BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008671
(557 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 567 bits (1461), Expect = e-161, Method: Compositional matrix adjust.
Identities = 312/550 (56%), Positives = 402/550 (73%), Gaps = 5/550 (0%)
Query: 1 MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
M STGEPDRKRRHFSSISP+ AA KK PFF S E K+DTAVLQFQN KL QKLE Q+
Sbjct: 1 MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLKLSQKLEAQQ 60
Query: 59 VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L +ESCS+R +SS+G R ++
Sbjct: 61 VECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNKE 119
Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
+ +P +D F++RL+ETGATESSS++ C NQMEE+ + + N++AA ++L
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDLR 178
Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
LK LY VL+ +L Q A S L+SE+K+ R L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238
Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
AK + L R++GELE V EL++CN L+ALRAERD T GAFFPVL+LGNK DR RD
Sbjct: 239 AKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298
Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
+QRDL+DME+V KEL AS +L +LK LH+ R K+L ++ NLQN KSV+C+SSS+A L
Sbjct: 299 KQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQACL 358
Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
S+K+QLEKSK VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A
Sbjct: 359 SLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMAS 418
Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
L EIQKQ+DEK RI+ RL SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE A
Sbjct: 419 LDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKETA 478
Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
IH LRADV SL+ VL RK KE E L SAD +++ L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFLD 538
Query: 538 MYRRESTDSR 547
MY+RESTD+R
Sbjct: 539 MYKRESTDAR 548
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
japonica GN=BRE1A PE=2 SV=3
Length = 884
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/558 (44%), Positives = 359/558 (64%), Gaps = 11/558 (1%)
Query: 1 MGSTGEPDRKRRHFSSISPTAAT----AKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLET 56
MGSTGEPDRKRR SS++P AK+ P+SE+KK+D VL+++NQKL ++LE
Sbjct: 1 MGSTGEPDRKRRLSSSVAPGGGAPVSPAKRLAVAPTSEDKKLDFTVLKYKNQKLSEQLEA 60
Query: 57 QKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSM-RARESSNGQESRCL 115
K EY ALENKFA LKE+Q+ ++ TL +VN SWE+L+ DL+S S ++ ++ S
Sbjct: 61 HKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKSGSPNSSPGSGHN 120
Query: 116 SIIEDVTPHPSHDAFLSRLMETGATESSSA-DNCPNQMEEDRETGIPRTKNIVSNILAAV 174
++ +D T P L L+E+GATESS C + D T N + +I
Sbjct: 121 NVQKDGTCAPIERDTLRSLVESGATESSGCLPGC--HLGSDAPPLHLSTANALGDIFFPS 178
Query: 175 DNLWHLKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRL--ALMDLHLKHKSLTRELQ 231
+L A L L ++ SKQ S++ + AL +L LKHK L + Q
Sbjct: 179 SDLLQANEECALAALTKLPENDRSKQLQSTSSNLLSSLNNVVQALSNLQLKHKQLAEDYQ 238
Query: 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291
+++D A+ +A+ RLK EL SA ELEE N KLAAL+A+RD T+GA P LGNK++
Sbjct: 239 NQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRDNTQGARIPYPTLGNKNMP 298
Query: 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS 351
D+VRD+QR+++D+E+ HKEL + S +L+E+K LH+ RI++L ++ QN L K +
Sbjct: 299 EDKVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEILNKIATFQNILMDFKSIR 358
Query: 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVT 411
SSKAF V ++L+KS++E+ YQ L EKLQV+KD W+E + N+K+DL ++ R S
Sbjct: 359 SSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVSTYC 418
Query: 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471
+S IADL +IQK DEKN + ++LEEASREPGR ++I +F+ALVSS P +M AMQ +++
Sbjct: 419 ESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMT 478
Query: 472 KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE 531
K+KEA+L+++ LRA+V SL+ +L RK ++ E SA ++I +LQ+++ DL +N E
Sbjct: 479 KHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKE 538
Query: 532 LKLILDMYRRESTDSRFV 549
LKL DMY+RESTDSR +
Sbjct: 539 LKLFADMYKRESTDSREI 556
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
indica GN=BRE1A PE=3 SV=2
Length = 884
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/558 (44%), Positives = 358/558 (64%), Gaps = 11/558 (1%)
Query: 1 MGSTGEPDRKRRHFSSISPTAAT----AKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLET 56
MGSTGEPDRKRR SS++P AK+ P+SE+KK+D VL+++NQKL ++LE
Sbjct: 1 MGSTGEPDRKRRLSSSVAPGGGAPVSPAKRLAVAPTSEDKKLDFTVLKYKNQKLSEQLEA 60
Query: 57 QKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSM-RARESSNGQESRCL 115
K EY ALENKFA LKE+Q+ ++ TL +VN SWE+L+ DL+S S ++ ++ S
Sbjct: 61 HKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKSGSPNSSPGSGHN 120
Query: 116 SIIEDVTPHPSHDAFLSRLMETGATESSSA-DNCPNQMEEDRETGIPRTKNIVSNILAAV 174
++ +D T P L L+E+GATESS C + D T N + +I
Sbjct: 121 NVQKDGTCAPIERDTLRSLVESGATESSGCLPGC--HLGSDAPPLHLSTANALGDIFFPS 178
Query: 175 DNLWHLKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRL--ALMDLHLKHKSLTRELQ 231
+L A L L ++ SKQ S++ + AL +L LKHK L + Q
Sbjct: 179 SDLLQANEECALAALTKLPENDRSKQLQSTSSNLLSSLNNVVQALSNLQLKHKQLAEDYQ 238
Query: 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291
+++D A+ +A+ RLK EL SA ELEE N KLAAL+A+RD T+GA P LGNK +
Sbjct: 239 NQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRDNTQGARIPYPTLGNKSMP 298
Query: 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS 351
D+VRD+QR+++D+E+ HKEL + S +L+E+K LH+ RI++L ++ QN L K +
Sbjct: 299 EDKVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEILNKIATFQNILMDFKSIR 358
Query: 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVT 411
SSKAF V ++L+KS++E+ YQ L EKLQV+KD W+E + N+K+DL ++ R S
Sbjct: 359 SSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVSTYC 418
Query: 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471
+S IADL +IQK DEKN + ++LEEASREPGR ++I +F+ALVSS P +M AMQ +++
Sbjct: 419 ESSIADLKKDIQKLRDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMT 478
Query: 472 KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE 531
K+KEA+L+++ LRA+V SL+ +L RK ++ E SA ++I +LQ+++ DL +N E
Sbjct: 479 KHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKE 538
Query: 532 LKLILDMYRRESTDSRFV 549
LKL DMY+RESTDSR +
Sbjct: 539 LKLFADMYKRESTDSREI 556
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 160/543 (29%), Positives = 274/543 (50%), Gaps = 49/543 (9%)
Query: 38 IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97
+D A LQ++NQKLVQ+LE QK + ALE KF +L++ Q YD+TL +NK W +LI DL
Sbjct: 1 MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60
Query: 98 SCSMRARESSNGQES--RCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEED 155
+RA NG ++ E + PS + FL RL+ ++ N N
Sbjct: 61 LLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLL--------NSRNFRN----- 107
Query: 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSN----------- 204
N S++ V+ L+ ++K LQ+ + Q+A S
Sbjct: 108 ---------NDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNS 158
Query: 205 --------------LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGE 250
L+ V NLR A+ ++ KH+ E+++ ++ +++ ++ L GE
Sbjct: 159 SEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGE 218
Query: 251 LESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310
LE ++ ELEE KLA L+ + N N V+ D+ D+ RD++ +
Sbjct: 219 LEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVE 278
Query: 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEV 370
E A+++L EL + + + +QL ++Q+ LK + +SK + + +QL +E+
Sbjct: 279 EAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEI 338
Query: 371 FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430
+Y+ L E LQ EKD L +E E+ K + VD ++S +KI DL EIQK + EKN
Sbjct: 339 ERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKN 398
Query: 431 RIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490
+E++ EEA ++ G+K+ E + +S ++M + Q+++ K+AA + LR + L
Sbjct: 399 DLEIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYL 458
Query: 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVN 550
+L +K+ E + + QV EI L+A+++ L EL+ I+DM +E ++SR ++
Sbjct: 459 RTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQELQFIVDMLGKECSESRAIS 518
Query: 551 LLE 553
+E
Sbjct: 519 EIE 521
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 160/543 (29%), Positives = 274/543 (50%), Gaps = 49/543 (9%)
Query: 38 IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97
+D A LQ++NQKLVQ+LE QK + ALE KF +L++ Q YD+TL +NK W +LI DL
Sbjct: 1 MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60
Query: 98 SCSMRARESSNGQES--RCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEED 155
+RA NG ++ E + PS + FL RL+ ++ N N
Sbjct: 61 LLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLL--------NSRNFRN----- 107
Query: 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSN----------- 204
N S++ V+ L+ ++K LQ+ + Q+A S
Sbjct: 108 ---------NDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNS 158
Query: 205 --------------LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGE 250
L+ V NLR A+ ++ KH+ E+++ ++ +++ ++ L GE
Sbjct: 159 SEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGE 218
Query: 251 LESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310
LE ++ ELEE KLA L+ + N N V+ D+ D+ RD++ +
Sbjct: 219 LEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVE 278
Query: 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEV 370
E A+++L EL + + + +QL ++Q+ LK + +SK + + +QL +E+
Sbjct: 279 EAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEI 338
Query: 371 FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430
+Y+ L E LQ EKD L +E E+ K + VD ++S +KI DL EIQK + EKN
Sbjct: 339 ERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKN 398
Query: 431 RIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490
+E++ EEA ++ G+K+ E + +S ++M + Q+++ K+AA + LR + L
Sbjct: 399 DLEIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYL 458
Query: 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVN 550
+L +K+ E + + QV EI L+A+++ L EL+ I+DM +E ++SR ++
Sbjct: 459 RTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQELQFIVDMLGKECSESRAIS 518
Query: 551 LLE 553
+E
Sbjct: 519 EIE 521
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 155/573 (27%), Positives = 285/573 (49%), Gaps = 36/573 (6%)
Query: 4 TGEPDRKRRHF-SSISPTAATAKKNPFFPSSE-------------------EKKIDTAVL 43
+ EP +K+ H S+SP + +P P ++ E +D VL
Sbjct: 6 SDEPMQKKPHLLDSVSPNSMARNSSPSHPIAKSVSFFDCDFSLLCLRLVDYEIDVDATVL 65
Query: 44 QFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRA 103
Q QNQKLVQ+L+ QK + +E+K +L+ Q YD L VN+ W +L+ DL +RA
Sbjct: 66 QLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISVNQLWNQLVDDLILLGVRA 125
Query: 104 RESSNGQESRCLSIIED--VTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIP 161
+N + L I++ V P + + FL RL++ + ++S +D ++EE +
Sbjct: 126 --GANQEALNYLDIVDKKRVPPCAADETFLCRLLQVDSLDTSKSDEVVRKVEE----ALA 179
Query: 162 RTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQS-------EVKNLRL 214
+ ++ +N + ++ + L S + A+ L S E KNLR
Sbjct: 180 LRHSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSINDLMKEESKNLRE 239
Query: 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274
+ LH++HK + ++Q+ + D+++L LKG+LE ELEE KL L+ ++D
Sbjct: 240 MIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQKDA 299
Query: 275 TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVL 334
+ N ++ ++ D+ + LR+++ E+ A +L EL+ + + +
Sbjct: 300 ACEGHVTSPAIANGSLSPEKPVDKTK-LRELKDSIDEIKIMAEGRLSELQASQEYNLSLS 358
Query: 335 QQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394
+Q +++N LK + + SS+ + + +++ +E+ +Y+ L E +Q E+ + R+ EL
Sbjct: 359 RQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAERSFVMRRDKEL 418
Query: 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRA 454
N++ + ++ + S+I L ++Q I EKN +E+ EEA ++ R++I +EF A
Sbjct: 419 NLRAESLEAANHKTTTVGSRIEVLEKKLQSCIIEKNGLELETEEAIQDSERQDIKSEFIA 478
Query: 455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAE 514
+ S+ ++M M+ QL ++K+ A D LR SL L K E + L A Q+AE
Sbjct: 479 MASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNKADEQKGLEDKCAKQMAE 538
Query: 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSR 547
I L+A+++ L L+L+ + + RE D R
Sbjct: 539 IKSLKALIEKLLKEKLQLQNLASICTRECNDDR 571
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2
SV=2
Length = 1001
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G +G P++K + T + S+EE +D+ VLQF+N+KL ++LE ++
Sbjct: 13 GGSGPPEKKMNREEKTTTTLIEPIRLGGISSTEE--MDSKVLQFKNKKLAERLEQRQACE 70
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLES---CSMRARESSNGQE-SRCL-S 116
L + +L++RQ D+TL +VN+ W +L +E+ C RE S+G E C
Sbjct: 71 DELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLQCYENQRELSSGTEVPGCQEG 130
Query: 117 IIEDVTPHP 125
+ DV P P
Sbjct: 131 LTRDVIPRP 139
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40
PE=1 SV=1
Length = 1002
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G +G P++K + T + S+EE +D+ VLQF+N+KL ++LE ++
Sbjct: 13 GGSGPPEKKLNREEKTTTTLIEPIRLGGISSTEE--MDSKVLQFKNKKLAERLEQRQACE 70
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLES---CSMRARE-SSNGQE-SRCL- 115
L + +L++RQ D+TL +VN+ W +L +E+ C RE SS+G E C
Sbjct: 71 DELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLQCYENQRELSSSGTEVPGCQE 130
Query: 116 SIIEDVTP 123
+ DV P
Sbjct: 131 GLTRDVIP 138
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
+ G+P K+ HF + P S +++D VL+FQN+KL Q++E +
Sbjct: 19 AAAGQPPIKKVHFEP----------HLIGPVSTLEEMDIKVLEFQNKKLAQRIEQRMRTE 68
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDL 96
+ L ++ QL++RQ D+ L VVN+ W +L D+
Sbjct: 69 AELRHRIEQLEKRQTQDDAVLNVVNRYWNQLNEDI 103
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G +G P++K + T + S+EE ID VLQF+N+KL ++LE ++
Sbjct: 13 GGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEE--IDLKVLQFKNKKLAERLEQRQACE 70
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLES 98
L + +L++RQ D+TL +VN+ W +L +E+
Sbjct: 71 DELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEA 107
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1
SV=4
Length = 1001
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G +G P++K + T + S+EE +D VLQF+N+KL ++LE ++
Sbjct: 13 GGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEE--MDLKVLQFKNKKLAERLEQRQACE 70
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSN 108
L + +L++RQ D+TL +VN+ W +L +E+ +R ES
Sbjct: 71 DELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEAL-LRCHESQG 116
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2
SV=1
Length = 1001
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G +G P++K + T + S+EE +D VLQF+N+KL ++LE ++
Sbjct: 13 GGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEE--MDLKVLQFKNKKLAERLEQRQACE 70
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSN 108
L + +L++RQ D+TL +VN+ W +L +E+ +R ES
Sbjct: 71 DELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEAL-LRCHESQG 116
>sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 OS=Caenorhabditis elegans
GN=ifp-1 PE=3 SV=1
Length = 776
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 33/192 (17%)
Query: 248 KGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMES 307
K EL +++ +EE N K+ + + +F ++HV D++R D+R
Sbjct: 186 KNELLHSIRNMEEDNKKII-------MNEHKYFVRDRNADRHVFRDQLRKAIADIR---- 234
Query: 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS-VKNQ---L 363
A ++ L+ + RI++ ++++ + T+ V C + LS VKN L
Sbjct: 235 --------ADYEANRLRNEEEIRIRLEREIHRMNTTMPGVVCYDKLREELSIVKNNLSGL 286
Query: 364 EKSKSEV------FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRR---SSAVTDSK 414
+K SEV Q F +L++ ++N + +T L KI ++ R + +V K
Sbjct: 287 QKQVSEVEIRNNSLTQQIEFYRLEISENNKLFEDT-LEFKIKEIEKMREQCTAISVELEK 345
Query: 415 IADLGIEIQKQI 426
+ DL I++QK+I
Sbjct: 346 LCDLNIDLQKEI 357
>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1
SV=2
Length = 973
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G++ P++K +++ + T + S +++D LQ +N+KL + L+ ++
Sbjct: 14 GTSMPPEKK----TAVEDSGTTVETIKLGGVSSTEELDIRTLQSKNRKLAEMLDQRQAIE 69
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEEL 92
L +L+ RQ D++L +VN+ W +
Sbjct: 70 DELREHIEKLERRQATDDASLLIVNRYWSQF 100
>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1
SV=2
Length = 975
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G++ P++K +++ + T + S +++D LQ +N+KL + L+ ++
Sbjct: 14 GTSMPPEKK----AAVEDSGTTVETIKLGGVSSTEELDIRTLQTKNRKLAEMLDQRQAIE 69
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEEL 92
L +L+ RQ D++L +VN+ W +
Sbjct: 70 DELREHIEKLERRQATDDASLLIVNRYWSQF 100
>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1
Length = 975
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G++ P++K +++ + T + S +++D LQ +N+KL + L+ ++
Sbjct: 14 GTSVPPEKK----TAVEDSGTTVETIKLGGVSSTEELDIRTLQTKNRKLAEMLDQRQAIE 69
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEEL 92
L +L+ RQ D++L +VN+ W +
Sbjct: 70 DELREHIEKLERRQATDDASLLIVNRYWSQF 100
>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2
SV=1
Length = 984
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 2 GSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEY 61
G + P++K + + + T + S +++D LQ +N+KL + L+ ++
Sbjct: 14 GPSAPPEKK----AGVEDSGTTVETIKLGGVSSTEELDIRTLQTKNRKLAEMLDQRQAIE 69
Query: 62 SALENKFAQLKERQQPYDSTLKVVNKSWEEL 92
L +L+ RQ D++L ++N+ W +
Sbjct: 70 DELREHIEKLERRQATDDASLLIINRYWNQF 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,718,187
Number of Sequences: 539616
Number of extensions: 7011285
Number of successful extensions: 27773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1000
Number of HSP's that attempted gapping in prelim test: 25315
Number of HSP's gapped (non-prelim): 2621
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)