BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008670
(557 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 445 LDIDNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCS 504
+D D M+YEEL+ L E +GT S L+ E +++ L T Y+ + S +C
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQE-LIETLPTKKYKFGSI-----FSRKRAGERCV 198
Query: 505 ICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPS 552
ICQ +Y +GE L C+H YH CI +WL + CP+C + PS
Sbjct: 199 ICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVFGEPS 246
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 451 SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPA-PLDVALSCSGNND-------DVK 502
SYEELL LE+R+G V+ I + Y+ P D G D D K
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQD----SKGKKDEGEESDTDEK 294
Query: 503 CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549
C+IC GE+V RL C H +H LC+ QWL ++ CPIC+ E+
Sbjct: 295 CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 341
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 451 SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPA-PLDVALSCSGNND-------DVK 502
SYEELL LE+R+G V+ I + Y+ P D G D D K
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQD----GKGKKDEGEESDTDEK 293
Query: 503 CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549
C+IC GE+V RL C H +H LC+ QWL ++ CPIC+ E+
Sbjct: 294 CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 431 LNGLSFHDQHRDMRLDIDNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV 490
L+G SF R ++EEL+ LEER+G V+ + I +C Y+ L
Sbjct: 867 LDGTSFRGPFRG--------NFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHC 918
Query: 491 ---ALSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPA 547
+ + + KC+IC GE+V RL C H +H +C+ QWL CPIC+
Sbjct: 919 KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
Query: 548 ES 549
E+
Sbjct: 979 EA 980
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 431 LNGLSFHDQHRDMRLDIDNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV 490
L+G SF R ++EEL+ LEER+G V+ + I +C Y+ D
Sbjct: 867 LDGTSFRGPFRG--------NFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDW 918
Query: 491 ----ALSC-------SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNW 539
L C + + + KC+IC GE+V RL C H +H +C+ QWL
Sbjct: 919 FSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK 978
Query: 540 CPICKAPAES 549
CPIC+ E+
Sbjct: 979 CPICRVDIEA 988
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 431 LNGLSFHDQHRDMRLDIDNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV 490
L+G SF R ++EEL+ LEER+G V+ + I +C Y+ D
Sbjct: 862 LDGASFRGPFRG--------NFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDW 913
Query: 491 ----ALSC-------SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNW 539
L C + + + KC+IC GE+V RL C H +H +C+ QWL
Sbjct: 914 FSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK 973
Query: 540 CPICKAPAES 549
CPIC+ E+
Sbjct: 974 CPICRVDIEA 983
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 444 RLDIDNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKC 503
+D D +SYEELLAL + +GT S L+ + I L + Y+ + +G N+ C
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTI-ASLPSKRYKEGD-----NQNGTNE--SC 288
Query: 504 SICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSSPS 555
IC+ +Y E++ L C+H YH CI WL++ CP+C A ++ S S
Sbjct: 289 VICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTSGQS 340
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 452 YEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV-----------ALSCSGNNDD 500
+EEL+ LEER+G V+ + I +C Y+ D + + +
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKA 545
KC+IC GE+V RL C H +H +C+ QWL CPIC+
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 944
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 452 YEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV-----------ALSCSGNNDD 500
+EEL+ LEER+G V+ + I +C Y+ D + +
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKA 545
KC+IC GE+V RL C H +H +C+ QWL CPIC+
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 957
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 452 YEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV-----------ALSCSGNNDD 500
+EEL+ LEER+G V+ + I +C Y+ D + + +
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKA 545
KC+IC GE+V RL C H +H +C+ QWL CPIC+
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 949
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 489 DVALSCSGNNDDVK-CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++A+ G ND +K CS+C EY G ++ +L C H YHV CI +WL + CPIC+
Sbjct: 531 NLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 489 DVALSCSGNNDDVK-CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++A+ G ND +K CS+C EY G ++ +L C H YHV CI +WL + CPIC+
Sbjct: 555 NLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 452 YEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDV-----------ALSCSGNNDD 500
+EEL+ LEER+G V+ + I +C Y+ D + +
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKA 545
KC+IC GE+V RL C H +H +C+ QWL CPIC+
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 913
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 496 GNNDDVK-CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
G ND +K CS+C EY G ++ +L C H YHV CI +WL + CPIC+
Sbjct: 577 GENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 496 GNNDDVK-CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
G ND +K CS+C EY G ++ +L C H YH+ CI +WL + CPIC+
Sbjct: 695 GENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 496 GNNDDVK-CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
G ND +K CS+C EY G ++ +L C H YH+ CI +WL + CPIC+
Sbjct: 560 GENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549
G D++ CS+C E+ VGE V L C H++H CI WLR CP+CK A S
Sbjct: 204 GTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHS 257
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 32/207 (15%)
Query: 353 SIRPSSYSRPGSSGGGLRGLMPGSPSDVGGITGSVINRDNFARYNIDGIAEVLLALERIE 412
+I ++ G+ G L G + G ++ G I G+ I + A ++I EV + +
Sbjct: 49 AILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSI----EVFESSLDLW 104
Query: 413 QDEELSYEQLLVLETNL--LLNGLSFHDQHRDMRLDIDNMSYEELLALEERMGTVSTALT 470
+ +E + L L + LL+G RL + + L A++ +MG V TA
Sbjct: 105 KSDESGFGCFLYLIDVIVSLLSG----------RLVRERIGPAMLSAVQSQMGAVDTAFD 154
Query: 471 DEAIL------KCLKTSIYQPAPLDVALSCSGNNDDVK------CSICQEEYVVGEEVGR 518
D L K L + + P ++ +GNN+ CS+C +++ +GE V
Sbjct: 155 DHTSLFDTGGSKGLTGDLVEKIP---KMTITGNNNTDASENTDSCSVCLQDFQLGETVRS 211
Query: 519 L-HCQHRYHVLCIQQWLRLTNWCPICK 544
L HC H +H+ CI WL CP+C+
Sbjct: 212 LPHCHHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 458 LEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVG 517
+E+ G + A E ++ +K Q P ++ +++ +C+IC E + + ++V
Sbjct: 360 MEQAQGHNAPAPAPEDVIAKMKV---QKPPKELI------DEEGECTICMEMFKINDDVI 410
Query: 518 RLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548
+L C+H +H CI+ WLR+ C IC+AP +
Sbjct: 411 QLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 43/204 (21%)
Query: 359 YSRPGSSGGGLRGLMPGSPSDVGGITGSVINRDNFARYNIDGIAEVLLALERIEQDEELS 418
++ G+ G L G + G ++ G I G+ + + A ++I+ LL + Q +E
Sbjct: 40 FALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLL----LWQSDESG 95
Query: 419 YEQLLVLETNL--LLNGLSFHDQHRDMRLDIDNMSYEELLALEERMGTV------STALT 470
LL L + LL+G RL + + L A++ +MG V T +
Sbjct: 96 IGCLLYLIDVIASLLSG----------RLVRERIGPAMLSAVQSQMGAVESQFQDHTDIF 145
Query: 471 DEAILKCL---------KTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVGRL-H 520
D AI K L K I +P + V CS+C +++ VGE V L H
Sbjct: 146 DTAISKGLTGDSLNRIPKVRITDTSP-----------EIVSCSVCLQDFQVGETVRSLPH 194
Query: 521 CQHRYHVLCIQQWLRLTNWCPICK 544
C H +H+ CI +WLR CP+C+
Sbjct: 195 CHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 468 ALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHV 527
LT E I L T Y+ +D L CS+C +YV G ++ +L C H +H+
Sbjct: 605 GLTKEQI-DNLSTRHYEHNSIDSELG-------KICSVCISDYVTGNKLRQLPCMHEFHI 656
Query: 528 LCIQQWLRLTNWCPICKAPA 547
CI +WL CPIC+ P
Sbjct: 657 HCIDRWLSENCTCPICRQPV 676
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 443 MRLDIDNM---SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNND 499
+ LD+D++ +YE LL L ER+G +A ++ L + + P S ++
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPD--------SHQSE 351
Query: 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551
C +C ++ V + + L C H +H C+ +WL+ CPIC+A A P
Sbjct: 352 QTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVP 403
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 443 MRLDIDNM---SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNND 499
+ LD+D++ +YE LL L ER+G +A ++ L + + P S ++
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPD--------SHQSE 294
Query: 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551
C +C ++ V + + L C H +H C+ +WL+ CPIC+A A P
Sbjct: 295 QTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVP 346
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 443 MRLDIDNM---SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNND 499
+ LD+D++ +YE LL L ER+G +A ++ L + + P S ++
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPD--------SHQSE 376
Query: 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551
C +C ++ + + L C H +H C+ +WL+ CPIC+A A P
Sbjct: 377 QTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVP 428
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+E+Y V EEV +L C H +H CI WL L + CP+C+
Sbjct: 226 LECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 269
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 503 CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPA 547
CS+C +YV G ++ +L C H +H+ CI +WL CP+C+ P
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPV 658
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
N ++C +C+E+Y V E+V +L C H +H CI WL L + CP+C+
Sbjct: 224 NTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCR 270
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 451 SYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEY 510
++EEL ++ + G S LT + + K K I LD SGN D CS+C +++
Sbjct: 147 TFEELSSIFDTGG--SKGLTGDLVDKIPKIKITGKNNLDA----SGNKD--SCSVCLQDF 198
Query: 511 VVGEEVGRL-HCQHRYHVLCIQQWLRLTNWCPICK 544
+GE V L HC H +H+ CI WL CP+C+
Sbjct: 199 QLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 448 DNMSYEELLALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQ 507
DN YE+LLAL +G + A + +K S A D A S + C IC
Sbjct: 718 DNPMYEDLLALTTYLGPAKKPV---ASHEDVKRSGGLFAYFDDASLSSAD----SCLICL 770
Query: 508 EEYVVGEEVGRLH-CQHRYHVLCIQQWLRL-TNWCPICKA 545
E Y G+ +L C+H +H CI QWL N CP+C+A
Sbjct: 771 ETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+E+Y VGE V +L C H +H CI WL + CP+C+
Sbjct: 226 LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+E+Y VGE V +L C H +H CI WL + CP+C+
Sbjct: 225 LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKA 545
+D +C IC EE+ +G EV L C H +HV CI QWLRL CP C+
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRC 277
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
+C++C +++ G E ++ C+H YH C+ WL L N CP+C+
Sbjct: 223 QCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR 265
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
+C++C +E+ G +V ++ C+H +H C+ WL L N CP+C+
Sbjct: 215 QCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+E+Y VGE V +L C H +H CI WL + CP+C+
Sbjct: 226 LECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 496 GNNDDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLRLTNWCPICK-APAESAPS 552
G + CSIC EY+ EE+ R+ C+H +HV C+ WL+L CP+C+ +P + S
Sbjct: 129 GEGRETTCSICLCEYM-EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQS 187
Query: 553 SPSSS 557
+P S+
Sbjct: 188 TPQST 192
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+E+Y +GE V +L C H +H CI WL + CP+C+
Sbjct: 229 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 457 ALEERMGTVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEV 516
AL+ V+T L DE+I++ Y+ L + GNNDD+ C IC EY E V
Sbjct: 280 ALQPNEVIVTTGL-DESIIE-----SYKKTELGESRRLPGNNDDIVCPICLSEYASKETV 333
Query: 517 GRL-HCQHRYHVLCIQQWLRLTNWCPICK---APAESA 550
+ C H +H CI WL++ CP+C+ +PA A
Sbjct: 334 RCIPECDHCFHSECIDVWLKIHGSCPLCRNSPSPARQA 371
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 466 STALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVGRL--HCQH 523
STA T + L ++ + P+ S + D ++C++C E+ E GR+ +CQH
Sbjct: 83 STAATSVVASRGLDPNVIKSLPV-FTFSDETHKDPIECAVCLSEFE-ESETGRVLPNCQH 140
Query: 524 RYHVLCIQQWLRLTNWCPICKAPAES 549
+HV CI W + CP+C++ ES
Sbjct: 141 TFHVDCIDMWFHSHSTCPLCRSLVES 166
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 503 CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSSPSSS 557
C++C E++ +E+G L CQH +H C+ +WL + CP+C P + P+ S S
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPI-AGPTETSQS 146
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESAP 551
G+ DV C+IC +EY G+++ L C H YH C+ WL T CPICK P P
Sbjct: 224 GDQYDV-CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGP 279
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
+ +C IC+E V+G+++ L C+H +H C++ WL N CPIC+
Sbjct: 227 EAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 271
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++C +C+++Y +GE V +L C H +H CI WL + CP+C+
Sbjct: 227 LECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 445 LDIDNMSYEELLALEERMG-TVSTALTDEAILKCL------------KTSIYQPAPLDVA 491
+D ++Y +ALEER+ + TAL A L+ L K SI + V
Sbjct: 465 VDPQFLTY---MALEERLAQAMETAL---AHLESLAVDVEVANPPASKESIDALPEILVT 518
Query: 492 LSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++ C IC EYV GE L C H +H C+ WL+ + CP+C+
Sbjct: 519 EDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 571
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 503 CSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSSPSSS 557
C++C E++ +E+G L CQH +H C+ +WL + CP+C P S PS + +
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAS-PSEATQN 146
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
+D +C IC EY G E+ L C H +H CI +WL + + CP+CK
Sbjct: 334 EDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCK 379
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 445 LDIDNMSYEELLALEERMG-TVSTALTDEAILKCL------------KTSIYQPAPLDVA 491
+D ++Y +ALEER+ + TAL A L+ L K SI + V
Sbjct: 530 VDPQFLTY---MALEERLAQAMETAL---AHLESLAVDVEVANPPASKESIDALPEILVT 583
Query: 492 LSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
++ C IC EYV GE L C H +H C+ WL+ + CP+C+
Sbjct: 584 EDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 636
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549
S D++CS+C+E G++ L C+H +H CI WL+ TN CP+C+ E+
Sbjct: 62 SDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELET 116
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESAP 551
G+ DV C+IC +EY G+++ L C H YH C+ WL T CPICK P P
Sbjct: 224 GDEYDV-CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGP 279
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544
SG+ D C+IC E+Y+ GEE+ + C HR+H C+ WL + CP C+
Sbjct: 284 SGSTSD--CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,409,120
Number of Sequences: 539616
Number of extensions: 8089268
Number of successful extensions: 41119
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 927
Number of HSP's that attempted gapping in prelim test: 29928
Number of HSP's gapped (non-prelim): 5837
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)