Query 008670
Match_columns 557
No_of_seqs 208 out of 1691
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 3.2E-16 1.1E-20 132.5 7.8 78 464-549 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.8E-15 6.3E-20 122.7 5.5 68 476-551 7-74 (75)
3 2ep4_A Ring finger protein 24; 99.5 1.1E-14 3.6E-19 117.5 6.6 59 495-553 10-68 (74)
4 2kiz_A E3 ubiquitin-protein li 99.5 1.3E-14 4.4E-19 115.5 6.5 59 495-553 9-67 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.5 1.2E-14 4.2E-19 110.6 4.1 51 498-548 3-54 (55)
6 2ect_A Ring finger protein 126 99.5 2.3E-14 7.9E-19 116.6 5.0 58 496-553 11-68 (78)
7 1v87_A Deltex protein 2; ring- 99.4 2.2E-13 7.4E-18 118.4 7.8 55 499-553 24-98 (114)
8 2ecm_A Ring finger and CHY zin 99.4 1.4E-13 4.9E-18 104.5 5.1 51 498-548 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.4 1.3E-13 4.3E-18 114.5 4.3 53 498-550 13-77 (81)
10 2ea6_A Ring finger protein 4; 99.4 3E-13 1E-17 106.6 5.1 55 495-549 10-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.4 3.5E-13 1.2E-17 107.1 4.8 56 497-552 7-66 (71)
12 2xeu_A Ring finger protein 4; 99.3 6.1E-13 2.1E-17 103.3 4.3 53 499-551 2-58 (64)
13 2d8s_A Cellular modulator of i 99.3 9.6E-13 3.3E-17 110.1 5.3 59 496-555 11-76 (80)
14 3dpl_R Ring-box protein 1; ubi 99.3 1.2E-12 4E-17 115.0 5.1 52 497-548 34-100 (106)
15 2d8t_A Dactylidin, ring finger 99.3 7.5E-13 2.6E-17 106.3 1.7 53 496-551 11-63 (71)
16 2ecn_A Ring finger protein 141 99.3 9.2E-13 3.2E-17 105.0 1.9 53 496-552 11-63 (70)
17 2ct2_A Tripartite motif protei 99.3 4.2E-12 1.4E-16 104.7 5.9 56 495-550 10-69 (88)
18 2djb_A Polycomb group ring fin 99.3 4.6E-12 1.6E-16 101.9 5.7 57 495-553 10-66 (72)
19 1chc_A Equine herpes virus-1 r 99.3 2.7E-12 9.3E-17 101.5 4.1 49 499-549 4-52 (68)
20 2ysl_A Tripartite motif-contai 99.2 1.4E-11 4.9E-16 98.5 5.4 54 495-551 15-71 (73)
21 2csy_A Zinc finger protein 183 99.2 1.5E-11 5.2E-16 100.9 5.2 50 496-548 11-60 (81)
22 4ayc_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 113.3 3.1 48 500-550 53-100 (138)
23 2yur_A Retinoblastoma-binding 99.2 1.9E-11 6.3E-16 99.2 5.4 55 495-552 10-67 (74)
24 4a0k_B E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 114.4 0.6 53 497-549 45-112 (117)
25 2ecy_A TNF receptor-associated 99.2 2.3E-11 7.8E-16 96.1 5.1 53 495-550 10-63 (66)
26 4ap4_A E3 ubiquitin ligase RNF 99.1 2.3E-11 7.9E-16 106.5 4.4 54 498-551 5-62 (133)
27 2ecw_A Tripartite motif-contai 99.1 5.5E-11 1.9E-15 96.8 5.6 53 496-551 15-73 (85)
28 2ecv_A Tripartite motif-contai 99.1 6.7E-11 2.3E-15 96.3 5.4 53 496-551 15-73 (85)
29 1t1h_A Gspef-atpub14, armadill 99.1 6.3E-11 2.2E-15 96.2 5.2 53 496-551 4-57 (78)
30 2ysj_A Tripartite motif-contai 99.1 9.1E-11 3.1E-15 91.7 5.1 46 495-543 15-63 (63)
31 2ct0_A Non-SMC element 1 homol 99.1 8.4E-11 2.9E-15 97.5 4.9 54 497-552 12-67 (74)
32 2egp_A Tripartite motif-contai 99.1 3E-11 1E-15 97.8 2.0 53 495-550 7-66 (79)
33 3lrq_A E3 ubiquitin-protein li 99.1 4.3E-11 1.5E-15 102.6 2.9 50 499-550 21-71 (100)
34 4ap4_A E3 ubiquitin ligase RNF 99.0 7E-11 2.4E-15 103.4 3.5 55 497-551 69-127 (133)
35 2ckl_A Polycomb group ring fin 99.0 9.1E-11 3.1E-15 101.3 4.0 51 498-550 13-63 (108)
36 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 103.1 4.6 47 500-549 52-99 (124)
37 3ztg_A E3 ubiquitin-protein li 99.0 1.5E-10 5.3E-15 96.7 5.1 51 495-548 8-61 (92)
38 2y43_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 100.0 3.4 48 499-549 21-69 (99)
39 2ecj_A Tripartite motif-contai 99.0 1.2E-10 4E-15 89.0 3.8 46 495-543 10-58 (58)
40 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.4E-15 90.6 4.8 53 499-551 2-57 (65)
41 2ckl_B Ubiquitin ligase protei 99.0 2.3E-10 7.7E-15 105.8 4.3 51 497-549 51-102 (165)
42 1jm7_A BRCA1, breast cancer ty 98.9 4E-10 1.4E-14 96.9 4.4 49 500-551 21-72 (112)
43 1z6u_A NP95-like ring finger p 98.9 7.1E-10 2.4E-14 102.2 4.7 48 500-550 78-126 (150)
44 3hct_A TNF receptor-associated 98.9 5.7E-10 1.9E-14 98.0 3.6 53 495-550 13-66 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 1.6E-10 5.4E-15 100.7 -0.7 49 497-548 12-61 (115)
46 2kr4_A Ubiquitin conjugation f 98.8 2.2E-09 7.4E-14 90.0 5.2 53 495-550 9-61 (85)
47 1rmd_A RAG1; V(D)J recombinati 98.8 8.9E-10 3E-14 96.1 3.0 49 500-551 23-72 (116)
48 1bor_A Transcription factor PM 98.8 7.3E-10 2.5E-14 85.7 1.9 50 497-552 3-52 (56)
49 1e4u_A Transcriptional repress 98.8 2.1E-09 7E-14 89.3 3.7 55 496-551 7-64 (78)
50 2vje_A E3 ubiquitin-protein li 98.8 2.1E-09 7.2E-14 85.6 3.4 48 498-548 6-56 (64)
51 2kre_A Ubiquitin conjugation f 98.8 4.7E-09 1.6E-13 90.8 5.4 54 495-551 24-77 (100)
52 1wgm_A Ubiquitin conjugation f 98.8 4.2E-09 1.4E-13 90.8 4.7 54 495-551 17-71 (98)
53 2y1n_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 111.2 5.3 49 499-550 331-380 (389)
54 3knv_A TNF receptor-associated 98.7 2.3E-09 7.8E-14 98.0 1.7 51 496-549 27-78 (141)
55 1jm7_B BARD1, BRCA1-associated 98.7 2.6E-09 9E-14 93.7 1.0 47 499-550 21-68 (117)
56 2vje_B MDM4 protein; proto-onc 98.7 6.7E-09 2.3E-13 82.4 3.0 50 498-548 5-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 85.9 1.7 43 500-549 24-67 (74)
58 2c2l_A CHIP, carboxy terminus 98.6 2.1E-08 7.1E-13 97.8 4.8 52 496-550 204-256 (281)
59 2yu4_A E3 SUMO-protein ligase 98.6 2.5E-08 8.4E-13 84.8 3.9 47 497-546 4-59 (94)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.6 4.2E-08 1.4E-12 77.8 4.3 50 497-549 3-59 (60)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.6E-08 5.4E-13 105.3 2.4 55 496-550 304-374 (381)
62 3hcs_A TNF receptor-associated 98.6 2.6E-08 8.7E-13 92.3 3.5 53 495-550 13-66 (170)
63 1wim_A KIAA0161 protein; ring 98.5 6E-08 2E-12 81.9 3.5 48 499-546 4-61 (94)
64 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.6E-12 75.7 4.1 48 496-550 11-59 (68)
65 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.6E-12 77.4 2.7 44 500-550 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.4 2.4E-07 8.1E-12 88.5 4.8 52 496-550 102-154 (179)
67 2yho_A E3 ubiquitin-protein li 98.3 9.8E-08 3.4E-12 79.0 1.4 43 500-549 18-61 (79)
68 3htk_C E3 SUMO-protein ligase 98.2 4E-07 1.4E-11 91.7 2.8 53 495-549 176-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.2 3.1E-07 1.1E-11 95.5 1.7 45 498-549 293-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.2 4.4E-07 1.5E-11 72.0 1.6 48 501-551 4-52 (61)
71 3vk6_A E3 ubiquitin-protein li 97.7 2.1E-05 7.1E-10 68.8 4.4 45 502-548 3-48 (101)
72 3nw0_A Non-structural maintena 97.6 3.2E-05 1.1E-09 76.6 3.9 51 499-551 179-231 (238)
73 2ko5_A Ring finger protein Z; 95.6 0.0042 1.4E-07 53.8 1.9 50 497-551 25-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.012 4.2E-07 49.6 2.3 35 499-533 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.2 0.054 1.8E-06 43.6 3.2 51 497-550 9-63 (66)
76 1wil_A KIAA1045 protein; ring 89.4 0.2 7E-06 42.6 2.9 38 495-533 10-47 (89)
77 2l5u_A Chromodomain-helicase-D 80.6 0.54 1.8E-05 36.9 1.2 48 496-546 7-58 (61)
78 2k16_A Transcription initiatio 79.3 0.42 1.4E-05 38.6 0.2 51 497-547 15-69 (75)
79 2lv9_A Histone-lysine N-methyl 79.2 0.44 1.5E-05 40.8 0.3 49 497-546 25-76 (98)
80 2ysm_A Myeloid/lymphoid or mix 78.0 0.5 1.7E-05 40.8 0.3 39 497-535 4-42 (111)
81 1we9_A PHD finger family prote 76.6 0.41 1.4E-05 37.4 -0.5 50 497-546 3-58 (64)
82 3m62_A Ubiquitin conjugation f 76.5 0.93 3.2E-05 52.9 2.1 53 495-550 886-939 (968)
83 1mm2_A MI2-beta; PHD, zinc fin 75.5 0.44 1.5E-05 37.4 -0.7 48 497-547 6-57 (61)
84 1f62_A Transcription factor WS 75.3 0.93 3.2E-05 33.9 1.1 44 502-545 2-49 (51)
85 3v43_A Histone acetyltransfera 74.7 2.5 8.7E-05 36.6 3.9 34 499-532 4-43 (112)
86 1wep_A PHF8; structural genomi 74.1 2 6.9E-05 35.0 3.0 50 498-548 10-65 (79)
87 3u5n_A E3 ubiquitin-protein li 74.0 0.53 1.8E-05 44.9 -0.6 48 497-547 4-55 (207)
88 1wem_A Death associated transc 73.5 0.86 3E-05 36.9 0.6 50 499-549 15-73 (76)
89 2yql_A PHD finger protein 21A; 68.8 0.33 1.1E-05 37.3 -2.7 46 497-545 6-55 (56)
90 1fp0_A KAP-1 corepressor; PHD 67.3 1.8 6.3E-05 36.7 1.3 51 496-549 21-75 (88)
91 2yt5_A Metal-response element- 65.6 2.9 0.0001 32.6 2.1 51 497-547 3-62 (66)
92 1wev_A Riken cDNA 1110020M19; 62.4 0.75 2.6E-05 38.7 -2.0 48 499-546 15-72 (88)
93 1xwh_A Autoimmune regulator; P 60.4 0.85 2.9E-05 36.2 -2.0 49 497-548 5-57 (66)
94 2puy_A PHD finger protein 21A; 58.9 1 3.6E-05 34.9 -1.6 45 499-546 4-52 (60)
95 1wew_A DNA-binding family prot 58.8 2 6.7E-05 35.1 -0.1 50 498-548 14-74 (78)
96 2cs3_A Protein C14ORF4, MY039 58.7 7 0.00024 33.1 3.2 39 497-536 12-52 (93)
97 2ri7_A Nucleosome-remodeling f 58.1 1.6 5.6E-05 40.1 -0.7 48 497-545 5-58 (174)
98 2e6r_A Jumonji/ARID domain-con 57.4 0.86 3E-05 38.6 -2.5 51 495-545 11-65 (92)
99 2lbm_A Transcriptional regulat 57.0 9.4 0.00032 35.0 4.2 48 496-546 59-117 (142)
100 1weu_A Inhibitor of growth fam 56.8 3.9 0.00013 34.9 1.4 47 498-548 34-87 (91)
101 2kwj_A Zinc finger protein DPF 56.0 2.4 8.3E-05 36.9 0.0 33 501-533 2-41 (114)
102 1wen_A Inhibitor of growth fam 55.5 3.7 0.00013 33.2 1.1 47 497-547 13-66 (71)
103 2xb1_A Pygopus homolog 2, B-ce 54.8 1.8 6.3E-05 37.4 -0.9 50 500-549 3-64 (105)
104 3shb_A E3 ubiquitin-protein li 51.7 1.9 6.6E-05 35.6 -1.2 44 502-545 28-76 (77)
105 3o70_A PHD finger protein 13; 51.7 1.8 6.1E-05 34.8 -1.4 49 496-545 15-66 (68)
106 3ask_A E3 ubiquitin-protein li 50.2 2.4 8.3E-05 41.8 -1.0 46 501-546 175-225 (226)
107 3i2d_A E3 SUMO-protein ligase 48.4 13 0.00046 39.0 4.1 48 500-549 249-300 (371)
108 2l43_A N-teminal domain from h 48.1 15 0.0005 30.8 3.6 54 496-549 21-78 (88)
109 2kgg_A Histone demethylase jar 47.8 5.7 0.0002 29.9 1.0 43 502-544 4-52 (52)
110 2vpb_A Hpygo1, pygopus homolog 47.7 12 0.00041 29.7 2.9 36 497-532 5-42 (65)
111 1joc_A EEA1, early endosomal a 47.5 20 0.00067 31.8 4.6 35 499-533 68-103 (125)
112 3v43_A Histone acetyltransfera 47.2 4.6 0.00016 35.0 0.4 44 502-545 63-111 (112)
113 4fo9_A E3 SUMO-protein ligase 46.7 16 0.00056 38.2 4.5 48 500-549 215-266 (360)
114 1wee_A PHD finger family prote 45.2 1.3 4.6E-05 35.5 -3.1 51 497-548 13-68 (72)
115 2e6s_A E3 ubiquitin-protein li 43.5 3.7 0.00013 33.7 -0.7 45 501-545 27-76 (77)
116 3asl_A E3 ubiquitin-protein li 43.4 4.2 0.00014 32.7 -0.4 45 502-546 20-69 (70)
117 2d8v_A Zinc finger FYVE domain 43.3 11 0.00037 30.7 1.9 34 496-533 4-38 (67)
118 1iml_A CRIP, cysteine rich int 41.6 12 0.0004 29.4 1.9 43 499-545 26-69 (76)
119 2cu8_A Cysteine-rich protein 2 41.5 13 0.00046 29.0 2.3 41 500-550 9-49 (76)
120 1weo_A Cellulose synthase, cat 40.1 43 0.0015 28.7 5.2 50 499-548 15-69 (93)
121 2ku3_A Bromodomain-containing 39.9 20 0.00067 28.9 3.1 50 496-545 12-65 (71)
122 3ql9_A Transcriptional regulat 38.9 23 0.00079 32.0 3.6 47 496-545 53-110 (129)
123 2rsd_A E3 SUMO-protein ligase 37.9 2 6.8E-05 34.2 -3.2 46 499-545 9-64 (68)
124 2ysm_A Myeloid/lymphoid or mix 37.4 4.3 0.00015 34.8 -1.4 46 502-547 56-105 (111)
125 1zbd_B Rabphilin-3A; G protein 35.8 12 0.00042 33.8 1.3 33 499-531 54-88 (134)
126 2vnf_A ING 4, P29ING4, inhibit 34.3 4.8 0.00017 31.3 -1.4 43 499-545 9-58 (60)
127 2dj7_A Actin-binding LIM prote 33.8 26 0.00089 28.0 2.9 41 498-548 13-53 (80)
128 3c6w_A P28ING5, inhibitor of g 33.6 5.3 0.00018 31.1 -1.3 43 499-545 8-57 (59)
129 4gne_A Histone-lysine N-methyl 33.4 19 0.00064 31.5 2.0 48 497-549 12-65 (107)
130 1x63_A Skeletal muscle LIM-pro 32.4 36 0.0012 26.8 3.4 42 500-550 15-56 (82)
131 1x61_A Thyroid receptor intera 32.3 39 0.0013 25.8 3.6 10 502-511 7-16 (72)
132 1x4k_A Skeletal muscle LIM-pro 31.2 33 0.0011 26.2 3.0 40 501-549 6-45 (72)
133 1z2q_A LM5-1; membrane protein 29.8 34 0.0012 28.0 3.0 39 495-533 16-55 (84)
134 2yw8_A RUN and FYVE domain-con 29.4 31 0.0011 28.2 2.6 37 497-533 16-53 (82)
135 3mpx_A FYVE, rhogef and PH dom 29.3 11 0.00039 38.7 0.0 49 499-547 374-430 (434)
136 1wyh_A SLIM 2, skeletal muscle 29.1 40 0.0014 25.7 3.2 40 501-549 6-45 (72)
137 1wfk_A Zinc finger, FYVE domai 29.1 32 0.0011 28.7 2.7 38 496-533 5-43 (88)
138 2co8_A NEDD9 interacting prote 28.9 37 0.0013 27.1 3.0 43 497-549 12-54 (82)
139 3a1b_A DNA (cytosine-5)-methyl 28.8 37 0.0013 31.8 3.3 47 495-545 74-133 (159)
140 3t7l_A Zinc finger FYVE domain 28.2 29 0.00098 28.9 2.3 37 498-534 18-55 (90)
141 1g47_A Pinch protein; LIM doma 27.8 46 0.0016 25.7 3.3 43 498-549 9-51 (77)
142 3pwf_A Rubrerythrin; non heme 27.8 20 0.00069 33.4 1.4 24 516-546 139-162 (170)
143 1y02_A CARP2, FYVE-ring finger 27.3 6.7 0.00023 35.0 -1.9 47 498-544 17-64 (120)
144 3kqi_A GRC5, PHD finger protei 26.7 11 0.00039 30.3 -0.5 48 499-546 8-61 (75)
145 1dvp_A HRS, hepatocyte growth 26.5 25 0.00087 33.5 1.9 35 499-533 160-195 (220)
146 3zyq_A Hepatocyte growth facto 26.5 28 0.00095 33.6 2.1 35 499-533 163-198 (226)
147 1zfo_A LAsp-1; LIM domain, zin 26.2 16 0.00055 24.7 0.3 27 501-529 4-30 (31)
148 2o35_A Hypothetical protein DU 26.0 25 0.00084 30.8 1.5 12 525-536 43-54 (105)
149 3fyb_A Protein of unknown func 25.8 25 0.00085 30.7 1.5 12 525-536 42-53 (104)
150 1vfy_A Phosphatidylinositol-3- 25.7 40 0.0014 26.9 2.7 32 501-532 12-44 (73)
151 1x4u_A Zinc finger, FYVE domai 25.6 42 0.0014 27.5 2.8 39 495-533 9-48 (84)
152 1z60_A TFIIH basal transcripti 25.4 22 0.00077 28.0 1.0 43 501-543 16-58 (59)
153 1x4l_A Skeletal muscle LIM-pro 24.8 60 0.002 24.8 3.4 40 500-548 5-46 (72)
154 3f6q_B LIM and senescent cell 24.6 29 0.001 26.2 1.6 42 499-549 10-51 (72)
155 2jvx_A NF-kappa-B essential mo 23.9 15 0.00051 25.0 -0.2 13 537-549 3-15 (28)
156 2d8y_A Eplin protein; LIM doma 23.5 55 0.0019 26.4 3.1 40 500-549 15-54 (91)
157 2pv0_B DNA (cytosine-5)-methyl 23.3 42 0.0014 35.5 2.9 49 495-546 88-148 (386)
158 2g6q_A Inhibitor of growth pro 23.1 11 0.00036 29.7 -1.3 43 499-545 10-59 (62)
159 2dar_A PDZ and LIM domain prot 22.6 57 0.002 26.2 3.1 41 498-549 23-63 (90)
160 2l3k_A Rhombotin-2, linker, LI 22.5 29 0.001 29.8 1.4 44 498-544 34-77 (123)
161 1x64_A Alpha-actinin-2 associa 22.3 71 0.0024 25.6 3.6 42 497-549 22-63 (89)
162 2zet_C Melanophilin; complex, 22.3 29 0.00099 32.0 1.3 32 499-530 67-100 (153)
163 2cor_A Pinch protein; LIM doma 20.9 55 0.0019 25.9 2.6 42 497-549 12-53 (79)
164 2d8x_A Protein pinch; LIM doma 20.6 67 0.0023 24.4 2.9 39 500-549 5-43 (70)
165 1x68_A FHL5 protein; four-and- 20.5 79 0.0027 24.5 3.4 40 500-548 5-46 (76)
166 1x62_A C-terminal LIM domain p 20.3 56 0.0019 25.6 2.5 40 498-548 13-52 (79)
167 2d8z_A Four and A half LIM dom 20.1 85 0.0029 23.7 3.4 39 500-549 5-43 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=132.46 Aligned_cols=78 Identities=26% Similarity=0.632 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHhhccceeccCCCcccccccCCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCC
Q 008670 464 TVSTALTDEAILKCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPIC 543 (557)
Q Consensus 464 ~vstgLSee~I~k~Lp~~~y~~~~~e~~~~~~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVC 543 (557)
....+++++.| +.|+...+.... ....++..|+||+++|..++.+..|||+|.||..||..||..+.+||+|
T Consensus 12 ~~~~~~s~~~i-~~lp~~~~~~~~-------~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 83 (91)
T 2l0b_A 12 VANPPASKESI-DALPEILVTEDH-------GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83 (91)
T ss_dssp SCCCCCCHHHH-HTSCEEECCTTC-------SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTT
T ss_pred cCCCCCCHHHH-HhCCCeeecccc-------cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCc
Confidence 34567888887 458877776433 3355678999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008670 544 KAPAES 549 (557)
Q Consensus 544 R~eV~~ 549 (557)
|..+.+
T Consensus 84 r~~~~~ 89 (91)
T 2l0b_A 84 RCMFPP 89 (91)
T ss_dssp CCBSSC
T ss_pred CccCCC
Confidence 998875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=122.65 Aligned_cols=68 Identities=24% Similarity=0.684 Sum_probs=56.8
Q ss_pred hhccceeccCCCcccccccCCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 476 KCLKTSIYQPAPLDVALSCSGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 476 k~Lp~~~y~~~~~e~~~~~~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
+.|+.+.|.... ...++..|+||+++|..++.+..|||+|.||..||.+||+.+.+||+||+.+.+..
T Consensus 7 ~~lp~~~~~~~~--------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 7 GQLPSYRFNPNN--------HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SSCCCEEBCSSS--------CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhCCcEEecCcc--------ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 346666665432 34567789999999999998999999999999999999999999999999987753
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=117.47 Aligned_cols=59 Identities=27% Similarity=0.724 Sum_probs=52.1
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSS 553 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ss 553 (557)
....++..|+||+++|..++.+..|+|+|.||..||.+||+.+.+||+||+.+......
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 34556789999999999988888999999999999999999999999999998766543
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=115.48 Aligned_cols=59 Identities=37% Similarity=0.837 Sum_probs=52.1
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSS 553 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ss 553 (557)
.....+..|+||++.|..++.+..|+|+|.||..||.+||..+.+||+||..+......
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 34556778999999999888899999999999999999999999999999998876543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.49 E-value=1.2e-14 Score=110.60 Aligned_cols=51 Identities=35% Similarity=0.865 Sum_probs=47.0
Q ss_pred CCCccccccccccccCceeEEeC-CCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLH-CQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LP-CgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
+++..|+||+++|..++.+..++ |+|.||..||.+||+.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999999899998 9999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=2.3e-14 Score=116.60 Aligned_cols=58 Identities=31% Similarity=0.862 Sum_probs=51.6
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSS 553 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ss 553 (557)
...++..|+||++.|..++.+..|+|+|.||..||.+||..+.+||+||..+......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 3556789999999999888888999999999999999999999999999998876543
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=2.2e-13 Score=118.35 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=44.5
Q ss_pred CCccccccccccccCc---------------eeEEeCCCCcchHHHHHHHHh-----cCCCCCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGE---------------EVGRLHCQHRYHVLCIQQWLR-----LTNWCPICKAPAESAPSS 553 (557)
Q Consensus 499 ed~~CsICLEeF~~ge---------------eV~~LPCgH~FH~~CI~~WL~-----~k~SCPVCR~eV~~s~ss 553 (557)
.+..|+||++.|..+. .+..++|+|.||..||..||. .+.+||+||..+......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 4568999999996643 344789999999999999994 577999999988766543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.4e-13 Score=104.46 Aligned_cols=51 Identities=27% Similarity=0.655 Sum_probs=44.5
Q ss_pred CCCccccccccccccCc-eeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGE-EVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~ge-eV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
.++..|+||++.|..++ .+..++|+|.||..||.+||..+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999996544 4777899999999999999999999999999875
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=114.48 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=42.3
Q ss_pred CCCccccccccccc-----------cCceeEEeC-CCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYV-----------VGEEVGRLH-CQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 498 ~ed~~CsICLEeF~-----------~geeV~~LP-CgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
.++..|+||+++|. .++.+..|+ |+|.||..||.+||..+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34566777777774 345566665 999999999999999999999999987643
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=106.57 Aligned_cols=55 Identities=24% Similarity=0.551 Sum_probs=46.7
Q ss_pred CCCCCCccccccccccccC----ceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVG----EEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~g----eeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
....++..|+||++.|... ..+..++|+|.||..||..||..+.+||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455678899999999754 335788999999999999999999999999998764
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=3.5e-13 Score=107.13 Aligned_cols=56 Identities=23% Similarity=0.541 Sum_probs=47.8
Q ss_pred CCCCccccccccccccC----ceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVG----EEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPS 552 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~g----eeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~s 552 (557)
..++..|+||++.|... +.+..++|||.||..||.+||..+.+||+||..+.....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 45677899999999653 445788999999999999999999999999999886543
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=6.1e-13 Score=103.33 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=45.8
Q ss_pred CCccccccccccccC----ceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVG----EEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 499 ed~~CsICLEeF~~g----eeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
++..|+||++.|... +.+..++|||.||..||.+||..+..||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456899999999753 44578899999999999999999999999999987654
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.6e-13 Score=110.14 Aligned_cols=59 Identities=24% Similarity=0.476 Sum_probs=48.9
Q ss_pred CCCCCccccccccccccCceeEEeCCC-----CcchHHHHHHHHhcC--CCCCCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQ-----HRYHVLCIQQWLRLT--NWCPICKAPAESAPSSPS 555 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCg-----H~FH~~CI~~WL~~k--~SCPVCR~eV~~s~ss~p 555 (557)
...++..|.||+++|..++.+ .+||. |.||..||.+||..+ .+||+||+.+.......|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 345567899999999877765 68996 999999999999876 499999999987665543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.2e-12 Score=114.98 Aligned_cols=52 Identities=29% Similarity=0.612 Sum_probs=43.8
Q ss_pred CCCCccccccccccccC-------------c--eeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVG-------------E--EVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~g-------------e--eV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
..++..|+||++.|... + .+..++|+|.||..||.+||..+.+||+||++..
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 34567899999999754 1 2667899999999999999999999999999854
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.5e-13 Score=106.32 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=45.5
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
...++..|+||++.|.. ...|+|+|.||..||..||..+..||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 34567789999999854 467899999999999999999999999999987544
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=9.2e-13 Score=104.99 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=46.5
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPS 552 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~s 552 (557)
...++..|+||++.|.. ..++|+|.||..||.+||..+..||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 45567899999999975 688999999999999999999999999999886553
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.2e-12 Score=104.68 Aligned_cols=56 Identities=23% Similarity=0.551 Sum_probs=47.8
Q ss_pred CCCCCCccccccccccccCce-eEEeCCCCcchHHHHHHHHhcC---CCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQWLRLT---NWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~WL~~k---~SCPVCR~eV~~s 550 (557)
....+...|+||++.|...+. ...|+|||.||..||..|+..+ ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345667899999999987664 6778999999999999999986 7999999987654
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.6e-12 Score=101.94 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=46.7
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPSS 553 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ss 553 (557)
....++..|+||++.|.. .+..++|+|.||..||..||..+..||+||..+......
T Consensus 10 ~~~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 10 SELTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hhcCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 345567899999999975 233349999999999999999999999999998766543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.25 E-value=2.7e-12 Score=101.52 Aligned_cols=49 Identities=37% Similarity=0.828 Sum_probs=43.1
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
.+..|+||++.|.. .+..++|+|.||..||..||..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999864 35788999999999999999999999999998764
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=98.46 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=44.8
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh---cCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR---LTNWCPICKAPAESAP 551 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~---~k~SCPVCR~eV~~s~ 551 (557)
....++..|+||++.|.. ...|+|||.||..||..||. .+..||+||..+....
T Consensus 15 ~~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345667899999999874 45679999999999999997 4568999999987653
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=100.89 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=43.6
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
.......|+||++.|.. ...++|+|.||..||..||.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34556789999999964 346899999999999999999999999999985
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.18 E-value=6.8e-12 Score=113.34 Aligned_cols=48 Identities=31% Similarity=0.882 Sum_probs=42.2
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
+..|+||++.|.. ...|||||.||..||..||..+.+||+||..+...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4579999999964 45789999999999999999999999999988643
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=99.20 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=45.3
Q ss_pred CCCCCCccccccccccccCceeEEeC-CCCcchHHHHHHHHhcC--CCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLH-CQHRYHVLCIQQWLRLT--NWCPICKAPAESAPS 552 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LP-CgH~FH~~CI~~WL~~k--~SCPVCR~eV~~s~s 552 (557)
....++..|+||++.|.. ...|+ |||.||..||..||..+ ..||+||..+.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred ccCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 345567899999999974 44689 99999999999999876 699999998665543
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=3.3e-12 Score=114.35 Aligned_cols=53 Identities=30% Similarity=0.636 Sum_probs=2.0
Q ss_pred CCCCcccccccccccc-------------Cce--eEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVV-------------GEE--VGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~-------------gee--V~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
..+++.|+||+++|.. +++ +..++|+|.||..||.+||..+.+||+||++...
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3456789999999975 232 3345899999999999999999999999998654
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=96.14 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=43.9
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh-cCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR-LTNWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~-~k~SCPVCR~eV~~s 550 (557)
....++..|+||++.|.... .++|||.||..||.+||. .+..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34556789999999997543 479999999999999994 567999999998764
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.3e-11 Score=106.45 Aligned_cols=54 Identities=24% Similarity=0.578 Sum_probs=46.5
Q ss_pred CCCccccccccccccC----ceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVG----EEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 498 ~ed~~CsICLEeF~~g----eeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
.++..|+||++.|... +.+..++|||.||..||.+||..+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567899999999754 44578999999999999999999999999999887654
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=5.5e-11 Score=96.78 Aligned_cols=53 Identities=25% Similarity=0.522 Sum_probs=44.8
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc------CCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL------TNWCPICKAPAESAP 551 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~------k~SCPVCR~eV~~s~ 551 (557)
...++..|+||++.|... ..++|+|.||..||..|+.. ...||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 355678999999999653 37899999999999999998 679999999987643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.7e-11 Score=96.26 Aligned_cols=53 Identities=23% Similarity=0.567 Sum_probs=44.9
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc------CCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL------TNWCPICKAPAESAP 551 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~------k~SCPVCR~eV~~s~ 551 (557)
...++..|+||++.|.. ...|+|+|.||..||..|+.. ...||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 45567899999999965 346799999999999999988 789999999987654
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.10 E-value=6.3e-11 Score=96.19 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=44.8
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAESAP 551 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~~s~ 551 (557)
...++..|+||++.|.. ...++|||.||..||..||.. +.+||+||..+....
T Consensus 4 ~~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CCSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CCcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 34567899999999964 356899999999999999987 789999999887543
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.1e-11 Score=91.70 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=39.0
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh---cCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR---LTNWCPIC 543 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~---~k~SCPVC 543 (557)
....++..|+||++.|.. ...|+|||.||..||.+||. .+..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345667899999999974 45679999999999999998 45689998
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=8.4e-11 Score=97.46 Aligned_cols=54 Identities=20% Similarity=0.524 Sum_probs=45.1
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC--CCCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT--NWCPICKAPAESAPS 552 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k--~SCPVCR~eV~~s~s 552 (557)
.+....|.||.+.|..++.. ..|+|.||..||.+||+.+ .+||+||.+......
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred cCCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 44567899999999877643 3899999999999999987 899999998775543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.07 E-value=3e-11 Score=97.79 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=44.4
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc-------CCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-------TNWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-------k~SCPVCR~eV~~s 550 (557)
....++..|+||++.|... ..|+|||.||..||..|+.. ...||+||..+...
T Consensus 7 ~~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred hhcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3456678999999999653 35899999999999999987 67899999998754
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.06 E-value=4.3e-11 Score=102.63 Aligned_cols=50 Identities=30% Similarity=0.645 Sum_probs=41.9
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESA 550 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k-~SCPVCR~eV~~s 550 (557)
++..|+||++.|.. .+..++|||.||..||..||..+ ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 35689999999964 33338999999999999999988 6999999988643
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=7e-11 Score=103.38 Aligned_cols=55 Identities=24% Similarity=0.570 Sum_probs=46.6
Q ss_pred CCCCccccccccccccC----ceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVG----EEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~g----eeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
..+...|+||++.|... ..+..++|||.||..||.+||..+++||+||..+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 45677899999999753 33478899999999999999999999999999987543
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=9.1e-11 Score=101.32 Aligned_cols=51 Identities=24% Similarity=0.726 Sum_probs=43.0
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
.++..|+||++.|.. .+..++|||.||..||..||..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 346789999999964 333349999999999999999999999999998754
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=103.13 Aligned_cols=47 Identities=26% Similarity=0.466 Sum_probs=40.9
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC-CCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN-WCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~-SCPVCR~eV~~ 549 (557)
+..|+||++.|.. ...++|||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4589999999974 45789999999999999998654 99999999876
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=96.69 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=43.0
Q ss_pred CCCCCCccccccccccccCceeEEeC-CCCcchHHHHHHHHhcC--CCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLH-CQHRYHVLCIQQWLRLT--NWCPICKAPAE 548 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LP-CgH~FH~~CI~~WL~~k--~SCPVCR~eV~ 548 (557)
....++..|+||++.|.. ...|+ |||.||..||..|+... ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345677899999999974 45789 99999999999999754 59999999874
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=7.9e-11 Score=100.04 Aligned_cols=48 Identities=31% Similarity=0.791 Sum_probs=41.5
Q ss_pred CCccccccccccccCceeEEe-CCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRL-HCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~L-PCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
++..|+||++.|.. ...+ +|||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 35689999999974 3345 899999999999999999999999998865
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=88.98 Aligned_cols=46 Identities=26% Similarity=0.654 Sum_probs=38.0
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh---cCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR---LTNWCPIC 543 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~---~k~SCPVC 543 (557)
....++..|+||++.|... ..|+|+|.||..||.+|+. .+..||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455678999999999764 3589999999999999954 56799998
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.9e-10 Score=90.60 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=42.5
Q ss_pred CCcccccccc-ccccCcee-EEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQE-EYVVGEEV-GRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAESAP 551 (557)
Q Consensus 499 ed~~CsICLE-eF~~geeV-~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~~s~ 551 (557)
++..|+||++ .|...... ..++|||.||..||.+|+.. ...||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4568999999 77665433 45799999999999999765 468999999987544
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=2.3e-10 Score=105.82 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.5
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~~ 549 (557)
..++..|+||++.|.. .+..++|||.||..||..||.. +..||+||..+..
T Consensus 51 ~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456699999999974 3444599999999999999997 7899999998854
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=4e-10 Score=96.93 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=41.2
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC---CCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN---WCPICKAPAESAP 551 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~---SCPVCR~eV~~s~ 551 (557)
...|+||++.|... ..++|||.||..||..|+..+. .||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 34799999999653 3579999999999999999764 8999999887654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=7.1e-10 Score=102.22 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=41.5
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC-CCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN-WCPICKAPAESA 550 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~-SCPVCR~eV~~s 550 (557)
...|+||++.|.. ...|+|||.||..||..||.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4589999999964 34689999999999999999764 899999998876
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=5.7e-10 Score=98.04 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC-CCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN-WCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~-SCPVCR~eV~~s 550 (557)
....++..|+||++.|.. ...++|||.||..||..||.... .||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345567899999999975 35689999999999999998865 999999988653
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=1.6e-10 Score=100.74 Aligned_cols=49 Identities=27% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAE 548 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~ 548 (557)
..++..|+||++.|.. ...|+|||.||..||..|+.. +..||+||..+.
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4456789999999964 457899999999999999977 678999999875
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=2.2e-09 Score=89.99 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=45.4
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
....+...|+||++.|.+ ...++|||.|+..||..||..+.+||+|+..+...
T Consensus 9 ~~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTCCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hcCchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 345567899999999975 45789999999999999999999999999987643
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=8.9e-10 Score=96.09 Aligned_cols=49 Identities=24% Similarity=0.703 Sum_probs=42.1
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAESAP 551 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~~s~ 551 (557)
+..|+||++.|.. ...++|||.||..||..||.. ...||+||..+....
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 5689999999964 345899999999999999997 779999999987644
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=7.3e-10 Score=85.66 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=41.7
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAPS 552 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~s 552 (557)
..++..|+||++.|... ..|+|+|.||..||..| ...||+||+.+.....
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred cccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 34567899999999753 47899999999999885 6789999999876653
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=2.1e-09 Score=89.35 Aligned_cols=55 Identities=22% Similarity=0.617 Sum_probs=43.3
Q ss_pred CCCCCccccccccccccCceeEEe--CCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLRL-TNWCPICKAPAESAP 551 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL~~-k~SCPVCR~eV~~s~ 551 (557)
...++..|+||++.|...+ +..+ +|||.||..||..|+.. ...||+||..+....
T Consensus 7 ~~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3566789999999986544 2344 49999999999999854 678999999887654
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.80 E-value=2.1e-09 Score=85.56 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=40.5
Q ss_pred CCCccccccccccccCceeEEe--CCCCc-chHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRL--HCQHR-YHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~L--PCgH~-FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
.++..|.||++.+.+ +..+ ||||. |+..|+..|+..+..||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345689999998754 3344 99999 899999999999999999999875
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=4.7e-09 Score=90.85 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=46.0
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
....+...|+||++.|.+ ...++|||.|+..||..||..+.+||+|+..+....
T Consensus 24 ~~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp SSCSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred ccCcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 345567899999999975 457899999999999999999999999999887543
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.77 E-value=4.2e-09 Score=90.84 Aligned_cols=54 Identities=13% Similarity=0.008 Sum_probs=45.9
Q ss_pred CCCCCCccccccccccccCceeEEeCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQ-HRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCg-H~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
....++..|+||++.|.+ ..+++|| |.|+..||..||..+.+||+|+..+....
T Consensus 17 ~~~p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CSCCTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred hcCcHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 345567899999999975 4478999 99999999999999999999999887643
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=4.1e-09 Score=111.16 Aligned_cols=49 Identities=24% Similarity=0.535 Sum_probs=42.5
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHh-cCCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR-LTNWCPICKAPAESA 550 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~-~k~SCPVCR~eV~~s 550 (557)
....|+||++.+.. +..+||||.||..||..|+. .+..||+||..+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34789999999853 66899999999999999999 688999999988654
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.73 E-value=2.3e-09 Score=97.98 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC-CCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN-WCPICKAPAES 549 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~-SCPVCR~eV~~ 549 (557)
...++..|+||++.|... .+++|||.||..||..||.... .||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 456678999999999753 4689999999999999998765 89999998643
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2.6e-09 Score=93.65 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=39.7
Q ss_pred CCccccccccccccCceeEEe-CCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRL-HCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~L-PCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
++..|+||++.|.. ...| +|||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 35689999999964 3356 9999999999999998 8899999998543
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.68 E-value=6.7e-09 Score=82.40 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=40.1
Q ss_pred CCCccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
..+..|.||++.+.+.. +..+||||. |+..|+..|...+..||+||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34568999999875421 222399998 999999999998899999999875
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=4e-09 Score=85.90 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=37.3
Q ss_pred CccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
+..|.||++.+.. ...|||||. ||..||..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4589999998854 567899999 999999999 889999998753
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=2.1e-08 Score=97.85 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=43.2
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESA 550 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k-~SCPVCR~eV~~s 550 (557)
...+...|+||++.|.+ ..++||||.||..||..||..+ .+||+||..+...
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 45567899999999975 4478999999999999999874 4599999988643
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=2.5e-08 Score=84.85 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=39.1
Q ss_pred CCCCccccccccccccCceeEEeC-CCCcchHHHHHHHHhcC------CCCCC--CCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLH-CQHRYHVLCIQQWLRLT------NWCPI--CKAP 546 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LP-CgH~FH~~CI~~WL~~k------~SCPV--CR~e 546 (557)
..++..|+||++.|.+ ..+++ |||.|+..||.+||..+ .+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3556789999999974 44675 99999999999999864 48999 9865
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.56 E-value=4.2e-08 Score=77.80 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=39.1
Q ss_pred CCCCccccccccccccCceeEEeCCC--C---cchHHHHHHHHhc--CCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQ--H---RYHVLCIQQWLRL--TNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCg--H---~FH~~CI~~WL~~--k~SCPVCR~eV~~ 549 (557)
.++...|.||+++. ++.+ .+||. | .||..||.+||.. +.+||+|++.+..
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 34567899999984 3344 58965 4 9999999999975 6789999998753
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.56 E-value=1.6e-08 Score=105.26 Aligned_cols=55 Identities=29% Similarity=0.811 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccCceeE-----EeCCCCcchHHHHHHHHhcC-----------CCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVG-----RLHCQHRYHVLCIQQWLRLT-----------NWCPICKAPAESA 550 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~-----~LPCgH~FH~~CI~~WL~~k-----------~SCPVCR~eV~~s 550 (557)
..+....|+||++.+..+.++. .++|+|.||..||.+||+.. ..||.||+++..+
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3456779999999998744332 24799999999999999862 4699999987654
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=2.6e-08 Score=92.31 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=44.1
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k-~SCPVCR~eV~~s 550 (557)
....++..|+||++.|... ..++|||.||..||.+||... ..||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3456678999999999753 468999999999999999875 4999999988653
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=6e-08 Score=81.88 Aligned_cols=48 Identities=29% Similarity=0.678 Sum_probs=39.2
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhc--------CCCCCC--CCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL--------TNWCPI--CKAP 546 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~--------k~SCPV--CR~e 546 (557)
+...|+||+++|...+.+..++|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46689999999976654444579999999999999974 237999 9987
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.6e-07 Score=75.69 Aligned_cols=48 Identities=23% Similarity=0.563 Sum_probs=39.4
Q ss_pred CCCCCccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
...++..|.||++.+.. +..|||+|. ||..|+.. ...||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 34557789999998753 678999999 99999984 57899999988653
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=77.38 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=36.1
Q ss_pred CccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
+..|+||++.+.. +..|||||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999999854 457899999 99999964 37899999988653
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.36 E-value=2.4e-07 Score=88.46 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT-NWCPICKAPAESA 550 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k-~SCPVCR~eV~~s 550 (557)
...+...|+||++.|.+ ..++||||.|+..||..||..+ .+||+|+..+...
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 45567899999999974 4477999999999999999874 4799999987654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=9.8e-08 Score=79.04 Aligned_cols=43 Identities=28% Similarity=0.617 Sum_probs=36.3
Q ss_pred CccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
+..|.||++.+.. +..+||||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3579999998753 678999999 999999988 399999998754
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4e-07 Score=91.68 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=42.8
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC--CCCCC--CCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT--NWCPI--CKAPAES 549 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k--~SCPV--CR~eV~~ 549 (557)
........|+||++.|. +.|..+.|||.|+..||..|+..+ ..||+ |+..+..
T Consensus 176 ~~~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 176 EGGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSSBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred cCCceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34556779999999996 445556999999999999999864 47999 9987643
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=3.1e-07 Score=95.52 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=38.6
Q ss_pred CCCccccccccccccCceeEEeCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHR-YHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~-FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
.++..|+||++.+.. +..|||||. ||..||..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 456789999999864 567899999 999999998 789999998753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.17 E-value=4.4e-07 Score=71.99 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred ccccccccccccCceeEEe-CCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRL-HCQHRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~L-PCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
..|+||++.|.+ . ..+ +|||+|...||.+||..+.+||+++..+....
T Consensus 4 ~~CpIs~~~m~d--P-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR--P-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS--E-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC--C-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 579999999974 2 456 89999999999999999889999999886554
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.73 E-value=2.1e-05 Score=68.75 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=36.9
Q ss_pred cccccccccccCceeEEeCCCCcchHHHHHHHHhc-CCCCCCCCCCCC
Q 008670 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-TNWCPICKAPAE 548 (557)
Q Consensus 502 ~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-k~SCPVCR~eV~ 548 (557)
-|.+|---+. ...+++||.|.||.+|+..|.++ .++||+|+..|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4788865554 35678899999999999999865 689999998774
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.59 E-value=3.2e-05 Score=76.56 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=41.7
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCC--CCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTN--WCPICKAPAESAP 551 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~--SCPVCR~eV~~s~ 551 (557)
....|.||.+....|..+ -.|+|.||..|+..|++.+. .||.|+...+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 477899999999876533 34999999999999998754 8999998766554
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.60 E-value=0.0042 Score=53.82 Aligned_cols=50 Identities=28% Similarity=0.545 Sum_probs=41.0
Q ss_pred CCCCccccccccccccCceeEEeCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQ-HRYHVLCIQQWLRLTNWCPICKAPAESAP 551 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCg-H~FH~~CI~~WL~~k~SCPVCR~eV~~s~ 551 (557)
.-.-..|..|+-++.. .+.|. |++|..|+...|.....||||+++++..-
T Consensus 25 ~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 4455689999977653 56675 99999999999999999999999887654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.74 E-value=0.012 Score=49.56 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=27.8
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHH
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~W 533 (557)
++..|.||+++|........+.|+|.|+..||..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45689999988654444556999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.23 E-value=0.054 Score=43.61 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=36.2
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC----CCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT----NWCPICKAPAESA 550 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k----~SCPVCR~eV~~s 550 (557)
......|.||.+. ++.+..-.|...||..|+.+.|... -.||.|.....+.
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccC
Confidence 4445679999753 4433333689999999999988753 2699998765443
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.41 E-value=0.2 Score=42.60 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=26.9
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHH
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~W 533 (557)
+....|..|.|| +.|..++....=-|+-.||..|+.+-
T Consensus 10 e~~~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 445678899998 55655552222237899999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.56 E-value=0.54 Score=36.89 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=33.4
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAP 546 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~e 546 (557)
....+..|.||... ++.+..-.|...||..|+..-|.. .-.||.|...
T Consensus 7 ~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34557789999863 443333358889999999986543 2369999764
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.35 E-value=0.42 Score=38.56 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAPA 547 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~eV 547 (557)
..+...|.||.........+..=.|.--||..||..-+.. .-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 4455679999877642222333358889999999765542 34699997654
No 79
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.16 E-value=0.44 Score=40.81 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=33.5
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc---CCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL---TNWCPICKAP 546 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~---k~SCPVCR~e 546 (557)
..+...| ||......+..|..=.|.--||..|+..=+.. ...||.|+..
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3444667 89887766654444468899999999763322 3479999743
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.04 E-value=0.5 Score=40.79 Aligned_cols=39 Identities=15% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR 535 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~ 535 (557)
...+..|.||.+.-...+.+..-.|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 446778999987643333244457999999999988764
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.64 E-value=0.41 Score=37.44 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=34.9
Q ss_pred CCCCccccccccccccCc-eeEEeCCCCcchHHHHHHHHh-----cCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGE-EVGRLHCQHRYHVLCIQQWLR-----LTNWCPICKAP 546 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~ge-eV~~LPCgH~FH~~CI~~WL~-----~k~SCPVCR~e 546 (557)
..+...|.||...|..+. .|..-.|..=||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345678999999885433 333346888999999875432 34679999764
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=76.52 E-value=0.93 Score=52.91 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CCCCCCccccccccccccCceeEEeCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQ-HRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCg-H~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
....+...|+|-++-+.+ ...+|.| |.|-..+|.+||..+.+||+=|.++...
T Consensus 886 ~~iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CCSCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cCCcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 556678899999998864 4478987 6999999999999999999999887654
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.50 E-value=0.44 Score=37.38 Aligned_cols=48 Identities=29% Similarity=0.667 Sum_probs=32.6
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAPA 547 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~eV 547 (557)
...+..|.||.+. ++.+..-.|...||..|+.+-|.. .-.||.|....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4456789999852 343333358889999999875543 22599997654
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.26 E-value=0.93 Score=33.86 Aligned_cols=44 Identities=20% Similarity=0.600 Sum_probs=29.4
Q ss_pred cccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCC
Q 008670 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 502 ~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
.|.||...-..++.+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899865433333333468899999999764443 225999965
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.67 E-value=2.5 Score=36.63 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCcccccccccc------ccCceeEEeCCCCcchHHHHHH
Q 008670 499 DDVKCSICQEEY------VVGEEVGRLHCQHRYHVLCIQQ 532 (557)
Q Consensus 499 ed~~CsICLEeF------~~geeV~~LPCgH~FH~~CI~~ 532 (557)
....|.+|+..- ..++-+..-.|+..||..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 355799998763 2223344457999999999953
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.12 E-value=2 Score=35.04 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCcccccccccccc-CceeEEeCCCCcchHHHHHHHHh-----cCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVV-GEEVGRLHCQHRYHVLCIQQWLR-----LTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~-geeV~~LPCgH~FH~~CI~~WL~-----~k~SCPVCR~eV~ 548 (557)
.+...| ||...+.. +..|..-.|..=||..||.--.. ....||.|+....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 344556 99988853 33333346888999999963322 3568999987643
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.00 E-value=0.53 Score=44.94 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=32.7
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcC----CCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLT----NWCPICKAPA 547 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k----~SCPVCR~eV 547 (557)
...+..|.||... |+-+.+=.|...||..|+.+.|... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456779999743 3322222588999999998877542 3699998754
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.51 E-value=0.86 Score=36.89 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHH---------hcCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWL---------RLTNWCPICKAPAES 549 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL---------~~k~SCPVCR~eV~~ 549 (557)
....| ||...+..+..|..-.|..=||..|+.--. ..+..||.|+..-.+
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 34556 899887644444444688999999995321 246789999765443
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.83 E-value=0.33 Score=37.28 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=31.6
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
...+..|.||... ++.+..-.|...||..|+.+-|.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4556789999874 443333468899999999875543 224888854
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.27 E-value=1.8 Score=36.74 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=34.7
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAPAES 549 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~eV~~ 549 (557)
....+..|.||... ++-+..-.|.-.||..|+.+=|.. .-.||.|......
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 35556789999864 443333357789999999876654 2259999865444
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=65.56 E-value=2.9 Score=32.60 Aligned_cols=51 Identities=31% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCCcccccccccccc--CceeEEeCCCCcchHHHHHHHHh-------cCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVV--GEEVGRLHCQHRYHVLCIQQWLR-------LTNWCPICKAPA 547 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~--geeV~~LPCgH~FH~~CI~~WL~-------~k~SCPVCR~eV 547 (557)
..++..|.||...+.. ++.+..-.|.-.||..|+.+-|. ..-.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3456789999987543 22222235889999999987442 123599996544
No 92
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.38 E-value=0.75 Score=38.65 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=31.7
Q ss_pred CCccccccccccccCceeEEe--CCCCcchHHHHHHHHhc--------CCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLRL--------TNWCPICKAP 546 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL~~--------k~SCPVCR~e 546 (557)
.+..|.||...-...+..+.+ .|...||..|+.+-|.. .-.|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 356899998764322222222 58899999999876541 2359999653
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.37 E-value=0.85 Score=36.19 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=33.2
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAPAE 548 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~eV~ 548 (557)
...+..|.||... ++.+..-.|...||..|+.+-|.. .-.||.|...-.
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 3456789999863 443333368889999999865543 225999965433
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.88 E-value=1 Score=34.89 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=31.1
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAP 546 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~e 546 (557)
.+..|.||... ++.+..-.|...||..|+.+-|.. .-.||.|...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999863 443444468899999999865543 2259988643
No 95
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.80 E-value=2 Score=35.13 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCCccccccccccccCceeEEe--CCCCcchHHHHHHHH---------hcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWL---------RLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL---------~~k~SCPVCR~eV~ 548 (557)
.+...| ||......+..|..= .|..-||..|+.--- -.+..||.|+..-.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 455678 898876555545444 688999999996321 13567999976543
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=58.73 E-value=7 Score=33.11 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=29.9
Q ss_pred CCCCccccccccccccCceeEEeC--CCCcchHHHHHHHHhc
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLH--CQHRYHVLCIQQWLRL 536 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LP--CgH~FH~~CI~~WL~~ 536 (557)
......|.+|.|.+++.- ..+-| =.|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 345678999999997654 33333 3799999999999986
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.13 E-value=1.6 Score=40.11 Aligned_cols=48 Identities=25% Similarity=0.565 Sum_probs=31.2
Q ss_pred CCCCccccccccccccCc-eeEEeCCCCcchHHHHHHHHh-----cCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGE-EVGRLHCQHRYHVLCIQQWLR-----LTNWCPICKA 545 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~ge-eV~~LPCgH~FH~~CI~~WL~-----~k~SCPVCR~ 545 (557)
..+...| ||...+..+. .+.+=.|..-||..|+.--.. ....||.|+.
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3456678 9998775333 333346888999999953221 2457999975
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.35 E-value=0.86 Score=38.64 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=33.8
Q ss_pred CCCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
....++..|.||...-..++.+..=-|...||..|+.+=|.. .-.||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345556789999876543333333368999999999854433 225999965
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.03 E-value=9.4 Score=35.01 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=32.4
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh----------c-CCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR----------L-TNWCPICKAP 546 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~----------~-k~SCPVCR~e 546 (557)
....+..|.||.+. |+-+-.=.|-..||..||.+-|. . .-.||+|...
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34557789999853 33222225889999999997663 1 2259999753
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.76 E-value=3.9 Score=34.87 Aligned_cols=47 Identities=28% Similarity=0.745 Sum_probs=29.6
Q ss_pred CCCccccccccccccCceeEEeC--CC-CcchHHHHHHHHhc----CCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLH--CQ-HRYHVLCIQQWLRL----TNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LP--Cg-H~FH~~CI~~WL~~----k~SCPVCR~eV~ 548 (557)
.+...| ||..... ++.|..=. |. .-||..||. |.. +-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345566 9988653 44332224 55 579999997 333 346999976543
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.04 E-value=2.4 Score=36.93 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=22.6
Q ss_pred ccccccccccc-------cCceeEEeCCCCcchHHHHHHH
Q 008670 501 VKCSICQEEYV-------VGEEVGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 501 ~~CsICLEeF~-------~geeV~~LPCgH~FH~~CI~~W 533 (557)
..|.||+..-. .++-+..-.|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 1222344469999999999865
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.48 E-value=3.7 Score=33.18 Aligned_cols=47 Identities=28% Similarity=0.744 Sum_probs=29.2
Q ss_pred CCCCccccccccccccCceeEEeC--CC-CcchHHHHHHHHhc----CCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLH--CQ-HRYHVLCIQQWLRL----TNWCPICKAPA 547 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LP--Cg-H~FH~~CI~~WL~~----k~SCPVCR~eV 547 (557)
..+...| ||..... ++.|..=. |. .-||..||. |.. +-.||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445567 8988643 44222223 55 589999997 433 34699997654
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=54.81 E-value=1.8 Score=37.44 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=33.6
Q ss_pred CccccccccccccCceeEEe--CCCCcchHHHHHHHHh----------cCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLR----------LTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL~----------~k~SCPVCR~eV~~ 549 (557)
...|.||...|......+.- .|..=||..|+.--.. .+..||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 45799999998654433322 4788899999853210 34579999876543
No 104
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=51.73 E-value=1.9 Score=35.56 Aligned_cols=44 Identities=20% Similarity=0.607 Sum_probs=27.1
Q ss_pred cccccccccccCceeEEeCCCCcchHHHHHHHHhc----C-CCCCCCCC
Q 008670 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----T-NWCPICKA 545 (557)
Q Consensus 502 ~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k-~SCPVCR~ 545 (557)
.|.||...-..++.+..=.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654333221222258889999999976654 2 35999975
No 105
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=51.67 E-value=1.8 Score=34.77 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHHh---cCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLR---LTNWCPICKA 545 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~---~k~SCPVCR~ 545 (557)
...+...| ||...+..+..|..-.|..=||..|+..-.. ....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44556678 9998775333344446888999999864321 2457998864
No 106
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.16 E-value=2.4 Score=41.77 Aligned_cols=46 Identities=20% Similarity=0.608 Sum_probs=26.4
Q ss_pred ccccccccccccCceeEEeCCCCcchHHHHHHHHhc---C-C-CCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL---T-N-WCPICKAP 546 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~---k-~-SCPVCR~e 546 (557)
..|.||...-..++.+.+=-|...||..|+.+=|.. . . .||.|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888764333332333358899999999965543 1 2 49999753
No 107
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.36 E-value=13 Score=39.03 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=31.9
Q ss_pred CccccccccccccCceeEEeCCCCc--chHHHHHHHHhcC--CCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHR--YHVLCIQQWLRLT--NWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~--FH~~CI~~WL~~k--~SCPVCR~eV~~ 549 (557)
...|+|-+..+. ..++-..|.|+ |-..-+.++..+. -.||||...+..
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 468998777765 35677889998 5554444443332 359999887644
No 108
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=48.09 E-value=15 Score=30.77 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCCCCccccccccccc-cCce-eEEeCCCCcchHHHHHHHHhc--CCCCCCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYV-VGEE-VGRLHCQHRYHVLCIQQWLRL--TNWCPICKAPAES 549 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~-~gee-V~~LPCgH~FH~~CI~~WL~~--k~SCPVCR~eV~~ 549 (557)
..+++..|.||...-. ..+. +..-.|.-.||..|+..-+.- .-.||.|......
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3456789999987542 2222 222258889999999864321 2259999765443
No 109
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=47.81 E-value=5.7 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred cccccccccccCce-eEEe-CCCCcchHHHHHHHH----hcCCCCCCCC
Q 008670 502 KCSICQEEYVVGEE-VGRL-HCQHRYHVLCIQQWL----RLTNWCPICK 544 (557)
Q Consensus 502 ~CsICLEeF~~gee-V~~L-PCgH~FH~~CI~~WL----~~k~SCPVCR 544 (557)
.|.||...+..++. |..- .|..=||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 58899888854443 2223 477789999976322 2567899995
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.74 E-value=12 Score=29.69 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCCccccccccccccCcee-EEe-CCCCcchHHHHHH
Q 008670 497 NNDDVKCSICQEEYVVGEEV-GRL-HCQHRYHVLCIQQ 532 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV-~~L-PCgH~FH~~CI~~ 532 (557)
.+....|.+|...|..++.. ..- .|.--||..|+.-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 45567899999998665543 333 6888999999853
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.51 E-value=20 Score=31.82 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=25.3
Q ss_pred CCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 499 DDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 499 ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
+...|.+|...|..-.. -..-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45689999999965432 233469999999997554
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=47.24 E-value=4.6 Score=34.96 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=29.0
Q ss_pred cccccccccccCcee-EEeCCCCcchHHHHHHHHhc----CCCCCCCCC
Q 008670 502 KCSICQEEYVVGEEV-GRLHCQHRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 502 ~CsICLEeF~~geeV-~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
.|.||.+.-...+.+ ..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888642222222 22358999999999876654 236999975
No 113
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.67 E-value=16 Score=38.21 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=32.6
Q ss_pred CccccccccccccCceeEEeCCCCc--chHHHHHHHHhcC--CCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHR--YHVLCIQQWLRLT--NWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~--FH~~CI~~WL~~k--~SCPVCR~eV~~ 549 (557)
...|+|-+..+. ..++-..|.|. |-..-+.++..+. -.||+|...+..
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 457998777764 34677789998 6655554444432 359999987754
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.19 E-value=1.3 Score=35.51 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCCccccccccccccCc-eeEEeCCCCcchHHHHHHHH----hcCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGE-EVGRLHCQHRYHVLCIQQWL----RLTNWCPICKAPAE 548 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~ge-eV~~LPCgH~FH~~CI~~WL----~~k~SCPVCR~eV~ 548 (557)
......| ||...+..++ .|..-.|..=||..|+.--. ..+..||.|+..-.
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 3445678 7988775554 33334688889999986432 23457999976543
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.50 E-value=3.7 Score=33.74 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=29.1
Q ss_pred ccccccccccccCceeEEeCCCCcchHHHHHHHHhc-----CCCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-----TNWCPICKA 545 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-----k~SCPVCR~ 545 (557)
..|.||...-..++.+..=.|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899864333332322358899999999865543 125999964
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=43.37 E-value=4.2 Score=32.71 Aligned_cols=45 Identities=20% Similarity=0.588 Sum_probs=27.6
Q ss_pred cccccccccccCceeEEeCCCCcchHHHHHHHHhc-----CCCCCCCCCC
Q 008670 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL-----TNWCPICKAP 546 (557)
Q Consensus 502 ~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~-----k~SCPVCR~e 546 (557)
.|.||...-..++.+..=.|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677754322332222258899999999865543 2259999753
No 117
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.31 E-value=11 Score=30.70 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=26.8
Q ss_pred CCCCCccccccccccccCceeEEeCC-CCcchHHHHHHH
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHC-QHRYHVLCIQQW 533 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPC-gH~FH~~CI~~W 533 (557)
..++..-|.||.++ ..++.+.| +-+||..|..+.
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 45567789999988 34788999 789999996654
No 118
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.65 E-value=12 Score=29.36 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCccccccccccccCceeEEeCCCCcchH-HHHHHHHhcCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHV-LCIQQWLRLTNWCPICKA 545 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~-~CI~~WL~~k~SCPVCR~ 545 (557)
+-..|.+|...+..+. . ...=+..||. .|..+- ....|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 3456677766665432 1 1223445555 455332 2334666643
No 119
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.48 E-value=13 Score=29.01 Aligned_cols=41 Identities=22% Similarity=0.527 Sum_probs=30.3
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
...|..|.+.+..++.+. .-+..||..| ..|-.|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 468999999888666443 4578899877 4588898887643
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.10 E-value=43 Score=28.73 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCccccccccccccCce----eEEeCCCCcchHHHHHHHHh-cCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEE----VGRLHCQHRYHVLCIQQWLR-LTNWCPICKAPAE 548 (557)
Q Consensus 499 ed~~CsICLEeF~~gee----V~~LPCgH~FH~~CI~~WL~-~k~SCPVCR~eV~ 548 (557)
....|.||-++...... |...-|+--.|..|..--.+ .+..||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45689999999743332 23345777889999876554 3678999998775
No 121
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.95 E-value=20 Score=28.92 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCCCcccccccccc-ccCcee-EEeCCCCcchHHHHHHHHhc--CCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEY-VVGEEV-GRLHCQHRYHVLCIQQWLRL--TNWCPICKA 545 (557)
Q Consensus 496 ~~~ed~~CsICLEeF-~~geeV-~~LPCgH~FH~~CI~~WL~~--k~SCPVCR~ 545 (557)
....+..|.||.+.- ...+.+ ..=.|.-.||..|+..-+.- .-.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 455678899998764 222222 22258899999999754211 224888854
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.91 E-value=23 Score=31.96 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=30.5
Q ss_pred CCCCCccccccccccccCceeEEeCCCCcchHHHHHHHH------hc-----CCCCCCCCC
Q 008670 496 GNNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWL------RL-----TNWCPICKA 545 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL------~~-----k~SCPVCR~ 545 (557)
....+..|.||.+. |+-+-.=.|-..||..||.+-| .. .-.|++|..
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556789999854 3311112588999999999752 21 236999964
No 123
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=37.90 E-value=2 Score=34.22 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=28.0
Q ss_pred CCccccccccccccCceeEEe--CCCCcchHHHHHHHH---h-----cCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWL---R-----LTNWCPICKA 545 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL---~-----~k~SCPVCR~ 545 (557)
+...| ||......+..|..= .|..=||..|+.--- . .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34566 897766555533322 377789999983210 0 1457999974
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.38 E-value=4.3 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=28.6
Q ss_pred cccccccccccCceeEEeCCCCcchHHHHHHHHhc----CCCCCCCCCCC
Q 008670 502 KCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRL----TNWCPICKAPA 547 (557)
Q Consensus 502 ~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~----k~SCPVCR~eV 547 (557)
.|.||...-.....+..-.|...||..|+.+=|.. .-.||.|....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57777655332222222358899999999865543 23599886543
No 125
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.82 E-value=12 Score=33.77 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCccccccccccc-c-CceeEEeCCCCcchHHHHH
Q 008670 499 DDVKCSICQEEYV-V-GEEVGRLHCQHRYHVLCIQ 531 (557)
Q Consensus 499 ed~~CsICLEeF~-~-geeV~~LPCgH~FH~~CI~ 531 (557)
.+..|.+|+..|. . +-.....-|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999993 2 2234556799999988854
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.32 E-value=4.8 Score=31.35 Aligned_cols=43 Identities=28% Similarity=0.786 Sum_probs=25.9
Q ss_pred CCccccccccccccCceeEEeC--CC-CcchHHHHHHHHhc----CCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLH--CQ-HRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LP--Cg-H~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
+...| ||..... ++.+..=. |. .-||..||. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 9987642 43222223 44 579999997 443 336998864
No 127
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.76 E-value=26 Score=27.99 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=30.0
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
.....|.-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 345689999998876664433 477899877 45888887775
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=33.61 E-value=5.3 Score=31.12 Aligned_cols=43 Identities=28% Similarity=0.784 Sum_probs=26.9
Q ss_pred CCccccccccccccCceeEEeC--CC-CcchHHHHHHHHhc----CCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLH--CQ-HRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LP--Cg-H~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
+..-| ||.... .|+.+..=. |. .-||..||. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 998865 344222224 65 689999997 333 336998864
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.36 E-value=19 Score=31.45 Aligned_cols=48 Identities=29% Similarity=0.498 Sum_probs=29.8
Q ss_pred CCCCccccccccccccCceeEEe--CCCCcchHHHHHHHHhc----CCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLRL----TNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL~~----k~SCPVCR~eV~~ 549 (557)
...+..|.||.+ .|+.+..= .|-..||..|+. |.. .-.||-|.-.+-.
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 456678999983 23322222 377899999997 443 1248877654443
No 130
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.37 E-value=36 Score=26.76 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=30.4
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAESA 550 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~s 550 (557)
...|..|.+.+..++.++ ..-+..||..|. .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 358999999887766543 335788998773 688888877643
No 131
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.25 E-value=39 Score=25.80 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=4.7
Q ss_pred cccccccccc
Q 008670 502 KCSICQEEYV 511 (557)
Q Consensus 502 ~CsICLEeF~ 511 (557)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4555544443
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.19 E-value=33 Score=26.17 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=26.7
Q ss_pred ccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
..|..|.+.+...+.++. .-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCC
Confidence 478888888776554332 25677887763 57788777654
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.81 E-value=34 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCCCCCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 495 SGNNDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
..+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345566789999999965432 223469999999997654
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.40 E-value=31 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.517 Sum_probs=26.7
Q ss_pred CCCCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 497 NNDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4455689999999975432 223469999999997654
No 135
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.32 E-value=11 Score=38.72 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCccccccccccccCc-eeEEeCCCCcchHHHHHHHHhc-------CCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGE-EVGRLHCQHRYHVLCIQQWLRL-------TNWCPICKAPA 547 (557)
Q Consensus 499 ed~~CsICLEeF~~ge-eV~~LPCgH~FH~~CI~~WL~~-------k~SCPVCR~eV 547 (557)
+...|.+|...|..-. ...+-.||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4567999999986432 2334569999999999876522 34577775443
No 136
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.14 E-value=40 Score=25.69 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=26.0
Q ss_pred ccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
..|..|.+.+..++++ +..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 4788888877654433 2335778887763 57777776654
No 137
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.06 E-value=32 Score=28.69 Aligned_cols=38 Identities=13% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCCCCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 496 GNNDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 496 ~~~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
...+...|.+|...|..-.. -..-.||++||..|...+
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34556689999999965432 233469999999997654
No 138
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.93 E-value=37 Score=27.07 Aligned_cols=43 Identities=26% Similarity=0.484 Sum_probs=29.6
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
......|..|.+.+...+.+. .-+..||..|. .|-.|+..|..
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 334568999999887666543 35778998883 46777666544
No 139
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.78 E-value=37 Score=31.76 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=32.7
Q ss_pred CCCCCCccccccccccccCceeEEe---CCCCcchHHHHHHHHhc---------C-CCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRL---HCQHRYHVLCIQQWLRL---------T-NWCPICKA 545 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~L---PCgH~FH~~CI~~WL~~---------k-~SCPVCR~ 545 (557)
..+..+..|.||-+. .++..- .|...||..||+.++.. . =.|=+|.-
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 345567899999853 333332 48899999999999754 1 24888864
No 140
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.19 E-value=29 Score=28.95 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCCccccccccccccCce-eEEeCCCCcchHHHHHHHH
Q 008670 498 NDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQWL 534 (557)
Q Consensus 498 ~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~WL 534 (557)
.+...|.+|...|..-.. ...-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345689999999965432 3334699999999987653
No 141
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.78 E-value=46 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=29.3
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
.....|.-|.+.+...+.+.. .-+..||..| ..|-.|...+..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCC
Confidence 345689999988875554432 2577888877 357788777654
No 142
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.78 E-value=20 Score=33.35 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=14.8
Q ss_pred eEEeCCCCcchHHHHHHHHhcCCCCCCCCCC
Q 008670 516 VGRLHCQHRYHVLCIQQWLRLTNWCPICKAP 546 (557)
Q Consensus 516 V~~LPCgH~FH~~CI~~WL~~k~SCPVCR~e 546 (557)
..+..|||+|-. ..-..||+|.++
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 344557777752 223489999753
No 143
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.32 E-value=6.7 Score=35.00 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCccccccccccccCce-eEEeCCCCcchHHHHHHHHhcCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQWLRLTNWCPICK 544 (557)
Q Consensus 498 ~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~WL~~k~SCPVCR 544 (557)
.+...|.+|...|..-.. -..-.||.+||..|....+.....|-.|-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 344689999999965332 33457999999999877665566676663
No 144
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=26.73 E-value=11 Score=30.26 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCccccccccccccC-ceeEEeCCCCcchHHHHHHHHh-----cCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVG-EEVGRLHCQHRYHVLCIQQWLR-----LTNWCPICKAP 546 (557)
Q Consensus 499 ed~~CsICLEeF~~g-eeV~~LPCgH~FH~~CI~~WL~-----~k~SCPVCR~e 546 (557)
....-.||...+..+ ..|..-.|.-=||..||.---. ....||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344555998877533 3333345888999999964321 24579999754
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.51 E-value=25 Score=33.47 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=25.5
Q ss_pred CCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 499 DDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 499 ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
++..|.+|...|..-.. -.+-.||++||..|...+
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35799999999964432 233469999999997654
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.48 E-value=28 Score=33.60 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 499 DDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 499 ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
++..|.+|...|..-.. -.+-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35689999999975432 334469999999997654
No 147
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.24 E-value=16 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=20.5
Q ss_pred ccccccccccccCceeEEeCCCCcchHHH
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLC 529 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~C 529 (557)
..|+.|....-..+.+. -=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 47999999877666443 3578999988
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.96 E-value=25 Score=30.78 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=10.8
Q ss_pred chHHHHHHHHhc
Q 008670 525 YHVLCIQQWLRL 536 (557)
Q Consensus 525 FH~~CI~~WL~~ 536 (557)
||.+|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 149
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.80 E-value=25 Score=30.70 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=10.8
Q ss_pred chHHHHHHHHhc
Q 008670 525 YHVLCIQQWLRL 536 (557)
Q Consensus 525 FH~~CI~~WL~~ 536 (557)
||.+|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 150
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.69 E-value=40 Score=26.85 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=23.4
Q ss_pred ccccccccccccCce-eEEeCCCCcchHHHHHH
Q 008670 501 VKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQ 532 (557)
Q Consensus 501 ~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~ 532 (557)
..|.+|...|..-.. -..-.||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999965332 22336999999999754
No 151
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.59 E-value=42 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCCCCccccccccccccCce-eEEeCCCCcchHHHHHHH
Q 008670 495 SGNNDDVKCSICQEEYVVGEE-VGRLHCQHRYHVLCIQQW 533 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~gee-V~~LPCgH~FH~~CI~~W 533 (557)
..+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 334556789999999964332 223469999999996543
No 152
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.41 E-value=22 Score=27.99 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=27.6
Q ss_pred ccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCC
Q 008670 501 VKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPIC 543 (557)
Q Consensus 501 ~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVC 543 (557)
..|--|+..|........-.|++.|+.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998532212233599999999943222233479988
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.76 E-value=60 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=26.7
Q ss_pred Ccccccccccccc--CceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVV--GEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 500 d~~CsICLEeF~~--geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
...|..|-+.+.. .+++ +..-+..||.+|. .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 3578888888764 3333 2336788888773 5788877765
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.61 E-value=29 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=30.1
Q ss_pred CCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
....|..|.+.+...+.+.. .=+..||..|. .|-.|...+..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 34589999999877665433 35678998875 58888877654
No 155
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.95 E-value=15 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCC
Q 008670 537 TNWCPICKAPAES 549 (557)
Q Consensus 537 k~SCPVCR~eV~~ 549 (557)
+..||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468999876654
No 156
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.46 E-value=55 Score=26.43 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=25.0
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
...|..|.+.+...+.+ ..-+..||..|. .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCC
Confidence 45788887777655532 346677777763 46666665544
No 157
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=23.27 E-value=42 Score=35.47 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCCCCccccccccccccCceeEEe--CCCCcchHHHHHHHHhc----------CCCCCCCCCC
Q 008670 495 SGNNDDVKCSICQEEYVVGEEVGRL--HCQHRYHVLCIQQWLRL----------TNWCPICKAP 546 (557)
Q Consensus 495 ~~~~ed~~CsICLEeF~~geeV~~L--PCgH~FH~~CI~~WL~~----------k~SCPVCR~e 546 (557)
..+..+..|.||-+. ++-+.+= .|...||..||..+|.. +-.|=+|.-.
T Consensus 88 D~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 88 DDDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345567889999864 3333333 58999999999999832 2258888643
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.09 E-value=11 Score=29.72 Aligned_cols=43 Identities=28% Similarity=0.823 Sum_probs=26.5
Q ss_pred CCccccccccccccCceeEEeC--CC-CcchHHHHHHHHhc----CCCCCCCCC
Q 008670 499 DDVKCSICQEEYVVGEEVGRLH--CQ-HRYHVLCIQQWLRL----TNWCPICKA 545 (557)
Q Consensus 499 ed~~CsICLEeF~~geeV~~LP--Cg-H~FH~~CI~~WL~~----k~SCPVCR~ 545 (557)
+...| ||.... .++.+..=. |. .-||..||. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34556 998864 344222224 44 789999997 332 346999965
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.58 E-value=57 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
.....|..|-+.+. ++.+ ..-+..||..|. .|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCC
Confidence 34568999988874 3322 345788998773 68888887764
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.53 E-value=29 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICK 544 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR 544 (557)
..-..|.+|...+..++... +.=+..||..|..+++..+ |..|.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~~--~~~~~ 77 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKIN--GGSGG 77 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHHH--TCCCC
T ss_pred cccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhccc--cCCCC
Confidence 34567888888876555433 3356788888887776532 34443
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=71 Score=25.62 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=30.4
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
......|..|.+.+.. + + +..-+..||.+| ..|-.|...|..
T Consensus 22 ~~~~~~C~~C~~~I~~-~-~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-A-V-VKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCSCCBCTTTCCBCCS-C-C-EESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCcCCCcccCCCEecc-c-E-EEECCceECccC--------CEecCCCCCCCC
Confidence 3455789999988764 2 3 335778999887 458889887764
No 162
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.30 E-value=29 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCcccccccccc--ccCceeEEeCCCCcchHHHH
Q 008670 499 DDVKCSICQEEY--VVGEEVGRLHCQHRYHVLCI 530 (557)
Q Consensus 499 ed~~CsICLEeF--~~geeV~~LPCgH~FH~~CI 530 (557)
.+..|.+|+..| ..+-...+.-|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999986 33334556679999999997
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.89 E-value=55 Score=25.86 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=28.0
Q ss_pred CCCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 497 NNDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 497 ~~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
......|.-|-+.+. ++. +..-+..||..| ..|-.|+..|..
T Consensus 12 ~~~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQP--LIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCC--CCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred ccCCCCCccCCCEec-ceE--EEECcceeCCCC--------CEeCCCCCccCC
Confidence 334567999988876 332 234577888877 468888777654
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=67 Score=24.36 Aligned_cols=39 Identities=23% Similarity=0.571 Sum_probs=22.1
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
...|..|-+.+. ++ + +..-+..||.+|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~-~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFII-GR-V-IKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCC-SC-C-EEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEec-ce-E-EEECcccccccCC--------EeCCCCCcCCC
Confidence 346777776665 22 2 2234566777663 46667666544
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.52 E-value=79 Score=24.50 Aligned_cols=40 Identities=18% Similarity=0.428 Sum_probs=26.7
Q ss_pred Ccccccccccccc--CceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVV--GEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 500 d~~CsICLEeF~~--geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
...|..|.+.+.. ..++ +..-+..||.+|. .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 3478999888764 2233 3346778998874 5777877665
No 166
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.32 E-value=56 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.8
Q ss_pred CCCccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 008670 498 NDDVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAE 548 (557)
Q Consensus 498 ~ed~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~ 548 (557)
.....|..|-+.+.. + + +..-+..||..|. .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~-~-~-~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-V-F-VKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-S-C-EECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-c-E-EEECcceeCcCcC--------eeCCCCCCCC
Confidence 445689999888764 3 2 3446788998874 5788877653
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.10 E-value=85 Score=23.70 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=25.0
Q ss_pred CccccccccccccCceeEEeCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 008670 500 DVKCSICQEEYVVGEEVGRLHCQHRYHVLCIQQWLRLTNWCPICKAPAES 549 (557)
Q Consensus 500 d~~CsICLEeF~~geeV~~LPCgH~FH~~CI~~WL~~k~SCPVCR~eV~~ 549 (557)
...|..|.+.+.. +. +..-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 3468888877753 32 3345778887763 57778777643
Done!