKMGEEIIY-ALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPT--EG 60
Query: 115 TILLNGHK---------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+ ++ K TK+ +V Q NLI LT E + + M E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+R + L++ N +SGG+++RV+IA + P ++ D+PT L
Sbjct: 121 RRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 226 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
DS + Q L+ L+ + G+TV+ H V +R+ L G+ +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 124 bits (313), Expect = 4e-33
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T G + L + G L+GPSG GK+T L ++ G I
Sbjct: 12 LTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGD 67
Query: 121 HKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+ V Q + +TV E I++ +++ K P E V +
Sbjct: 68 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELL 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
+++ + +SGG+R+RV++A I++ P +L +DEP S LD+ + +
Sbjct: 125 QIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 179
Query: 238 RCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L + T I H E + DR+ +++ G+ + G + +
Sbjct: 180 KKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 122 bits (309), Expect = 2e-32
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
N +L+ + E G A +G SG GKSTL++ + SG IL++GH K
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIK 83
Query: 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
S + Q DN++ + TV+E I +++ + K I M L
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLP 141
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT +G ++ +SGG+++R+SIA L P +L LDE TS LD + + + L L
Sbjct: 142 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
S+ RT + H+ S D++ ++ G V G E A+ G
Sbjct: 201 SK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHR---ELIAKQGA 245
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 5e-32
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ G+ +L+G++ E G + L+GP+G+GK+T L +S+ + + SG + + G
Sbjct: 8 LRKRIGKKE-ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFG 63
Query: 121 HKTKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+Y+ ++ + E + + A SE +VER
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEI 120
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
GL + + + S G R++ IA +++ PRL LDEPTSGLD A V +
Sbjct: 121 AGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 175
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ S++G T++ S H EV L DR+ L+ G V G E
Sbjct: 176 LKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 119 bits (301), Expect = 3e-31
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 29/242 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ G VL+G++ A G + +++G SGSGKST L ++ L G I++NG
Sbjct: 8 LHKRYGGHE-VLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FL--EKPSEGAIIVNG 63
Query: 121 HKTKLSFGTA------------------AYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
L V Q NL +TV E + + L +
Sbjct: 64 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLS 121
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+ R + + ++G+ + A + +SGG+++RVSIA + M P +L DEPT
Sbjct: 122 KHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
S LD V + ++ L+ +G+T++ H+ + + L GK G+
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQV 236
Query: 283 FE 284
F
Sbjct: 237 FG 238
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (299), Expect = 4e-31
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 26/240 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ GE L+G++ G +T ++GP+GSGKSTL++ ++ L ++ G +
Sbjct: 10 IVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFEN 65
Query: 121 HKTKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLP----------DKMPWS 164
Y Q + +TV E +
Sbjct: 66 KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 125
Query: 165 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
E + + + L D G +SGG+ + V I ++ P+++ +DEP +G
Sbjct: 126 EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ A + + L G T + H+ V D LY++ G+ + G +
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 3e-30
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK- 122
T L ++ + G + ++G SG+GKSTL+ ++ G++L++G +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL 69
Query: 123 TKLSFGTA-------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
T LS + Q NL+ + TV ++ L P E + V +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLS 126
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+GL D D+ N +SGG+++RV+IA + P++L DE TS LD A + +
Sbjct: 127 LVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 236 TLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ ++R G T++ H+ V + D + ++S G+ + S F
Sbjct: 182 LLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (291), Expect = 3e-30
Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA---FLSGTIL 117
+ + G H ++G+ G + L+G +G+GK+T L A++ + + +G +
Sbjct: 12 LHVYYGAIH-AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
N ++ A V + + LTV E + A R K KR L +
Sbjct: 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR---KDKEGIKRDLEWIFSLFP 127
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L++ + G +SGGE++ ++I ++ RP+LL +DEP+ GL V + +
Sbjct: 128 RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ ++++G T++ ++ Y+L G+ V G+ S +
Sbjct: 183 QKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 113 bits (285), Expect = 4e-29
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 17/232 (7%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G L + G AL+G SGSGKST+ ++ R G IL++GH +
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID--EGHILMDGHDLR 80
Query: 125 LSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ A V+Q+ +L +++ + + I +
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFI--NKM 138
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ DT+IG + +SGG+R+R++IA +L +L LDE TS LD+ + + L
Sbjct: 139 DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
L + RT + H+ S E D + ++ G V G S E AQ G
Sbjct: 198 LQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHS---ELLAQHGV 243
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 4e-29
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--- 121
N VL+GLT PG +TAL+GP+GSGKST+ L L G +LL+G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNL--YQPTGGQLLLDGKPLP 79
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ + A V Q+ + G +++E I+Y + + + + I GL
Sbjct: 80 QYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS-GL 137
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
DT + +SGG+R+ V++A ++ +P +L LD+ TS LD+ + V Q L
Sbjct: 138 PQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 240 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
R+V+ S + E D + L GG G + + G
Sbjct: 197 SPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQ---QLMEKKGC 244
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 112 bits (282), Expect = 6e-29
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 32/240 (13%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L + L L+G G + L+GP+G+GKSTLL ++ + G+I
Sbjct: 1 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQ 56
Query: 118 LNGH------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G TKL+ AY++Q V ++ + + L+
Sbjct: 57 FAGQPLEAWSATKLALHR-AYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLN 107
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSG 224
+ L D +SGGE +RV +A +L +LL LDEP +
Sbjct: 108 DVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 162
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
LD A + + L L + G ++ S H + R +LL GGK + G
Sbjct: 163 LDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 112 bits (282), Expect = 6e-29
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V + ++ +L ++ A+P ++ A GPSG GKST+ L +G I ++G
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDG 63
Query: 121 HK-TKLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+S +V+QD ++ T+RE ++Y D+ W L
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLD-LAFARSF 121
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ D +T +G ++ ISGG+R+R++IA L P++L LDE T+ LDS + V +
Sbjct: 122 VENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
L L + GRT + H+ S D++Y + G+ G+ + E A
Sbjct: 181 ALDSLMK-GRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHN---ELVATHPL 230
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 2e-28
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 61 VTLS-NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN 119
+ ++ +L+ + + G + ++G SGSGKSTL + R +G +L++
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RF--YIPENGQVLID 63
Query: 120 GH-----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
GH V QD+ L+ ++ + IS + +K+ ++ K I
Sbjct: 64 GHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFI 122
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
E+ I G+SGG+R+R++IA ++ P++L DE TS LD + +
Sbjct: 123 SELREGYNT---IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + + GRTVI H+ S + DR+ ++ GK V G+
Sbjct: 180 RNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 110 bits (277), Expect = 3e-28
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V GE + ++ + G L+GPSG GK+T L ++ + G I +
Sbjct: 9 VWKVFGEVT-AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGD 64
Query: 121 HK---------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
A V Q L +TV + I++ +LR K+P E V
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVR 121
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+GL + + +SGG+R+RV++ I+ +P++ +DEP S LD+
Sbjct: 122 EVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 232 FVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L+ L + G T I H E + DR+ +++ G G ++
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 106 bits (267), Expect = 2e-27
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 24/219 (10%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
++L +DL+V G VLE +T E G + GP+G GK+TLL +S+ L
Sbjct: 1 SKLEIRDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 54
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
I+ NG G ++ ++ + ++V + + A L +
Sbjct: 55 KG---EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNE 106
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+ + + + D L +S G RRV +A +L+ + LD+P +D +
Sbjct: 107 IMDALESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268
V +++ + ++ VI S E D L
Sbjct: 161 KHKVLKSILEILKEKGIVIISSR----EELSYCDVNENL 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 2e-26
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT + GE V + + G +GPSG GKSTLL ++ + + +
Sbjct: 6 VTKAWGEVV-VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGE 61
Query: 121 H---KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
T + V Q L L+V E +S+ +L V + +
Sbjct: 62 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVL 118
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L D +SGG+R+RV+I ++ P + LDEP S LD+A + +
Sbjct: 119 QLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 238 RCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L R GRT+I H E L D++ +L G+ G+ +
Sbjct: 174 SRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.4 bits (247), Expect = 3e-24
Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
R+ K+++ G+ L+ + E G ++GPSG+GK+T + ++ +
Sbjct: 2 VRIIVKNVSK--VFKKGKVV-ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 110 AFLSGTILLNGHK--------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
+G + + V Q L LT E I++ KM
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KM 112
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
E R VE + + + R +SG +++RV++A ++ P LL LDEP
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 222 TSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
S LD+ ++ + SR G T++ H P +++F + DR+ +L GK V G+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 281 AAFE 284
++
Sbjct: 227 DLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 93.6 bits (232), Expect = 2e-22
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 19/218 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-- 128
L+ L+ E G ++GP+G+GK+ L+ ++ ++ ILL+G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDVTDLSPEK 71
Query: 129 -TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
A+V Q+ +L + V++ + + R M + V T ++ ++ D
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMR------MKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRT 246
SGGE++RV++A ++ P++L LDEP S LD + L L ++ T
Sbjct: 126 LTL-----SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V+ H +E + DR+ ++ GK + G+ FE
Sbjct: 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 87.0 bits (215), Expect = 6e-20
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA---AYVTQDD 137
L+GP+G+GKS L+ ++ + + G + LNG +V QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
L L+V I+Y + E+ V ++G+ D SG
Sbjct: 80 ALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----SG 129
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSS 256
GER+RV++A ++++PRLL LDEP S +D + + LR + ++ H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-I 188
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFE 284
E L D + ++ G+ V G+ F
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 22/193 (11%), Positives = 45/193 (23%), Gaps = 34/193 (17%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145
+ G G GK+TL+ + RL +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEV------------------------ 36
Query: 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205
R +K+ + L + + +
Sbjct: 37 -RDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE---LAIPILERAY 92
Query: 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265
R +++ +DE + F + + V+A+I +V L +
Sbjct: 93 REAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEI 149
Query: 266 YLLSGGKTVYFGE 278
L G +
Sbjct: 150 RRLPGAVLIELTP 162
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH-LRGISGGERRRV 203
+ ++ + + + E G++ A + + + +SGGE+
Sbjct: 282 IYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVA 341
Query: 204 SIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
++AL LDE + LD + +R I + +F
Sbjct: 342 ALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMF 399
Query: 260 ELFDRLY 266
E D L
Sbjct: 400 EKSDALV 406
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (86), Expect = 0.003
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 72 LEGLTGYAEPGT-------LTALMGPSGSGKSTLLDALS 103
L Y T+++GP+GSGKS ++DA+S
Sbjct: 8 LSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAIS 46
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF 111
G + L GPS GKST++ L R+ + F
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHF 31
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
L + GP+G GKST L+++L ++A++ G I+
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (90), Expect = 7e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF 111
GTL + PSG+GKS+L+ AL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDT 31
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTIL 117
G + L G GSGKST+ +AL++ L
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 37.8 bits (86), Expect = 0.002
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 12/202 (5%)
Query: 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134
L G E ++T G GSGK+ ++ L + FL K +++ A Y+
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA-VSKGEVAQPKAVYID 85
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
E R+ + + +T+++ T + +
Sbjct: 86 T-----------EGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 134
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
I G ++ + + R + TL L+ V+ +Q
Sbjct: 135 IQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 194
Query: 255 SSEVFELFDRLYLLSGGKTVYF 276
S++ F GG V
Sbjct: 195 SAKPDAFFGMAEQAIGGHIVGH 216
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.3 bits (85), Expect = 0.002
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
L G S +GKS ++ L S L G L + D + ++
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPE 67
Query: 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
A M + R +++ +
Sbjct: 68 FRALEGAWAEGVVAMARAGARIIIDDVFLGG 98
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.003
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 87 LMGPSGSGKSTLLDALSSRL 106
LMG SGSGKS + ++ +L
Sbjct: 11 LMGVSGSGKSAVASEVAHQL 30
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.003
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 53 TWKDLTVMVTLSNG--ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
T K + ++ + VL + GT+ AL+ P G+GKS L L++++A
Sbjct: 2 THKPINILEAFAAAPPPLDYVLPNM----VAGTVGALVSPGGAGKSMLALQLAAQIAGG 56
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.004
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLS 113
L GPSG+GKSTLL L +S S
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFS 31
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLS 113
+ GPSG+GKSTLL L + + S
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFS 32
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.61 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.17 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.87 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.42 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.28 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.15 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.14 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.04 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.0 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.99 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.98 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.81 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.66 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.64 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.6 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.55 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.48 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.45 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.44 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.39 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.31 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.24 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.24 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.21 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.19 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.18 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.15 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.14 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.07 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.07 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.99 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.96 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.95 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.94 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.92 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.91 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.89 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.86 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.84 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.84 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.77 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.73 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.73 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.67 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.66 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.64 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.6 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.53 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.44 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.44 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.38 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.38 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.36 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.33 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.29 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.24 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.17 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.17 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.08 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.05 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.01 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.96 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.95 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.81 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.76 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.71 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.65 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.61 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.58 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.49 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.49 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.47 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.47 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.37 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.37 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.36 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.35 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.33 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.31 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.3 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.29 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.18 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.04 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.03 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.98 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.95 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.94 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.79 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.74 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.71 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.63 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.62 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.59 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.56 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.52 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.29 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.23 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.22 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.15 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.13 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.09 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.05 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.99 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.87 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.75 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.68 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.64 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.64 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.56 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.55 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.5 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.46 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.35 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.32 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.23 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.16 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.89 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.86 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.76 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.75 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.59 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.53 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.39 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.32 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.15 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.15 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.37 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.25 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.09 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.99 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.97 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.69 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.64 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 89.38 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.31 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.11 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.98 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.94 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.41 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.74 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.71 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.4 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.37 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.96 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.95 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.22 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.92 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.51 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.4 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 83.88 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.74 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.54 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.05 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.76 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.83 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.63 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.01 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.01 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.4e-56 Score=434.78 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=199.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.
T Consensus 3 ~i~v~nl~k~y-----g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred cEEEEeEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhh
Confidence 48999999999 5678999999999999999999999999999999999999996 999999998642
Q ss_pred ---CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008669 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..++.+|||||++.++|.+||+||+.++...+ ..+.++.+++++++++.++|++..|++ +++|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~LSGGqkQ 146 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQ 146 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHH
T ss_pred hcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 11357999999999999999999999998765 456788889999999999999887774 5679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||+ +++.++||||++|++|++++.|+++
T Consensus 147 Rv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~ 225 (240)
T d1g2912 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (240)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 99999999995 7899999999999999999999999
Q ss_pred hHHH
Q 008669 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++.+
T Consensus 226 el~~ 229 (240)
T d1g2912 226 EVYD 229 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-56 Score=437.71 Aligned_cols=217 Identities=23% Similarity=0.369 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++||+++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.. ..
T Consensus 6 ~I~v~nlsk~y-----g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 77 (239)
T d1v43a3 6 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 77 (239)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCccc
Confidence 38999999999 5688999999999999999999999999999999999999996 9999999998642 24
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.+|||||++.+|+.+||+||+.|....+ ..++++.+++++++++.+||++..|+ ++++|||||||||+|||
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHH
T ss_pred ceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHh
Confidence 66999999999999999999999986654 46788888999999999999988877 45689999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|++|||+ +++.++||||++|++|++++.|+++++.+
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999976 499999999995 78999999999999999999999998753
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-56 Score=436.89 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=162.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++||+++| +++++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.. .++
T Consensus 1 Iev~nv~k~y-----g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhc
Confidence 6899999999 5678999999999999999999999999999999999999996 9999999987532 246
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.+|||||++.+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|++ +++|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGRT 144 (232)
T ss_dssp CEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHHHH
T ss_pred eeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999987654 345667788999999999999888875 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||++||++ +++.++|||+++|++|++++.|+++++.+
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999999999999999999965 699999999995 78999999999999999999999998864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6.5e-56 Score=433.91 Aligned_cols=219 Identities=25% Similarity=0.367 Sum_probs=198.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++||+++|.. +...+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++..
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC---CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhh
Confidence 4899999999942 3467999999999999999999999999999999999999996 999999998742
Q ss_pred --CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008669 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 125 --~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..++++|||||++.+||.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|.+ +++||||||||
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----p~~LSGGqkQR 148 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF-----PRELSGAQQQR 148 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHH
T ss_pred cchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCC-----hhhCCHHHHhH
Confidence 12357999999999999999999999987653 467788889999999999998888774 56799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+|||||+.+|++|||||||+|||+.++.++++.|+++.+ .|.|+|++|||+ +++.++||||++|++|++++.|++++
T Consensus 149 vaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~e 227 (242)
T d1oxxk2 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (242)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999966 599999999995 78999999999999999999999998
Q ss_pred HHH
Q 008669 282 AFE 284 (557)
Q Consensus 282 ~~~ 284 (557)
+.+
T Consensus 228 l~~ 230 (242)
T d1oxxk2 228 LYD 230 (242)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-55 Score=429.44 Aligned_cols=219 Identities=25% Similarity=0.378 Sum_probs=197.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
|+++||+++|..++ ...++|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 2 i~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhh
Confidence 78999999996432 2246899999999999999999999999999999999999986 99999999985321
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008669 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
++.+|||||++.+++.+||+||+.++..++ ..++++.++++.++|+.+||++..|.+ +++|||||||||
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LSGG~~QRv 149 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQRV 149 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCCHHHHHHH
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 246999999999999999999999987764 356677788999999999999887774 567999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+ .++..+||||++|++|++++.|+++++
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999775 99999999995 789999999999999999999999986
Q ss_pred H
Q 008669 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 229 ~ 229 (240)
T d3dhwc1 229 F 229 (240)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.8e-54 Score=419.39 Aligned_cols=217 Identities=26% Similarity=0.379 Sum_probs=191.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
|+++||+++|..++ ....+|+||||++++||+++|+|||||||||||++|+|+.+|+ +|+|+++|+++...
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhc
Confidence 78999999996432 2345899999999999999999999999999999999999986 99999999985321
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (557)
++.+|||+|++.++|.+||+||+.++...+.....+..+..+++.++++.++|.+ .++. ++.+|||||||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGGqkQ 152 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHHHHH
Confidence 2459999999999999999999999987765445677788889999999999976 3555 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||+|||||+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||++|||+ +.+ ++||||++|++|+++++|++
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999999976 499999999995 444 89999999999999999875
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.6e-55 Score=423.79 Aligned_cols=211 Identities=26% Similarity=0.408 Sum_probs=190.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---cc
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---FG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---~~ 128 (557)
|+++|||++| ++ .+|+||||++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++
T Consensus 2 i~v~nlsk~y-----~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKW-----KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEEC-----SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEe-----CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHh
Confidence 7899999998 22 4899999999999999999999999999999999999996 99999999986432 35
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008669 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.+|||||++.+||.+||+||+.|+...+.. .. ++++.++++.++|.+..|+.+ .+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAra 141 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhh
Confidence 799999999999999999999999876532 22 356889999999999888754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+++|++|||||||+|||+.++.++++.|+++.+ .|.|||++||++ .++.++||||++|++|++++.|+++++.
T Consensus 142 L~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999965 699999999995 7899999999999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.4e-53 Score=419.99 Aligned_cols=217 Identities=28% Similarity=0.377 Sum_probs=195.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++||++.| +++++|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 Lev~nl~k~y-----g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~ 74 (258)
T d1b0ua_ 3 LHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDG 74 (258)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTS
T ss_pred EEEEEEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccch
Confidence 8999999999 4678999999999999999999999999999999999999986 9999999987521
Q ss_pred ------------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 008669 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (557)
Q Consensus 126 ------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 192 (557)
.++++|||||++.+++.+||+||+.++.... ...+..+.++++.++++.++|.+. .++ ++
T Consensus 75 ~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~p 147 (258)
T d1b0ua_ 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK-----YP 147 (258)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS-----CG
T ss_pred hcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc-----Cc
Confidence 1246999999999999999999999874322 235677888899999999999764 344 45
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008669 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|||+ .++..+||||++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 67999999999999999999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred EEEEcCcchHHH
Q 008669 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
+++.|+++++..
T Consensus 227 iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 227 IEEEGDPEQVFG 238 (258)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEcCHHHHHh
Confidence 999999998854
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.3e-53 Score=413.86 Aligned_cols=217 Identities=29% Similarity=0.393 Sum_probs=200.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----c
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----F 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~ 127 (557)
|+++||+++| +++++|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++.... +
T Consensus 3 I~v~nl~k~y-----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 3 VVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHH
T ss_pred EEEEeEEEEE-----CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHH
Confidence 7899999999 5788999999999999999999999999999999999999996 99999999985432 3
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008669 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||||++.+++++||.||+.|...++ ..+..+.++.++++++.++|.+..+++++ +||||||||++|||
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIAR 146 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHH
T ss_pred hhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999999988775 34567778889999999999988888654 69999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008669 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
||+++|++|||||||+|||+.++.+++++|++++++|+|||++||++ +++..+||||++|++|++++.|+++++.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999999999999999999995 789999999999999999999999998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9e-53 Score=413.98 Aligned_cols=217 Identities=23% Similarity=0.349 Sum_probs=191.2
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 008669 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-- 126 (557)
.+.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 d~~Lev~~l~k~y-----g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPA 75 (240)
T ss_dssp SEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred ceEEEEeeEEEEE-----CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccH
Confidence 3579999999999 5678999999999999999999999999999999999999996 99999999986432
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHH
Q 008669 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerq 201 (557)
+..++|+||+..+|+.+||+||+.+....+. .....++.++++++.+ +|.+..++.+ .+|||||||
T Consensus 76 ~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Q 146 (240)
T d1ji0a_ 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHH
T ss_pred HHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHHHH
Confidence 2348999999999999999999988764432 2334445566777766 6777777755 469999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008669 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
||+|||||+++|++|||||||+|||+.++.++++.|++++++|+|||++||+. +++.++||||++|++|++++.|++++
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999998999999999995 78999999999999999999999988
Q ss_pred HH
Q 008669 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 226 l~ 227 (240)
T d1ji0a_ 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-52 Score=413.20 Aligned_cols=220 Identities=20% Similarity=0.298 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||+++| +++++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 4 iL~v~nlsk~y-----g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEEEEEEE-----CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHH
Confidence 48999999999 5678999999999999999999999999999999999999996 99999999986421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL----------PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (557)
...++|+||++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..|++++ +
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 150 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----E 150 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-----h
Confidence 2349999999999999999999998743221 1112344556788899999999988888664 6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008669 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||+. +++.++||||++|++|+++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999988999999999996 6899999999999999999
Q ss_pred EEcCcchHHH
Q 008669 275 YFGETSAAFE 284 (557)
Q Consensus 275 ~~G~~~~~~~ 284 (557)
+.|+++|...
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999987653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.5e-52 Score=403.41 Aligned_cols=196 Identities=28% Similarity=0.426 Sum_probs=178.3
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcccEEEEccCCCCCCCCCHHHHHH
Q 008669 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETIS 150 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~ 150 (557)
||||+++ +|+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.. .++.+|||||++.+||++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999996 9999999998532 3467999999999999999999999
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008669 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
|+.+ ..++.+.++++.++++.+||.+..+.+ +++|||||||||+|||||+++|++|||||||+|||+.++
T Consensus 93 ~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 93 YGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred hhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHH
Confidence 8742 345777788999999999999888774 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 231 FFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
..+++.|+++.+ .|.|||++||++ .++.++||||++|++|++++.|+++++.+
T Consensus 163 ~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 163 GVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 999999999976 499999999995 78999999999999999999999998853
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-51 Score=402.11 Aligned_cols=218 Identities=26% Similarity=0.436 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+|+||+++|+. ..+.+|+||||+|++||.+||+||||||||||+++|+|+++|+ +|+|.+||+++...
T Consensus 1 eI~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 74 (241)
T d2pmka1 1 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74 (241)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHH
T ss_pred CeEEEEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhh
Confidence 4899999999842 3467999999999999999999999999999999999999986 99999999986432
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH--HHHHHc-CCCccccccccCcccCCCCHHHHHH
Q 008669 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE--RTIIEM-GLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
++.++||+|++.+|+. ||+||+.++.. ..+.++.....+ .+.+.+ .+....++.+|. .+..||||||||
T Consensus 75 lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QR 147 (241)
T d2pmka1 75 LRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQR 147 (241)
T ss_dssp HHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHH
T ss_pred hhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHH
Confidence 3579999999998875 99999987532 122322221111 111111 345667888876 578899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008669 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+|||||+++|++||||||||+||+.++..+++.|+++.+ |+|+|++||++ +. .+.||||++|++|+++++|+++++
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~-~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL-ST-VKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSG-GG-GTTSSEEEEEETTEEEEEECHHHH
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCH-HH-HHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999864 89999999996 33 578999999999999999999988
Q ss_pred HH
Q 008669 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
..
T Consensus 225 l~ 226 (241)
T d2pmka1 225 LS 226 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-50 Score=401.12 Aligned_cols=219 Identities=29% Similarity=0.406 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.|+. ..++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 11 ~I~~~nvsf~Y~~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN--RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTT--STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEECCC--CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHH
Confidence 4999999999842 23457999999999999999999999999999999999999996 9999999998642
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.+++++||+|++.+|+. ||+||+.++.... ....+..+ ...+.+ .++.+..++.+++ .+..||||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i--~~l~~g~~~~i~~-~~~~LSGGqk 157 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDE-AGSQLSGGQR 157 (251)
T ss_dssp HHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHH--HTSTTGGGCBCCS-SCSSSCHHHH
T ss_pred HHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHH--HhccccchhhHhc-cCccCChhHc
Confidence 13679999999999875 9999999863221 12222111 112222 2566677888875 6778999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||+|||||+++|+|||||||||+||+.++.++++.|+++.+ .|+|+|++||++ + ..+.||||++|++|+++++|++
T Consensus 158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~-~~~~aDrI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-S-LVEQADHILFLEGGAIREGGTH 235 (251)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H-HHHTCSEEEEEETTEEEEEECH
T ss_pred eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999876 489999999995 4 4577999999999999999999
Q ss_pred chHHH
Q 008669 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
+++.+
T Consensus 236 ~eLl~ 240 (251)
T d1jj7a_ 236 QQLME 240 (251)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.6e-51 Score=402.96 Aligned_cols=213 Identities=27% Similarity=0.447 Sum_probs=180.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008669 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
|+++||+++|+ +.+.+|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++.. .
T Consensus 2 le~knvsf~Y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEECC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHH
Confidence 79999999883 3467999999999999999999999999999999999999996 9999999998532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHH
Q 008669 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGe 199 (557)
+++++||+|++.+|+. ||+||+.++... ..+..+ +.+.++.. .+.+..++.+|+ ++.+|||||
T Consensus 75 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGGq 144 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQ 144 (242)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHH
T ss_pred HhheEEEccccccCCc-chhhheeccccc----ccchhh----HHHHHHHHHhhhhhccCcccccccccC-CCCCCCHHH
Confidence 4679999999999987 999999765321 122322 22233332 234567788876 567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008669 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||||+.+|+|||||||||+||+.++..+++.|++++ +|+|+|++||++ +.+ ..||||++|++|+++++|++
T Consensus 145 kQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~~ 221 (242)
T d1mv5a_ 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999996 589999999996 444 56999999999999999999
Q ss_pred chHHH
Q 008669 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
+++.+
T Consensus 222 ~eLl~ 226 (242)
T d1mv5a_ 222 NELVA 226 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-49 Score=392.38 Aligned_cols=215 Identities=28% Similarity=0.399 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||+++|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||++....
T Consensus 13 ~I~~~nvsf~Y~~---~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEeCC---CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhh
Confidence 5999999998842 3456999999999999999999999999999999999999986 99999999986431
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 008669 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (557)
++.++||+|++.+|+. |+++|+.++.. ...+.++ +.+.++..+ +++..++.+++ ++.+||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGG 156 (253)
T d3b60a1 87 LRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGG 156 (253)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHH
T ss_pred hhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHH
Confidence 3569999999999876 99999987632 1223332 233333333 34567888876 67889999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|||||+|||||+.+|++||||||||+||+.++..+++.|+++.+ ++|+|++||++ +. .+.||+|++|++|+++++|+
T Consensus 157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~-~~~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL-ST-IEQADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG-GG-TTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-HH-HHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999964 89999999996 34 47899999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++++
T Consensus 234 ~~eLl~ 239 (253)
T d3b60a1 234 HSELLA 239 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.2e-50 Score=396.28 Aligned_cols=214 Identities=29% Similarity=0.381 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||+++|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++..
T Consensus 16 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 16 RIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHH
Confidence 4999999999842 3467999999999999999999999999999999999999986 9999999998643
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 008669 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++||+|++.+|+. ||+|||.++.. ..+.+ .+.+.++..+ +.+..|+.+|+ .+..||||
T Consensus 90 lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgG 158 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSD-TVKENILLGRP-----TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGG 158 (255)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHH
T ss_pred hhheeeeeeccccCCCC-CHHHHHhccCc-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHH
Confidence 13679999999998875 99999987632 12222 2334444444 45677888886 56789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ ++|+|++||++. . ...||||++|++|++++.|+
T Consensus 159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~G~iv~~G~ 235 (255)
T d2hyda1 159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIENGHIVETGT 235 (255)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999864 799999999964 3 57899999999999999999
Q ss_pred cchHHH
Q 008669 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++.+
T Consensus 236 ~~eLl~ 241 (255)
T d2hyda1 236 HRELIA 241 (255)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-45 Score=360.30 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=178.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008669 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
+.|+++|++. +.+|+||||+|++||++||+||||||||||+|+|+|+. ++ +|+|.++|++....
T Consensus 2 ~il~~~dv~~---------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 2 IVMQLQDVAE---------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEEECC---------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHH
T ss_pred eEEEEECccc---------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHH
Confidence 4588899853 34799999999999999999999999999999999976 44 89999999975332
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008669 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
....+|++|+.......++++++.+...- ....+.++++++.+++.+..++.+ +.|||||||||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~ 135 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVR 135 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHH
Confidence 13579999998766677999999876321 122356788999999998877754 569999999999
Q ss_pred HHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 205 IALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 205 ia~aL~~-------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||+|++ +|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++|||+++|++|++++.|
T Consensus 136 iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G 214 (231)
T d1l7vc_ 136 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASG 214 (231)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCS
T ss_pred HHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEC
Confidence 9999997 7799999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred CcchHH
Q 008669 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 215 ~~~ev~ 220 (231)
T d1l7vc_ 215 RREEVL 220 (231)
T ss_dssp BHHHHS
T ss_pred CHHHHh
Confidence 998874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-45 Score=371.26 Aligned_cols=196 Identities=23% Similarity=0.342 Sum_probs=162.4
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008669 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
+++||+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++| +++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g--------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG--------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS--------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC--------EEEEEeccccccCc-eeec
Confidence 467999999999999999999999999999999999999996 99999987 38999999999886 9999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 008669 148 TISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 224 (557)
|+.|+... .....+...+. ......+.+..++.+++ .+.+|||||||||+|||||+++|+||||||||++
T Consensus 116 ni~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVSY------DEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSCC------CHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred cccccccc------cchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 99876321 12211111111 11223456667777775 5677999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008669 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.++..+++.+.....+|+|+|++||++ + ..+.||||++|++|+++++|+++++..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~-~-~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM-E-HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH-H-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechH-H-HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999986544445689999999995 3 467899999999999999999998864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-43 Score=340.13 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=165.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008669 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|||+.| +++||+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||++....++.+
T Consensus 2 ~lev~~ls~~y------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGY------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEES------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEe------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHhcCcE
Confidence 48999999988 246999999999999999999999999999999999999996 999999999976656789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008669 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|+||+..++..+|++|++.+...++.. ...+ +.+.+.++.+++.+. +..+ .+||||||||++|||+|+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCccc-cccc-----CcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999998776532 2222 335667888887653 3333 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999877544555555553 357999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.61 E-value=2.7e-17 Score=151.21 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=99.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccC--C--CCCCCCCHHHHHHHHhhccCCCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD--D--NLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~--~--~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
++|+||||||||||+++|+|.+++. .|.+...|.+.....++.++..+. . ......+..+. .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KLV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SEE---
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhh------hhh---
Confidence 7899999999999999999999875 899998876532222222222111 0 00000000000 000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008669 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
...+. +. ....+|+|+++|.++++++..+|+++++|||... ......+.+.|.++
T Consensus 71 --------------~~~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 71 --------------GSYGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQI 125 (178)
T ss_dssp --------------TTEEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHH
T ss_pred --------------hhhhc----Cc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHH
Confidence 00000 00 1124799999999999999999999999998443 33445666666665
Q ss_pred Hh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008669 241 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 241 ~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+ .+.++|+++|+. ....++|++..+.+|+++.-+
T Consensus 126 l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 126 MHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred hccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 44 589999999995 356788999999999998644
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.1e-10 Score=112.42 Aligned_cols=77 Identities=31% Similarity=0.308 Sum_probs=64.7
Q ss_pred cCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 008669 192 LRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 267 (557)
...+|+|||+...++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||++||.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 456999999998877654 346789999999999999999999999999865 57899999997 46789999966
Q ss_pred --eeCC
Q 008669 268 --LSGG 271 (557)
Q Consensus 268 --L~~G 271 (557)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3.5e-09 Score=108.74 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008669 193 RGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+| .+.+.+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998877544 346789999999999999999999999999866667799999996 589999998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=2.8e-06 Score=80.16 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcC
Q 008669 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
|-+|+.-....+.+..++|+||+.+|=|+.....+... ++.+.+.+..++++||.. ++..+.
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTCC
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhhh
Confidence 33344333334456679999999999999887776544 466777788999999983 555543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=5e-06 Score=78.95 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 008669 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~ 254 (557)
-+.+..++|+||+.+|=|+.....+... ++.+..+ +..++++||..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 3455679999999999999999888654 6677654 56788888874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.65 E-value=0.00032 Score=67.00 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=27.6
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555444478999999999999999999888863
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=5.9e-06 Score=74.41 Aligned_cols=36 Identities=33% Similarity=0.308 Sum_probs=30.5
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.-+++.++.+.+| +++|+|||||||||+|++|.-.+
T Consensus 13 ~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 13 NGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cCEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888888876 99999999999999999997443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=6.4e-05 Score=70.38 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~ 118 (557)
+|+.++++|+||+|||||+|.|.|...-. .|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCccc
Confidence 58999999999999999999998865432 576653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=7.7e-05 Score=65.38 Aligned_cols=24 Identities=46% Similarity=0.564 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=7.8e-05 Score=67.09 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.14 E-value=0.00011 Score=64.64 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.|+++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.12 E-value=0.005 Score=56.03 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.9
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
-|+++ ++=+++|+++.|.|++|+|||||.--++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34443 3458999999999999999999975443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0022 Score=60.69 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 008669 208 EILMRPRLLFLDEPTS-----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (557)
Q Consensus 208 aL~~~p~llllDEPts-----gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 253 (557)
.-..+|+++++|--++ --|......+++.|+.+++ .|.+||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995543 1255666778888888776 58888888775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.00 E-value=0.0054 Score=56.59 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=81.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
+=+++|.++.|.|++|+|||||..-++-.... ....+.|+.-+ .+..+.......+.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~-----------------~~~~~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACA-----------------NKERAILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-----------------TTCCEEEEESS------SCHHHHHHHHHTTS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----------------hccccceeecc------CCHHHHHHHHHHcC
Confidence 34899999999999999999998877643211 01234455432 34555444443322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH-HHhCCCEEEEeCCCC---CCCHHHHHH
Q 008669 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-ILMRPRLLFLDEPTS---GLDSAAAFF 232 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a-L~~~p~llllDEPts---gLD~~~~~~ 232 (557)
.... +. ...+.....+. ........+. .-.|..+ --.+|++++.|--+. +.+......
T Consensus 78 ----~~~~-------~~-~~~~~~~~~~~-----~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 78 ----MDFE-------EM-ERQNLLKIVCA-----YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp ----CCHH-------HH-HHTTSEEECCC-----CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred ----CChH-------HH-hhcCceEEEEe-----ecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHH
Confidence 1111 11 11222111111 1111222221 1112222 224789999997544 345555555
Q ss_pred HHHHHHHHH-hCCCEEEEEeCCC---------chHHHhcCCeEEEee
Q 008669 233 VTQTLRCLS-RDGRTVIASIHQP---------SSEVFELFDRLYLLS 269 (557)
Q Consensus 233 i~~~L~~l~-~~g~tvi~~~H~~---------~~~i~~~~D~v~~L~ 269 (557)
.+..|.+++ +.+.+++++.|.. ...+..++|-++.|+
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 555555554 4689998888742 123456789898885
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.99 E-value=0.00011 Score=64.82 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
++++|+|++|||||||++.|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988876543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00018 Score=63.20 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=7.3e-05 Score=70.24 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~ 117 (557)
+|+.++++|+||+|||||+|.|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 57889999999999999999998865432 56665
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.83 E-value=0.00027 Score=61.99 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+|-++.|+|++||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999665
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.81 E-value=0.00029 Score=62.03 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00037 Score=64.16 Aligned_cols=27 Identities=44% Similarity=0.651 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.|.++.|+||||+|||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999976543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.68 E-value=0.00043 Score=59.44 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008669 83 TLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g 104 (557)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.66 E-value=0.00037 Score=60.96 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.+++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.64 E-value=0.00044 Score=69.57 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444556699999999999999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.62 E-value=0.00049 Score=60.25 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456779999999999999999998654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00038 Score=61.16 Aligned_cols=25 Identities=44% Similarity=0.601 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999988754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.55 E-value=0.00058 Score=59.36 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.48 E-value=0.00067 Score=59.70 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
.++++|.|++||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.45 E-value=0.00059 Score=61.53 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.44 E-value=0.00064 Score=59.25 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00068 Score=60.47 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.00058 Score=60.97 Aligned_cols=26 Identities=42% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+|-++.|+|++||||||+-+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998655
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00088 Score=57.40 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999765
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.26 E-value=0.00095 Score=61.77 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.24 E-value=0.001 Score=59.82 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.24 E-value=0.00065 Score=60.64 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.21 E-value=0.0012 Score=58.15 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0014 Score=58.66 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999999999888754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.18 E-value=0.00091 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0013 Score=58.89 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
...+.|+||||+|||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999988543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0012 Score=59.43 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||||||||||++.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0014 Score=57.65 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0013 Score=59.42 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.0015 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+||+|.+|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0014 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0017 Score=58.48 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0017 Score=57.39 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.95 E-value=0.0015 Score=55.87 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0011 Score=58.71 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+||+|.+|+|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0017 Score=58.59 Aligned_cols=22 Identities=55% Similarity=0.747 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||||||||||++.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.91 E-value=0.0012 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.89 E-value=0.0016 Score=58.59 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.86 E-value=0.0017 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998764
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.002 Score=58.75 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~ 140 (557)
++||-|++|||||||.+.|+-.+... + .......+..+++|+.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~--------~~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E--------VDYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G--------SCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh----c--------cccCCCceEEEecccccc
Confidence 68999999999999999998665321 0 111123466788887643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.84 E-value=0.2 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008669 82 GTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.79 E-value=0.0021 Score=56.20 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0024 Score=55.12 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.76 E-value=0.0025 Score=56.95 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|=-+.|+||+||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667789999999999999999854
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0024 Score=57.13 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.73 E-value=0.014 Score=58.64 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008669 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
++..+|=.||++++..|.. |+.++...+ +.+..|+.|+.+.|-.+ +....+|+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 3455667899999999986 566655544 45678999999999853 34555553
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.67 E-value=0.0024 Score=56.29 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.66 E-value=0.0025 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999997764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.64 E-value=0.0022 Score=57.31 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.60 E-value=0.0025 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+|++||||||+-+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0013 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.57 E-value=0.0025 Score=59.71 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
...+.+.||+|||||||.+.|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0031 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999885
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.53 E-value=0.0028 Score=55.01 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.44 E-value=0.0035 Score=56.30 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++.++|.+|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.0034 Score=54.88 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+.|+|++||||||+-+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999997653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.38 E-value=0.002 Score=63.41 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~ 109 (557)
+.|.-+.|.|+.||||||||++|.+..++.
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 345558999999999999999999988764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.38 E-value=0.0038 Score=55.32 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.36 E-value=0.0038 Score=56.91 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++|-||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999655
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.33 E-value=0.0012 Score=57.09 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|.+|+|||||+|.|.|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.33 E-value=0.0035 Score=55.66 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+||+|...||||||+|.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0042 Score=56.28 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++|.||+||||||+-+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999997653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.0038 Score=56.44 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.0044 Score=54.82 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||+||||||+-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.21 E-value=0.0039 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0051 Score=59.83 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=33.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (557)
++||-|++||||||+.+.|..++... .....+..+++|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh---------------cCCCceEEEeeeeeECCc
Confidence 89999999999999999998765421 001346788888877653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.0047 Score=56.58 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
=+++|+++.|.||+|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999987764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.17 E-value=0.0039 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0034 Score=61.70 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..-.+||.||+|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0044 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.08 E-value=0.0039 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998755
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.05 E-value=0.006 Score=55.83 Aligned_cols=42 Identities=33% Similarity=0.364 Sum_probs=29.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
++|-++-+.|.||||||||.+.|.-.+.... ..-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 5788999999999999999999975432100 01245666654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.01 E-value=0.0049 Score=54.96 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0058 Score=54.12 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.95 E-value=0.0057 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.95 E-value=0.0054 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0047 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.76 E-value=0.0058 Score=59.88 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
..-.++|.||+|||||||++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.71 E-value=0.0086 Score=55.22 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999977554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.65 E-value=0.009 Score=54.52 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
+-+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.0084 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..+.|.||+|+||||+.++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.61 E-value=0.0077 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.|.||+|+|||||.++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.58 E-value=0.0076 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.0071 Score=61.02 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.55 E-value=0.0079 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.54 E-value=0.0067 Score=53.05 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.49 E-value=0.0084 Score=55.68 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+.++.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0087 Score=54.66 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|.+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998755
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.009 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+|.+++|-|+.||||||+++.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987553
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.47 E-value=0.0085 Score=55.21 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+.+.||+|+||||+.++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 78999999999999999997654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0077 Score=52.32 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.37 E-value=0.011 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.+++++||+|+||||.+-=|+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876676543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.37 E-value=0.017 Score=51.23 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=25.3
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
.||..-..+ .|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 455444444 578899999999999999887764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 78 YAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
=+++|+++.|.||+|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999887763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.35 E-value=0.0094 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.33 E-value=0.0091 Score=55.11 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+.||+|+|||||.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.0094 Score=52.27 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.31 E-value=0.0095 Score=51.58 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.012 Score=53.90 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999877653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.29 E-value=0.0086 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
|+.-+.++||+|+|||.|.|+|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.18 E-value=0.011 Score=53.48 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~ 103 (557)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.013 Score=51.84 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999854
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.013 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++.+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.012 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.|.||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.012 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999987653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.011 Score=51.30 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.011 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|++|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.94 E-value=0.024 Score=50.31 Aligned_cols=33 Identities=30% Similarity=0.235 Sum_probs=26.5
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
.||..-..+ .|.-+.|.|+||+|||||.-.|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456555666 688899999999999999987753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.015 Score=50.78 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.014 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.012 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.014 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.79 E-value=0.013 Score=54.89 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.-+.+.||+|+|||+|.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 347899999999999999998653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.012 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.014 Score=51.42 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.71 E-value=0.0077 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999997654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.015 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.017 Score=54.38 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+..-+.+.||+|+|||+|.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 33457899999999999999999754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.63 E-value=0.018 Score=53.28 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
...+.|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 357889999999999999999977643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.62 E-value=0.016 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|.+|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988743
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.60 E-value=0.02 Score=52.17 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
...+++++||+|+||||.+-=|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999888787654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.018 Score=52.23 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.021 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.014 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.016 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|.+|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.52 E-value=0.0099 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998854
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.40 E-value=0.018 Score=49.89 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.29 E-value=0.018 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+.||+|+|||+|.++|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.02 Score=49.60 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=0.017 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++..-+.|.||+|+|||+|.++|++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344558899999999999999999865
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.017 Score=51.56 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.021 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+.||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.018 Score=50.20 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.13 E-value=0.027 Score=49.00 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+||.++++-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.018 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999988754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.09 E-value=0.026 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+-.+++++||+|+||||.+-=|+-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999998876666543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.05 E-value=0.024 Score=50.69 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.99 E-value=0.014 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.96 E-value=0.015 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-+.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=0.023 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999977653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.023 Score=50.07 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.021 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++|+|.+|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.024 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.025 Score=49.06 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++++|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998843
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.026 Score=51.33 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008669 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 213 p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+++++||. -.+.......+++.|.+.. ....++++++++
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~ 139 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYT-KNTRFCVLANYA 139 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcc-cceeeccccCcH
Confidence 469999997 4677777777777776653 234455555554
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.68 E-value=0.026 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+.+.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.022 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998877777554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.64 E-value=0.028 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
...+++++||+|+||||.+-=|+-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999998877676443
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.64 E-value=0.019 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.027 Score=48.88 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.029 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.016 Score=50.52 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.56 E-value=0.034 Score=49.61 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.028 Score=48.83 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=0.024 Score=52.20 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
+.+++++||.-. |.......+.+.+.+.. .+..+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999964 77777777777665432 3455788888864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.46 E-value=0.029 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008669 84 LTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g 104 (557)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.35 E-value=0.016 Score=56.53 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.-+.|.||+|+|||||++.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999998865
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.031 Score=49.40 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 008669 85 TALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~ 103 (557)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999984
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.23 E-value=0.053 Score=47.62 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=25.0
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
-||..-. .-.|.-+.|.|+||+|||||.-.+..
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3555444 34588999999999999999877653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.033 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-++++|.+|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.036 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.048 Score=51.44 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+=+++|.++-|.||+|+|||||.-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 67899999999999999999997666643
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.035 Score=48.94 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.036 Score=53.00 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999853
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.76 E-value=0.035 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+||+|-+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.034 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=27.4
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.+|+.++--| -+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 4666665433 489999999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.59 E-value=0.038 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.53 E-value=0.042 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~ 103 (557)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.39 E-value=0.039 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
.++|+|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.04 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.32 E-value=0.038 Score=56.20 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
=+.++||+|+|||-|.+.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999774
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.15 E-value=0.041 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
-+||+|-+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.15 E-value=0.046 Score=47.95 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.063 Score=51.91 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
|...+.++||+|+|||.|.+.|+..+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44468899999999999999999764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.37 E-value=0.062 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008669 85 TALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g 104 (557)
++|+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.25 E-value=0.078 Score=48.48 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008669 83 TLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g 104 (557)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.09 E-value=0.077 Score=50.32 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~ 103 (557)
-++|+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999994
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.99 E-value=0.063 Score=53.02 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
+++..+.+.||+|+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788999999999999999999998763
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.97 E-value=0.067 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+.++|.+|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.69 E-value=0.074 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+||+|-+-+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.64 E-value=0.097 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
-++|+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.38 E-value=0.086 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
+.++|..|+|||||++-+..-..|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCC
Confidence 689999999999999988654334
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.31 E-value=0.078 Score=50.04 Aligned_cols=20 Identities=55% Similarity=0.760 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008669 84 LTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~ 103 (557)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999994
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.069 Score=48.84 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008669 84 LTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.099 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 008669 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999987654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.94 E-value=0.1 Score=50.46 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=23.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
...++| ++.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444444 66778999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.57 E-value=0.11 Score=49.01 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
+=++.|.++-|.||+|+|||||+-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 468999999999999999999965554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.41 E-value=0.13 Score=48.54 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+=++.|.++-|-||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 56899999999999999999999887754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.74 E-value=0.15 Score=48.09 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008669 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g 104 (557)
+.+.+|+..+|.|++|+|||||+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 4688999999999999999999777763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.71 E-value=0.13 Score=46.58 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=38.1
Q ss_pred HhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 210 LMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 210 ~~~p~llllDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+.+.+++++|+--.= =+...+..+.+++..+.+.|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 557899999987442 35778888999999988889999999988654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.88 E-value=0.13 Score=51.15 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.6
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 008669 83 TLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~ 103 (557)
.-+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 358999999999999987544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.40 E-value=0.17 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008669 85 TALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~ 105 (557)
+||+|.-.+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=0.18 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
-+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48889999999999999998754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=0.19 Score=46.04 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008669 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 213 p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
.+++++||.=. |+...+..+++.+.+.. .+..+|++++++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 46999999954 77777777766665421 35678888888643
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.95 E-value=0.19 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
-..|+||+|.|||+++.-++.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999997653
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.22 E-value=0.23 Score=44.42 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008669 85 TALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
..|+||+|.|||++..-|+.++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999999765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.92 E-value=0.23 Score=47.73 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 34467899999999999999999765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.51 E-value=0.2 Score=48.02 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=17.4
Q ss_pred eCCeEEEEECCCCCcHHHHH
Q 008669 80 EPGTLTALMGPSGSGKSTLL 99 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl 99 (557)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35889999999999999964
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.40 E-value=0.2 Score=46.93 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=14.6
Q ss_pred EEEEECCCCCcHHHH-HHHH
Q 008669 84 LTALMGPSGSGKSTL-LDAL 102 (557)
Q Consensus 84 ~~~ilG~sGaGKSTL-l~~L 102 (557)
-+.|.|+.||||||. +..+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHH
Confidence 367999999999975 4443
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=83.88 E-value=0.47 Score=40.72 Aligned_cols=66 Identities=21% Similarity=0.153 Sum_probs=51.0
Q ss_pred HHHHHHHh--CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008669 204 SIALEILM--RPRLLFLDEPTSGL--DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 204 ~ia~aL~~--~p~llllDEPtsgL--D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
..|+..+. +.++++|||-...+ +-....+++++|++ +.++.-+|+|-+++..++.+.+|.|.-|+.
T Consensus 84 ~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 84 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 33444433 47999999998754 44567788888865 346789999999999999999999998864
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.74 E-value=0.18 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=17.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHH
Q 008669 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL 99 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl 99 (557)
+.++++. .| -+.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 4466653 34 4779999999999754
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.54 E-value=0.2 Score=48.05 Aligned_cols=18 Identities=44% Similarity=0.826 Sum_probs=16.5
Q ss_pred CCeEEEEECCCCCcHHHH
Q 008669 81 PGTLTALMGPSGSGKSTL 98 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTL 98 (557)
.|++..+.|.||+|||||
T Consensus 13 ~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp TCCEEEEEECTTSCHHHH
T ss_pred CCCEEEEEccCCCCcccc
Confidence 478999999999999996
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.05 E-value=0.29 Score=48.05 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=21.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008669 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~ 106 (557)
+++. +.++||+|+|||-|.|.|+...
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 3443 6778999999999999999765
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.76 E-value=0.29 Score=46.94 Aligned_cols=19 Identities=47% Similarity=0.784 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 008669 81 PGTLTALMGPSGSGKSTLL 99 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl 99 (557)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999986
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.83 E-value=0.36 Score=43.69 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 008669 85 TALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 85 ~~ilG~sGaGKSTLl~~L~ 103 (557)
++|+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999884
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.63 E-value=0.45 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.5
Q ss_pred CeEEEEECCCCCcHHHHHHH
Q 008669 82 GTLTALMGPSGSGKSTLLDA 101 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~ 101 (557)
+.++.|.||.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 67999999999999998743
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.01 E-value=0.56 Score=39.31 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 008669 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (557)
++++++.||-== ++ ..+.+.+..+.+.|++|++.--+
T Consensus 79 ~~dvI~IDE~QF-f~----d~i~~~~~~~~~~g~~Viv~GLd 115 (139)
T d2b8ta1 79 ETKVIGIDEVQF-FD----DRICEVANILAENGFVVIISGLD 115 (139)
T ss_dssp TCCEEEECSGGG-SC----THHHHHHHHHHHTTCEEEEECCS
T ss_pred CcCEEEechhhh-cc----hhHHHHHHHHHhcCceEEEEEec
Confidence 688999999722 12 23556666677789999999866
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| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.01 E-value=0.48 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 008669 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 3567799999999999999987654
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