Query 008671
Match_columns 557
No_of_seqs 116 out of 140
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 3.4E-33 7.4E-38 308.2 30.5 362 152-553 3-369 (698)
2 PRK02224 chromosome segregatio 98.6 0.0049 1.1E-07 73.0 49.5 36 353-388 536-571 (880)
3 TIGR00606 rad50 rad50. This fa 98.3 0.025 5.4E-07 70.2 47.5 42 501-542 1063-1106(1311)
4 PF12128 DUF3584: Protein of u 98.3 0.026 5.7E-07 69.3 45.6 259 203-487 465-759 (1201)
5 PRK02224 chromosome segregatio 98.3 0.02 4.4E-07 67.9 47.7 89 302-390 351-441 (880)
6 PF10174 Cast: RIM-binding pro 98.2 0.0042 9.1E-08 72.2 32.9 350 156-524 133-539 (775)
7 PF07888 CALCOCO1: Calcium bin 98.1 0.026 5.7E-07 62.9 36.0 36 452-487 362-401 (546)
8 TIGR02168 SMC_prok_B chromosom 98.0 0.074 1.6E-06 64.3 41.8 15 161-175 175-189 (1179)
9 PF10174 Cast: RIM-binding pro 98.0 0.074 1.6E-06 62.1 45.6 270 209-509 109-423 (775)
10 TIGR00606 rad50 rad50. This fa 97.9 0.13 2.9E-06 63.9 48.4 57 48-104 573-629 (1311)
11 KOG0978 E3 ubiquitin ligase in 97.9 0.067 1.4E-06 61.3 35.7 316 201-548 56-392 (698)
12 TIGR02169 SMC_prok_A chromosom 97.9 0.069 1.5E-06 64.7 38.3 42 499-540 462-503 (1164)
13 TIGR02168 SMC_prok_B chromosom 97.8 0.18 3.9E-06 61.0 50.4 43 302-344 672-714 (1179)
14 COG1196 Smc Chromosome segrega 97.7 0.21 4.6E-06 61.3 39.0 59 209-267 669-727 (1163)
15 PRK03918 chromosome segregatio 97.7 0.23 4.9E-06 59.0 43.8 27 354-380 525-551 (880)
16 PF05701 WEMBL: Weak chloropla 97.6 0.2 4.3E-06 56.4 33.6 213 307-526 116-350 (522)
17 KOG4674 Uncharacterized conser 97.6 0.44 9.6E-06 59.7 40.1 233 212-470 942-1204(1822)
18 PF00038 Filament: Intermediat 97.6 0.14 3.1E-06 53.2 37.1 65 204-268 22-94 (312)
19 PF00038 Filament: Intermediat 97.5 0.15 3.3E-06 53.1 31.5 73 415-491 164-236 (312)
20 KOG0161 Myosin class II heavy 97.5 0.61 1.3E-05 59.3 48.1 26 448-473 1281-1306(1930)
21 KOG0971 Microtubule-associated 97.5 0.35 7.7E-06 56.3 36.5 216 302-535 313-547 (1243)
22 KOG0161 Myosin class II heavy 97.5 0.71 1.5E-05 58.7 45.3 60 209-268 952-1011(1930)
23 PF09730 BicD: Microtubule-ass 97.4 0.38 8.2E-06 55.7 32.7 188 303-496 79-384 (717)
24 KOG0976 Rho/Rac1-interacting s 97.4 0.47 1E-05 54.6 34.4 62 204-265 96-157 (1265)
25 PRK04863 mukB cell division pr 97.2 0.57 1.2E-05 58.8 33.0 43 303-345 438-480 (1486)
26 KOG4674 Uncharacterized conser 97.2 1.3 2.7E-05 55.9 46.2 106 414-525 899-1016(1822)
27 KOG0977 Nuclear envelope prote 97.2 0.62 1.3E-05 52.3 30.3 46 302-347 150-195 (546)
28 KOG0933 Structural maintenance 97.2 0.87 1.9E-05 53.8 36.3 214 302-530 789-1025(1174)
29 PF15070 GOLGA2L5: Putative go 97.1 0.68 1.5E-05 53.1 30.3 168 203-390 83-259 (617)
30 PF04849 HAP1_N: HAP1 N-termin 97.1 0.25 5.5E-06 51.5 24.4 143 353-528 159-305 (306)
31 COG1196 Smc Chromosome segrega 97.1 1.3 2.8E-05 54.7 50.4 84 302-385 669-761 (1163)
32 PRK03918 chromosome segregatio 97.1 1 2.2E-05 53.5 42.0 41 329-373 564-604 (880)
33 PF14662 CCDC155: Coiled-coil 97.0 0.35 7.6E-06 47.1 23.1 180 210-424 4-190 (193)
34 KOG4643 Uncharacterized coiled 97.0 1.1 2.3E-05 53.0 30.7 135 302-444 186-332 (1195)
35 KOG0977 Nuclear envelope prote 97.0 0.9 1.9E-05 51.0 31.1 55 219-273 139-193 (546)
36 KOG0971 Microtubule-associated 97.0 1.2 2.6E-05 52.1 36.6 33 60-92 232-264 (1243)
37 KOG4643 Uncharacterized coiled 97.0 1.3 2.9E-05 52.3 39.3 64 208-271 265-330 (1195)
38 PF09730 BicD: Microtubule-ass 96.8 1.7 3.7E-05 50.5 35.8 59 203-265 100-158 (717)
39 PRK11637 AmiB activator; Provi 96.8 1 2.2E-05 49.4 26.9 50 218-267 72-121 (428)
40 PF12128 DUF3584: Protein of u 96.7 2.6 5.7E-05 52.2 41.4 57 48-104 479-535 (1201)
41 PHA02562 46 endonuclease subun 96.7 1.6 3.5E-05 49.0 28.7 112 150-271 166-277 (562)
42 KOG0933 Structural maintenance 96.7 0.76 1.7E-05 54.3 25.5 44 65-108 250-293 (1174)
43 KOG0250 DNA repair protein RAD 96.5 3 6.5E-05 50.0 33.7 214 302-542 318-546 (1074)
44 PF09726 Macoilin: Transmembra 96.4 0.69 1.5E-05 53.8 23.5 99 411-524 543-654 (697)
45 PF07888 CALCOCO1: Calcium bin 96.3 2.6 5.6E-05 47.5 41.3 26 479-504 372-397 (546)
46 KOG0963 Transcription factor/C 96.3 2.6 5.7E-05 47.7 32.2 162 356-525 191-356 (629)
47 KOG0612 Rho-associated, coiled 96.3 4.2 9.2E-05 49.3 32.9 200 215-432 488-693 (1317)
48 KOG0999 Microtubule-associated 96.2 2 4.4E-05 47.9 24.2 166 320-485 7-201 (772)
49 PF14915 CCDC144C: CCDC144C pr 96.2 0.69 1.5E-05 47.9 19.6 204 325-552 28-254 (305)
50 PF15070 GOLGA2L5: Putative go 96.1 3.8 8.3E-05 47.1 34.6 264 233-537 27-310 (617)
51 PF08317 Spc7: Spc7 kinetochor 96.1 1.9 4.2E-05 45.6 23.3 94 447-540 177-271 (325)
52 KOG0996 Structural maintenance 96.1 5.1 0.00011 48.4 45.0 70 302-376 780-849 (1293)
53 PRK11637 AmiB activator; Provi 96.0 3.2 6.9E-05 45.5 28.0 53 213-265 46-98 (428)
54 PHA02562 46 endonuclease subun 95.9 1.5 3.2E-05 49.3 23.0 75 471-545 330-418 (562)
55 KOG0964 Structural maintenance 95.8 5.7 0.00012 47.2 41.9 167 353-535 726-904 (1200)
56 PRK04863 mukB cell division pr 95.7 9 0.00019 48.5 34.7 51 214-264 286-336 (1486)
57 PF09755 DUF2046: Uncharacteri 95.7 3.3 7.2E-05 43.4 31.3 102 358-475 139-243 (310)
58 PRK01156 chromosome segregatio 95.6 7 0.00015 46.8 42.1 18 451-468 647-664 (895)
59 PF05557 MAD: Mitotic checkpoi 95.5 0.016 3.5E-07 67.4 5.1 221 308-538 285-535 (722)
60 PRK09039 hypothetical protein; 95.4 2.4 5.1E-05 45.4 20.7 157 204-388 43-200 (343)
61 PF05622 HOOK: HOOK protein; 95.3 0.062 1.3E-06 62.6 9.1 203 323-533 202-425 (713)
62 COG1340 Uncharacterized archae 95.3 4.5 9.8E-05 42.2 27.1 109 416-524 134-253 (294)
63 PF13851 GAS: Growth-arrest sp 95.3 3.5 7.5E-05 40.8 21.1 110 302-444 29-138 (201)
64 PF09726 Macoilin: Transmembra 95.1 7 0.00015 45.7 24.9 60 203-269 456-515 (697)
65 PF15619 Lebercilin: Ciliary p 95.0 3.9 8.5E-05 40.3 20.1 169 314-500 5-193 (194)
66 PF01576 Myosin_tail_1: Myosin 95.0 0.0063 1.4E-07 72.1 0.0 28 412-439 341-368 (859)
67 PRK09039 hypothetical protein; 95.0 2.3 5E-05 45.4 19.3 116 411-535 79-195 (343)
68 PF00261 Tropomyosin: Tropomyo 95.0 4.6 0.0001 40.7 24.2 134 302-443 94-234 (237)
69 COG3883 Uncharacterized protei 94.9 3.5 7.5E-05 42.4 19.3 67 203-269 41-108 (265)
70 PF00261 Tropomyosin: Tropomyo 94.9 4.7 0.0001 40.6 22.7 113 302-438 3-117 (237)
71 PF05622 HOOK: HOOK protein; 94.9 0.048 1E-06 63.5 6.8 28 32-60 57-85 (713)
72 PF05701 WEMBL: Weak chloropla 94.8 9 0.0002 43.3 46.8 256 201-525 173-433 (522)
73 KOG1853 LIS1-interacting prote 94.7 2.3 4.9E-05 43.2 17.0 58 322-380 53-110 (333)
74 COG4942 Membrane-bound metallo 94.5 9.2 0.0002 41.8 29.2 65 412-478 191-255 (420)
75 KOG0612 Rho-associated, coiled 94.4 17 0.00036 44.5 33.7 42 228-269 494-535 (1317)
76 COG1579 Zn-ribbon protein, pos 94.3 2.7 5.8E-05 42.7 16.6 88 301-388 32-130 (239)
77 KOG0995 Centromere-associated 94.1 13 0.00027 42.1 39.7 106 149-269 215-321 (581)
78 TIGR02680 conserved hypothetic 94.1 22 0.00048 44.9 31.3 132 236-388 743-878 (1353)
79 PF13851 GAS: Growth-arrest sp 94.1 4.3 9.4E-05 40.1 17.5 134 302-444 36-174 (201)
80 PRK04778 septation ring format 94.0 14 0.00031 42.1 39.4 78 301-382 257-338 (569)
81 TIGR01005 eps_transp_fam exopo 93.9 16 0.00035 42.9 24.9 186 237-439 189-402 (754)
82 PF05911 DUF869: Plant protein 93.9 13 0.00028 43.9 23.4 254 239-522 21-309 (769)
83 PF05557 MAD: Mitotic checkpoi 93.5 0.021 4.6E-07 66.6 0.0 105 320-438 215-323 (722)
84 KOG0980 Actin-binding protein 93.4 21 0.00045 42.3 26.7 76 360-438 416-491 (980)
85 KOG0999 Microtubule-associated 93.4 16 0.00035 41.0 31.3 223 204-438 12-254 (772)
86 KOG0980 Actin-binding protein 93.3 12 0.00027 44.1 21.3 108 408-515 419-531 (980)
87 KOG2991 Splicing regulator [RN 93.3 7.4 0.00016 39.7 17.3 176 302-500 113-314 (330)
88 PF06160 EzrA: Septation ring 93.3 18 0.0004 41.2 33.0 173 301-498 253-434 (560)
89 PF10481 CENP-F_N: Cenp-F N-te 93.1 5.5 0.00012 41.0 16.3 82 181-269 41-122 (307)
90 KOG0976 Rho/Rac1-interacting s 92.4 27 0.00059 41.0 36.6 324 176-528 52-408 (1265)
91 TIGR03007 pepcterm_ChnLen poly 92.4 21 0.00046 39.6 28.7 206 204-439 165-381 (498)
92 PF15619 Lebercilin: Ciliary p 92.3 7.6 0.00017 38.2 16.0 97 410-508 16-127 (194)
93 KOG0996 Structural maintenance 92.3 34 0.00074 41.8 37.9 58 212-269 375-432 (1293)
94 PF01576 Myosin_tail_1: Myosin 92.1 0.044 9.5E-07 65.1 0.0 70 202-271 372-441 (859)
95 KOG2129 Uncharacterized conser 92.1 21 0.00046 38.9 24.5 16 423-438 211-226 (552)
96 COG4372 Uncharacterized protei 92.0 21 0.00045 38.6 22.0 59 413-473 130-191 (499)
97 PF04849 HAP1_N: HAP1 N-termin 91.9 19 0.0004 38.0 21.8 99 324-443 170-271 (306)
98 PRK01156 chromosome segregatio 91.6 37 0.0008 40.7 41.8 26 449-474 464-489 (895)
99 KOG0994 Extracellular matrix g 91.4 42 0.00092 41.1 30.9 60 204-263 1546-1605(1758)
100 TIGR03017 EpsF chain length de 91.0 27 0.00059 38.0 25.9 34 238-271 167-200 (444)
101 PF08614 ATG16: Autophagy prot 90.9 1.6 3.5E-05 42.6 9.7 82 303-389 98-179 (194)
102 PF05667 DUF812: Protein of un 90.9 36 0.00077 39.2 25.5 142 313-485 320-461 (594)
103 PF13514 AAA_27: AAA domain 90.9 50 0.0011 40.9 45.4 50 44-93 542-591 (1111)
104 PF15294 Leu_zip: Leucine zipp 90.7 23 0.0005 36.8 18.9 61 316-376 210-275 (278)
105 COG1340 Uncharacterized archae 90.6 24 0.00053 36.9 29.5 69 203-271 30-98 (294)
106 TIGR01005 eps_transp_fam exopo 90.4 21 0.00046 41.9 20.0 32 240-271 235-266 (754)
107 KOG0946 ER-Golgi vesicle-tethe 90.3 45 0.00097 39.4 22.5 122 412-536 805-948 (970)
108 KOG4673 Transcription factor T 89.9 44 0.00096 38.7 44.1 408 40-540 455-928 (961)
109 smart00787 Spc7 Spc7 kinetocho 89.8 29 0.00064 36.7 22.3 94 447-540 172-266 (312)
110 PF10186 Atg14: UV radiation r 89.7 17 0.00038 37.0 16.5 83 413-495 20-108 (302)
111 PF09789 DUF2353: Uncharacteri 89.7 31 0.00067 36.6 24.8 90 240-345 21-110 (319)
112 TIGR03185 DNA_S_dndD DNA sulfu 89.7 46 0.00099 38.6 36.7 82 161-250 169-252 (650)
113 KOG4360 Uncharacterized coiled 88.9 44 0.00096 37.4 19.8 139 321-485 159-303 (596)
114 COG1579 Zn-ribbon protein, pos 88.7 30 0.00065 35.3 20.1 117 208-345 18-134 (239)
115 KOG0994 Extracellular matrix g 88.4 72 0.0016 39.2 31.6 286 209-521 1417-1732(1758)
116 KOG0964 Structural maintenance 88.2 68 0.0015 38.7 31.3 35 474-508 470-504 (1200)
117 PF12325 TMF_TATA_bd: TATA ele 88.1 7.3 0.00016 35.5 10.9 75 351-432 13-87 (120)
118 PF09486 HrpB7: Bacterial type 88.1 14 0.00031 35.2 13.2 117 151-269 15-134 (158)
119 PF15397 DUF4618: Domain of un 88.0 35 0.00076 35.1 20.1 124 204-339 42-167 (258)
120 PF08614 ATG16: Autophagy prot 87.9 4.7 0.0001 39.4 10.4 118 201-341 68-185 (194)
121 PF09787 Golgin_A5: Golgin sub 87.9 52 0.0011 37.1 23.5 80 358-438 225-313 (511)
122 PF09755 DUF2046: Uncharacteri 87.9 40 0.00086 35.6 29.9 152 303-473 23-197 (310)
123 PF09728 Taxilin: Myosin-like 87.6 41 0.00088 35.5 21.7 83 302-384 225-309 (309)
124 PF11559 ADIP: Afadin- and alp 87.6 18 0.00039 33.7 13.7 75 302-376 40-116 (151)
125 PF10473 CENP-F_leu_zip: Leuci 86.4 29 0.00062 32.5 16.8 96 222-347 4-99 (140)
126 PF08172 CASP_C: CASP C termin 86.0 13 0.00029 37.9 12.7 41 302-342 95-135 (248)
127 PRK11281 hypothetical protein; 86.0 1E+02 0.0022 38.3 26.2 134 235-376 73-214 (1113)
128 KOG1029 Endocytic adaptor prot 85.8 82 0.0018 37.2 24.8 131 366-498 446-583 (1118)
129 PF11559 ADIP: Afadin- and alp 85.8 25 0.00055 32.7 13.7 108 156-263 29-136 (151)
130 PF12325 TMF_TATA_bd: TATA ele 85.7 22 0.00049 32.3 12.6 88 446-533 15-109 (120)
131 PF13870 DUF4201: Domain of un 85.3 36 0.00078 32.6 18.3 88 301-393 43-130 (177)
132 KOG0963 Transcription factor/C 85.0 79 0.0017 36.3 37.7 149 320-482 241-404 (629)
133 PRK10361 DNA recombination pro 84.9 72 0.0016 35.8 18.7 83 414-496 93-183 (475)
134 PF00769 ERM: Ezrin/radixin/mo 84.6 5.5 0.00012 40.6 9.2 53 217-269 78-130 (246)
135 COG5185 HEC1 Protein involved 84.5 73 0.0016 35.5 30.4 132 208-345 289-434 (622)
136 PRK10884 SH3 domain-containing 84.3 7.2 0.00016 38.8 9.6 74 412-490 92-165 (206)
137 KOG1853 LIS1-interacting prote 84.0 54 0.0012 33.6 19.7 173 355-547 7-191 (333)
138 TIGR03007 pepcterm_ChnLen poly 83.3 80 0.0017 35.0 22.2 35 237-271 256-290 (498)
139 PLN03188 kinesin-12 family pro 82.7 1.4E+02 0.003 37.3 27.6 180 353-548 1044-1260(1320)
140 PF09787 Golgin_A5: Golgin sub 82.4 92 0.002 35.1 27.5 170 302-473 111-300 (511)
141 PRK04778 septation ring format 82.2 1E+02 0.0022 35.3 44.0 128 307-444 201-341 (569)
142 KOG0250 DNA repair protein RAD 82.0 1.3E+02 0.0029 36.7 44.0 63 201-263 402-464 (1074)
143 PF06548 Kinesin-related: Kine 81.8 91 0.002 34.6 24.1 150 366-530 300-472 (488)
144 KOG4807 F-actin binding protei 81.5 86 0.0019 34.1 16.8 167 352-532 289-475 (593)
145 PF06160 EzrA: Septation ring 81.0 1.1E+02 0.0024 35.0 44.3 33 412-444 305-337 (560)
146 PRK09841 cryptic autophosphory 80.8 36 0.00077 40.1 15.2 115 366-494 272-386 (726)
147 PF02403 Seryl_tRNA_N: Seryl-t 80.5 21 0.00045 31.3 10.2 64 205-268 34-100 (108)
148 PF10168 Nup88: Nuclear pore c 80.4 1.2E+02 0.0026 35.9 19.0 26 413-438 593-618 (717)
149 KOG4593 Mitotic checkpoint pro 79.5 1.3E+02 0.0029 35.0 46.6 74 408-481 379-453 (716)
150 TIGR00634 recN DNA repair prot 79.4 1.2E+02 0.0026 34.5 20.3 69 356-438 303-371 (563)
151 PF14197 Cep57_CLD_2: Centroso 79.2 26 0.00056 28.8 9.5 63 205-267 3-65 (69)
152 PF14662 CCDC155: Coiled-coil 78.8 70 0.0015 31.5 25.2 80 302-390 10-89 (193)
153 COG4942 Membrane-bound metallo 78.3 1.1E+02 0.0025 33.6 29.2 28 411-438 236-263 (420)
154 PF03962 Mnd1: Mnd1 family; I 78.2 46 0.001 32.6 12.7 99 412-510 68-167 (188)
155 PF05667 DUF812: Protein of un 78.1 1.4E+02 0.003 34.5 27.8 184 302-486 330-527 (594)
156 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.1 39 0.00085 30.9 11.6 76 462-537 4-83 (132)
157 PF08317 Spc7: Spc7 kinetochor 78.0 98 0.0021 32.7 23.8 25 414-438 171-195 (325)
158 COG0419 SbcC ATPase involved i 77.8 1.7E+02 0.0037 35.4 50.5 39 504-542 717-755 (908)
159 COG4372 Uncharacterized protei 77.6 1.1E+02 0.0025 33.2 21.1 18 254-271 72-89 (499)
160 KOG0979 Structural maintenance 77.5 1.8E+02 0.0039 35.5 26.5 50 53-102 175-224 (1072)
161 PF07106 TBPIP: Tat binding pr 77.2 34 0.00074 32.5 11.4 73 412-488 78-155 (169)
162 TIGR02680 conserved hypothetic 76.9 2.2E+02 0.0048 36.2 22.4 76 412-487 806-884 (1353)
163 PF15254 CCDC14: Coiled-coil d 76.3 74 0.0016 37.5 15.2 104 416-532 437-555 (861)
164 PRK10884 SH3 domain-containing 76.1 19 0.00041 35.8 9.5 65 205-269 98-166 (206)
165 TIGR01843 type_I_hlyD type I s 75.7 1.2E+02 0.0025 32.5 20.7 14 511-524 251-264 (423)
166 PF04728 LPP: Lipoprotein leuc 75.6 19 0.00042 28.5 7.4 47 222-268 4-50 (56)
167 PF10146 zf-C4H2: Zinc finger- 75.1 25 0.00055 35.6 10.2 23 369-391 33-55 (230)
168 COG2433 Uncharacterized conser 75.1 21 0.00046 40.7 10.4 105 359-470 434-547 (652)
169 KOG0995 Centromere-associated 74.6 1.6E+02 0.0035 33.6 42.6 332 50-474 233-566 (581)
170 PF09738 DUF2051: Double stran 74.2 1.2E+02 0.0027 32.0 15.6 22 323-344 221-242 (302)
171 PF07798 DUF1640: Protein of u 73.7 88 0.0019 30.1 13.8 100 417-527 48-152 (177)
172 PF10481 CENP-F_N: Cenp-F N-te 73.6 1.2E+02 0.0026 31.6 17.1 27 501-527 164-190 (307)
173 COG4026 Uncharacterized protei 73.4 69 0.0015 32.3 12.3 113 324-439 76-203 (290)
174 PF09728 Taxilin: Myosin-like 73.4 1.3E+02 0.0028 31.8 32.3 59 204-266 33-91 (309)
175 PF13870 DUF4201: Domain of un 73.4 88 0.0019 29.9 18.4 124 319-444 4-136 (177)
176 PF05483 SCP-1: Synaptonemal c 73.1 1.9E+02 0.0042 33.8 40.0 126 412-542 316-451 (786)
177 PF12718 Tropomyosin_1: Tropom 72.7 83 0.0018 29.4 15.0 62 204-265 4-65 (143)
178 PF06005 DUF904: Protein of un 71.7 57 0.0012 27.0 10.2 59 321-391 4-62 (72)
179 PF06818 Fez1: Fez1; InterPro 71.7 46 0.001 33.0 10.8 87 450-539 20-106 (202)
180 PF11932 DUF3450: Protein of u 71.6 45 0.00098 33.8 11.3 97 446-548 69-167 (251)
181 PF04576 Zein-binding: Zein-bi 71.0 72 0.0016 27.9 10.6 89 416-506 2-91 (94)
182 PF11172 DUF2959: Protein of u 70.6 1.2E+02 0.0025 30.2 19.6 87 353-454 63-151 (201)
183 TIGR01843 type_I_hlyD type I s 70.3 1.6E+02 0.0034 31.5 21.0 27 321-347 81-107 (423)
184 smart00787 Spc7 Spc7 kinetocho 69.7 1.6E+02 0.0034 31.3 21.4 26 413-438 165-190 (312)
185 PF08826 DMPK_coil: DMPK coile 69.2 34 0.00073 27.5 7.6 45 211-262 15-59 (61)
186 PF04156 IncA: IncA protein; 68.8 1E+02 0.0023 29.5 12.7 57 414-470 82-139 (191)
187 PF08700 Vps51: Vps51/Vps67; 68.7 29 0.00062 28.9 7.7 58 448-505 20-85 (87)
188 PF05010 TACC: Transforming ac 68.2 1.3E+02 0.0029 29.9 23.9 136 356-509 64-199 (207)
189 PF04859 DUF641: Plant protein 68.1 59 0.0013 30.1 10.1 107 159-269 6-121 (131)
190 PF11932 DUF3450: Protein of u 68.1 1.4E+02 0.0031 30.2 15.4 36 355-390 57-92 (251)
191 PF09738 DUF2051: Double stran 67.6 90 0.002 32.9 12.6 84 302-390 79-162 (302)
192 KOG0804 Cytoplasmic Zn-finger 67.6 1.2E+02 0.0027 33.6 13.7 99 321-426 347-448 (493)
193 PRK09841 cryptic autophosphory 66.3 2.7E+02 0.0059 32.8 19.2 39 233-271 258-296 (726)
194 PF10186 Atg14: UV radiation r 66.3 1.6E+02 0.0034 30.0 15.5 25 413-437 63-87 (302)
195 PRK11519 tyrosine kinase; Prov 66.3 2.7E+02 0.0059 32.8 19.0 37 235-271 260-296 (719)
196 PF04111 APG6: Autophagy prote 66.2 41 0.00089 35.6 9.9 23 359-381 14-36 (314)
197 PRK10929 putative mechanosensi 66.1 3.4E+02 0.0074 33.8 32.3 128 236-377 59-196 (1109)
198 PF10267 Tmemb_cc2: Predicted 66.0 1.8E+02 0.004 31.9 14.9 101 320-467 218-318 (395)
199 KOG1265 Phospholipase C [Lipid 64.7 3.2E+02 0.007 33.1 17.3 46 423-469 1109-1154(1189)
200 PRK15422 septal ring assembly 64.6 65 0.0014 27.2 8.6 25 154-178 7-31 (79)
201 PF09304 Cortex-I_coil: Cortex 64.5 1.1E+02 0.0023 27.5 10.7 70 457-529 12-81 (107)
202 KOG3850 Predicted membrane pro 64.4 2.2E+02 0.0048 31.1 16.6 105 320-471 266-370 (455)
203 KOG0018 Structural maintenance 64.4 3.5E+02 0.0075 33.3 28.7 114 307-444 241-355 (1141)
204 COG4985 ABC-type phosphate tra 64.2 86 0.0019 31.8 10.9 67 355-438 180-246 (289)
205 PRK11519 tyrosine kinase; Prov 64.1 2.3E+02 0.0049 33.4 16.4 115 365-493 271-385 (719)
206 KOG4360 Uncharacterized coiled 63.7 2.3E+02 0.0049 32.1 15.0 98 413-527 202-303 (596)
207 PF15397 DUF4618: Domain of un 62.3 2E+02 0.0043 29.8 18.0 80 302-388 65-144 (258)
208 KOG4005 Transcription factor X 62.1 54 0.0012 33.3 9.1 46 173-232 84-129 (292)
209 PF04111 APG6: Autophagy prote 61.9 23 0.00049 37.5 7.0 87 454-540 9-105 (314)
210 PLN02939 transferase, transfer 61.8 3.8E+02 0.0082 32.9 20.9 213 320-544 155-400 (977)
211 PF07111 HCR: Alpha helical co 61.2 3.3E+02 0.0072 32.0 41.3 177 321-501 380-583 (739)
212 KOG4421 Uncharacterized conser 61.1 1.5E+02 0.0033 32.0 12.7 118 349-473 17-171 (637)
213 PF10498 IFT57: Intra-flagella 61.0 1.5E+02 0.0033 32.1 13.1 108 426-534 240-349 (359)
214 COG4717 Uncharacterized conser 60.6 3.7E+02 0.0081 32.4 31.9 81 361-469 774-854 (984)
215 PF05483 SCP-1: Synaptonemal c 60.3 3.4E+02 0.0074 31.9 43.8 156 305-486 518-693 (786)
216 PF07106 TBPIP: Tat binding pr 60.3 1.1E+02 0.0025 28.9 10.9 91 203-320 75-165 (169)
217 PF09304 Cortex-I_coil: Cortex 60.2 1.3E+02 0.0028 27.0 10.1 60 204-263 13-72 (107)
218 COG3074 Uncharacterized protei 60.2 55 0.0012 27.1 7.2 60 416-475 7-67 (79)
219 COG2433 Uncharacterized conser 59.9 1.1E+02 0.0023 35.3 11.9 74 451-527 426-502 (652)
220 PF13514 AAA_27: AAA domain 59.6 4.3E+02 0.0093 32.8 47.7 91 355-445 551-650 (1111)
221 PF12761 End3: Actin cytoskele 59.4 49 0.0011 32.7 8.2 59 446-504 131-193 (195)
222 KOG0742 AAA+-type ATPase [Post 59.0 2.8E+02 0.006 31.0 14.4 20 418-437 196-215 (630)
223 TIGR03185 DNA_S_dndD DNA sulfu 58.8 3.4E+02 0.0075 31.5 37.4 42 228-269 209-250 (650)
224 KOG0946 ER-Golgi vesicle-tethe 58.8 3.9E+02 0.0084 32.1 25.3 62 204-265 661-722 (970)
225 PF02183 HALZ: Homeobox associ 58.0 34 0.00073 25.8 5.4 33 355-387 6-38 (45)
226 PF03962 Mnd1: Mnd1 family; I 57.9 1.6E+02 0.0034 28.9 11.6 43 348-390 48-91 (188)
227 KOG0249 LAR-interacting protei 56.9 3.9E+02 0.0086 31.6 21.8 41 412-452 162-203 (916)
228 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.3 1.6E+02 0.0035 26.9 15.4 79 302-380 5-85 (132)
229 PF15035 Rootletin: Ciliary ro 56.1 2E+02 0.0044 28.0 17.7 20 415-434 143-162 (182)
230 COG4477 EzrA Negative regulato 55.8 3.6E+02 0.0078 30.8 31.0 149 206-375 117-269 (570)
231 PRK10803 tol-pal system protei 55.0 84 0.0018 32.3 9.7 36 230-265 56-91 (263)
232 PF10226 DUF2216: Uncharacteri 55.0 2.2E+02 0.0048 28.1 14.8 95 326-429 35-131 (195)
233 cd07661 BAR_ICA69 The Bin/Amph 54.9 2.3E+02 0.005 28.2 13.3 32 62-93 2-33 (204)
234 COG0172 SerS Seryl-tRNA synthe 54.4 1.3E+02 0.0029 33.3 11.5 77 205-281 34-114 (429)
235 PRK10722 hypothetical protein; 54.3 1.1E+02 0.0023 31.4 9.9 75 201-275 132-210 (247)
236 PF12777 MT: Microtubule-bindi 54.2 1.1E+02 0.0025 32.5 10.9 90 466-555 3-112 (344)
237 TIGR03017 EpsF chain length de 53.3 3.3E+02 0.0072 29.6 20.8 22 513-534 349-370 (444)
238 KOG0288 WD40 repeat protein Ti 52.6 2.2E+02 0.0049 31.3 12.4 61 412-472 12-73 (459)
239 PF12329 TMF_DNA_bd: TATA elem 52.4 1.2E+02 0.0025 25.2 8.3 54 212-265 17-70 (74)
240 COG0216 PrfA Protein chain rel 51.8 1.7E+02 0.0036 31.5 11.1 49 328-376 7-55 (363)
241 PF12718 Tropomyosin_1: Tropom 51.5 2.1E+02 0.0045 26.7 18.3 32 413-444 80-111 (143)
242 PF07200 Mod_r: Modifier of ru 51.4 2E+02 0.0043 26.5 11.8 29 348-376 21-49 (150)
243 PRK15422 septal ring assembly 51.3 74 0.0016 26.9 6.9 61 415-475 6-67 (79)
244 PF07139 DUF1387: Protein of u 51.2 1.6E+02 0.0034 31.1 10.9 41 446-486 185-225 (302)
245 PF05335 DUF745: Protein of un 51.0 2.5E+02 0.0055 27.6 12.1 71 355-435 103-173 (188)
246 KOG3433 Protein involved in me 51.0 1.6E+02 0.0035 28.9 10.0 69 413-481 81-150 (203)
247 TIGR02231 conserved hypothetic 50.7 1.1E+02 0.0024 34.4 10.6 35 307-341 138-172 (525)
248 PF10458 Val_tRNA-synt_C: Valy 50.0 1.1E+02 0.0024 24.5 7.7 35 321-355 4-38 (66)
249 TIGR03752 conj_TIGR03752 integ 49.9 99 0.0022 34.5 9.6 40 302-348 61-100 (472)
250 PRK13729 conjugal transfer pil 48.9 1.1E+02 0.0023 34.3 9.7 6 276-281 131-136 (475)
251 PF10498 IFT57: Intra-flagella 48.7 2.8E+02 0.0062 30.0 12.8 98 155-262 217-314 (359)
252 PF09789 DUF2353: Uncharacteri 48.4 3.7E+02 0.008 28.7 22.9 181 353-541 8-224 (319)
253 PRK07720 fliJ flagellar biosyn 48.1 2.2E+02 0.0048 26.1 14.7 98 405-502 22-123 (146)
254 PLN02678 seryl-tRNA synthetase 47.8 2.3E+02 0.0049 31.7 12.1 77 205-281 38-117 (448)
255 PF04912 Dynamitin: Dynamitin 47.7 4E+02 0.0086 28.9 22.9 25 321-345 261-285 (388)
256 TIGR03752 conj_TIGR03752 integ 46.9 2.7E+02 0.0059 31.2 12.4 15 202-216 82-96 (472)
257 PF02050 FliJ: Flagellar FliJ 46.0 1.9E+02 0.004 24.6 13.1 62 410-473 9-71 (123)
258 PF08581 Tup_N: Tup N-terminal 45.7 58 0.0013 27.5 5.6 62 422-489 6-75 (79)
259 PF05529 Bap31: B-cell recepto 45.7 1.3E+02 0.0028 29.2 8.9 37 235-271 154-190 (192)
260 TIGR02894 DNA_bind_RsfA transc 45.7 1.1E+02 0.0025 29.2 8.1 52 204-262 101-152 (161)
261 KOG0962 DNA repair protein RAD 45.7 7.4E+02 0.016 31.4 36.4 92 450-541 570-666 (1294)
262 PF09744 Jnk-SapK_ap_N: JNK_SA 45.6 94 0.002 29.7 7.6 66 203-268 85-150 (158)
263 KOG2129 Uncharacterized conser 45.5 4.6E+02 0.01 29.0 21.6 36 456-491 248-291 (552)
264 KOG4302 Microtubule-associated 45.5 5.7E+02 0.012 30.0 37.5 124 78-232 5-128 (660)
265 TIGR02977 phageshock_pspA phag 44.9 3.2E+02 0.007 27.1 19.4 44 302-345 33-76 (219)
266 TIGR01010 BexC_CtrB_KpsE polys 44.8 3.6E+02 0.0078 28.6 12.9 32 240-271 168-199 (362)
267 PF12329 TMF_DNA_bd: TATA elem 44.6 1.8E+02 0.0039 24.1 8.3 56 214-269 12-67 (74)
268 PF05010 TACC: Transforming ac 44.4 3.4E+02 0.0073 27.1 22.1 26 512-537 174-199 (207)
269 TIGR02473 flagell_FliJ flagell 43.9 2.4E+02 0.0052 25.3 14.6 88 411-498 25-116 (141)
270 PF15456 Uds1: Up-regulated Du 43.4 2.1E+02 0.0045 26.3 9.2 68 201-269 23-108 (124)
271 PF15254 CCDC14: Coiled-coil d 42.9 4.9E+02 0.011 31.1 13.9 98 439-543 416-524 (861)
272 PRK14011 prefoldin subunit alp 42.9 1.7E+02 0.0036 27.5 8.8 34 306-339 83-116 (144)
273 PF05791 Bacillus_HBL: Bacillu 42.8 1.9E+02 0.0041 28.1 9.5 76 447-528 103-178 (184)
274 PF02403 Seryl_tRNA_N: Seryl-t 42.7 2.3E+02 0.0049 24.6 9.8 66 366-432 34-100 (108)
275 PF14197 Cep57_CLD_2: Centroso 42.7 1.9E+02 0.0041 23.7 8.8 56 205-260 10-65 (69)
276 PF10805 DUF2730: Protein of u 42.5 2.2E+02 0.0048 25.1 9.1 62 207-268 35-98 (106)
277 PRK11281 hypothetical protein; 42.4 7.9E+02 0.017 30.8 38.2 50 222-271 129-178 (1113)
278 KOG0018 Structural maintenance 42.2 7.7E+02 0.017 30.6 27.8 63 208-274 653-715 (1141)
279 PF15186 TEX13: Testis-express 42.2 2.7E+02 0.0058 26.4 9.7 61 366-439 90-150 (152)
280 KOG4687 Uncharacterized coiled 42.1 4.3E+02 0.0093 27.7 23.2 184 205-437 7-191 (389)
281 PF08172 CASP_C: CASP C termin 41.6 4.1E+02 0.0088 27.2 12.1 30 240-269 4-33 (248)
282 KOG4787 Uncharacterized conser 40.8 6.3E+02 0.014 29.3 15.8 145 358-509 329-483 (852)
283 PF10205 KLRAQ: Predicted coil 40.8 2.6E+02 0.0057 24.8 10.3 63 204-273 9-71 (102)
284 PF10458 Val_tRNA-synt_C: Valy 40.5 1.2E+02 0.0026 24.3 6.5 60 412-473 3-65 (66)
285 PF05008 V-SNARE: Vesicle tran 40.4 1.6E+02 0.0034 24.1 7.4 26 446-471 24-49 (79)
286 PRK05431 seryl-tRNA synthetase 40.3 2.2E+02 0.0048 31.3 10.7 77 205-281 33-112 (425)
287 PF12761 End3: Actin cytoskele 40.0 3E+02 0.0066 27.3 10.3 79 301-381 104-194 (195)
288 PF15035 Rootletin: Ciliary ro 39.8 3.7E+02 0.008 26.2 15.0 46 204-256 78-123 (182)
289 TIGR03545 conserved hypothetic 38.7 1.7E+02 0.0037 33.5 9.7 86 302-391 166-253 (555)
290 PF04048 Sec8_exocyst: Sec8 ex 38.7 3.2E+02 0.007 25.2 11.1 91 416-518 36-126 (142)
291 TIGR01010 BexC_CtrB_KpsE polys 38.6 5.1E+02 0.011 27.5 15.7 96 360-470 169-265 (362)
292 PRK00846 hypothetical protein; 38.5 1.3E+02 0.0028 25.4 6.5 45 225-269 10-54 (77)
293 PF10473 CENP-F_leu_zip: Leuci 38.4 3.4E+02 0.0074 25.4 15.4 70 412-487 65-135 (140)
294 PF12795 MscS_porin: Mechanose 38.2 4.3E+02 0.0092 26.5 19.6 133 237-377 33-173 (240)
295 PRK03947 prefoldin subunit alp 38.1 3.1E+02 0.0068 25.0 9.9 34 452-485 18-51 (140)
296 PF09311 Rab5-bind: Rabaptin-l 37.4 23 0.0005 34.3 2.2 59 204-262 26-84 (181)
297 PF10234 Cluap1: Clusterin-ass 37.1 5E+02 0.011 27.0 12.4 51 219-269 167-217 (267)
298 PF13623 SurA_N_2: SurA N-term 37.0 88 0.0019 29.3 5.9 41 61-101 58-98 (145)
299 PF13747 DUF4164: Domain of un 36.9 2.7E+02 0.0059 23.9 9.4 79 418-496 6-89 (89)
300 KOG0804 Cytoplasmic Zn-finger 36.5 6.5E+02 0.014 28.2 13.9 15 218-232 262-276 (493)
301 TIGR01000 bacteriocin_acc bact 36.4 6.2E+02 0.013 27.9 20.4 24 415-438 286-309 (457)
302 COG4985 ABC-type phosphate tra 36.4 3.5E+02 0.0077 27.6 10.2 21 149-169 159-179 (289)
303 PRK10929 putative mechanosensi 36.0 9.7E+02 0.021 30.0 37.5 82 457-538 336-429 (1109)
304 KOG1962 B-cell receptor-associ 35.9 2.2E+02 0.0049 28.6 8.8 26 479-504 173-198 (216)
305 KOG4460 Nuclear pore complex, 35.6 7.4E+02 0.016 28.5 14.8 147 48-237 591-739 (741)
306 PF08581 Tup_N: Tup N-terminal 34.9 2.7E+02 0.006 23.5 8.0 53 481-533 7-59 (79)
307 PF07889 DUF1664: Protein of u 34.8 3.3E+02 0.0071 25.1 9.1 83 380-468 41-124 (126)
308 PRK10246 exonuclease subunit S 34.8 9.7E+02 0.021 29.7 45.5 36 409-444 727-762 (1047)
309 PRK10476 multidrug resistance 34.8 5.6E+02 0.012 26.9 12.9 25 451-475 118-142 (346)
310 PF04728 LPP: Lipoprotein leuc 34.7 2.3E+02 0.0051 22.5 7.8 47 209-255 5-51 (56)
311 PF03245 Phage_lysis: Bacterio 34.7 3.6E+02 0.0077 24.6 10.5 55 211-265 11-65 (125)
312 PRK09973 putative outer membra 34.4 1.6E+02 0.0034 25.4 6.4 47 207-267 24-70 (85)
313 PF12709 Kinetocho_Slk19: Cent 34.4 3.1E+02 0.0067 23.7 8.5 64 211-274 16-81 (87)
314 COG1730 GIM5 Predicted prefold 34.4 4E+02 0.0087 25.1 12.6 23 308-330 91-113 (145)
315 PRK11546 zraP zinc resistance 34.3 2.6E+02 0.0057 26.3 8.5 54 484-537 60-113 (143)
316 PRK15396 murein lipoprotein; P 34.0 1.9E+02 0.0042 24.4 6.9 47 208-268 26-72 (78)
317 KOG4196 bZIP transcription fac 33.8 3.9E+02 0.0085 24.8 9.8 67 207-274 47-113 (135)
318 PF09403 FadA: Adhesion protei 33.5 2.3E+02 0.005 26.1 7.9 13 354-366 89-101 (126)
319 TIGR00414 serS seryl-tRNA synt 33.4 3.5E+02 0.0075 29.8 10.8 77 205-281 35-115 (418)
320 PF12126 DUF3583: Protein of u 33.1 3.2E+02 0.007 28.8 9.6 70 354-426 13-88 (324)
321 PRK14011 prefoldin subunit alp 33.0 68 0.0015 30.1 4.5 40 50-89 8-47 (144)
322 PF08647 BRE1: BRE1 E3 ubiquit 32.8 2.5E+02 0.0055 24.3 7.8 60 212-271 1-60 (96)
323 KOG0239 Kinesin (KAR3 subfamil 32.8 8.7E+02 0.019 28.6 14.3 34 456-489 236-273 (670)
324 PF14723 SSFA2_C: Sperm-specif 32.0 4.9E+02 0.011 25.4 10.4 65 313-391 97-161 (179)
325 PRK10246 exonuclease subunit S 32.0 1.1E+03 0.023 29.3 37.0 26 512-537 776-801 (1047)
326 KOG2176 Exocyst complex, subun 31.8 4E+02 0.0088 31.7 11.2 110 415-536 27-138 (800)
327 PF10168 Nup88: Nuclear pore c 31.5 9.5E+02 0.021 28.5 21.7 31 414-444 580-610 (717)
328 KOG2264 Exostosin EXT1L [Signa 31.5 2.7E+02 0.0058 32.0 9.3 55 446-503 78-132 (907)
329 TIGR02231 conserved hypothetic 31.2 3.1E+02 0.0068 30.8 10.3 59 412-470 77-147 (525)
330 PF05103 DivIVA: DivIVA protei 31.1 49 0.0011 29.6 3.2 25 322-346 33-57 (131)
331 KOG3647 Predicted coiled-coil 30.9 1.8E+02 0.0038 30.3 7.2 51 219-269 110-160 (338)
332 PF04880 NUDE_C: NUDE protein, 30.6 81 0.0018 30.4 4.6 42 302-347 2-43 (166)
333 PF06785 UPF0242: Uncharacteri 30.5 7.2E+02 0.016 26.8 16.9 61 318-390 96-156 (401)
334 PF06657 Cep57_MT_bd: Centroso 30.3 1.9E+02 0.0041 24.3 6.3 51 413-463 17-70 (79)
335 PF14182 YgaB: YgaB-like prote 30.2 3E+02 0.0066 23.3 7.3 53 462-514 15-69 (79)
336 PF05082 Rop-like: Rop-like; 30.2 2E+02 0.0043 23.6 6.1 59 204-269 6-64 (66)
337 PF05130 FlgN: FlgN protein; 30.0 3.8E+02 0.0083 23.5 12.1 26 365-390 9-34 (143)
338 COG1842 PspA Phage shock prote 29.9 5.9E+02 0.013 25.7 16.3 48 413-473 92-139 (225)
339 PRK05689 fliJ flagellar biosyn 29.9 4.4E+02 0.0094 24.1 14.6 94 405-499 22-120 (147)
340 PRK10476 multidrug resistance 29.9 6.7E+02 0.015 26.3 13.8 60 203-269 82-141 (346)
341 PF08826 DMPK_coil: DMPK coile 29.8 3E+02 0.0064 22.2 9.2 42 226-267 16-57 (61)
342 PF05700 BCAS2: Breast carcino 29.6 5.5E+02 0.012 25.6 10.6 29 458-486 140-168 (221)
343 PF07798 DUF1640: Protein of u 29.4 5.1E+02 0.011 24.8 17.0 23 451-473 135-157 (177)
344 PF02183 HALZ: Homeobox associ 28.5 2.1E+02 0.0045 21.6 5.6 16 217-232 8-23 (45)
345 COG0497 RecN ATPase involved i 28.3 9.7E+02 0.021 27.6 16.4 45 321-365 171-216 (557)
346 cd00632 Prefoldin_beta Prefold 28.1 4E+02 0.0087 23.1 8.9 82 452-533 11-97 (105)
347 PRK15396 murein lipoprotein; P 28.0 2.7E+02 0.0059 23.5 6.8 45 203-254 28-72 (78)
348 PRK10698 phage shock protein P 27.9 6.2E+02 0.014 25.3 14.3 30 504-533 104-133 (222)
349 PF04859 DUF641: Plant protein 27.9 1.8E+02 0.004 26.9 6.3 54 204-264 77-130 (131)
350 cd00584 Prefoldin_alpha Prefol 27.7 3.2E+02 0.007 24.4 8.0 24 306-329 82-105 (129)
351 KOG0993 Rab5 GTPase effector R 27.6 8.8E+02 0.019 26.9 26.3 46 204-249 138-183 (542)
352 PRK10698 phage shock protein P 27.6 6.3E+02 0.014 25.3 19.2 44 302-345 33-76 (222)
353 KOG2264 Exostosin EXT1L [Signa 27.6 2.3E+02 0.0049 32.6 7.9 56 208-263 94-149 (907)
354 PF01920 Prefoldin_2: Prefoldi 27.5 3.2E+02 0.0069 23.2 7.6 32 455-486 13-44 (106)
355 PF07851 TMPIT: TMPIT-like pro 27.3 2.7E+02 0.0058 29.9 8.2 57 205-261 2-58 (330)
356 COG1730 GIM5 Predicted prefold 27.0 3.3E+02 0.0072 25.7 7.9 42 302-343 96-137 (145)
357 COG3883 Uncharacterized protei 26.8 7.4E+02 0.016 25.8 24.8 40 348-387 121-160 (265)
358 PF06698 DUF1192: Protein of u 26.8 1.5E+02 0.0032 23.8 4.7 23 457-479 24-46 (59)
359 PF07058 Myosin_HC-like: Myosi 26.7 8E+02 0.017 26.1 15.0 76 435-510 46-133 (351)
360 TIGR02449 conserved hypothetic 26.6 3.6E+02 0.0077 22.1 8.3 48 212-259 5-52 (65)
361 PF10234 Cluap1: Clusterin-ass 26.4 7.5E+02 0.016 25.7 14.2 52 447-508 162-213 (267)
362 PF09766 FimP: Fms-interacting 26.3 8.4E+02 0.018 26.2 13.1 118 219-345 3-132 (355)
363 PF12777 MT: Microtubule-bindi 26.2 1.8E+02 0.004 30.9 7.0 29 69-97 71-99 (344)
364 PRK09973 putative outer membra 26.1 3.4E+02 0.0073 23.4 7.1 44 203-253 27-70 (85)
365 PF07412 Geminin: Geminin; In 25.9 3E+02 0.0066 27.3 7.8 31 313-343 110-140 (200)
366 PF10211 Ax_dynein_light: Axon 25.9 6.3E+02 0.014 24.6 12.8 34 401-438 69-102 (189)
367 PRK15178 Vi polysaccharide exp 25.6 9.6E+02 0.021 26.7 14.0 98 359-470 240-337 (434)
368 TIGR03495 phage_LysB phage lys 25.6 5.5E+02 0.012 23.9 10.0 55 479-533 41-95 (135)
369 KOG3564 GTPase-activating prot 25.6 2.7E+02 0.0059 31.3 8.0 53 206-258 27-79 (604)
370 PF15188 CCDC-167: Coiled-coil 25.5 2.4E+02 0.0052 24.3 6.1 31 413-443 5-35 (85)
371 TIGR00219 mreC rod shape-deter 25.4 2.2E+02 0.0048 29.6 7.2 50 312-376 57-106 (283)
372 KOG1029 Endocytic adaptor prot 25.4 1.3E+03 0.027 28.0 29.2 91 446-536 471-579 (1118)
373 PF03978 Borrelia_REV: Borreli 25.3 4.9E+02 0.011 24.9 8.6 76 456-531 30-109 (160)
374 PF10393 Matrilin_ccoil: Trime 25.1 1.7E+02 0.0037 22.4 4.6 33 42-75 14-46 (47)
375 COG5509 Uncharacterized small 24.9 1.3E+02 0.0029 24.1 4.1 32 448-479 26-57 (65)
376 KOG4603 TBP-1 interacting prot 24.8 6.6E+02 0.014 24.5 11.8 100 324-445 89-188 (201)
377 PF09325 Vps5: Vps5 C terminal 24.6 6.6E+02 0.014 24.5 17.9 57 207-263 135-191 (236)
378 PF15290 Syntaphilin: Golgi-lo 24.6 8.4E+02 0.018 25.6 13.7 50 323-383 119-168 (305)
379 TIGR03495 phage_LysB phage lys 24.5 5.8E+02 0.013 23.8 9.5 68 204-271 23-90 (135)
380 PF13166 AAA_13: AAA domain 24.4 1.1E+03 0.025 27.2 22.6 24 47-70 91-114 (712)
381 PF09006 Surfac_D-trimer: Lung 24.3 1.3E+02 0.0029 22.9 3.8 28 515-542 1-28 (46)
382 PRK02119 hypothetical protein; 24.3 1.2E+02 0.0026 25.1 4.0 40 60-99 3-42 (73)
383 PF06632 XRCC4: DNA double-str 24.1 4.1E+02 0.0088 28.6 9.0 53 414-478 159-211 (342)
384 KOG1962 B-cell receptor-associ 23.9 7.6E+02 0.016 24.9 11.4 51 219-269 156-206 (216)
385 PF13094 CENP-Q: CENP-Q, a CEN 23.8 6E+02 0.013 23.7 13.8 37 449-485 121-157 (160)
386 PF03999 MAP65_ASE1: Microtubu 23.5 48 0.001 38.3 2.1 40 302-341 86-125 (619)
387 PLN02678 seryl-tRNA synthetase 23.5 5.4E+02 0.012 28.7 10.1 69 366-435 38-107 (448)
388 PF06632 XRCC4: DNA double-str 23.2 9E+02 0.019 26.0 11.4 50 484-533 157-207 (342)
389 cd00890 Prefoldin Prefoldin is 23.2 5.2E+02 0.011 22.7 10.5 40 399-438 87-126 (129)
390 PF15188 CCDC-167: Coiled-coil 23.1 4.9E+02 0.011 22.4 8.1 30 303-332 39-68 (85)
391 KOG4807 F-actin binding protei 23.1 1E+03 0.022 26.2 26.8 74 476-549 517-591 (593)
392 PRK03598 putative efflux pump 23.1 8.6E+02 0.019 25.3 15.8 31 409-439 141-171 (331)
393 PF15290 Syntaphilin: Golgi-lo 23.1 9E+02 0.019 25.4 10.9 30 473-502 119-148 (305)
394 PF06156 DUF972: Protein of un 22.6 4.5E+02 0.0098 23.4 7.6 66 203-268 4-81 (107)
395 PF04420 CHD5: CHD5-like prote 22.5 3E+02 0.0066 26.1 7.0 53 332-387 44-96 (161)
396 PF11802 CENP-K: Centromere-as 22.4 9E+02 0.019 25.2 15.9 55 413-473 96-150 (268)
397 PRK10093 primosomal replicatio 22.3 7.3E+02 0.016 24.1 11.2 26 412-437 142-167 (171)
398 PF06810 Phage_GP20: Phage min 22.3 5.3E+02 0.012 24.4 8.5 17 243-259 52-68 (155)
399 cd07595 BAR_RhoGAP_Rich-like T 22.1 6.5E+02 0.014 25.6 9.7 26 301-326 166-191 (244)
400 PF03999 MAP65_ASE1: Microtubu 22.1 3.4E+02 0.0074 31.4 8.6 236 302-544 144-412 (619)
401 PF14915 CCDC144C: CCDC144C pr 21.9 9.7E+02 0.021 25.4 32.9 43 202-244 1-47 (305)
402 PF06428 Sec2p: GDP/GTP exchan 21.9 3.2E+02 0.007 24.1 6.4 34 235-268 8-42 (100)
403 TIGR02977 phageshock_pspA phag 21.9 7.8E+02 0.017 24.3 14.1 37 354-390 24-60 (219)
404 PF10018 Med4: Vitamin-D-recep 21.6 4.6E+02 0.0099 25.4 8.2 53 209-262 11-63 (188)
405 PF05615 THOC7: Tho complex su 21.5 6.2E+02 0.013 23.0 12.4 52 411-462 79-131 (139)
406 TIGR00414 serS seryl-tRNA synt 21.4 6.2E+02 0.013 27.8 10.1 75 361-436 30-106 (418)
407 PF04568 IATP: Mitochondrial A 21.4 2.9E+02 0.0063 24.5 6.0 41 302-343 54-98 (100)
408 PF07303 Occludin_ELL: Occludi 21.4 4.2E+02 0.0092 23.3 7.1 74 303-377 15-96 (101)
409 PF04508 Pox_A_type_inc: Viral 21.2 92 0.002 20.3 2.1 16 412-427 7-22 (23)
410 KOG4603 TBP-1 interacting prot 20.9 5.2E+02 0.011 25.2 8.0 82 462-545 80-167 (201)
411 PF10212 TTKRSYEDQ: Predicted 20.8 1.3E+03 0.028 26.4 21.7 48 222-269 303-350 (518)
412 PF04102 SlyX: SlyX; InterPro 20.8 1.5E+02 0.0032 24.2 3.8 37 63-99 1-37 (69)
413 KOG1666 V-SNARE [Intracellular 20.7 4.1E+02 0.009 26.7 7.5 47 445-491 34-92 (220)
414 PF15294 Leu_zip: Leucine zipp 20.6 9.9E+02 0.022 25.0 27.2 75 299-373 131-209 (278)
415 PRK05431 seryl-tRNA synthetase 20.5 6.6E+02 0.014 27.7 10.0 70 366-436 33-103 (425)
416 PF05529 Bap31: B-cell recepto 20.5 5.4E+02 0.012 24.8 8.5 40 220-259 153-192 (192)
417 cd07666 BAR_SNX7 The Bin/Amphi 20.4 9.3E+02 0.02 24.6 18.1 47 412-474 162-208 (243)
418 cd07657 F-BAR_Fes_Fer The F-BA 20.3 9E+02 0.019 24.4 19.0 112 205-333 117-231 (237)
419 PF07544 Med9: RNA polymerase 20.2 3.9E+02 0.0084 22.5 6.4 55 473-531 23-77 (83)
420 PF15134 DUF4570: Domain of un 20.1 5.6E+02 0.012 23.1 7.5 60 303-364 27-86 (109)
421 PF07334 IFP_35_N: Interferon- 20.1 80 0.0017 26.6 2.1 21 324-344 3-23 (76)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=308.22 Aligned_cols=362 Identities=21% Similarity=0.230 Sum_probs=316.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008671 152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQ 231 (557)
Q Consensus 152 ~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~ 231 (557)
++..++.|+.++++.++.++..+|.+....+.++..+++.. ......++.|..+|.+||.+++.||.+|+.++.++.
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~---e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~ 79 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRVE---EALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS 79 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999888710 012338889999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhc-cCCcccccCCCCCCCCCCccchhhhchHHHHHHHH
Q 008671 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVT-KGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310 (557)
Q Consensus 232 ~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~-~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~le 310 (557)
.+.|+++..++++.++.+++|+++|++++.+++.+.+..-.... .+.++||. |||+.+|..++|.++ +.+|...++
T Consensus 80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~~~~~~~t~~~t~-~~~l~~~ie 156 (698)
T KOG0978|consen 80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNGSLSGTITVNSTE-LEELRDEIE 156 (698)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--cccccCcccccchhh-hhhhccchh
Confidence 99999999999999999999999999999999998887443332 23333332 333444444468877 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (557)
Q Consensus 311 E~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~ 388 (557)
|++.+|+.|+.+|+.++..+..++.+++.+++.++.. +++..|..|+|++ ++..+....
T Consensus 157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~~~-------------- 217 (698)
T KOG0978|consen 157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQRKT-------------- 217 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccccc--------------
Confidence 9999999999999999999999999999999999644 8888899999998 444333332
Q ss_pred HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHH
Q 008671 389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQ 467 (557)
Q Consensus 389 rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk 467 (557)
| +++++.... .++++++.++.|+.+|++++++|+++..++|. +||++||++|+|++++||++|+
T Consensus 218 ------~---~~~e~~~~~------~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~ 282 (698)
T KOG0978|consen 218 ------M---ESDEAINSK------KVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLK 282 (698)
T ss_pred ------c---hhhhhhccc------hHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 444444433 38999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHccCCCCc
Q 008671 468 RQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRRESTDS 546 (557)
Q Consensus 468 ~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~-~~~~~l~~~~~eL~l~ldmy~~e~~d~ 546 (557)
+..++|+++++++.++|..+.|+...++.++...+.+.++|...+.++.+++ ..++.+..+.++++.+++++.+++.+.
T Consensus 283 ~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~ 362 (698)
T KOG0978|consen 283 EYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKE 362 (698)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred cchhhhh
Q 008671 547 RFVNLLE 553 (557)
Q Consensus 547 rd~~e~~ 553 (557)
|||..++
T Consensus 363 ~di~~~k 369 (698)
T KOG0978|consen 363 RDILVAK 369 (698)
T ss_pred HhHHHHH
Confidence 9999875
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=98.57 E-value=0.0049 Score=73.04 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~ 388 (557)
...|..|+.++..+++.+..+...++.+..+.+...
T Consensus 536 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 571 (880)
T PRK02224 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345666666666666666666655555555555543
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=0.025 Score=70.17 Aligned_cols=42 Identities=5% Similarity=0.082 Sum_probs=28.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHccC
Q 008671 501 CETLLASSADQVAEIHKLQAMVQDLTDSN--LELKLILDMYRRE 542 (557)
Q Consensus 501 ~~~l~~~~~~~~~~i~~l~~~~~~l~~~~--~eL~l~ldmy~~e 542 (557)
+..|....+...++++.+...|..|+..- .+.+.+-+-|+..
T Consensus 1063 ~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka 1106 (1311)
T TIGR00606 1063 IDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREM 1106 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 33445556666788888888888877766 4567777777654
No 4
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.30 E-value=0.026 Score=69.34 Aligned_cols=259 Identities=19% Similarity=0.272 Sum_probs=156.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCC----
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGA---- 278 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~---- 278 (557)
.+...+...+...++..+.........+..++.....++........+|..+..++..++-+++.+.....+..|+
T Consensus 465 ~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~f 544 (1201)
T PF12128_consen 465 EEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEF 544 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHH
Confidence 3455556666666666666666666666666666666666666666666666666666666555554221111111
Q ss_pred ---------------------------cccccCCCCCCCCCCcc----chhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 279 ---------------------------FFPVLNLGNKHVAGDRV----RDEQRDLRDMESVHKELMDQASHQLLELKGLH 327 (557)
Q Consensus 279 ---------------------------~~~~~~~~~~~~~~~~~----~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~ 327 (557)
|.-.++++++++.|=.. ++.+ ++...+.++.+-...+..++..+....
T Consensus 545 L~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~p-d~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 545 LRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVP-DYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred HHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCc-hhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 11011111123333222 1110 122233444444445555555554443
Q ss_pred HHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhh
Q 008671 328 DGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRS 407 (557)
Q Consensus 328 ~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~ 407 (557)
++..+.++. . ...|..++........++...+..++.|+.++.++..+..+.. .+ ++.
T Consensus 624 ~~~e~~l~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~-----~~~ 681 (1201)
T PF12128_consen 624 EELEKQLKQ---I------------NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK--EE-----RKE 681 (1201)
T ss_pred HHHHHHHHH---H------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HH-----HHH
Confidence 332222221 1 3467788888888889999999998888888888876642221 11 222
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008671 408 SAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRAD 486 (557)
Q Consensus 408 ~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~e~~~lr~e 486 (557)
.. +.++..++..+.++..+.+.+..++.....+.. ...+..+..+.+.+...+.+++.++... .++..++..+...
T Consensus 682 ~~--~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~-~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 682 QI--EEQLNELEEELKQLKQELEELLEELKEQLKELR-NELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 688999999999999999999998887655555 5788888999999999999999998665 5566666666665
Q ss_pred H
Q 008671 487 V 487 (557)
Q Consensus 487 ~ 487 (557)
.
T Consensus 759 ~ 759 (1201)
T PF12128_consen 759 Y 759 (1201)
T ss_pred H
Confidence 4
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=98.30 E-value=0.02 Score=67.87 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS-KAFLSVKNQLEKSKSEVFKYQALFEK 379 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S-~~Yk~L~~Q~~~lkaeld~~R~l~ek 379 (557)
+..++..+.++..-++.-..++..+......+..++..+..++.+. ..+.++ ..+..+...+..+...++.++.....
T Consensus 351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444455555555554444555454444433 111111 23455555566666666666666666
Q ss_pred HHHHHHHHHHH
Q 008671 380 LQVEKDNLAWR 390 (557)
Q Consensus 380 LQ~er~~~~rq 390 (557)
+++....+...
T Consensus 431 ~~~~~~~~~~~ 441 (880)
T PRK02224 431 LEATLRTARER 441 (880)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.17 E-value=0.0042 Score=72.20 Aligned_cols=350 Identities=19% Similarity=0.207 Sum_probs=185.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhc-ccCCchh----hh-hccccHHHHHHHHHHHHHHHHHhHHH---
Q 008671 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-LQDGGSK----QK-ASSNLQSEVKNLRLALMDLHLKHKSL--- 226 (557)
Q Consensus 156 L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~-~~~~~~~----~~-~n~~L~~E~~~Lq~~~~~L~~khk~l--- 226 (557)
|......+...|.++....+.....++.|..+|.++ .+..++. .. --.++......|+..+......|..+
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~ 212 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQ 212 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 555666677777777777777777777788888654 2212211 00 22234445556666665554444222
Q ss_pred -HHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccc
Q 008671 227 -TRELQ---------SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVR 296 (557)
Q Consensus 227 -s~e~~---------~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~ 296 (557)
...++ .++.-+....+++..|+..|+++..++...+.+.+.....++... +.+.+
T Consensus 213 l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~-----------k~le~---- 277 (775)
T PF10174_consen 213 LHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLD-----------KQLEV---- 277 (775)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-----------HHHHH----
Confidence 22222 233333445666666666666666555555443322211111100 00000
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHH----
Q 008671 297 DEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEV---- 370 (557)
Q Consensus 297 ~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkael---- 370 (557)
-.+ ..-.|+..++.+.--.+.+..||..++.++..+..+...++..+.-. +.-.--..|-.|++-+.-|...+
T Consensus 278 ~~s-~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 278 YKS-HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 000 12345666888888888888888888888888888777775443311 11111224555555554444333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHH----HHHHHHHHHHH----------
Q 008671 371 ---FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEI----QKQIDEKNRIE---------- 433 (557)
Q Consensus 371 ---d~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~L----aqvr~ere~L~---------- 433 (557)
......+++++.++..+.-.+-++. +.-++.-+.+-.+..+|..|+..| .++..+++-|.
T Consensus 357 ~~l~kk~~~~~~~qeE~~~~~~Ei~~l~---d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~ 433 (775)
T PF10174_consen 357 SQLEKKQAQIEKLQEEKSRLQGEIEDLR---DMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDE 433 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 3444444455566655543321222 333444444444556666666666 23333444444
Q ss_pred --HHHHHHhcCCCc-hhHHH--------HHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 434 --MRLEEASREPGR-KEIIA--------EFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKV 498 (557)
Q Consensus 434 --~e~eqa~~~~~~-k~i~~--------Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~ 498 (557)
..++.++.+-.+ ..-+. +...=+..+++++..+++.+..+ -|....+..++.++.++.+...++.
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~ 513 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKD 513 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhh
Confidence 566666666654 11211 22233456667777777776555 4556667777788878777777777
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 499 KECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 499 ~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
.+++.|.--+-.+-.++..+...+++
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77776655555554445555554444
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.11 E-value=0.026 Score=62.91 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 008671 452 FRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADV 487 (557)
Q Consensus 452 mr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~ 487 (557)
+.+-+.+...++..|+.++.+. ++-..+-.+|..++
T Consensus 362 l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 362 LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777555 44444444444444
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.04 E-value=0.074 Score=64.34 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHHh
Q 008671 161 PRTKNIVSNILAAVD 175 (557)
Q Consensus 161 ~~tk~~l~~l~~~~d 175 (557)
..+..-+.++-+.+.
T Consensus 175 ~~t~~nL~r~~d~l~ 189 (1179)
T TIGR02168 175 KETERKLERTRENLD 189 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.97 E-value=0.074 Score=62.10 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCC
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNK 288 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~ 288 (557)
....+..+..||+.+-.+..++..+++.+..++.++..++..|+.+..++.+..-.| ...|.+..+++.
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L--------~~~g~~~~~~~~--- 177 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML--------QSKGLSAEAEEE--- 177 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCcccchhh---
Confidence 666788888899999999999999888888888888888888888888887776666 223432211100
Q ss_pred CCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHH
Q 008671 289 HVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGL----------------------------------HDGRIKVL 334 (557)
Q Consensus 289 ~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l----------------------------------~~e~~~l~ 334 (557)
+....+ .+.+++..+..+..+-..+-.+...+ ...+..+.
T Consensus 178 ----~~~~~~--~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le 251 (775)
T PF10174_consen 178 ----DNEALR--RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLE 251 (775)
T ss_pred ----hhHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001011 13344333333333333332222111 11111133
Q ss_pred HHHHHHhhhcccccccccChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhh
Q 008671 335 QQLYNLQNTLKSVKCLSSSKA-------FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRS 407 (557)
Q Consensus 335 ~e~~~Lk~~l~d~~~I~~S~~-------Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~ 407 (557)
.++..|+.... .++.+ ...-++..-.+|+.+|+++..+..=-+|--++..+. +.. .+.+.-.++-
T Consensus 252 ~Ei~~L~~~~~-----~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l-~~~--~~~~~d~r~h 323 (775)
T PF10174_consen 252 DEIYRLRSRGE-----LSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRL-ETL--EEQDSDMRQH 323 (775)
T ss_pred HHHHHHHhccc-----ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HhhHHHHHHH
Confidence 44444433321 11111 112222233377777777777433333333333332 111 1222222555
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHH
Q 008671 408 SAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHIL 483 (557)
Q Consensus 408 ~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~l 483 (557)
+.++...+...+..-..+..+.|.|+.+++.+....+++. .-+..++.+++-+.++|... .-...+|..|
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~------~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ------AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777777777777777777766666532 23444555666666666444 3356677777
Q ss_pred HHHHHhHHHHHHHhhhhhHHHHhhhh
Q 008671 484 RADVLSLTNVLERKVKECETLLASSA 509 (557)
Q Consensus 484 r~e~~sl~~~l~~k~~e~~~l~~~~~ 509 (557)
...+++|...|..|......+-.|+.
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777666666655
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=0.13 Score=63.87 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcc
Q 008671 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRAR 104 (557)
Q Consensus 48 ~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~ 104 (557)
..+-+-+.....++..++.++..+++..+..+..+..+..--+++...+..+.....
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777788888888888888888888888888888888888888876665443
No 11
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.067 Score=61.28 Aligned_cols=316 Identities=15% Similarity=0.142 Sum_probs=189.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcc
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~ 280 (557)
.|..|...+..++.....++++...|..++......+.-.+..+..+...++...-...+..+.++.+...... .|. +
T Consensus 56 e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t-~~~-~ 133 (698)
T KOG0978|consen 56 ENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT-YGN-G 133 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCC-c
Confidence 34468888889999999999999999999999999999999999999999999999999999999888643222 221 1
Q ss_pred cccCCCCCCCCCCc------c--c----hhh--hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Q 008671 281 PVLNLGNKHVAGDR------V--R----DEQ--RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQ------LYNL 340 (557)
Q Consensus 281 ~~~~~~~~~~~~~~------~--~----~~~--k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e------~~~L 340 (557)
.|..++.+++.... + . +-+ ..++-++..+.+..........+|..+-......+.+ |+.+
T Consensus 134 ~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l 213 (698)
T KOG0978|consen 134 NGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEEL 213 (698)
T ss_pred ccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhc
Confidence 12212222211100 0 0 111 1145667788888888888888888888888888888 4444
Q ss_pred hhhc-ccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHh
Q 008671 341 QNTL-KSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLG 419 (557)
Q Consensus 341 k~~l-~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE 419 (557)
+..- ...+.|- +..|..+-+-+.....+.+..+.+.+-...+.+.+.---.|+. . + -.+.-.....+...+
T Consensus 214 ~~~~~~~~e~~~-~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~---~---L-~Ssl~e~~~~l~~~~ 285 (698)
T KOG0978|consen 214 QRKTMESDEAIN-SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMR---H---L-ISSLQEHEKLLKEYE 285 (698)
T ss_pred ccccchhhhhhc-cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHH---H---H-HHHHHHHHHHHHHHH
Confidence 4443 2235555 5668888888888888888888888888777776431111221 1 0 111111122333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 008671 420 IEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVK 499 (557)
Q Consensus 420 ~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~ 499 (557)
..+-....++.-|+..+--+...-+ ...++..+|....+..+.++.+--..+ +..++...+.+...+..
T Consensus 286 ~~~k~t~~~~~~lr~~~~s~~~~~~--~~~~~~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--- 354 (698)
T KOG0978|consen 286 RELKDTESDNLKLRKQHSSAADSLE--SKSRDLESLLDKIQDLISQEAELSKKL------RSKLLESAKKLKILLRE--- 354 (698)
T ss_pred HHHhcccchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHH---
Confidence 4555555566666655555444433 245555555555555555554433211 11111111111111111
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCCCccc
Q 008671 500 ECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRF 548 (557)
Q Consensus 500 e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~~d~rd 548 (557)
.++--....+|...+...... +++.+|||+.-+.+.+|
T Consensus 355 -----~~~e~~k~~di~~~k~el~~~------~~~~le~~k~~~ke~~~ 392 (698)
T KOG0978|consen 355 -----KDRESQKERDILVAKSELLKT------NELRLEMLKSLLKEQRD 392 (698)
T ss_pred -----HHHHhhhhHhHHHHHHHHHHH------HHHHHHHHhCCCHHHHh
Confidence 111111233444444433322 89999999999999888
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.91 E-value=0.069 Score=64.74 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=22.5
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Q 008671 499 KECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYR 540 (557)
Q Consensus 499 ~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~ 540 (557)
.++..+.........++..++..+..++..-..++...+-|.
T Consensus 462 ~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~ 503 (1164)
T TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555566666666666666556665554443
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.80 E-value=0.18 Score=61.00 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l 344 (557)
+..+..+++.+......--.++..++.+...+..++..++..+
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444455444444444444444443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.21 Score=61.34 Aligned_cols=59 Identities=31% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
...|...+..+.........++..+...+...+..+.++..++..+..+++.+...+..
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544555555555555555555555555555554443
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=97.69 E-value=0.23 Score=58.99 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 354 KAFLSVKNQLEKSKSEVFKYQALFEKL 380 (557)
Q Consensus 354 ~~Yk~L~~Q~~~lkaeld~~R~l~ekL 380 (557)
..|..++.++..+...+...+..++++
T Consensus 525 ~~~~~l~~~~~~l~~~l~~l~~~l~~~ 551 (880)
T PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKELEKL 551 (880)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355556666666555555555544433
No 16
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.62 E-value=0.2 Score=56.38 Aligned_cols=213 Identities=19% Similarity=0.225 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL----KSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 307 ~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l----~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
.+++-.+..-+.=+.+|....+++..+.+++..+-... ... +.+. .-..-......|..++.++++.++..+
T Consensus 116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~---~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 116 AELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVS---AAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445566665555555555555553321 111 2222 334445556667777777777765544
Q ss_pred HHHHHHHHHHHHhhhh---------hchHH---HHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCC----
Q 008671 382 VEKDNLAWRETELNMK---------IDLVD---VFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASR-EPG---- 444 (557)
Q Consensus 382 ~er~~~~rq~~E~~~k---------~E~~e---~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~-~~~---- 444 (557)
........+.++..+. .+..+ -....... -....+|+..|..-..+-..|..++..... ...
T Consensus 193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e-~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~ 271 (522)
T PF05701_consen 193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEE-LEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAE 271 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4333222111111100 00000 00000000 033455666666666777777777777444 111
Q ss_pred chhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 445 RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 445 ~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
.+.....+...+.+...+...++..| ..+..|+..|+..+.||+.-|++-..++..+..+...-...|..|...+..
T Consensus 272 ~~~~~~~~~~~l~s~~~ELe~ak~~L---~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 272 AKEKSSELQSSLASAKKELEEAKKEL---EKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 12334444445555555555555554 567788899999999999999888888888887776666666666655544
Q ss_pred Hh
Q 008671 525 LT 526 (557)
Q Consensus 525 l~ 526 (557)
++
T Consensus 349 ~r 350 (522)
T PF05701_consen 349 TR 350 (522)
T ss_pred HH
Confidence 43
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.59 E-value=0.44 Score=59.70 Aligned_cols=233 Identities=18% Similarity=0.257 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCC
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~ 291 (557)
|....+.++.-++.+..++.....+++.++.++.+|.+++..+..+++-+-+ +..
T Consensus 942 l~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k-------------------------~~e 996 (1822)
T KOG4674|consen 942 LESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTK-------------------------GKE 996 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------------chh
Confidence 4455555666667777777777777777777777777777776666522111 111
Q ss_pred CCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHH
Q 008671 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSE 369 (557)
Q Consensus 292 ~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkae 369 (557)
+...+..+.+.-+..++......++.=..-+..++.++......+...+.+-... .-..-|..|.-|+.+|..++++
T Consensus 997 -~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e 1075 (1822)
T KOG4674|consen 997 -DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDE 1075 (1822)
T ss_pred -hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112333346667778888888888888888888888888877777777664422 2222245888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhhhhhchHHHHHhhhh------hhhhHHH-------------------HHhHHH
Q 008671 370 VFKYQALFEKLQVEKDNLA--WRETELNMKIDLVDVFRRSSA------VTDSKIA-------------------DLGIEI 422 (557)
Q Consensus 370 ld~~R~l~ekLQ~er~~~~--rq~~E~~~k~E~~e~~~~~~~------~~~~~v~-------------------~lE~~L 422 (557)
+..++...++.++.-..+. |-+.+.+++-|....-.+.-. .+..+|. +|-.-+
T Consensus 1076 ~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv 1155 (1822)
T KOG4674|consen 1076 LLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIV 1155 (1822)
T ss_pred HHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHH
Confidence 8888888888888777775 444444444332211111000 0011221 222233
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 423 QKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 423 aqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
.-+|++++-+.+++.-+..++-+ +.-+..+...|..|+.-........
T Consensus 1156 ~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~ 1204 (1822)
T KOG4674|consen 1156 SFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS 1204 (1822)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777766666665 5555555555555555555544444
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.56 E-value=0.14 Score=53.22 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHHHHHHHH--------hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLK--------HKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~k--------hk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
.|..+|..|...+..+..+ ...|..++..++..+...-.++..|..+++.+..+++..+.|+...
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4677777777777777777 2335566666666666666666666666666666666666666544
No 19
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.54 E-value=0.15 Score=53.08 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~ 491 (557)
-.+|...|..||.+|+.+-..+-+-....- +.-+.+++.-+..-.......+.|+.+ ....+..++.++.+++
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y-~~k~~~l~~~~~~~~~~~~~~~~E~~~---~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWY-QSKLEELRQQSEKSSEELESAKEELKE---LRRQIQSLQAELESLR 236 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhc-ccccccccccccccccccchhHhHHHH---HHhhhhHhhhhhhccc
Confidence 456788889999999877766655333222 233455555555556666666666633 3333444444444433
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.51 E-value=0.61 Score=59.30 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=12.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
...|....++++......|.+++..+
T Consensus 1281 ~lee~e~~~~~~~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1281 QLEEAEAKLSALSRDKQALESQLEEL 1306 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555554444
No 21
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.50 E-value=0.35 Score=56.28 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cc-cccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KC-LSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~-I~~S~~Yk~L~~Q~~~lkaeld~~R~l~e 378 (557)
++.+.-+-+-+.+-|..=-.|++.+.+.+-.+.-+++-||.+..+- +. +-+|-+|+.|-.|...|+..+-++|-+
T Consensus 313 iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl-- 390 (1243)
T KOG0971|consen 313 IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDL-- 390 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3444445555566677777899999999999999999999998865 44 788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh-hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 008671 379 KLQVEKDNLAWRETELNMK-IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVS 457 (557)
Q Consensus 379 kLQ~er~~~~rq~~E~~~k-~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~Lis 457 (557)
.-.++.-+.+-.+|+-+| .|..|+ ++.+..+-.++.++|.+++-+.-. .=++-| -.+|=..+.
T Consensus 391 -sA~ek~d~qK~~kelE~k~sE~~eL-~r~kE~Lsr~~d~aEs~iadlkEQ----------VDAAlG----AE~MV~qLt 454 (1243)
T KOG0971|consen 391 -SASEKQDHQKLQKELEKKNSELEEL-RRQKERLSRELDQAESTIADLKEQ----------VDAALG----AEEMVEQLT 454 (1243)
T ss_pred -chHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhc----HHHHHHHHH
Confidence 566666666433455333 333333 222222334455555444433221 222333 112222222
Q ss_pred ----ccHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 008671 458 ----SFPEDMSAMQRQLSKY----------KEAALDIHI-LRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMV 522 (557)
Q Consensus 458 ----Slq~~~~~Lk~ev~R~----------kea~~e~~~-lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~ 522 (557)
-|.+++..|+-+|..+ -|.+.+... ||.++.-++.....-..++..-.....+....|...+..+
T Consensus 455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelv 534 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELV 534 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2344444444444332 222222221 5555554433221111222222333445567788899999
Q ss_pred HHHhhhHHHHHHH
Q 008671 523 QDLTDSNLELKLI 535 (557)
Q Consensus 523 ~~l~~~~~eL~l~ 535 (557)
..|++..++++.-
T Consensus 535 a~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 535 AHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988888763
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.46 E-value=0.71 Score=58.73 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
..+++.....+..+.+.+..++..+.+..+++..+.+.++..+.+++.++...+.+...|
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555544333
No 23
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.44 E-value=0.38 Score=55.75 Aligned_cols=188 Identities=18% Similarity=0.295 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccc--cccccChhHHHHHHHHHH-------HHHHH
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL---KSV--KCLSSSKAFLSVKNQLEK-------SKSEV 370 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l---~d~--~~I~~S~~Yk~L~~Q~~~-------lkael 370 (557)
..|..++.|++.--.+-+++--+|.+||+.|++++..||--- .-. ++-+=..+-.+|++|++. .+.++
T Consensus 79 ~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql 158 (717)
T PF09730_consen 79 KRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL 158 (717)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999997432 211 222223455566666666 34444
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhhhhch----------------------------H-------------------
Q 008671 371 FKYQALFEKLQVEKDNLA--WRETELNMKIDL----------------------------V------------------- 401 (557)
Q Consensus 371 d~~R~l~ekLQ~er~~~~--rq~~E~~~k~E~----------------------------~------------------- 401 (557)
+++ ++.||.||.+-. |++-...|..+. +
T Consensus 159 eEA---Lesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 235 (717)
T PF09730_consen 159 EEA---LESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNG 235 (717)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhccccc
Confidence 444 456899987653 332233222111 0
Q ss_pred ---------------------HHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhcc
Q 008671 402 ---------------------DVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSF 459 (557)
Q Consensus 402 ---------------------e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSl 459 (557)
+++--... ++|..|+..|.||-.|+..|...++..-..-.. +....++..=|+-|
T Consensus 236 ~~~~~~~~~~~~~~p~~~lv~DLfSEl~~---~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L 312 (717)
T PF09730_consen 236 DNRMSTPRKSESFSPAPSLVSDLFSELNL---SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRL 312 (717)
T ss_pred ccccCCCCCCCCCCCCCcccchhhhhcch---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222 689999999999999999999999884333333 44556666666666
Q ss_pred HHHHHHHHH---------------------------------H--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 460 PEDMSAMQR---------------------------------Q--LSKYKEAALDIHILRADVLSLTNVLER 496 (557)
Q Consensus 460 q~~~~~Lk~---------------------------------e--v~R~kea~~e~~~lr~e~~sl~~~l~~ 496 (557)
-.++..|.. + -.+|+.|..++..++.++..|+.-+..
T Consensus 313 ~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~ 384 (717)
T PF09730_consen 313 TEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNE 384 (717)
T ss_pred HHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655 1 178899999999999999888765443
No 24
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.37 E-value=0.47 Score=54.65 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.+......++.++..||.++-.+..+.+.+||.++.++..+++-+.+||++..++.+...-|
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556677889999999999999999999999999999999999999999999998887665
No 25
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.21 E-value=0.57 Score=58.76 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
++|+..++...+-...-..++.++.++...+...++.+.....
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555554433
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.18 E-value=1.3 Score=55.89 Aligned_cols=106 Identities=25% Similarity=0.298 Sum_probs=68.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRADVLSLTN 492 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~e~~~lr~e~~sl~~ 492 (557)
.+..+++.|...-.+...|..++..+. --+.+.+.++.+...-..+++..+..| .++-+.|..+..++-|+..
T Consensus 899 d~~~~~~~Lr~~~eq~~~l~~~L~~a~------s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~ 972 (1822)
T KOG4674|consen 899 DATILEDTLRKELEEITDLKEELTDAL------SQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEE 972 (1822)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444455554444444444455555543 346677888888888888999998888 6778888888888888876
Q ss_pred HHHHhhhhhHHHHhh-----------hhHHHHHHHHHHHHHHHH
Q 008671 493 VLERKVKECETLLAS-----------SADQVAEIHKLQAMVQDL 525 (557)
Q Consensus 493 ~l~~k~~e~~~l~~~-----------~~~~~~~i~~l~~~~~~l 525 (557)
-+..-..+|..|.+. .+..+.+|.+++..+..+
T Consensus 973 ~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen 973 ELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHH
Confidence 665555666666544 444555555555554433
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.18 E-value=0.62 Score=52.29 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~ 347 (557)
+.++++++.-++..-..=..|+..|..++-.|-.++..++..+.++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777777777777777778888888888888888888877655
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.87 Score=53.82 Aligned_cols=214 Identities=16% Similarity=0.182 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+.+++.+++.++.-+..--.++++-..+...|+-|.+.|+-.+...+ .....+..+.+.++.++..+++-+.+.+
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k-----~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLK-----QQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78888999999888888888888888888888888888888776442 2445667777778888888888777777
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccH
Q 008671 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFP 460 (557)
Q Consensus 382 ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq 460 (557)
.+.+.....+.+. ..+....++++..+...-..|..+..+...+.+.--.+..+ ......++.-|+++-
T Consensus 864 ~~~~~~~~el~~~----------k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 864 KDVKKAQAELKDQ----------KAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLL 933 (1174)
T ss_pred hHHHHHHHHHHHH----------HHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence 7776666553211 11111124555555555555555555544444442222222 233444455555555
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHH--------HhhhhhHHHHhhhhHHHHHHHHH
Q 008671 461 EDMSAMQRQLSKY--------------KEAALDIHILRADVLSLTNVLE--------RKVKECETLLASSADQVAEIHKL 518 (557)
Q Consensus 461 ~~~~~Lk~ev~R~--------------kea~~e~~~lr~e~~sl~~~l~--------~k~~e~~~l~~~~~~~~~~i~~l 518 (557)
..+.=+-+|.+-+ ++|..++++|.....++..-+. +....+..|..+-..-...-..+
T Consensus 934 ~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI 1013 (1174)
T KOG0933|consen 934 KKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKI 1013 (1174)
T ss_pred HhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5555555554322 7888888888888877765444 33334444444444444444455
Q ss_pred HHHHHHHhhhHH
Q 008671 519 QAMVQDLTDSNL 530 (557)
Q Consensus 519 ~~~~~~l~~~~~ 530 (557)
+..|.+|.+.+.
T Consensus 1014 ~ktI~~lDe~k~ 1025 (1174)
T KOG0933|consen 1014 KKTIEKLDEKKR 1025 (1174)
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 29
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.13 E-value=0.68 Score=53.12 Aligned_cols=168 Identities=21% Similarity=0.305 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
-.|..|+..|+..+..|.+++.........+-......+.++.+|+..|+....+.....+-|+.+...+.++
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~------- 155 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA------- 155 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH-------
Confidence 3677888889999999998888877776766555566677777777777776665544444343332221110
Q ss_pred cCCCCCCCCCCccchhhhchHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcccc-cccc-cC
Q 008671 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMD---QASHQL----LELKGLHDGRIKVLQQLYNLQNTLKSV-KCLS-SS 353 (557)
Q Consensus 283 ~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~---lA~~Rl----~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~-~S 353 (557)
+-.+. ...+|+..+.|+.. ..++-. .-|+--+.-+..|.+.+..|+.++.+. +.|. -+
T Consensus 156 ----------SRAls---QN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 156 ----------SRALS---QNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred ----------HHHHH---hHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00011 13567777777765 334444 334444555566777777888777766 3333 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 354 ~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
.++..|+.|......++.+|.+-+..|..++..+-++
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999888888888877655
No 30
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.12 E-value=0.25 Score=51.55 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
+..+-.|+..+..|+.++..+|.++..|..+-.++=.++.-++ .++.++. ..+..+|..|-..|++...++..-
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv-----~dcv~QL-~~An~qia~LseELa~k~Ee~~rQ 232 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV-----LDCVKQL-SEANQQIASLSEELARKTEENRRQ 232 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH-----HHHHHHh-hhcchhHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999888866642222 2222332 234678888888887765544322
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 008671 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL----SKYKEAALDIHILRADVLSLTNVLERKVKECETLLASS 508 (557)
Q Consensus 433 ~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev----~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~ 508 (557)
|.+|.+|-+++ .|+|....|-..+..-+...+.....=..|+..|.+||
T Consensus 233 ---------------------------QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 233 ---------------------------QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 45577788888888888888888888888999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 008671 509 ADQVAEIHKLQAMVQDLTDS 528 (557)
Q Consensus 509 ~~~~~~i~~l~~~~~~l~~~ 528 (557)
++-++-+.+.+.++++++..
T Consensus 286 ~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 286 AECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999988753
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.11 E-value=1.3 Score=54.65 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------cccccChhHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV---------KCLSSSKAFLSVKNQLEKSKSEVFK 372 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~---------~~I~~S~~Yk~L~~Q~~~lkaeld~ 372 (557)
+..|...+............++..+......+...+..++..+... ++-..+.....++.+++.+..++.+
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666777777777777776666666665533 1112233444555555555555444
Q ss_pred HHHHHHHHHHHHH
Q 008671 373 YQALFEKLQVEKD 385 (557)
Q Consensus 373 ~R~l~ekLQ~er~ 385 (557)
+....+.++..-.
T Consensus 749 ~~~~~~~~~~~~~ 761 (1163)
T COG1196 749 LEEELEELQERLE 761 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=97.11 E-value=1 Score=53.48 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHH
Q 008671 329 GRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKY 373 (557)
Q Consensus 329 e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~ 373 (557)
+...+..++..+..++.++++ ..|..+...+..|+...++|
T Consensus 564 ~~~~~~~~~~~~~~~l~~L~~----~~~~~~~~~~~~l~~~~~~~ 604 (880)
T PRK03918 564 KLDELEEELAELLKELEELGF----ESVEELEERLKELEPFYNEY 604 (880)
T ss_pred HHHHHHHHHHHHHHHHhhhcc----chHHHHHHHHHHhhhhHHHH
Confidence 344444455555555555543 25667777777765544443
No 33
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.05 E-value=0.35 Score=47.14 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCC
Q 008671 210 KNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKH 289 (557)
Q Consensus 210 ~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~ 289 (557)
..|-..+.+|+.-.+.+..+...++..+...+.-...|..+++++.-.+--.. ++.-++
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----------qal~~a----------- 62 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----------QALQKA----------- 62 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-----------
Confidence 34555666777777777777777777777777777777777776654443332 121111
Q ss_pred CCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHH
Q 008671 290 VAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSE 369 (557)
Q Consensus 290 ~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkae 369 (557)
+.++. ++++|+.....+.+...+=+.+...+..+++.|..++..|+.+-.-. .....-++++...|-+.
T Consensus 63 ----K~l~e--EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl-----~~e~~~lk~~~~eL~~~ 131 (193)
T PF14662_consen 63 ----KALEE--ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL-----LAERDGLKKRSKELATE 131 (193)
T ss_pred ----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHhhhhHHHHHHHHHHh
Confidence 11122 47888888888888888888888888889999999999988874422 33444455555554333
Q ss_pred HHHHHHH---HHHHHHHHHHHHHH----HHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHH
Q 008671 370 VFKYQAL---FEKLQVEKDNLAWR----ETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQK 424 (557)
Q Consensus 370 ld~~R~l---~ekLQ~er~~~~rq----~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laq 424 (557)
...++.. ++.|-.-|++++.. +-+.. -..+-.+..+-+++.++..||..|.+
T Consensus 132 ~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~---~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 132 KATLQRQLCEFESLICQRDAILSERTQQIEELK---KTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332 24444555555422 10110 11123344555555555555555544
No 34
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.05 E-value=1.1 Score=53.04 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccC-----------hhHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS-----------KAFLSVKNQLEKSKSE 369 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S-----------~~Yk~L~~Q~~~lkae 369 (557)
+.-|+.+++|--+..-.=-.||+.+..+...+.+++..+..+-... -|+-++ +-|+--=--..++++.
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdR 265 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDR 265 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHH
Confidence 3445555555554444444566666666666666665555443322 222211 1222211112226667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 370 VFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 370 ld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
+++++..-..|+.++.-+--|+ ... ++ +.-..+.+++|+++-.+|.-.+.++++.+...++-..++-
T Consensus 266 veelkedN~vLleekeMLeeQL-q~l---ra----rse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQL-QKL---RA----RSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHH---Hh----ccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777776666666665444442 222 22 2222556899999999999999999999998887444443
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.01 E-value=0.9 Score=51.04 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD 273 (557)
Q Consensus 219 L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~ 273 (557)
...+++.+..-+..++..+.....+++-|.+++..+..+....+.-|.+++.+.+
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455555555555555566666666666666666666666666666666654433
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.97 E-value=1.2 Score=52.06 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHhhHHHH
Q 008671 60 EYSALENKFAQLKERQQPYDSTLKVVNKSWEEL 92 (557)
Q Consensus 60 e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL 92 (557)
...+|+++++-|+-+-.-|-..|.-+++.--||
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiql 264 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQL 264 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 378899999999998888888888887776554
No 37
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.96 E-value=1.3 Score=52.29 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDID--AKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~--~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
-+.+|......|++..--|-.+++.++... ...+++|-.|+..|.+.+.+...-+.|++.|-.|
T Consensus 265 RveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 265 RVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455555555566666666666666555 7778888888888888888888888887777633
No 38
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.76 E-value=1.7 Score=50.54 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
++|..||-.||..++.|..- -++|..+.-.+..++.++.-|..+||++.-=-+.+++.|
T Consensus 100 selEeENislQKqvs~Lk~s----QvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql 158 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQS----QVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL 158 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999887543 356666666666688888888888888776666666655
No 39
>PRK11637 AmiB activator; Provisional
Probab=96.76 E-value=1 Score=49.36 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 218 DLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 218 ~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
.+..+...+..++......+...+.++..++.+++.++.++...+.+++.
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444444444333
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.72 E-value=2.6 Score=52.21 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcc
Q 008671 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRAR 104 (557)
Q Consensus 48 ~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~ 104 (557)
....++..........++....+++.....-+..|....+--.++-..+.-|-...+
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455555566666777777777777777778888888888877666666654443
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.66 E-value=1.6 Score=48.97 Aligned_cols=112 Identities=8% Similarity=0.077 Sum_probs=73.1
Q ss_pred chHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 150 NQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRE 229 (557)
Q Consensus 150 ~~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e 229 (557)
..+...+..+.......+..+...+..+....+.+...+.. ....+...+..++..++.+..+...+..+
T Consensus 166 ~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~----------~~~~~~~~i~~l~~e~~~l~~~~~~l~~~ 235 (562)
T PHA02562 166 SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEE----------QRKKNGENIARKQNKYDELVEEAKTIKAE 235 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555544433333332 11123455677777778888888888888
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 230 ~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+..+++.+......+..+.+.|.++..++.+++..+..+...
T Consensus 236 l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 236 IEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777777777777888888888877777633
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.76 Score=54.29 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcccCCC
Q 008671 65 ENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSN 108 (557)
Q Consensus 65 E~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~~~~~ 108 (557)
...|++.+.+-+--++.+..-..-..-|.++|.-+.++.+....
T Consensus 250 ~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~ 293 (1174)
T KOG0933|consen 250 AHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMG 293 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555554444444444444555555555555555544443
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.49 E-value=3 Score=50.00 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+-+.++.+.+.++-..-+-.|++.+++....+..+...++.+.++ ..+++...+..++.++..+..++
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~------------~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIRE------------IENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888889999999999999999999999886543 34444455555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHH
Q 008671 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPE 461 (557)
Q Consensus 382 ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~ 461 (557)
..=+.-+.-.++.+ ....-.+..+|..+|..+.+++.+++++.-+...- +.-..+++-.+-.+.+
T Consensus 386 ~~~~~~~~~~~~e~---------e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~------~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 386 KQTNNELGSELEER---------ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE------EEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHhhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHH
Confidence 44433331111221 11111125788899999999999999887665432 1233344555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhhhhhH-----HH-------HhhhhH--HHHHHHHHHHHHHHHh
Q 008671 462 DMSAMQRQLSKYKEAALDIHI-LRADVLSLTNVLERKVKECE-----TL-------LASSAD--QVAEIHKLQAMVQDLT 526 (557)
Q Consensus 462 ~~~~Lk~ev~R~kea~~e~~~-lr~e~~sl~~~l~~k~~e~~-----~l-------~~~~~~--~~~~i~~l~~~~~~l~ 526 (557)
.|.....+++.++..+.+-.+ .=.-+.-+-..+++....++ +| --|.+. .-.--+.|.+-|+.-.
T Consensus 451 ~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh 530 (1074)
T KOG0250|consen 451 KIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSH 530 (1074)
T ss_pred HHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCH
Confidence 777777777777776655333 22223334444454443321 00 113333 3334577888888877
Q ss_pred hhHHHHHHHHHHHccC
Q 008671 527 DSNLELKLILDMYRRE 542 (557)
Q Consensus 527 ~~~~eL~l~ldmy~~e 542 (557)
....=|+-|+.-++--
T Consensus 531 ~D~~~Lr~i~~~~~~~ 546 (1074)
T KOG0250|consen 531 KDARILRAIMRRLKIP 546 (1074)
T ss_pred hhHHHHHHHHHHcCCC
Confidence 7777777666655544
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.39 E-value=0.69 Score=53.81 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred hhhHHHHHhHHHHHHHHHH-------HHHHHHHHHHhcCC--CchhHHHHHHHHHhccHHHHHHHHHHH---HHHH-HHH
Q 008671 411 TDSKIADLGIEIQKQIDEK-------NRIEMRLEEASREP--GRKEIIAEFRALVSSFPEDMSAMQRQL---SKYK-EAA 477 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~er-------e~L~~e~eqa~~~~--~~k~i~~Emr~LisSlq~~~~~Lk~ev---~R~k-ea~ 477 (557)
++.+..+||.++.++|.|. ..|+.++.+ ++.. +...-...+-.-++++|+.+..|+.-| .|.| |-=
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~-lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQE-LRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456666666666666543 333333322 1111 101223334444567788888887776 2221 222
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 478 ~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
+.+...|. +++-+......+..||.+||+.|..
T Consensus 622 saLg~akr--------------q~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 622 SALGDAKR--------------QLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333 3344445555566666666666543
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.33 E-value=2.6 Score=47.51 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHHH
Q 008671 479 DIHILRADVLSLTNVLERKVKECETL 504 (557)
Q Consensus 479 e~~~lr~e~~sl~~~l~~k~~e~~~l 504 (557)
+|.+|..+++.+..-+..+-.|+..|
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL 397 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKL 397 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444
No 46
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.33 E-value=2.6 Score=47.66 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 008671 356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR-ETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (557)
Q Consensus 356 Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq-~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~ 434 (557)
=..+++|++.++.-+.......+..|.++..+... ..|...++....+.......+.++|-++|. +.+.|+-
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~-------e~e~L~~ 263 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER-------EVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34556666666666666666666667777666654 224544444444444444433444444443 3444444
Q ss_pred HHHHHhcCCC--chhHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHH
Q 008671 435 RLEEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSLTNVLERKVKECETLLASSADQ 511 (557)
Q Consensus 435 e~eqa~~~~~--~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ke-a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~ 511 (557)
.+.-++.... +.|-++-....+.+..+.|.+|-.++.+.+. .+.++.+..+++..+-..+..|..+++.+..++..+
T Consensus 264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444333333 3487888888888899999999999999955 567788899999999999999999999888887776
Q ss_pred HHHHHHHHHHHHHH
Q 008671 512 VAEIHKLQAMVQDL 525 (557)
Q Consensus 512 ~~~i~~l~~~~~~l 525 (557)
..-.++|.++.-|
T Consensus 344 -sDYeeIK~ELsiL 356 (629)
T KOG0963|consen 344 -SDYEEIKKELSIL 356 (629)
T ss_pred -ccHHHHHHHHHHH
Confidence 3334444443333
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.26 E-value=4.2 Score=49.28 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh--ccCCcccccCCCCCCCCC
Q 008671 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV--TKGAFFPVLNLGNKHVAG 292 (557)
Q Consensus 215 ~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~--~~g~~~~~~~~~~~~~~~ 292 (557)
....+|-..+.+..++....++...++..+.+++.+|++++.....++-.++.+...+.. ..+-..+......|...
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~- 566 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLR- 566 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHh-
Confidence 444455666777777777777777777777777777777777666665444333211111 01111000000001110
Q ss_pred CccchhhhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHH
Q 008671 293 DRVRDEQRDLRDMESVHKELMDQASHQLLELKG----LHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKS 368 (557)
Q Consensus 293 ~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~----l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lka 368 (557)
-...+-. -.++.++++...+.. ++..|+. +-.++..+....+..+...... +.....++.+++.+++
T Consensus 567 ~~~~e~~---~~iq~~~e~~~~~~d-~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~-----~e~~~~l~~~i~sL~~ 637 (1317)
T KOG0612|consen 567 KHSKELS---KQIQQELEENRDLED-KLSLLEESKSKLSKENKKLRSELEKERRQRTEI-----SEIIAELKEEISSLEE 637 (1317)
T ss_pred hhhhhhh---HHHHHHhhccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHH
Confidence 0000111 122233332222222 2222222 2222223333333332222222 4567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 369 EVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 369 eld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
++........|++-+|-...-.. ..+ | ..+..+. .+..+.-+++.+.+..+|...+
T Consensus 638 ~~~~~~~~l~k~~el~r~~~e~~-~~~---e--k~~~e~~--~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 638 TLKAGKKELLKVEELKRENQERI-SDS---E--KEALEIK--LERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH-HHH---H--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777777554444331 222 2 1223333 4788899999999999999888
No 48
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=2 Score=47.86 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSS-SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE------ 391 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~-S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~------ 391 (557)
.++++.++.+...|+++++.-.-+.-.. .|=.+ =.+--.|+.||..|.+++|-+|.+++.++..-..++.+-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3567788888888888887765542211 11000 013356899999999999999999988887776665321
Q ss_pred ---HHhhhhhchH---HHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH---HhcCCC--chhHHHHHHHH-----
Q 008671 392 ---TELNMKIDLV---DVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPG--RKEIIAEFRAL----- 455 (557)
Q Consensus 392 ---~E~~~k~E~~---e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq---a~~~~~--~k~i~~Emr~L----- 455 (557)
+|..+=.|+. +-..+.++.++.++-+++..|+.++.|.|-|...... ..++.+ |+...+|+|.+
T Consensus 87 g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~ 166 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREA 166 (772)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111221 3345566677888888888888888888888765544 222222 23444555443
Q ss_pred -----HhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 456 -----VSSFPEDMSAMQRQLSKYKEAALDIHILRA 485 (557)
Q Consensus 456 -----isSlq~~~~~Lk~ev~R~kea~~e~~~lr~ 485 (557)
-|-|..+|=.|+-+|.-+|-.+.|...++-
T Consensus 167 RllseYSELEEENIsLQKqVs~LR~sQVEyEglkh 201 (772)
T KOG0999|consen 167 RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKH 201 (772)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHH
Confidence 235677777777777766655544444443
No 49
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.19 E-value=0.69 Score=47.95 Aligned_cols=204 Identities=19% Similarity=0.219 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 008671 325 GLHDGRIKVLQQLYNLQNTLK-SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDV 403 (557)
Q Consensus 325 ~l~~e~~~l~~e~~~Lk~~l~-d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~ 403 (557)
+..+++..+...+..|+..++ +.+.+. ...| .-..|+.+|++++..+... |..+|..--|-+.|+ |+
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE~lt-kTi~-qy~~QLn~L~aENt~L~Sk---Le~EKq~kerLEtEi----ES--- 95 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEETLT-KTIF-QYNGQLNVLKAENTMLNSK---LEKEKQNKERLETEI----ES--- 95 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHH-HHhhhHHHHHHHHHHHhHH---HHHhHHHHHHHHHHH----HH---
Confidence 456677777888888888877 444444 2233 2356888888888887777 566664444443333 33
Q ss_pred HHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 404 FRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHIL 483 (557)
Q Consensus 404 ~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~l 483 (557)
++++++..=.+.-+.-..+-+|..-|..+.-+- -..-.-|..=||.|.+.|..|-.++ -.|.+.+++|
T Consensus 96 -------~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw--~~lqdkmn~d~S~lkd~ne~LsQqL---skaesK~nsL 163 (305)
T PF14915_consen 96 -------YRSRLAAAIQDHDQSQTSKRDLELAFQRARDEW--VRLQDKMNSDVSNLKDNNEILSQQL---SKAESKFNSL 163 (305)
T ss_pred -------HHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHH--HHHHHHhcchHHhHHHHhHHHHHHH---HHHHHHHHHH
Confidence 122333333333333333333444443322211 2455667777899999999998888 6788999999
Q ss_pred HHHHHhHHHHHHHhhhhhHHH---------------------HhhhhHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHcc
Q 008671 484 RADVLSLTNVLERKVKECETL---------------------LASSADQVAEIHKLQAMVQDLTDSNLELK-LILDMYRR 541 (557)
Q Consensus 484 r~e~~sl~~~l~~k~~e~~~l---------------------~~~~~~~~~~i~~l~~~~~~l~~~~~eL~-l~ldmy~~ 541 (557)
.-++|-.+..|-.|+.-+..+ .++....++.=.++...+..|+-++-=|. -+-|.+++
T Consensus 164 e~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 164 EIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888644433 23344456666777777778877777774 34455555
Q ss_pred CCCCccchhhh
Q 008671 542 ESTDSRFVNLL 552 (557)
Q Consensus 542 e~~d~rd~~e~ 552 (557)
...-.+-|..|
T Consensus 244 ~~~kek~Vini 254 (305)
T PF14915_consen 244 ADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHhhH
Confidence 54433334333
No 50
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.09 E-value=3.8 Score=47.15 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=124.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHH
Q 008671 233 RQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKEL 312 (557)
Q Consensus 233 ~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~ 312 (557)
++++....-.++..|..+.+.....+...++.|..|+.+..... . |.+ +.+++ . .-..|+++++.+
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~--~~~-------pa~ps--e--~E~~Lq~E~~~L 92 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-P--PEP-------PAGPS--E--VEQQLQAEAEHL 92 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C--ccc-------cccch--H--HHHHHHHHHHHH
Confidence 45555666666677777777777777777777777765422221 1 111 01111 0 012334433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS-VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d-~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~ 391 (557)
+ .|++.|...+...++.++.|-.-... ...+ .-|...+..+.........+++.++.+|.+..|-.
T Consensus 93 ~-------kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL------~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAl 159 (617)
T PF15070_consen 93 R-------KELESLEEQLQAQVENNEQLSRLNQEQEERL------AELEEELERLQEQQEDRQKLLEQLQSDKATASRAL 159 (617)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 2 24444444444444444433111000 0111 11223333445555555566777788887776653
Q ss_pred HHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH----HHh---cCCCc-hhHHHHHHHHHh------
Q 008671 392 TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE----EAS---REPGR-KEIIAEFRALVS------ 457 (557)
Q Consensus 392 ~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~e----qa~---~~~~~-k~i~~Emr~Lis------ 457 (557)
..+ +.. ..++..|++.|-++-+++-+|-..+. ... ..-|+ ..-+.+|+.-+.
T Consensus 160 -sQN---------~eL----K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 160 -SQN---------REL----KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred -HhH---------HHH----HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 332 111 35777777777777777644332222 111 11111 122333333333
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh----hHHHHHHHHHHHHHHHHhhhHHHH
Q 008671 458 -SFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASS----ADQVAEIHKLQAMVQDLTDSNLEL 532 (557)
Q Consensus 458 -Slq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~----~~~~~~i~~l~~~~~~l~~~~~eL 532 (557)
+|+....++-+.++.|..+-.-+++-+..++.--.....-.+.+..-..++ --...++...+..++.+.+.+.+|
T Consensus 226 ~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL 305 (617)
T PF15070_consen 226 QSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQL 305 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444444555666655544444444444321110000001111111111 123467777888899999999999
Q ss_pred HHHHH
Q 008671 533 KLILD 537 (557)
Q Consensus 533 ~l~ld 537 (557)
+-.|.
T Consensus 306 ~~qls 310 (617)
T PF15070_consen 306 QAQLS 310 (617)
T ss_pred HHHHH
Confidence 98875
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.07 E-value=1.9 Score=45.56 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDL 525 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l 525 (557)
++...++..-++|..++..|+.-+... -.-+.++..+|.++.+....++.+..++..+......-...|..+.+....+
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443322 1233445556666666666666666666666666666666666666666666
Q ss_pred hhhHHHHHHHHHHHc
Q 008671 526 TDSNLELKLILDMYR 540 (557)
Q Consensus 526 ~~~~~eL~l~ldmy~ 540 (557)
+..-.+++-+++-.+
T Consensus 257 ~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 257 LAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666665443
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=5.1 Score=48.43 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
.+.++.++......+..-..++..+.+....+-..+..|.+.+.-. +..++.+-.+...++.++.++-..
T Consensus 780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~-----~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKL-----TASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778887777777777777777777777777777777765533 334444444444444444444443
No 53
>PRK11637 AmiB activator; Provisional
Probab=96.00 E-value=3.2 Score=45.50 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 213 RLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 213 q~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
+..+..++.+...+..++...+......+.++..+..+|..+...+...+..+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333333344444444444444444444444444
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.93 E-value=1.5 Score=49.34 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhh-------hhHHHHhh-------hhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 471 SKYKEAALDIHILRADVLSLTNVLERKVK-------ECETLLAS-------SADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 471 ~R~kea~~e~~~lr~e~~sl~~~l~~k~~-------e~~~l~~~-------~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
.+|.+....+..++..+...+..++.... ++..|..+ +..-..++++++..+..+.........|-
T Consensus 330 ~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~ 409 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVT 409 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444444444433332 23333322 33333444444444555544555555666
Q ss_pred HHHccCCCC
Q 008671 537 DMYRRESTD 545 (557)
Q Consensus 537 dmy~~e~~d 545 (557)
++|+..+..
T Consensus 410 ~~~~~~g~~ 418 (562)
T PHA02562 410 DLLKDSGIK 418 (562)
T ss_pred HHHHhhhHH
Confidence 666664443
No 55
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=5.7 Score=47.22 Aligned_cols=167 Identities=14% Similarity=0.224 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch----------HHHHHhhhhhhhhHHHHHhHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL----------VDVFRRSSAVTDSKIADLGIEI 422 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~----------~e~~~~~~~~~~~~v~~lE~~L 422 (557)
+.+-..++.|+..+...+.-....++.+-+.++.+..+- +. .++|. .+..+-.++ ..+|.+|-..|
T Consensus 726 ~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~-~~-~e~el~sel~sqLt~ee~e~l~kL--n~eI~~l~~kl 801 (1200)
T KOG0964|consen 726 KRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQS-NY-FESELGSELFSQLTPEELERLSKL--NKEINKLSVKL 801 (1200)
T ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-Hh-HHHHHhHHHHhhcCHHHHHHHHHh--hHHHHHHHHHH
Confidence 344445555555555555555555555555555555441 22 12221 133333444 57888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE--AALDIHILRADVLSLTNVLERKVKE 500 (557)
Q Consensus 423 aqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ke--a~~e~~~lr~e~~sl~~~l~~k~~e 500 (557)
.+++.++-++...... .. -.|.+-|-.+...|+++|....+ -.+++.....++.+...-++....+
T Consensus 802 ~~~~~er~~~~~rk~~-le-----------~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~e 869 (1200)
T KOG0964|consen 802 RALREERIDIETRKTA-LE-----------ANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILE 869 (1200)
T ss_pred HHHHHHHHHHHHHHHH-HH-----------HHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888887664322211 00 12344566666666666665533 2466666666666666666666677
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008671 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (557)
Q Consensus 501 ~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ 535 (557)
++.|.+..-.-.++|+.++-..+.++.-+++.+-.
T Consensus 870 l~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~ 904 (1200)
T KOG0964|consen 870 LKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN 904 (1200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777766666677777776666666665555544
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.72 E-value=9 Score=48.51 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (557)
Q Consensus 214 ~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrK 264 (557)
..+.....+-+....++...+.++......+.++..++..+..+++++++.
T Consensus 286 EEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555555555553
No 57
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.70 E-value=3.3 Score=43.41 Aligned_cols=102 Identities=19% Similarity=0.323 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 008671 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 358 ~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~e 437 (557)
.|+.++..|.++...++..++.|..++..+=... |. |- +.=|..|-....++-.++-.|..+++
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~L-E~----EQ-----------E~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTL-EQ----EQ-----------EALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH-HH----HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666777777777777777777777776654442 33 32 34466677777788889999999999
Q ss_pred HHhcCCCc-hhHH--HHHHHHHhccHHHHHHHHHHHHHHHH
Q 008671 438 EASREPGR-KEII--AEFRALVSSFPEDMSAMQRQLSKYKE 475 (557)
Q Consensus 438 qa~~~~~~-k~i~--~Emr~LisSlq~~~~~Lk~ev~R~ke 475 (557)
+..-++.. .+++ ......+..+..|+..|..||.|+|.
T Consensus 203 ~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 203 QPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred cccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 95444332 3333 22333445677888888888877744
No 58
>PRK01156 chromosome segregation protein; Provisional
Probab=95.65 E-value=7 Score=46.78 Aligned_cols=18 Identities=6% Similarity=0.449 Sum_probs=7.7
Q ss_pred HHHHHHhccHHHHHHHHH
Q 008671 451 EFRALVSSFPEDMSAMQR 468 (557)
Q Consensus 451 Emr~LisSlq~~~~~Lk~ 468 (557)
++..-+..+..++..++.
T Consensus 647 ~~~~~i~~l~~~i~~l~~ 664 (895)
T PRK01156 647 KLRGKIDNYKKQIAEIDS 664 (895)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444443
No 59
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.46 E-value=0.016 Score=67.45 Aligned_cols=221 Identities=20% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccc------Ch------------hHHHHHHHHHHHHH
Q 008671 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSS------SK------------AFLSVKNQLEKSKS 368 (557)
Q Consensus 308 ~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~------S~------------~Yk~L~~Q~~~lka 368 (557)
-++|-+.-..+|+.-++.++.+...+.-++..|..++..- .++.. || .+..|.+++..+.+
T Consensus 285 lLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~ 364 (722)
T PF05557_consen 285 LLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQS 364 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3445555556777777888888887777777777776632 22221 11 33334444455777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-----HhcCC
Q 008671 369 EVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE-----ASREP 443 (557)
Q Consensus 369 eld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq-----a~~~~ 443 (557)
++......+..|+.++..+..+. +.. +. ........+..||....=+.+|+|-||.-+.. +...+
T Consensus 365 ~~~~l~~~~~~Le~e~~~l~~~~-~~l---~~------~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~ 434 (722)
T PF05557_consen 365 ELRELEEEIQELEQEKEQLLKEI-EEL---EA------SLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNP 434 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH---HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Confidence 77777777777888887766553 221 11 11112456778999999999999999987776 11111
Q ss_pred C-c-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHH
Q 008671 444 G-R-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALD----IHILRADVLSLTNVLERKVKECETLLASSADQVAEIHK 517 (557)
Q Consensus 444 ~-~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e----~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~ 517 (557)
+ . ..-+.++-.|+.-++++...|+.+|..+...... ...+..++.+++........-+..++.++..--.+|..
T Consensus 435 ~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~ 514 (722)
T PF05557_consen 435 SEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEE 514 (722)
T ss_dssp -----------------------------------------------------------HHCCCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 1 1 1233345555555555555555544333221111 11223333333333222222233455566666678888
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 008671 518 LQAMVQDLTDSNLELKLILDM 538 (557)
Q Consensus 518 l~~~~~~l~~~~~eL~l~ldm 538 (557)
|...+..|+.....|+.=|.-
T Consensus 515 Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 515 LERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765
No 60
>PRK09039 hypothetical protein; Validated
Probab=95.37 E-value=2.4 Score=45.36 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccccc
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVL 283 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~ 283 (557)
.|..++..+...++.|+.+.-.++.-+.- .......|+..|.++...|..++..-++|....... +
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~l-------e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~--~----- 108 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSL-------ERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL--A----- 108 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h-----
Confidence 46677777777777777776665555555 667777777777777777776666656555332211 0
Q ss_pred CCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHH
Q 008671 284 NLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQL 363 (557)
Q Consensus 284 ~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~ 363 (557)
....+ .... ...+..+|.+.+...+.-.-++..|+.+...|..++..|+..|... -...+..+.++
T Consensus 109 -------~~~~~-~~~~-~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a-----e~~~~~~~~~i 174 (343)
T PRK09039 109 -------GAGAA-AEGR-AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS-----EKRDRESQAKI 174 (343)
T ss_pred -------hhcch-HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 00111 1122 5677888888888888888888888888888888888887776643 11225556666
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008671 364 EKSKSEVFKYQAL-FEKLQVEKDNLA 388 (557)
Q Consensus 364 ~~lkaeld~~R~l-~ekLQ~er~~~~ 388 (557)
..+...+..+-+. +..|..=|..|.
T Consensus 175 ~~L~~~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 175 ADLGRRLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6666655555433 444555555554
No 61
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.28 E-value=0.062 Score=62.64 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHH
Q 008671 323 LKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVD 402 (557)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e 402 (557)
+..|+.++..+..++..|+..+...+-.. ..+...+..++.+++++++++|..++++-..++.+.-+. +. +..|..+
T Consensus 202 i~~L~~e~~~L~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~-e~-le~ei~~ 278 (713)
T PF05622_consen 202 ISDLQEEKESLQSENEELQERLSQLEGSS-EEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIEL-EE-LEKEIDE 278 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHhhhhhhhhhcccCCCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHH
Confidence 44577777777778877776655433111 223444555566666666666666655555555554331 22 1112222
Q ss_pred HHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-------------HhcCCCc-hhHHHHHHHHHhccHHHHHHHHH
Q 008671 403 VFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE-------------ASREPGR-KEIIAEFRALVSSFPEDMSAMQR 468 (557)
Q Consensus 403 ~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq-------------a~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ 468 (557)
+.++. .++...-......|.+.|.|+-+-+. -+.+.+- +.-+.+++.-...+...+.+|+.
T Consensus 279 L~q~~-----~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 279 LRQEN-----EELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 12233334445555555555554433 1222221 22333444445566667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-------hhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 469 QLSKYKEAALDIHILRADVLSLTNVLERKV-------KECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 469 ev~R~kea~~e~~~lr~e~~sl~~~l~~k~-------~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
++.++......+..++.++..+..-+.... .++..|..++..-..+-..|......|++...+|.
T Consensus 354 el~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 354 ELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998888888888888777765554333 34556666665554555555555555555555554
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.27 E-value=4.5 Score=42.18 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=70.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHH
Q 008671 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLT 491 (557)
Q Consensus 416 ~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~ 491 (557)
.++-..+.+++..++...--+++...-.+=..-+.+++.-.+.+++++..|-.+.+-| -.+-.++..+|.++..++
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777776665555544333334566777777888999999999888877 456777777777777766
Q ss_pred HHHHHhhh-------hhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 492 NVLERKVK-------ECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 492 ~~l~~k~~-------e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
.-+..... ++..+...+.+-...|+.|++....
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443333 4445555566666666666655443
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.25 E-value=3.5 Score=40.78 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+..|..++.+.+.....-...+.++..+|..+..-+..++-+ ...|+..+..|...-..|+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e-------------------~~eL~k~L~~y~kdK~~L~ 89 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE-------------------VEELRKQLKNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766667777666666666555554443 2333333333333333333
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 382 ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
..+..+.....++ -.++-+-..|+..+.+|-.||++|...|+.+..+.-
T Consensus 90 ~~k~rl~~~ek~l--------------~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 90 NLKARLKELEKEL--------------KDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221111 111356677888888999999999999998766655
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.12 E-value=7 Score=45.71 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
..++.|+..||...+.|+.|.+.+....+. +..-+..|+-.|-+-+---..+++.|...+
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~-------DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQ-------DKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888877777766 555555555555555555555555554443
No 65
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.05 E-value=3.9 Score=40.25 Aligned_cols=169 Identities=19% Similarity=0.227 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------cccccChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 008671 314 DQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--------KCLSSSKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEK 384 (557)
Q Consensus 314 ~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--------~~I~~S~~Yk~L~~Q~~~-lkaeld~~R~l~ekLQ~er 384 (557)
.+-+.|+..+.+|+.++..+..+++.+..+-+-. ..|. -|-.=.+.+.. +..+.++.|.+=+.|....
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~---k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ---KYEDTEAELPQLLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666665553311 1111 22222222222 4444555555544444444
Q ss_pred HHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHH--------HHHHHHHHHHH---HhcCCCchhHHHHHH
Q 008671 385 DNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQID--------EKNRIEMRLEE---ASREPGRKEIIAEFR 453 (557)
Q Consensus 385 ~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~--------ere~L~~e~eq---a~~~~~~k~i~~Emr 453 (557)
+..+.-.+.+ . ..+.++..+.+.+..+.. +++.|.-+++. .+++.+ +.|..=-+
T Consensus 82 ~~~r~~~~kl-------------k-~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~-~ki~~Lek 146 (194)
T PF15619_consen 82 EQERELERKL-------------K-DKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKE-KKIQELEK 146 (194)
T ss_pred HHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4443221111 1 113455555555554443 67888777777 344444 22222122
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 454 ALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE 500 (557)
Q Consensus 454 ~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e 500 (557)
.+--+-.+...++..+..+.++|+.++..+..++..|...|..|..+
T Consensus 147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334556677888888888999999999999999998888877654
No 66
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.03 E-value=0.0063 Score=72.12 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
...+..|+....++-.+.+++..+++.+
T Consensus 341 ~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 341 NAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777777777766663
No 67
>PRK09039 hypothetical protein; Validated
Probab=95.02 E-value=2.3 Score=45.41 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=80.0
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl 490 (557)
++.++.++..++.-....++.|..-+.... ....++..-+..+. ..|..+-..|-++..++..|+.++..|
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~------~~~~~~~~~~~~l~---~~L~~~k~~~se~~~~V~~L~~qI~aL 149 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELA------GAGAAAEGRAGELA---QELDSEKQVSARALAQVELLNQQIAAL 149 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhcchHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355566666666555555555554443211 11112222222222 555555577789999999999999999
Q ss_pred HHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhh-HHHHHHH
Q 008671 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDS-NLELKLI 535 (557)
Q Consensus 491 ~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~-~~eL~l~ 535 (557)
+..|..=..++.....+.+++-..|.+|+..+..+... .++|.-+
T Consensus 150 r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 150 RRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987744 8888765
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.97 E-value=4.6 Score=40.71 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+..|+..+.+++..+..--.-+++....+..+...+....-.+... -.-...|..++..+...+..+..-.++..
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~-----E~ki~eLE~el~~~~~~lk~lE~~~~~~~ 168 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA-----ESKIKELEEELKSVGNNLKSLEASEEKAS 168 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 6777888888887777766666666555555555555544433322 11122222222222222222111111111
Q ss_pred HHHHHH-------HHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008671 382 VEKDNL-------AWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (557)
Q Consensus 382 ~er~~~-------~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~ 443 (557)
.--+.| ..+..+.-.- .+.+-+....++.+|..|++.|...+..|..+.-++.+++.+-
T Consensus 169 ~re~~~e~~i~~L~~~lkeaE~R---ae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 169 EREDEYEEKIRDLEEKLKEAENR---AEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 1111222111 1222333334478899999999999999999888888866543
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=3.5 Score=42.44 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=55.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL-AALR 269 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL-~~l~ 269 (557)
..+..+..+++..++.|..+.-.+..+++..+......+++++.|+++++++..++..-...| .|+|
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888899999999999999999999888888899999999999999888887766665 4555
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.94 E-value=4.7 Score=40.65 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ek 379 (557)
+..|+.+++++..-+..=..+|+........+-.++..|+..+..+ +.=....-+......+..+....++.-.-...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777776666666667776666667777777776665533 12122223444555555555444444333211
Q ss_pred HHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 380 LQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 380 LQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
| |. +.... +.++.+||..|..+....+....+++.
T Consensus 83 l------------------E~----r~~~~--eeri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 83 L------------------EN----REQSD--EERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp H------------------HH----HHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------------Hh----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 21 22222 456666666666666666666555554
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.91 E-value=0.048 Score=63.55 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=18.9
Q ss_pred CCcchhhchHHHhhhh-HHHHHHHHHHHhH
Q 008671 32 SSEEKKIDTAVLQFQN-QKLVQKLETQKVE 60 (557)
Q Consensus 32 ~s~~~e~D~~vLqfQn-~kL~qqLe~~k~e 60 (557)
++.+..-+| ++.++| ++|++.|..|-++
T Consensus 57 i~~~~~~nw-~lr~~NLk~l~~~i~~yy~e 85 (713)
T PF05622_consen 57 IKEDVGDNW-RLRVSNLKKLLRNIKSYYQE 85 (713)
T ss_dssp --SGGGG-S-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555678 779998 7889998888544
No 72
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.82 E-value=9 Score=43.27 Aligned_cols=256 Identities=20% Similarity=0.216 Sum_probs=120.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hhhhhccCCc
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR-AERDVTKGAF 279 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~-~E~~~~~g~~ 279 (557)
....|..|+..|...+...++.|.....+... ...........++..|+.+.-++...+..+...+ ++..-
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~---~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL----- 244 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIE---IAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKL----- 244 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 45678888888888888888888776544333 2222334555566666655555555555442222 11000
Q ss_pred ccccCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHH
Q 008671 280 FPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSV 359 (557)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L 359 (557)
. .....+..|..+++.... +.+.+-.........+.. ....+
T Consensus 245 -----------~-----~a~~~l~~Lq~El~~~~~---~~l~~~~~~~~~~~~~~~-------------------~l~s~ 286 (522)
T PF05701_consen 245 -----------A-----EASAELESLQAELEAAKE---SKLEEEAEAKEKSSELQS-------------------SLASA 286 (522)
T ss_pred -----------H-----HHHHHHHHHHHHHHHHHH---HHHhhhHHhhhhhhhHHH-------------------HHHHH
Confidence 0 001124555555555444 222221111111111111 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 360 ~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
+..+..++..|.........|+..=.+++..+ +. .|.|...+..+. ..+...|..|+.+|.+++.+-+.....-..
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL-e~-~K~el~~lke~e-~~a~~~v~~L~~eL~~~r~eLea~~~~e~~- 362 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSEL-EK-EKEELERLKERE-KEASSEVSSLEAELNKTRSELEAAKAEEEK- 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHH-HHHHhHHhhHHHHHHHHHHHHHHHHhhhcc-
Confidence 33333333333333333333332222222221 11 122222222222 223578889999998888887776544332
Q ss_pred hcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 008671 440 SREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEI 515 (557)
Q Consensus 440 ~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i 515 (557)
.+..++.+...+.++..+.... ..+..++.+++.+++..+. .+.....|+-.-..++
T Consensus 363 ------------~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka-------~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 363 ------------AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA-------AIKTAEERLEAALKEA 423 (522)
T ss_pred ------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 2233444555556666666333 3344555555555544444 4445555666666666
Q ss_pred HHHHHHHHHH
Q 008671 516 HKLQAMVQDL 525 (557)
Q Consensus 516 ~~l~~~~~~l 525 (557)
...|+-....
T Consensus 424 eaaKasEa~A 433 (522)
T PF05701_consen 424 EAAKASEALA 433 (522)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 73
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.75 E-value=2.3 Score=43.18 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 322 ELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (557)
Q Consensus 322 ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekL 380 (557)
+|+.+...|.++...++.|+++..-.+-- --..|..+..|.+.|+.++-+.++.+|.|
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek-~e~q~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEK-QEDQRVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555543311000 01256666677777777777766665444
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.46 E-value=9.2 Score=41.84 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=52.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~ 478 (557)
.++...=...|++.+.|+..+..+++.....-. ....|++.-.++|.+.|..++.+..+-++++.
T Consensus 191 ~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q--~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ--KKLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677889999999999999888666555 67889999999999999999999887755544
No 75
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.37 E-value=17 Score=44.45 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.++.....+....+.++..|+.++-++.-+++.+.++.+.+.
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555554444443
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.28 E-value=2.7 Score=42.72 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHH-------HHH
Q 008671 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKS-------KSE 369 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~l-------kae 369 (557)
.+..+.++++.+..-......+++++..+...+..+++.+.-++.+. +.|....+|..|...++.+ +.+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888888888888888888777776644 7788888888888888774 445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008671 370 VFKYQALFEKLQVEKDNLA 388 (557)
Q Consensus 370 ld~~R~l~ekLQ~er~~~~ 388 (557)
+.++....++|+.+.....
T Consensus 112 l~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.12 E-value=13 Score=42.07 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=60.7
Q ss_pred cchHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhc-ccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHH
Q 008671 149 PNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-LQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLT 227 (557)
Q Consensus 149 ~~~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~-~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls 227 (557)
.+.++..|..|.......+ ...|+++...+..|...+.+- ..++... -|...-..|+..+.++++--..|.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i---~~~ie~l~~~n~~l~e~i~e~ek~~~~~e-----slre~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSI---ANEIEDLKKTNRELEEMINEREKDPGKEE-----SLREKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCcchHH-----HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666777776665544433 345555556666666666542 1111111 234444556666666666666665
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.+.+. ....++.|+.+++....+++......+.|+
T Consensus 287 ~k~~~-------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 287 SKKQH-------MEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred hhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 555666666666666666666666666665
No 78
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.12 E-value=22 Score=44.85 Aligned_cols=132 Identities=19% Similarity=0.150 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHHHHH
Q 008671 236 IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQ 315 (557)
Q Consensus 236 ~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~l 315 (557)
+++.++.++.+|..+++.+..++..+..+..+|..+.... |+. . ++...-..+..+..-
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~-----Ps~----------~------dL~~A~~~l~~A~~~ 801 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGA-----PSD----------R------SLRAAHRRAAEAERQ 801 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCc----------h------HHHHHHHHHHHHHHH
Confidence 3344666777777777777777777777777776664442 111 0 122223344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLK----SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (557)
Q Consensus 316 A~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~----d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~ 388 (557)
......++..+.+......+.+...+..+. ....-.....|..+..-+......+..++..+..|+.....+.
T Consensus 802 ~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~ 878 (1353)
T TIGR02680 802 AESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAA 878 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666554 2244555566766666666666666666655555555544443
No 79
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.10 E-value=4.3 Score=40.10 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-----KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
+.+|...-+.+..+...-..|-..|.+-+..+..++..|+-++.+- .....-.-++.+..++..++-+.+-+...
T Consensus 36 i~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 36 IAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666667777777777777777666643 11111234566677777788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 377 ~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
+++++.||+.+.++--... .++++... -+-.-||..|.-+...-|.-.+.+.+.+.+.+
T Consensus 116 ~~kle~ErdeL~~kf~~~i-----~evqQk~~----~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 116 FEKLEQERDELYRKFESAI-----QEVQQKTG----LKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999987641221 34444443 57788999999999988988999988555544
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.96 E-value=14 Score=42.09 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
.+..|+..+.++..+... .+|+.....+..+..++..|-..+... .+|. .....+.+.+.+++.++..+..+
T Consensus 257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ve--k~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVE--KNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHH
Confidence 366666666665543332 367777777777777777777766644 1111 13333445555555555555555
Q ss_pred HHHHHH
Q 008671 377 FEKLQV 382 (557)
Q Consensus 377 ~ekLQ~ 382 (557)
++.|+.
T Consensus 333 i~~l~~ 338 (569)
T PRK04778 333 IDRVKQ 338 (569)
T ss_pred HHHHHH
Confidence 444433
No 81
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.94 E-value=16 Score=42.91 Aligned_cols=186 Identities=15% Similarity=0.174 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHHHH--
Q 008671 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMD-- 314 (557)
Q Consensus 237 ~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~-- 314 (557)
......-..-|.+++.++..++..++.++...+.+..-. .+ . ++.. ..+. +.+++..+..++.
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~----~~-----~----~~~~-~~~~-L~~l~~ql~~a~~~~ 253 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL----MG-----N----NATL-ATQQ-LAELNTELSRARANR 253 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cc-----C----Cccc-hHHH-HHHHHHHHHHHHHHH
Confidence 344666778899999999999999999998888552111 00 0 1111 1122 5555555444333
Q ss_pred -HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHH
Q 008671 315 -QASHQLLELKGLH--------------------DGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVF 371 (557)
Q Consensus 315 -lA~~Rl~ELe~l~--------------------~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld 371 (557)
-+..|+..++... ...+.+..++..++.++.+. .|=...+..+.++.|+..+++++.
T Consensus 254 ~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 254 AAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 2222333333221 12233333334444333322 344556777778888887776654
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHh--hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 372 K-YQALFEKLQVEKDNLAWRETELNMKIDLVDVFRR--SSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 372 ~-~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~--~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
+ .+.....+.++-.....++ ..+.....++..+ ..-..+.++.+|+-+..-.+.-|+.|...++++
T Consensus 334 ~e~~~~~~~~~~~~~~a~~~~--~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 334 SELQKITKSLLMQADAAQARE--SQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222222333333333221 1111111111111 111225677788888888888888888888883
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.89 E-value=13 Score=43.89 Aligned_cols=254 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHH
Q 008671 239 KDKAKLNRLKGELESA--------------VKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRD 304 (557)
Q Consensus 239 ~~e~e~~eL~~~LE~~--------------~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~e 304 (557)
++++++.-|+.+||.+ -.-|..+.+.|-.++.|+..-..-.+. .++++|+-
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~---------------~~s~e~e~ 85 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVA---------------KKSKEWEK 85 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH---------------HHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEK 384 (557)
Q Consensus 305 L~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er 384 (557)
...+++.-..-+.+++..+..-..-....+.+-+++=.+|....... -..|..|+..++.+..++--++-+ ++.--
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~-e~~~~~l~~~l~~~eken~~Lkye---~~~~~ 161 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQA-EAEIEDLMARLESTEKENSSLKYE---LHVLS 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred HHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHhccHHHH
Q 008671 385 DNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKE-IIAEFRALVSSFPEDM 463 (557)
Q Consensus 385 ~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~-i~~Emr~LisSlq~~~ 463 (557)
-.+-.+-.|..+..-++|++....++.=..|+.||...+|+|. .+...-+ || ..+.||.=|.++....
T Consensus 162 keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~----------l~rk~lp-gpaa~a~mk~ev~~~~~~~ 230 (769)
T PF05911_consen 162 KELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRA----------LVRKKLP-GPAALAQMKNEVESLGRDS 230 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhccCC-ChHHHHHhHHHHHHhcccc
Q ss_pred HHHHHHHHHHH--------------------HHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 008671 464 SAMQRQLSKYK--------------------EAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMV 522 (557)
Q Consensus 464 ~~Lk~ev~R~k--------------------ea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~ 522 (557)
+.+..--...+ =....+..+..+-.-|+.+|.+|+.|+..-...||..+..+..+.+++
T Consensus 231 ~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 231 GENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 83
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.50 E-value=0.021 Score=66.55 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEK---SKSEVFKYQALFEKLQVEKDNLA-WRETELN 395 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~---lkaeld~~R~l~ekLQ~er~~~~-rq~~E~~ 395 (557)
+.+|+..+.........+..|+.++.+.+-. ....+.+++|+.+ |.+++.+.+..+..|.....+.- ..+ +.
T Consensus 215 ~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~--~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeE-e~- 290 (722)
T PF05557_consen 215 LQELQASQASLAEAEQKIKELEAELKDQESD--AEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEE-EK- 290 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH-
Confidence 3333333334444455566666665543100 0123566777666 67777776666555544443332 221 11
Q ss_pred hhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 396 MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 396 ~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
.+ .+.++ .++..++.+|+.+.-++..|+.++..
T Consensus 291 ---~s----Lq~kl---~~~E~~~~el~~lq~e~~~Le~el~s 323 (722)
T PF05557_consen 291 ---RS----LQRKL---ERLEELEEELAELQLENEKLEDELNS 323 (722)
T ss_dssp -------------------------------------------
T ss_pred ---HH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22222 35556667777777777777777666
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.44 E-value=21 Score=42.29 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 360 ~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
..++.-++.........+..|..+...++++-...-...| .+.+.+.+.+.....|.+.|-++-.+...+..+.|.
T Consensus 416 e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle---~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 416 ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLE---SAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333334444444444444444444444444222211112 223333344566666777776666666666555543
No 85
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=16 Score=41.03 Aligned_cols=223 Identities=15% Similarity=0.163 Sum_probs=116.9
Q ss_pred ccHHHHHHHHHHHHHH-HHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 204 NLQSEVKNLRLALMDL-HLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L-~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
.|..|+.+|-..++.. +++|...---+. +-.++..|+.+++++.++|+-+|.-++.++.--......+...
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~--------lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~ 83 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLE--------LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV 83 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555544432 333333222222 3446678888899999999988888877761100000001001
Q ss_pred cCCC-C---CCCCCCcc---chhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccC-
Q 008671 283 LNLG-N---KHVAGDRV---RDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS- 353 (557)
Q Consensus 283 ~~~~-~---~~~~~~~~---~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S- 353 (557)
+..| . .-+..+.+ .=.++ +-+|+.+++..+....+--.|.+.+...+.++..-++.+-.+.+-. +-|+++
T Consensus 84 ~~~g~e~EesLLqESaakE~~yl~k-I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 84 ARDGEEREESLLQESAAKEEYYLQK-ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred hccchhhHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 1000 0 00000000 01122 5688899998888888877888888777777766555544442211 222211
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--HHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHH
Q 008671 354 -KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL-------AWR--ETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ 423 (557)
Q Consensus 354 -~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~-------~rq--~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~La 423 (557)
++-+.| +.|+.|+.++.-++..+-.|...-..| .|- +.|. |+.-++|+ .+.+.+++.++...=.+|+
T Consensus 163 fRE~Rll-seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el-ln~q~ee~-~~Lk~IAekQlEEALeTlq 239 (772)
T KOG0999|consen 163 FREARLL-SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL-LNSQLEEA-IRLKEIAEKQLEEALETLQ 239 (772)
T ss_pred HHHHHHH-HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 122222 334455555555555554443322222 121 1122 22222222 3334445888888888999
Q ss_pred HHHHHHHHHHHHHHH
Q 008671 424 KQIDEKNRIEMRLEE 438 (557)
Q Consensus 424 qvr~ere~L~~e~eq 438 (557)
+-|..+.-|+-++.+
T Consensus 240 ~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 240 QEREQKNALKKELSQ 254 (772)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999999998
No 86
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.28 E-value=12 Score=44.06 Aligned_cols=108 Identities=14% Similarity=0.220 Sum_probs=62.3
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHH
Q 008671 408 SAVTDSKIADLGIEIQKQIDEKNRIEMRLEE-ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHI 482 (557)
Q Consensus 408 ~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq-a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~ 482 (557)
....+.+...+-..++.++.+..+|.-++.+ ..+-.-....+.++......|.+.+..++.+..+| .+-+.-+.+
T Consensus 419 ~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~ 498 (980)
T KOG0980|consen 419 ALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALES 498 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334678888888889999998888888888 33222223445577777777777777777766554 333333444
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 008671 483 LRADVLSLTNVLERKVKECETLLASSADQVAEI 515 (557)
Q Consensus 483 lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i 515 (557)
+|.++.-+..-++.-...+.+++..++.+..++
T Consensus 499 l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 499 LRQELALLLIELEELQRTLSNLAQSHNNQLAQL 531 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555544333333333333344444444444433
No 87
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.27 E-value=7.4 Score=39.72 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQ----LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~R----l~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
+..-+..+.+..+.|.+| ...|-.-.++.+.++.++..||....-. --.+++-.--.+.--|..|+.++++...-
T Consensus 113 Lk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~K 192 (330)
T KOG2991|consen 113 LKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDK 192 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666665 3456666778888888888888776633 22333334445566778899999999999
Q ss_pred HHHHHHHHHHHH----HH-HHHhhhh-----hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008671 377 FEKLQVEKDNLA----WR-ETELNMK-----IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRK 446 (557)
Q Consensus 377 ~ekLQ~er~~~~----rq-~~E~~~k-----~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k 446 (557)
++.+|.+-.++. .+ =+-+|+| .|-.|+.++.. +-+|.+||..|+=..+-.++|+.-|
T Consensus 193 lee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s---~Gria~Le~eLAmQKs~seElkssq---------- 259 (330)
T KOG2991|consen 193 LEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS---EGRIAELEIELAMQKSQSEELKSSQ---------- 259 (330)
T ss_pred HHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh---cccHHHHHHHHHHHHhhHHHHHHhH----------
Confidence 999999877652 00 0112222 35567777776 5899999999987666666554333
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQL-----------SKYKEAALDIHILRADVLSLTNVLERKVKE 500 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev-----------~R~kea~~e~~~lr~e~~sl~~~l~~k~~e 500 (557)
+-|-++|..|-.+| +++|++..+|..|....+-++.++--++.+
T Consensus 260 ----------~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 260 ----------EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred ----------HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33444444444444 344888888888888777666666555544
No 88
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.27 E-value=18 Score=41.18 Aligned_cols=173 Identities=17% Similarity=0.288 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
.+..+...++++...-.+ -+|+.....+..+..++..|-..+..+ .+|. ..+..+...+.+++..+..+..+
T Consensus 253 ~i~~i~~~l~~~~~~L~~--l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~--~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 253 EIEQIEEQLEEALALLKN--LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE--KNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHH
Confidence 477777888777766632 378888889999999999888877744 2222 24455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHH
Q 008671 377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRAL 455 (557)
Q Consensus 377 ~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~L 455 (557)
++.+ +.+|.-.. . |. ..+.+++..+..+.+.++.+...++........ .....++..-
T Consensus 329 ~~~v---~~sY~L~~---~---e~------------~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~ 387 (560)
T PF06160_consen 329 LERV---SQSYTLNH---N---EL------------EIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ 387 (560)
T ss_pred HHHH---HHhcCCCc---h---HH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 3222 22222110 0 21 355666677777777777776666654444442 2233333333
Q ss_pred HhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 456 VSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKV 498 (557)
Q Consensus 456 isSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~ 498 (557)
+..+.+.-..+...|..+ ++|...+..++..++..+..+++.+
T Consensus 388 l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 388 LEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444555555555444 5677777777777777777666655
No 89
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.13 E-value=5.5 Score=40.99 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=61.0
Q ss_pred hhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 181 KGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE 260 (557)
Q Consensus 181 ~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek 260 (557)
.|.+..+|...-.-..........|+.||..|...++.|.-.-..++-+++. .+..+.-|+|+|..+...+++
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~-------Ke~qv~~lEgQl~s~Kkqie~ 113 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV-------KESQVNFLEGQLNSCKKQIEK 113 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh-------hHHHHHHHHHHHHHHHHHHHH
Confidence 6777777765300000001133468889999999999999999999888888 888888888888888888888
Q ss_pred HhHHHHHHH
Q 008671 261 CNCKLAALR 269 (557)
Q Consensus 261 ~rrKL~~l~ 269 (557)
..-.+-+++
T Consensus 114 Leqelkr~K 122 (307)
T PF10481_consen 114 LEQELKRCK 122 (307)
T ss_pred HHHHHHHHH
Confidence 888887777
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.44 E-value=27 Score=41.00 Aligned_cols=324 Identities=14% Similarity=0.128 Sum_probs=158.3
Q ss_pred hhhhhhhhhHHHHhhcccCCchhh--hhccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 008671 176 NLWHLKGGLYAAVLKDLQDGGSKQ--KASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELES 253 (557)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~~~~--~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~ 253 (557)
.++.-.+.++..+..+.....++. --+..+..+...++..+..+...-+.+..++..+|.++...++++.-|+..+.-
T Consensus 52 dlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~ 131 (1265)
T KOG0976|consen 52 DLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQG 131 (1265)
T ss_pred HHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544322112221 144456778888999999888888888999999999999999888888888877
Q ss_pred HHHHHHHHhHHHHHHHhhh----hhccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 254 AVKELEECNCKLAALRAER----DVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDG 329 (557)
Q Consensus 254 ~~~elek~rrKL~~l~~E~----~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e 329 (557)
++.++-.+.-.|..++.+- +..+ ++. . +..+-+++|...-.++.++-..=-.-|.+...+
T Consensus 132 ~q~d~ke~etelE~~~srlh~le~eLs-Ak~------------~---eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~e 195 (1265)
T KOG0976|consen 132 AQDDKKENEIEIENLNSRLHKLEDELS-AKA------------H---DIFMIGEDLHDKNEELNEFNMEFQTKLAEANRE 195 (1265)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHh-hhh------------H---HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 7777777766665554221 1111 000 0 111112333322222222222111222233333
Q ss_pred HHHHHHHHHHHhhhcc-ccccc-----------ccChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 330 RIKVLQQLYNLQNTLK-SVKCL-----------SSSKAFLSVKNQLEK---SKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (557)
Q Consensus 330 ~~~l~~e~~~Lk~~l~-d~~~I-----------~~S~~Yk~L~~Q~~~---lkaeld~~R~l~ekLQ~er~~~~rq~~E~ 394 (557)
+..+-..+++++.++. ++..+ .-+..-.+|-+|++. +++..-..+++..-||.--+-+.-.++++
T Consensus 196 n~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~ql 275 (1265)
T KOG0976|consen 196 KKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQL 275 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333 11000 002355667777766 56666666666666666665555433333
Q ss_pred hhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHh-ccHHHHHHHHHHHH--
Q 008671 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVS-SFPEDMSAMQRQLS-- 471 (557)
Q Consensus 395 ~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~Lis-Slq~~~~~Lk~ev~-- 471 (557)
++ .+..+ ..+..+.|-- |+--.+||...-....++-|.-..-+..=|+.. -+..++..++-.+.
T Consensus 276 ----k~----kns~L--~~ElSqkeel---Vk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 276 ----KA----KNSVL--GDELSQKEEL---VKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred ----HH----HHHHH--hhhhhHHHHH---HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22222 4555555544 333344444333333333332111222222211 12233333333331
Q ss_pred -----HHHHHHHHHHHHHH----HHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 008671 472 -----KYKEAALDIHILRA----DVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDS 528 (557)
Q Consensus 472 -----R~kea~~e~~~lr~----e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~ 528 (557)
-+-+--.|+.+-|+ ++.+++..++.-..+...|..-.|..-.+|..+|.-|-.+.+-
T Consensus 343 rrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 11222333333333 3444444444444556666666677777777777776655544
No 91
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.38 E-value=21 Score=39.62 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSR-QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~-~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
.+..++..++..++....+-..+-.+.... -+.......++..+..++..++.++..++.+++.++..-. |.+ |.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~---~~~-~~ 240 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG---GEE-PV 240 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCC-CC
Confidence 344455555555555555555543332211 1223345678888888888888888888888887774311 111 11
Q ss_pred cCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------ccccc
Q 008671 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----------KCLSS 352 (557)
Q Consensus 283 ~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----------~~I~~ 352 (557)
....+ + ...... ..+ +.+++.++.++..--...--.+ +.+..++..++..+... ..+ .
T Consensus 241 ~~~~~-~-~~~~~l-~~~-l~~l~~~l~~l~~~y~~~hP~v-------~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~-~ 308 (498)
T TIGR03007 241 LLAGS-S-VANSEL-DGR-IEALEKQLDALRLRYTDKHPDV-------IATKREIAQLEEQKEEEGSAKNGGPERGEI-A 308 (498)
T ss_pred cCccc-c-cCCCch-HHH-HHHHHHHHHHHHHHhcccChHH-------HHHHHHHHHHHHHHHhhccccccCcccccc-c
Confidence 11111 0 001110 111 4555555555544333332333 33444444444443322 122 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
.+.++.|..++..+.+++..++.....|+.....+..+. ......+.++..|+-+..--+.-|+.+
T Consensus 309 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~--------------~~~~~~~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 309 NPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL--------------RTIPEVEAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777776666666665555444444433332221 111112467777888888888888888
Q ss_pred HHHHHHH
Q 008671 433 EMRLEEA 439 (557)
Q Consensus 433 ~~e~eqa 439 (557)
...++++
T Consensus 375 ~~r~eea 381 (498)
T TIGR03007 375 LTRRESA 381 (498)
T ss_pred HHHHHHH
Confidence 8888773
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.32 E-value=7.6 Score=38.22 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=70.3
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHH---HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH-----------HH
Q 008671 410 VTDSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-----------KE 475 (557)
Q Consensus 410 ~~~~~v~~lE~~Laqvr~ere~L~~e~eq---a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~-----------ke 475 (557)
.+..++.++...+..+++|--.|+.=.-- |+...+ ....+|=-+|.+-.+++..|+..+.++ |+
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e--~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYE--DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888888877654333 565555 667888888888888888888888666 66
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhh-hhhHHHHhhh
Q 008671 476 AALDIHILRADVLSLTNVLERKV-KECETLLASS 508 (557)
Q Consensus 476 a~~e~~~lr~e~~sl~~~l~~k~-~e~~~l~~~~ 508 (557)
+..++.+++.++.-|....+.|. .|...|..++
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL 127 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNLAEREELQRKL 127 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 77788888888777777766555 4555554443
No 93
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.29 E-value=34 Score=41.81 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+......+-.++.....+++.+.-..++.+...+.+...+..+..++++.+++...+.
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e 432 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE 432 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555566777777777777777777888888888888888888888877775554
No 94
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.06 E-value=0.044 Score=65.13 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 202 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+..|..-..++-..++.+..++..+..++..++-......+++-.|+++++++...++.+++..-.|..+
T Consensus 372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~E 441 (859)
T PF01576_consen 372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDE 441 (859)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666667777777777777777777777778888888888888888888777766555544
No 95
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.06 E-value=21 Score=38.88 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 008671 423 QKQIDEKNRIEMRLEE 438 (557)
Q Consensus 423 aqvr~ere~L~~e~eq 438 (557)
.++-.|++-|.+++.|
T Consensus 211 dkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 211 DKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455566666666655
No 96
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.97 E-value=21 Score=38.62 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=36.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhc---cHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS---FPEDMSAMQRQLSKY 473 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisS---lq~~~~~Lk~ev~R~ 473 (557)
......-..|+++-+.+-.|+.++..-....- ..+++...|.++ ||.--.+||+++.++
T Consensus 130 ~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~--ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 130 QNLAKAQQELARLTKQAQDLQTRLKTLAEQRR--QLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777777766433322 455555555443 444467888888777
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.93 E-value=19 Score=37.98 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 008671 324 KGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVK---NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL 400 (557)
Q Consensus 324 e~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~---~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~ 400 (557)
..|.++|..|..|.++|+.+....+ =.+=+.+. .||...+.++..+..+ |-.-...+.+|-.|.
T Consensus 170 k~LEeEN~~LR~Ea~~L~~et~~~E----ekEqqLv~dcv~QL~~An~qia~LseE---La~k~Ee~~rQQEEI------ 236 (306)
T PF04849_consen 170 KSLEEENEQLRSEASQLKTETDTYE----EKEQQLVLDCVKQLSEANQQIASLSEE---LARKTEENRRQQEEI------ 236 (306)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhcc----HHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHH------
Confidence 3445577777777777776644220 00111122 2334444444333333 444444455542122
Q ss_pred HHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008671 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (557)
Q Consensus 401 ~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~ 443 (557)
-+ +-++|.+++..+.++-.|-++|..-+..+...+
T Consensus 237 ----t~----LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 237 ----TS----LLSQIVDLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred ----HH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11 237899999999999999888866655544333
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=91.59 E-value=37 Score=40.73 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=15.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH
Q 008671 449 IAEFRALVSSFPEDMSAMQRQLSKYK 474 (557)
Q Consensus 449 ~~Emr~LisSlq~~~~~Lk~ev~R~k 474 (557)
.....++++....++..++.++..++
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIE 489 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667766666666666665443
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.41 E-value=42 Score=41.06 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
+|..+..+.+...++++.+-.....-+.........++.-++.....+..++..|.+++.
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555555555555555555555555555555444444443
No 100
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.95 E-value=27 Score=38.05 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 238 ~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
.....-..-|..+++.+..++..++.+|...+.+
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567888999999999999999999888855
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.90 E-value=1.6 Score=42.64 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~ 382 (557)
-++..++.++..........|..+..++..+..++..+...++.- ......|++.+..+..++.-...-+.+|+.
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek-----~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK-----NKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777778888888888888888888777744 223345555555555555555566666788
Q ss_pred HHHHHHH
Q 008671 383 EKDNLAW 389 (557)
Q Consensus 383 er~~~~r 389 (557)
|-..++.
T Consensus 173 En~~Lv~ 179 (194)
T PF08614_consen 173 ENRELVE 179 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888873
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.86 E-value=36 Score=39.23 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRET 392 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~ 392 (557)
...-..+..||+.|+.+...+..++..+... ++.++..+..+..++.+.+...+.++.+..-+.+- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~------------~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~-~ 386 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAE------------IKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT-V 386 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344667788888888888887777777654 45666667777777777777766666555422222 2
Q ss_pred HhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 008671 393 ELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (557)
Q Consensus 393 E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R 472 (557)
++.- + .+.-|.+|+.-+..-..-...|..+++.. |.|...|.+.|-.+..++....+..+..
T Consensus 387 ~lL~--d-----------~e~ni~kL~~~v~~s~~rl~~L~~qWe~~-----R~pL~~e~r~lk~~~~~~~~e~~~~~~~ 448 (594)
T PF05667_consen 387 ELLP--D-----------AEENIAKLQALVEASEQRLVELAQQWEKH-----RAPLIEEYRRLKEKASNRESESKQKLQE 448 (594)
T ss_pred HHhc--C-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3321 1 12233333333333333333333333322 1356666666655555444444444444
Q ss_pred HHHHHHHHHHHHH
Q 008671 473 YKEAALDIHILRA 485 (557)
Q Consensus 473 ~kea~~e~~~lr~ 485 (557)
.|....++..+-.
T Consensus 449 ik~~r~~~k~~~~ 461 (594)
T PF05667_consen 449 IKELREEIKEIEE 461 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 4433333333333
No 103
>PF13514 AAA_27: AAA domain
Probab=90.85 E-value=50 Score=40.86 Aligned_cols=50 Identities=12% Similarity=0.333 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHH
Q 008671 44 QFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELI 93 (557)
Q Consensus 44 qfQn~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ 93 (557)
.|-.-.-..++..-++.+..++.++.++..+...-..-+-.+..-|..+-
T Consensus 542 ~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 591 (1111)
T PF13514_consen 542 RLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALW 591 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666677777777777777777777777777777777543
No 104
>PF15294 Leu_zip: Leucine zipper
Probab=90.68 E-value=23 Score=36.78 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----c-cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKS----V-KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 316 A~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d----~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
+...-..+..|.........++-..|..+.- + .-...|.+|+.++.-+..=+.+...+|.-
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKR 275 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHH
Confidence 5555557777888888888888777777662 2 45567999999999888877777766655
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.61 E-value=24 Score=36.89 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+.+..++..+.+.-+.|.++-+.|..+.+.+++.....-.++.++++.-+++-..+...++....++..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888888888888888888888888888888888888888877766666533
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.38 E-value=21 Score=41.92 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 240 DKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
...++.+|..+|..++.+...++.+++.++..
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999888888888777644
No 107
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=45 Score=39.39 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=61.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CCc-hhHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASRE---PGR-KEIIAEFRALVS----SFPEDMSAMQRQLSKYKEAALDIHIL 483 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~---~~~-k~i~~Emr~Lis----Slq~~~~~Lk~ev~R~kea~~e~~~l 483 (557)
.++..++...+.+...+...+..+...++.. .|. -++.+.=..+|+ .|+.++.-....+.. -...+.++
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~---ltEk~~sl 881 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKE---LTEKISSL 881 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHH---HhhhhhhH
Confidence 4566666666766666666665555442211 111 122222222222 244444444444422 22333333
Q ss_pred HHHHHh--HHHHHH-Hhh-----------hhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 484 RADVLS--LTNVLE-RKV-----------KECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 484 r~e~~s--l~~~l~-~k~-----------~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
.+.+.+ +..++. .|. .|.+++.--.++|-.-|..|+..+++|.+-.-|..--.
T Consensus 882 ~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~ 948 (970)
T KOG0946|consen 882 EAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEK 948 (970)
T ss_pred HHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhh
Confidence 333332 222222 221 24556666678888888888888888887765554433
No 108
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.86 E-value=44 Score=38.72 Aligned_cols=408 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcccCCCCcccccccccc
Q 008671 40 TAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIE 119 (557)
Q Consensus 40 ~~vLqfQn~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~~~~~~~~~~~~~~~~ 119 (557)
++-|+---.||+-+..++-..|.-|+.++.+ -|..+-..+....-|..+..-|-.
T Consensus 455 I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke-------~etl~~K~ge~i~~L~sE~~~lk~------------------ 509 (961)
T KOG4673|consen 455 INQLMAEGEKLSKKQLAQSAIIKKLRAKIKE-------AETLEEKKGELITKLQSEENKLKS------------------ 509 (961)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHhhhHHHHHHHHHHHHHH------------------
Q ss_pred CCCCCCCchHHHHHHhhccccCCCCCCCCcchHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhh
Q 008671 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQ 199 (557)
Q Consensus 120 ~~~~~~~~~~FL~~Ll~~~~t~~s~d~~~~~~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~ 199 (557)
.-.+ .+++|..++.-+..-..-+.+.-+-+...+.+.+.+-..+.+ .+
T Consensus 510 ----------------------il~~---Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a-------~q 557 (961)
T KOG4673|consen 510 ----------------------ILRD---KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA-------EQ 557 (961)
T ss_pred ----------------------Hhhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HH
Q ss_pred hhccccHHHH-HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 008671 200 KASSNLQSEV-KNLRLALMDLHLKHKSLTRELQSRQDIDAKDKA----KLNRLKGELESAVKELEECNCKLAALRAERDV 274 (557)
Q Consensus 200 ~~n~~L~~E~-~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~----e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~ 274 (557)
..|+.+.... +.-+..-+.+.+.|-.|..++..++..+.+.+. +-..+.+++++++-+|..+++|...+..+
T Consensus 558 at~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~--- 634 (961)
T KOG4673|consen 558 ATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ--- 634 (961)
T ss_pred HhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q ss_pred ccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHH------HHhhhcc
Q 008671 275 TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASH-QLLELKGLH--DGRIKVLQQLY------NLQNTLK 345 (557)
Q Consensus 275 ~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~-Rl~ELe~l~--~e~~~l~~e~~------~Lk~~l~ 345 (557)
-|.++..--+.++.|+..+.-...-=++ -..=+++|- +-......+.+ -|...+.
T Consensus 635 ----------------v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~ 698 (961)
T KOG4673|consen 635 ----------------VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFS 698 (961)
T ss_pred ----------------ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q ss_pred cccccccChhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhH
Q 008671 346 SVKCLSSSKAFLSVKNQLEK-----------SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSK 414 (557)
Q Consensus 346 d~~~I~~S~~Yk~L~~Q~~~-----------lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~ 414 (557)
=.+.-..+.....=+.||+. .+.++-.|+.+++.|+..-+.+..-.++.. +...-..+..+ -.
T Consensus 699 l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k---~~~~q~lq~~l---l~ 772 (961)
T KOG4673|consen 699 LPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK---RKHKQELQEVL---LH 772 (961)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHH---HH
Q ss_pred HHHHhHHH---HHHHHHHHH------------------------HHHHHHH----HhcCCCchhHHHHHHHHHhccH---
Q 008671 415 IADLGIEI---QKQIDEKNR------------------------IEMRLEE----ASREPGRKEIIAEFRALVSSFP--- 460 (557)
Q Consensus 415 v~~lE~~L---aqvr~ere~------------------------L~~e~eq----a~~~~~~k~i~~Emr~LisSlq--- 460 (557)
|.....++ .+.|.+.+. +.+.|+- -....|+.++...-.||-+...
T Consensus 773 ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~~f~~dd~s~~~s~gqq~~~~~~~hl~~~~~ntt 852 (961)
T KOG4673|consen 773 VELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNSAFENDDFSEKRSMGQQEATMSPYHLKSITPNTT 852 (961)
T ss_pred HHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchHhHhcccchhhccchhhhhcCCCCCcccchhHHhhhcCCCc
Q ss_pred --HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 461 --EDMSAMQRQLSKYKE-----AALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 461 --~~~~~Lk~ev~R~ke-----a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
+|+..|..+ || .+-+|.+|.+.-.+|..-|.+-+.||..|..+ +..+-.+++..++|++--.
T Consensus 853 t~eh~eall~Q----reGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek----~~~~p~~~~~ledL~qRy~--- 921 (961)
T KOG4673|consen 853 TSEHYEALLRQ----REGELTHLQTELASLESIRSSLAEELVKLTAECEKLREK----ADRVPGIKAELEDLRQRYA--- 921 (961)
T ss_pred hHHHHHHHHHh----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHc
Q 008671 534 LILDMYR 540 (557)
Q Consensus 534 l~ldmy~ 540 (557)
.+|.|||
T Consensus 922 a~LqmyG 928 (961)
T KOG4673|consen 922 AALQMYG 928 (961)
T ss_pred HHHHHhc
No 109
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.84 E-value=29 Score=36.66 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDL 525 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~ke-a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l 525 (557)
++..+++..-..|..+...|+.-..-... -+.++..+|+++......+..+..++..+......-...|.........+
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443322211 23344445555555555555555555555555555555555555555555
Q ss_pred hhhHHHHHHHHHHHc
Q 008671 526 TDSNLELKLILDMYR 540 (557)
Q Consensus 526 ~~~~~eL~l~ldmy~ 540 (557)
+..-.+++-+++-.+
T Consensus 252 ~~~I~~ae~~~~~~r 266 (312)
T smart00787 252 NTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHhcC
Confidence 555555555444333
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.67 E-value=17 Score=37.02 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=60.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRAD 486 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~--~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e 486 (557)
.++..+...+++++.+.+.|+.+++..+.... ....+.+++.-+..++.++..++..+.+. .+....+..++..
T Consensus 20 ~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 20 NRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999776332 35577788888888888888888888555 3445555555555
Q ss_pred HHhHHHHHH
Q 008671 487 VLSLTNVLE 495 (557)
Q Consensus 487 ~~sl~~~l~ 495 (557)
++..+..+.
T Consensus 100 l~~~~~~l~ 108 (302)
T PF10186_consen 100 LEQRRSRLS 108 (302)
T ss_pred HHHHHHHHH
Confidence 555555554
No 111
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.66 E-value=31 Score=36.63 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHH
Q 008671 240 DKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQ 319 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~R 319 (557)
-+.+-.+.+...|.++.++....++...+..+ +. |.+. .+++|+. ....|-.-+.+.++..-+=
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~--~~-~~~d-------~~~~~~~------~~~~La~lL~~sre~Nk~L 84 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQE--AA-GFGD-------PSIPPEK------ENKNLAQLLSESREQNKKL 84 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hc-ccCC-------ccCCccc------chhhHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777655533 11 1111 1111111 1233444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
..|++.|++.+.++..++--|++.+.
T Consensus 85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 85 KEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 56677777777777777666666655
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.66 E-value=46 Score=38.60 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=48.2
Q ss_pred hHHHHHHHHHH--HHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 008671 161 PRTKNIVSNIL--AAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238 (557)
Q Consensus 161 ~~tk~~l~~l~--~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~ 238 (557)
...+.++..|+ +.++.+..-.+.+.....+.. ....+..+...|...+..+..+...+..++..++....
T Consensus 169 ~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--------~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele 240 (650)
T TIGR03185 169 SLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--------LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELE 240 (650)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677777777 456655554444443333221 12245556666777777777777777777777666666
Q ss_pred HHHHHHHHHHHH
Q 008671 239 KDKAKLNRLKGE 250 (557)
Q Consensus 239 ~~e~e~~eL~~~ 250 (557)
..+.++.+++..
T Consensus 241 ~a~~~l~~l~~~ 252 (650)
T TIGR03185 241 EAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHH
Confidence 666666655553
No 113
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.90 E-value=44 Score=37.43 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---ccccccc---cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTL---KSVKCLS---SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l---~d~~~I~---~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~ 394 (557)
..++.|++.+..+.++|..|..+- +-+.++. ++..|..+-.++.+. +++.+..-+.|+.-=+.+-++- |.
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelrdt---N~q~~s~~eel~~kt~el~~q~-Ee 234 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDT---NTQARSGQEELQSKTKELSRQQ-EE 234 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 456667777777777777777652 2233332 344564444455555 4444444444665555555552 33
Q ss_pred hhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 008671 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYK 474 (557)
Q Consensus 395 ~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~k 474 (557)
+ -+. .+++.++..++--|+.+.|++-.-+.....+.. +--+|.+.| ++...-.- .-+-
T Consensus 235 ~----------skL---lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~--ql~aE~~El----eDkyAE~m---~~~~ 292 (596)
T KOG4360|consen 235 N----------SKL---LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQR--QLTAELEEL----EDKYAECM---QMLH 292 (596)
T ss_pred H----------HHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHH----HHHHHHHH---HHHH
Confidence 1 222 378888999999999999988766655544444 333343333 23322222 2237
Q ss_pred HHHHHHHHHHH
Q 008671 475 EAALDIHILRA 485 (557)
Q Consensus 475 ea~~e~~~lr~ 485 (557)
||+.|+.+||.
T Consensus 293 EaeeELk~lrs 303 (596)
T KOG4360|consen 293 EAEEELKCLRS 303 (596)
T ss_pred HHHHHHHhhcc
Confidence 78888888776
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.72 E-value=30 Score=35.25 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCC
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~ 287 (557)
++.+|....+....-.+.+-.++..+.+.+...+.+++.+++++-....++.+++.|++++.....+ .
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---v--------- 85 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---V--------- 85 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c---------
Confidence 3444444444444444445555555566666689999999999999999999999998887643211 1
Q ss_pred CCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 288 ~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
...+.+.+|+-++..++.-..+=-.||..++.+...+..++..++-.+.
T Consensus 86 ---------~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 86 ---------KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122478888888888887777777777777777777777777766544
No 115
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.38 E-value=72 Score=39.23 Aligned_cols=286 Identities=11% Similarity=0.080 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCC---
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL--- 285 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~--- 285 (557)
...+...+...++.--....-+....-..+.+++..+..-.+.....-..+++++.|..|-.+--.....+...+..
T Consensus 1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~ 1496 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEE 1496 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34445555555555555555555555555556666666666666666667777776666653311111100000000
Q ss_pred -CC----CCCCCCccchhhhchHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008671 286 -GN----KHVAGDRVRDEQRDLRDMESVHKE-----------------LMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (557)
Q Consensus 286 -~~----~~~~~~~~~~~~k~~~eL~~~leE-----------------~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~ 343 (557)
.+ -.+ |.++ . .++.|-.++.| -.+.|++-+.+.++.+..--.+....+..+..
T Consensus 1497 vA~~vL~l~l-p~tp---e-qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~ea 1571 (1758)
T KOG0994|consen 1497 VAEEVLALEL-PLTP---E-QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEA 1571 (1758)
T ss_pred HHHHHHhccC-CCCH---H-HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 00 000 0001 0 02222222222 12334444444444444444444444444444
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHH
Q 008671 344 LKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ 423 (557)
Q Consensus 344 l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~La 423 (557)
|... ...|...++=++-..+....++.++++.|. .+ .++|...... -.++.+|+..+.
T Consensus 1572 L~~A-----d~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~-----------~t---~~aE~~~~~a---~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1572 LEEA-----DVAQGEAQDAIQGADRDIRLAQQLLAKVQE-----------ET---AAAEKLATSA---TQQLGELETRME 1629 (1758)
T ss_pred HHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HH---HHHHHHHHHH---HHHHHHHHHHHH
Confidence 3322 223344444444444444444444333332 22 2222222222 256777777776
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc-hh----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 424 KQIDEKNRIEMRLEEASREPGR-KE----IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV 498 (557)
Q Consensus 424 qvr~ere~L~~e~eqa~~~~~~-k~----i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~ 498 (557)
.++..+-..-.+-.++..-.|- +. .-..++.|=+..+.-..-++.-...--.|+..+..||.++..|...--+|.
T Consensus 1630 ~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1630 ELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554333333332222221 11 111222222223333333333334446688889999999988888888888
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHH
Q 008671 499 KECETLLASSADQVAEIHKLQAM 521 (557)
Q Consensus 499 ~e~~~l~~~~~~~~~~i~~l~~~ 521 (557)
.-++.|.-.+-+.-..|.+..+.
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888875544433333333333
No 116
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=68 Score=38.75 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 008671 474 KEAALDIHILRADVLSLTNVLERKVKECETLLASS 508 (557)
Q Consensus 474 kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~ 508 (557)
|+.--|=.+++..+.++...|++....+.+...|.
T Consensus 470 k~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~ 504 (1200)
T KOG0964|consen 470 KELWREEKKLRSLIANLEEDLSRAEKNLRATMNRS 504 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44555556667777777777777776666665553
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.13 E-value=7.3 Score=35.50 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=52.1
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHH
Q 008671 351 SSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430 (557)
Q Consensus 351 ~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere 430 (557)
.++...-.|++++..+..++-.++..+..|+.+|+.....+...+-.+|. .+.. ..++..|+..+..+...|+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----~~~~---~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE----LRAL---KKEVEELEQELEELQQRYQ 85 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34557888999999999999999999999999999998776555532332 1111 2455566655555555555
Q ss_pred HH
Q 008671 431 RI 432 (557)
Q Consensus 431 ~L 432 (557)
.+
T Consensus 86 t~ 87 (120)
T PF12325_consen 86 TL 87 (120)
T ss_pred HH
Confidence 54
No 118
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=88.06 E-value=14 Score=35.24 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=90.4
Q ss_pred hHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhh---hccccHHHHHHHHHHHHHHHHHhHHHH
Q 008671 151 QMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQK---ASSNLQSEVKNLRLALMDLHLKHKSLT 227 (557)
Q Consensus 151 ~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~---~n~~L~~E~~~Lq~~~~~L~~khk~ls 227 (557)
-.+..|+.+.......+.......+......+-....|..-. +....+ .+...-.+...++...+.|..+|..+.
T Consensus 15 R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~--~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 15 RRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHD--ARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776666666666655420 000011 122345677889999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.++..+++.+.....++......|--..+.++.++.++++++
T Consensus 93 ~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~ 134 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLR 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997
No 119
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.97 E-value=35 Score=35.15 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 204 NLQSEVKNLRLALMDLHLKHKS-LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~-ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
.|...-..+.+.++.|.-+++. +-.--..++.--.+.++++..|+.+++.+.+++.++..-|.-|..=.+ .+||+..
T Consensus 42 ~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~ 119 (258)
T PF15397_consen 42 KLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKA 119 (258)
T ss_pred HHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHH
Confidence 3444455667777777777666 445555666677778888888999999999999988888877762222 3443221
Q ss_pred cCCCCCCCCCCccchhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 283 LNLGNKHVAGDRVRDEQRDLRDME-SVHKELMDQASHQLLELKGLHDGRIKVLQQLYN 339 (557)
Q Consensus 283 ~~~~~~~~~~~~~~~~~k~~~eL~-~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~ 339 (557)
-.+++-.+.+..+. ..-+|+-++...+..++..+......-.+++-.
T Consensus 120 ----------vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~ 167 (258)
T PF15397_consen 120 ----------VQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILS 167 (258)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122222233332 233445555555666666666666555555433
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.94 E-value=4.7 Score=39.37 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcc
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~ 280 (557)
....+..-+..++..++.+|-.+-.+...+-.+.+.+...+.++......|.++..++...+.++..+..+-.
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~------- 140 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK------- 140 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3345566677788888888888888888888888888888888888888888888888888888877663311
Q ss_pred cccCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 281 PVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (557)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk 341 (557)
.+.+.++.+.+++.-+....+.--..+.+|+.||..|++-.=..+
T Consensus 141 ----------------ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 141 ----------------EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122346788888888888888888888888888888887654443
No 121
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.93 E-value=52 Score=37.09 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------chHHHHHhhhhhhhhHHHHHhHHHHHHHHH
Q 008671 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKI---------DLVDVFRRSSAVTDSKIADLGIEIQKQIDE 428 (557)
Q Consensus 358 ~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~---------E~~e~~~~~~~~~~~~v~~lE~~Laqvr~e 428 (557)
.++.-....++++.+|+.-+-+.-..++......++-+... |..++ ++-......++..|+..+.+++.+
T Consensus 225 l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l-~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 225 LLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEEL-KQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444666666776444445555555554444411110 12222 111112245555555555555555
Q ss_pred HHHHHHHHHH
Q 008671 429 KNRIEMRLEE 438 (557)
Q Consensus 429 re~L~~e~eq 438 (557)
-.++..++..
T Consensus 304 ~~d~e~~~~~ 313 (511)
T PF09787_consen 304 LQDLEAQLEG 313 (511)
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.85 E-value=40 Score=35.61 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cccc-cccccChhHHHHHHHHHHHHHHH-HH-
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT-------LKSV-KCLSSSKAFLSVKNQLEKSKSEV-FK- 372 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~-------l~d~-~~I~~S~~Yk~L~~Q~~~lkael-d~- 372 (557)
+.|...+..++.--..-..||...+.....|..++..|+.. .... +||.++ .++-|+. +..=+..+ -.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~-LlKkl~~-l~keKe~L~~~~ 100 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNT-LLKKLQQ-LKKEKETLALKY 100 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHH
Confidence 34444444444443444456666666666666666666543 2222 788844 4444433 22211111 01
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhhhch---HHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 373 ----------YQALFEKLQVEKDNLAWRETELNMKIDL---VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 373 ----------~R~l~ekLQ~er~~~~rq~~E~~~k~E~---~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
+..-+.+|+.++..+=.+. +.|- ..-.++.+..++.+...+...|-++|+++-+|..-+|+
T Consensus 101 e~EEE~ltn~L~rkl~qLr~EK~~lE~~L-----e~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~- 174 (310)
T PF09755_consen 101 EQEEEFLTNDLSRKLNQLRQEKVELENQL-----EQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ- 174 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-
Confidence 1222334455554332221 1121 11112233333444455556667777777776655554
Q ss_pred hcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 440 SREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 440 ~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
|=-+||+.|+++|..|..+-+.+
T Consensus 175 -----------EQE~lvN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 175 -----------EQEALVNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999886555
No 123
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.65 E-value=41 Score=35.53 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK--SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~--d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ek 379 (557)
|.+++..+.-.-++-..=..|.+++......|-+++..++.+.. |..+|.-..++..+..++..++..++.+.++|-.
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999877 4477777779999999999999999999999999
Q ss_pred HHHHH
Q 008671 380 LQVEK 384 (557)
Q Consensus 380 LQ~er 384 (557)
||++|
T Consensus 305 LQ~er 309 (309)
T PF09728_consen 305 LQAER 309 (309)
T ss_pred HhhCC
Confidence 99876
No 124
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.57 E-value=18 Score=33.73 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
+.+|-..++.....-..=...+..+..++..+...++.|+.++... ++.........++.++..+...+...+.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666777666666667777777777777777777777766644 22332334444555554444444444444
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.40 E-value=29 Score=32.52 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhc
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRD 301 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~ 301 (557)
|+..+..++.+ .+.+..-|++.++.+..+|+.+......+..+.- +..+.
T Consensus 4 K~l~v~~kLK~-------~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daE-----------------------n~k~e 53 (140)
T PF10473_consen 4 KFLHVEEKLKE-------SESEKDSLEDHVESLERELEMSQENKECLILDAE-----------------------NSKAE 53 (140)
T ss_pred HHHHHHHHHHH-------HHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------------HHHHH
Confidence 44555555555 5555555555555555555555544433332200 11223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~ 347 (557)
++.|+.++.....=-+.=-.||..+..++..|.++++.+|.++..+
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444445566677777777777777776665554
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.03 E-value=13 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~ 342 (557)
..+|+.++-........=..|++.|+.+|.+|=+.+-=|+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35777777777777777777777777777777777666654
No 127
>PRK11281 hypothetical protein; Provisional
Probab=85.99 E-value=1e+02 Score=38.34 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCcc----chhhhchHHHHHHHH
Q 008671 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV----RDEQRDLRDMESVHK 310 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~----~~~~k~~~eL~~~le 310 (557)
+.....+.+.+.|+.+++++..++..+.+++++++.+..... ..+. .+.+...- ......+++.+..+.
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~--~~~~-----~~~Sl~qLEq~L~q~~~~Lq~~Q~~La 145 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET--RETL-----STLSLRQLESRLAQTLDQLQNAQNDLA 145 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccc--cccc-----cccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447788899999999999999999999998874211110 0000 01000000 000011223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 311 E~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
++.......-...++.+.........++.++..+.+. +-+. -.....|+.+...++++++-.|.+
T Consensus 146 ~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~-~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 146 EYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALR-PSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445566666666666777777666643 2222 234666777777788877777776
No 128
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.82 E-value=82 Score=37.19 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWR--ETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq--~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~ 443 (557)
+++-++....+-.+||--|-..-.+ +++.+-+ .-|+.+-.+..+..+|..+..+|.++.-|+-.|...+.+.-.+.
T Consensus 446 letLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~--q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTK--QRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHhhhhhhheeccchHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 6677777888878888776555433 1121100 00111222222246777788888888888888888887733333
Q ss_pred Cc-hhHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHhHHHHHHHhh
Q 008671 444 GR-KEIIAEFRALVSSFPEDMSAMQRQLSKY-KEAAL---DIHILRADVLSLTNVLERKV 498 (557)
Q Consensus 444 ~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~---e~~~lr~e~~sl~~~l~~k~ 498 (557)
+- ..-..++..+....+--..+++-++.-+ ||+.+ ++..+...+..|+..+..+.
T Consensus 524 ~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~ 583 (1118)
T KOG1029|consen 524 KETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQ 583 (1118)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 31 2234555555554444455555555444 33332 33334444444444444443
No 129
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.81 E-value=25 Score=32.71 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 008671 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQD 235 (557)
Q Consensus 156 L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d 235 (557)
.......+-++|..|+...+.-....+.+...+.....+-.-....+..|...+..++..+..++.+++.+..++..+..
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888888887777777777777765311000011134455556666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 236 IDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 236 ~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
.+-....++..++..+......+.--.|
T Consensus 109 ~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 109 KLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555444433
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.67 E-value=22 Score=32.34 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHH---HhhhhhHHHHhhhhHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLE---RKVKECETLLASSADQVAEIHKL 518 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~---~k~~e~~~l~~~~~~~~~~i~~l 518 (557)
-.++..|..-|-.+..++.+++.++.++ ..+..||.++-.+.+.++.... .-..+++.|..||..-..-+.+=
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3456666666777777777788777777 5577788887777655544333 22356777777776655444444
Q ss_pred HHHHHHHhhhHHHHH
Q 008671 519 QAMVQDLTDSNLELK 533 (557)
Q Consensus 519 ~~~~~~l~~~~~eL~ 533 (557)
-..++.|+---.+||
T Consensus 95 ~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 95 SEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 131
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.31 E-value=36 Score=32.61 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekL 380 (557)
+|+-|+-+...+.+--.-|-.||.+|+......+.-+++.+-++... +..+..++.++......+..+|..+..+
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~-----~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL-----SEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999998754 6688899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008671 381 QVEKDNLAWRETE 393 (557)
Q Consensus 381 Q~er~~~~rq~~E 393 (557)
..+|+.+.+...+
T Consensus 118 k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 118 KKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877433
No 132
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.02 E-value=79 Score=36.31 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc------cccccChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSV------KCLSSSKA----FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAW 389 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~------~~I~~S~~----Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~r 389 (557)
+.+|+..+.....+.++++.|...+.-. .-|.+... --..-+-+..|..++.+.++- ++.++.+|.-
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e~~~~ 317 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEEREKHKA 317 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5566666666666666666666555411 11111111 111333444466777777766 7777877777
Q ss_pred HHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH--H--hcCCCc-hhHHHHHHHHHhccHHHHH
Q 008671 390 RETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE--A--SREPGR-KEIIAEFRALVSSFPEDMS 464 (557)
Q Consensus 390 q~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq--a--~~~~~~-k~i~~Emr~LisSlq~~~~ 464 (557)
++ -.. | +..++ +.+.+.+++..|.. |++||++.-|+-- + -..++- .+-...+..|=+.|=..|.
T Consensus 318 qI-~~l---e-----~~l~~-~~~~leel~~kL~~-~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr 386 (629)
T KOG0963|consen 318 QI-SAL---E-----KELKA-KISELEELKEKLNS-RSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNR 386 (629)
T ss_pred HH-HHH---H-----HHHHH-HHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHh
Confidence 74 221 2 22111 25777888877754 4999999888876 1 111111 1333567778888888899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008671 465 AMQRQLSKYKEAALDIHI 482 (557)
Q Consensus 465 ~Lk~ev~R~kea~~e~~~ 482 (557)
.|+.|+..||-+.+...-
T Consensus 387 ~lq~e~a~Lr~~n~~~~~ 404 (629)
T KOG0963|consen 387 KLQNENASLRVANSGLSG 404 (629)
T ss_pred hhhHHHHHHhccccccch
Confidence 998888777766655544
No 133
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.92 E-value=72 Score=35.76 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=56.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH----HhcCCCc---hhHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEE----ASREPGR---KEIIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRA 485 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eq----a~~~~~~---k~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~e~~~lr~ 485 (557)
+-...+..++.+...++.|..+|+. .+.+.++ .....-|..|+.=|...+...+..|... ++-..+-..|+.
T Consensus 93 ~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~ 172 (475)
T PRK10361 93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777777778888887 4444443 2344567888999999999999998654 666677788888
Q ss_pred HHHhHHHHHHH
Q 008671 486 DVLSLTNVLER 496 (557)
Q Consensus 486 e~~sl~~~l~~ 496 (557)
++.+|...-.+
T Consensus 173 qi~~L~~~n~~ 183 (475)
T PRK10361 173 EIRNLQQLNAQ 183 (475)
T ss_pred HHHHHHHHHHH
Confidence 87776654433
No 134
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.58 E-value=5.5 Score=40.62 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 217 MDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 217 ~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
..|..+...+..++..+.........+..+|+.+|..++..+.++..+|..+-
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~ 130 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM 130 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666667776677777778888888888888888887777775543
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.49 E-value=73 Score=35.48 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCC
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~ 287 (557)
|+.++...+..|..|.+.|......++......+.+...+-|-++.++.++++-+-.+..|+...+.....-. +
T Consensus 289 ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~------k 362 (622)
T COG5185 289 EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR------K 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------h
Confidence 5556777778889999999999999999888888888888888888888888887777777655443211000 1
Q ss_pred CCCCCCcc-------chhhhc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 288 KHVAGDRV-------RDEQRD-------LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 288 ~~~~~~~~-------~~~~k~-------~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
.+.++... ..-.++ ...|...+.+..-.|.-+..+|+++-.+...+...+.--...++
T Consensus 363 q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~ 434 (622)
T COG5185 363 QGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIG 434 (622)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHh
Confidence 11111111 000001 24555666666667777777777777777766666665544444
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.32 E-value=7.2 Score=38.78 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=33.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl 490 (557)
+.++..++.+++.++.+.+.+..++.+..++.. ....+....++.|.++|.+|+.++. .++.++..++++...+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~--~~~~~~~~~~~~L~~~n~~L~~~l~---~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ--QKVAQSDSVINGLKEENQKLKNQLI---VAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344555555555555444444433332111111 1222233345556666666666663 3444444445444433
No 137
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.04 E-value=54 Score=33.63 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA--WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~--rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
.|......-+.|+--.-.|..-+...+-|-+.|. .+++|.+ +++++.|+|..+..+-.+-.-|
T Consensus 7 ~fss~~eE~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~Eae---------------lesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 7 TFSSDLEEDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAE---------------LESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555565555555555433444444443 2233443 3455555555555555555555
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHH
Q 008671 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQV 512 (557)
Q Consensus 433 ~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~ 512 (557)
..+++-.....+ ..-.++-.-++.|.+.+.++......+++.--++.....+++-.+. .++.-...+..|++-.+
T Consensus 72 ~~E~e~~Kek~e--~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR---ati~sleDfeqrLnqAI 146 (333)
T KOG1853|consen 72 TTEQERNKEKQE--DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR---ATIYSLEDFEQRLNQAI 146 (333)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh---hhhhhHHHHHHHHHHHH
Confidence 555554444444 5566677778888888887777665554444444333333322221 12222334444444333
Q ss_pred ----------HHHHHHHHHHHHHhhhHHHHHHHHHHHccCCCCcc
Q 008671 513 ----------AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSR 547 (557)
Q Consensus 513 ----------~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~~d~r 547 (557)
.|-..|-..++-|+++...|.-=|-+-.+-..-||
T Consensus 147 ErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E~pR 191 (333)
T KOG1853|consen 147 ERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPR 191 (333)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 33344445577778777777766666665555555
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.27 E-value=80 Score=35.04 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 237 ~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+...++++..|...+-+-.-.+...+++++.++.+
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555566666533
No 139
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.71 E-value=1.4e+02 Score=37.32 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhh----hHH
Q 008671 353 SKAFLSVKNQLEK-------------SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTD----SKI 415 (557)
Q Consensus 353 S~~Yk~L~~Q~~~-------------lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~----~~v 415 (557)
++.+...+..... +..+++-.|.++|+|+.|-.+-.+-- .|+.|+.+++..= . .+.
T Consensus 1044 ~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~------eel~~a~q~am~g-har~~e~y 1116 (1320)
T PLN03188 1044 SPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCA------EELKEAMQMAMEG-HARMLEQY 1116 (1320)
T ss_pred chhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHH-HHHHHHHH
Confidence 3466666766554 67778888888888888876655431 2334444332210 1 244
Q ss_pred HHHhHHH----HHHHHHHHHHHHHHHHHhcCCCc-hhHHHH---HHHHHhc-----------cHHHHHHHHHHHHHHHHH
Q 008671 416 ADLGIEI----QKQIDEKNRIEMRLEEASREPGR-KEIIAE---FRALVSS-----------FPEDMSAMQRQLSKYKEA 476 (557)
Q Consensus 416 ~~lE~~L----aqvr~ere~L~~e~eqa~~~~~~-k~i~~E---mr~LisS-----------lq~~~~~Lk~ev~R~kea 476 (557)
++|+..- ++-|.-.|-+ .++.-|.+..|. |.-.+= +-+=||+ |.++|..|+.|| ||+
T Consensus 1117 a~l~ek~~~ll~~hr~i~egi-~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~ql---rdt 1192 (1320)
T PLN03188 1117 ADLEEKHIQLLARHRRIQEGI-DDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQL---RDT 1192 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hhH
Confidence 4555443 3333333322 334445555665 322222 2222333 333466666666 555
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHccCCCCccc
Q 008671 477 ALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN-LELKLILDMYRRESTDSRF 548 (557)
Q Consensus 477 ~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~-~eL~l~ldmy~~e~~d~rd 548 (557)
+..++..=.-+--|+.+=+.-+.. ..|...--.|...++.+|.+|+.+. .|+-- +.-|-.||.-|.+
T Consensus 1193 aeav~aagellvrl~eaeea~~~a----~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t-~~q~~aes~l~~~ 1260 (1320)
T PLN03188 1193 AEAVQAAGELLVRLKEAEEALTVA----QKRAMDAEQEAAEAYKQIDKLKRKHENEIST-LNQLVAESRLPKE 1260 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCChh
Confidence 555544333333333322222211 1234444567788888899998887 55533 3333355555554
No 140
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.41 E-value=92 Score=35.12 Aligned_cols=170 Identities=14% Similarity=0.160 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH-HHHHHHHhhhcccc--cccccChhHHHHHHHHHH--H
Q 008671 302 LRDMESVHKELMDQASHQLLELKGL----------HDGRIKV-LQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEK--S 366 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l----------~~e~~~l-~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~--l 366 (557)
...+...|.++......+..+|+.+ +.....+ ...+..|+.++... .+...-..|......|-. +
T Consensus 111 ~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl 190 (511)
T PF09787_consen 111 LAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTL 190 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 4566777777788777777778777 2222222 22235555554433 233444455555444444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCCCc
Q 008671 367 KSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE-ASREPGR 445 (557)
Q Consensus 367 kaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq-a~~~~~~ 445 (557)
+.++ .++.+.+.+.+.+ .+....++...=.+..++.+...-..+..+.+.....+++....|.+...+.. .....-.
T Consensus 191 ~~e~-~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~ 268 (511)
T PF09787_consen 191 KKEI-ERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFD 268 (511)
T ss_pred HHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccc
Confidence 3332 2444444444443 22222112220012334444444444667777777788888999999888888 3332221
Q ss_pred hhH----HHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 446 KEI----IAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 446 k~i----~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
... ..++++=...++.+|..|+.++.-+
T Consensus 269 ~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 269 SSTNSIELEELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred cccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 5677777888888888888887555
No 141
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.16 E-value=1e+02 Score=35.32 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc---ccccccc----ChhHHHHHHHHHHHH-----HHHHHH
Q 008671 307 SVHKELMDQASHQLLELKGLHDGRIKVL-QQLYNLQNTLK---SVKCLSS----SKAFLSVKNQLEKSK-----SEVFKY 373 (557)
Q Consensus 307 ~~leE~~~lA~~Rl~ELe~l~~e~~~l~-~e~~~Lk~~l~---d~~~I~~----S~~Yk~L~~Q~~~lk-----aeld~~ 373 (557)
..+++-...-..-+.++=.+-.+..... .++..|+.-.+ ...|... ...+..|+.++.... .+++..
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~ 280 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEA 280 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 3333333344444555555555555533 66666665544 2244441 224444444444421 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 374 QALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 374 R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
...++.++..=+.+--.. |..-.++... +.....+...|..++..-..|..+++.-.+...
T Consensus 281 ~~~~~~i~~~Id~Lyd~l-------ekE~~A~~~v---ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 281 EEKNEEIQERIDQLYDIL-------EREVKARKYV---EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333333333333332211 1111222222 567777778888888888888877777555533
No 142
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.98 E-value=1.3e+02 Score=36.70 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=54.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
....|..|+.+++.++..|..+......++..-+......+.++..|...++.-+|.|....+
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788889999999999999999998888888888888999999999999999998888776
No 143
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=81.75 E-value=91 Score=34.57 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhh----HHHHHhHHHH----HHHHHHHHHHHHHH
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDS----KIADLGIEIQ----KQIDEKNRIEMRLE 437 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~----~v~~lE~~La----qvr~ere~L~~e~e 437 (557)
|+.+++-+|.++++++.|-..-.+= ..|++++.+++..- .+ +..+|+.... +-|.-.+-+ .++.
T Consensus 300 LR~dle~~r~~aek~~~EL~~Ek~c------~eEL~~al~~A~~G-haR~lEqYadLqEk~~~Ll~~Hr~i~egI-~dVK 371 (488)
T PF06548_consen 300 LRVDLESSRSLAEKLEMELDSEKKC------TEELDDALQRAMEG-HARMLEQYADLQEKHNDLLARHRRIMEGI-EDVK 371 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6666777777777666665444322 12334444443321 22 3344444432 222222222 3344
Q ss_pred HHhcCCCc-hhHHHH---HHHHHhc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 008671 438 EASREPGR-KEIIAE---FRALVSS-----------FPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECE 502 (557)
Q Consensus 438 qa~~~~~~-k~i~~E---mr~LisS-----------lq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~ 502 (557)
.|.+..|. |.-.+= +-.=||+ |.++|..|+.|+ |||+..++..-.-+--|+.+=+.-+.
T Consensus 372 kaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QL---rDTAEAVqAagEllvrl~eaeea~~~--- 445 (488)
T PF06548_consen 372 KAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQL---RDTAEAVQAAGELLVRLREAEEAASV--- 445 (488)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhHHHHHHHHHHHHHHHHhHHHHHHH---
Confidence 45555554 432221 1222222 233666666666 55555554443333223322222111
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhHH
Q 008671 503 TLLASSADQVAEIHKLQAMVQDLTDSNL 530 (557)
Q Consensus 503 ~l~~~~~~~~~~i~~l~~~~~~l~~~~~ 530 (557)
-..|.+.--.+...++.+|.+|+.+..
T Consensus 446 -a~~r~~~~eqe~ek~~kqiekLK~kh~ 472 (488)
T PF06548_consen 446 -AQERAMDAEQENEKAKKQIEKLKRKHK 472 (488)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344445667778888888887654
No 144
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=81.47 E-value=86 Score=34.12 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=91.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHhhhh--hchHHHHHhhhhhhhhHHHHHhHHH
Q 008671 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEK----DNLAWRE---TELNMK--IDLVDVFRRSSAVTDSKIADLGIEI 422 (557)
Q Consensus 352 ~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er----~~~~rq~---~E~~~k--~E~~e~~~~~~~~~~~~v~~lE~~L 422 (557)
.++-...|...++.|+++++-.|...+.+|..- +.|.+-. .+.+-. ++..+-+++++ +.-.-+-+-.|
T Consensus 289 ~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkki---EdLQRqHqREL 365 (593)
T KOG4807|consen 289 PSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKI---EDLQRQHQREL 365 (593)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 455666777777778888887777766666543 3332110 011100 12233444444 34455667788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHH
Q 008671 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-----------KEAALDIHILRADVLSLT 491 (557)
Q Consensus 423 aqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~-----------kea~~e~~~lr~e~~sl~ 491 (557)
.++|.|+|-|.++-.-| .+.=|-+|-++-+ .-|..|+.+- |....++.++..+++-|+
T Consensus 366 ekLreEKdrLLAEETAA--------TiSAIEAMKnAhr---EEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLS 434 (593)
T KOG4807|consen 366 EKLREEKDRLLAEETAA--------TISAIEAMKNAHR---EEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLS 434 (593)
T ss_pred HHHHHHHHhhhhhhhhh--------hhHHHHHHHHHHH---HHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987764331 1122222323222 2233444333 566777777777887787
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHH
Q 008671 492 NVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLEL 532 (557)
Q Consensus 492 ~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL 532 (557)
..-+.|-.|+-+|....-..-.-+..++.+-+.|.--++||
T Consensus 435 EQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQEL 475 (593)
T KOG4807|consen 435 EQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQEL 475 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777775544433333344444444444444444
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.03 E-value=1.1e+02 Score=35.01 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=23.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
...+..+...|..++.....|..+++...+...
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777777777777777777777555444
No 146
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.83 E-value=36 Score=40.07 Aligned_cols=115 Identities=8% Similarity=0.081 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR 445 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~ 445 (557)
+..++.+++..++..+..-..|+.+. ... +...- .+... .++.+++.+++.++.....|...| .++
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~-~~~---d~~~e-a~~~l---~~~~~l~~ql~~l~~~~~~l~~~~------~~~ 337 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQR-DSV---DLNLE-AKAVL---EQIVNVDNQLNELTFREAEISQLY------KKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCC---CCCHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHh------ccc
Confidence 66666666666666666666666552 221 11000 11121 456667777777666555554333 223
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l 494 (557)
-|.+..++.-+++|+.++..+++++..+-+.+.++..|..+++..+.+.
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 338 HPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888899999988888888778888888888776655443
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.48 E-value=21 Score=31.28 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDI---DAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~---~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
|..+...++..++.|+++...++.++...... ...+..+.+.++.++.++..++..+..++..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999988763 67788888888888888888888877777554
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.38 E-value=1.2e+02 Score=35.89 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=14.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
.....|..++.++..-.+.|..+++.
T Consensus 593 ~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 593 ESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666655554
No 149
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.49 E-value=1.3e+02 Score=35.05 Aligned_cols=74 Identities=8% Similarity=0.177 Sum_probs=48.5
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 008671 408 SAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIH 481 (557)
Q Consensus 408 ~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~ 481 (557)
+..+.+.+-+++.+|.++-..+--+.....-.+..+.+ +....=+.+......+++.+++|=|.....+..+..
T Consensus 379 ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e 453 (716)
T KOG4593|consen 379 ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEME 453 (716)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 33447888899999988888888888877777776664 444444445555555666666666666544444433
No 150
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.40 E-value=1.2e+02 Score=34.54 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 008671 356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435 (557)
Q Consensus 356 Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e 435 (557)
+..++.++..++.....|...++.+...+..+..+. +. ....+..+..++..+.++..++..+-.+
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL-~~-------------l~~~~~~le~L~~el~~l~~~l~~~a~~ 368 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL-DQ-------------LDDSDESLEALEEEVDKLEEELDKAAVA 368 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HH-------------HhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555555554444444332 11 1112345566666666666666655555
Q ss_pred HHH
Q 008671 436 LEE 438 (557)
Q Consensus 436 ~eq 438 (557)
+..
T Consensus 369 Ls~ 371 (563)
T TIGR00634 369 LSL 371 (563)
T ss_pred HHH
Confidence 544
No 151
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.16 E-value=26 Score=28.83 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
|..++..||..++.+--+.-.+-..+..+..........+...-.+..++..+++..++.|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555555555554444445555555555555555555555554443
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.81 E-value=70 Score=31.51 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+++|+..-..+..-.++=...++.+.+.+..|..+++.|+..+++.. .-..-|+. ++.+++.++..+-.|.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q--qal~~aK~-------l~eEledLk~~~~~lE 80 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ--QALQKAKA-------LEEELEDLKTLAKSLE 80 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34554444444444445555666666667777777777766555331 00112222 4555666666666666
Q ss_pred HHHHHHHHH
Q 008671 382 VEKDNLAWR 390 (557)
Q Consensus 382 ~er~~~~rq 390 (557)
.+...+.-|
T Consensus 81 E~~~~L~aq 89 (193)
T PF14662_consen 81 EENRSLLAQ 89 (193)
T ss_pred HHHHHHHHH
Confidence 666666544
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.29 E-value=1.1e+02 Score=33.63 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=19.4
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
++..|..+|...+++|..++--+..-+.
T Consensus 236 L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 236 LKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888777755544444
No 154
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.23 E-value=46 Score=32.55 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=72.4
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSL 490 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ke-a~~e~~~lr~e~~sl 490 (557)
...+..|..++..++.....|..+++.+....+-..--.++-.-+..|+.++..|+.++..|.. --..|..++.++..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4678888888888888888998888886443332233444445567788899999999988844 334677788888888
Q ss_pred HHHHHHhhhhhHHHHhhhhH
Q 008671 491 TNVLERKVKECETLLASSAD 510 (557)
Q Consensus 491 ~~~l~~k~~e~~~l~~~~~~ 510 (557)
+..+.+=++.+-.|..-|..
T Consensus 148 ~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 148 KEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 88888888887777655544
No 155
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.11 E-value=1.4e+02 Score=34.54 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHH---HHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVK---NQLEKSKSEVFKYQAL 376 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~---~Q~~~lkaeld~~R~l 376 (557)
+++|...++++..-...-..+++.+......+..+++..+...... .+..-...|..|- ..+..|++-++....-
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~r 409 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQR 409 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5666677777766666666666666666666666666655554422 1212133333332 2233355555555555
Q ss_pred HHHHHHHHHHHHHHHHHhh-------h--hhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008671 377 FEKLQVEKDNLAWRETELN-------M--KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKE 447 (557)
Q Consensus 377 ~ekLQ~er~~~~rq~~E~~-------~--k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~ 447 (557)
+..|+..=..|+.-.++-. . +.|+-.... .+-..+.++..++.++..--..+..|..+++-...+..|.-
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~-~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~ 488 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQ-EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSA 488 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 5555555544442211110 0 011111111 12223566666666666666666677777777666766666
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRAD 486 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e 486 (557)
+.+=+-.+|....+....+.-=+..-|.-+.||+.+-..
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777654444444433333334444444444443
No 156
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.05 E-value=39 Score=30.94 Aligned_cols=76 Identities=24% Similarity=0.391 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008671 462 DMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537 (557)
Q Consensus 462 ~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ld 537 (557)
++..+++++.++ .++...+..++.++.+...+...-..--..=..+.+..+..|..++.....++..-.+|+--++
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 3344455555555555544444333322333334444555555555555555555555544443
No 157
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.97 E-value=98 Score=32.73 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=11.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
.+..+..-+.+++..++.|..++..
T Consensus 171 ~~~~l~~~~~~l~~~~~~L~~e~~~ 195 (325)
T PF08317_consen 171 QLEQLDELLPKLRERKAELEEELEN 195 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555544444
No 158
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.81 E-value=1.7e+02 Score=35.40 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccC
Q 008671 504 LLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRE 542 (557)
Q Consensus 504 l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e 542 (557)
.-.....+..++..++..++++...-..+.-+-+.|+.-
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (908)
T COG0419 717 LIEELESRKAELEELKKELEKLEKALELLEELREKLGKA 755 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444455555555555555665555555555666666554
No 159
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=77.58 E-value=1.1e+02 Score=33.24 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 008671 254 AVKELEECNCKLAALRAE 271 (557)
Q Consensus 254 ~~~elek~rrKL~~l~~E 271 (557)
..+.++.++..|-.++.|
T Consensus 72 gVfqlddi~~qlr~~rte 89 (499)
T COG4372 72 GVFQLDDIRPQLRALRTE 89 (499)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 455556666655555544
No 160
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.51 E-value=1.8e+02 Score=35.46 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhh
Q 008671 53 KLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMR 102 (557)
Q Consensus 53 qLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r 102 (557)
.|..|-.+.-+|+.+-.+|+...++--.+|..+-+--.-|-.||+....|
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888899999999999999999999999999888888888888887663
No 161
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.20 E-value=34 Score=32.48 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=53.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA-----ALDIHILRAD 486 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea-----~~e~~~lr~e 486 (557)
+.++.+|..++..+..+.-.|+.++..-.. .|.+.||+..|..|..++..|+..+..++.. ..++..+...
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~----~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSS----EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456777777777777777777777766433 3779999999999999999999999988763 4445544444
Q ss_pred HH
Q 008671 487 VL 488 (557)
Q Consensus 487 ~~ 488 (557)
..
T Consensus 154 ~~ 155 (169)
T PF07106_consen 154 YK 155 (169)
T ss_pred HH
Confidence 43
No 162
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.90 E-value=2.2e+02 Score=36.22 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=39.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR---KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADV 487 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~---k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~ 487 (557)
+.++......+.+.+..-...+..+.++..+-+- ..-....+.-+..+....+.+..-+..|..|...+...+.++
T Consensus 806 ~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~l 884 (1353)
T TIGR02680 806 ERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARA 884 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777775554332 223333444444444444444444444444444433333333
No 163
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.32 E-value=74 Score=37.46 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=66.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH----H----HHHHHHHHHH----
Q 008671 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK----Y----KEAALDIHIL---- 483 (557)
Q Consensus 416 ~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R----~----kea~~e~~~l---- 483 (557)
.-|+.+|....+.-|.|..+ ++||...|.++.++|.-+-..+.- + +..-.|..++
T Consensus 437 ~~Lq~ql~es~k~~e~lq~k-------------neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev 503 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQSK-------------NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEV 503 (861)
T ss_pred HHHHHHHHHHHHhHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555566666666666444 445555555555555444433210 0 2223333333
Q ss_pred ---HHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHH
Q 008671 484 ---RADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLEL 532 (557)
Q Consensus 484 ---r~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL 532 (557)
-..+++++--|+.-.+|-.-|-..+.-..+||..|+....+|+.+..-|
T Consensus 504 ~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 504 EEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888899999999999999999987765
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.06 E-value=19 Score=35.81 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHHhH----HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHK----SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk----~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+..|+..|+..+..+..... .+..++....+....++.++++|+.+|+.++.+++.++.+++.++
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444443333 233333334444555777777777777777777777777777766
No 165
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.75 E-value=1.2e+02 Score=32.46 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 008671 511 QVAEIHKLQAMVQD 524 (557)
Q Consensus 511 ~~~~i~~l~~~~~~ 524 (557)
.-.++..++..+..
T Consensus 251 ~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 251 AQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 166
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.65 E-value=19 Score=28.46 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=31.4
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
|...++.+++.|..++..+..++.-|...+..+..|...++.||+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555666666666666666667777777777888888887654
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.14 E-value=25 Score=35.56 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008671 369 EVFKYQALFEKLQVEKDNLAWRE 391 (557)
Q Consensus 369 eld~~R~l~ekLQ~er~~~~rq~ 391 (557)
-+.+|+.+.+.|..||.+|+..+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777888888876443
No 168
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.10 E-value=21 Score=40.69 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 359 L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
|+.+.+.|+..+++++...++|-.+...+.+.+ +. + ..-.+.....+.+|..|+..|..-....++|.-+|.+
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~-~~----~--~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREV-RD----K--VRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----H--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666666666666555442 11 0 0111222223678888888888888888888888887
Q ss_pred -----HhcCCCc----hhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 439 -----ASREPGR----KEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 439 -----a~~~~~~----k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
++.-+|. +++-.=-...|..+...++..+|.|
T Consensus 507 l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDv 547 (652)
T COG2433 507 LRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDV 547 (652)
T ss_pred HHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcE
Confidence 4455666 2233333345677777777777775
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.57 E-value=1.6e+02 Score=33.57 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=164.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCchH
Q 008671 50 LVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDA 129 (557)
Q Consensus 50 L~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (557)
++-.++--+..-.+|+++|+..++ .+..+-..-..|.-|.+|+.-.-.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek----~~~~~eslre~~~~L~~D~nK~~~---------------------------- 280 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREK----DPGKEESLREKKARLQDDVNKFQA---------------------------- 280 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHhHHHHHHH----------------------------
Confidence 455555566666667777764443 455666667778878777654321
Q ss_pred HHHHHhhccccCCCCCCCCcchHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhc--ccCCchhhhhccccHH
Q 008671 130 FLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD--LQDGGSKQKASSNLQS 207 (557)
Q Consensus 130 FL~~Ll~~~~t~~s~d~~~~~~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~--~~~~~~~~~~n~~L~~ 207 (557)
+...+ .....++...+..-++=+...-.-+..++..+++|...+... +..|.. .+..
T Consensus 281 y~~~~---------------~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve------~mn~ 339 (581)
T KOG0995|consen 281 YVSQM---------------KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVE------RMNL 339 (581)
T ss_pred HHHHH---------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH------HHHH
Confidence 11111 111112222222333333333344555556666666666554 221111 2223
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCC
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~ 287 (557)
|...|...+..+..+--.++.++-. ...+++.--.++++.-.+|..+.+||-.--++. +.|-.. ++..++
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~-------~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~--~~n~~~-~pe~~~ 409 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWE-------LKLEIEDFFKELEKKFIDLNSLIRRIKLGIAEN--SKNLER-NPERAA 409 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCc-CCccCc
Confidence 3333444443333333333333333 555555666677777778877777663332221 122000 111111
Q ss_pred CCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHH
Q 008671 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSK 367 (557)
Q Consensus 288 ~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lk 367 (557)
+..-+.. +.. .--++..+++.......+..++..|++..-.+---++.++-.++ -+..++..+.
T Consensus 410 ~~~~d~k--~~V--~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~------------~~~~el~~~~ 473 (581)
T KOG0995|consen 410 TNGVDLK--SYV--KPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILG------------EIELELKKAE 473 (581)
T ss_pred cccccch--hHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 1111111 111 13455666677777777777777777666666555555544333 3455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008671 368 SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKE 447 (557)
Q Consensus 368 aeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~ 447 (557)
+.....|...+.+...-+.+.-+. |- +. ..-.+++.+.+.+.+..++.+..+++.+-...++- +..
T Consensus 474 ~~~~~~k~e~eee~~k~~~E~e~l-e~----~l----~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~ee-----r~k 539 (581)
T KOG0995|consen 474 SKYELKKEEAEEEWKKCRKEIEKL-EE----EL----LNLKLVLNTSMKEAEELVKSIELELDRMVATGEEE-----RQK 539 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 667777777666665555554331 11 11 22333334444555555555444444443333321 134
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQLSKYK 474 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev~R~k 474 (557)
+..++-++|...-+.+..+++.|...|
T Consensus 540 i~~ql~~~i~~i~~~k~~iqs~le~~k 566 (581)
T KOG0995|consen 540 IAKQLFAVIDQISDFKVSIQSSLENLK 566 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777775543
No 170
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.20 E-value=1.2e+02 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 008671 323 LKGLHDGRIKVLQQLYNLQNTL 344 (557)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l 344 (557)
|.+|-.++..|+.++.+|+..|
T Consensus 221 LkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777777777777766
No 171
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.73 E-value=88 Score=30.09 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHhHH
Q 008671 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS----KY-KEAALDIHILRADVLSLT 491 (557)
Q Consensus 417 ~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~----R~-kea~~e~~~lr~e~~sl~ 491 (557)
++|..-+..+.+...|+.++.. -++.....+++-...|+.++..|+.++. +. .+...+++--|.++....
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~-----~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~ 122 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQN-----SRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQ 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444445555555555555542 1133344455555555555554444431 11 223334444444444444
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 008671 492 NVLERKVKECETLLASSADQVAEIHKLQAMVQDLTD 527 (557)
Q Consensus 492 ~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~ 527 (557)
..++.|..+ +.. .-..+|..|++.|+.++-
T Consensus 123 ~~~~~ki~e---~~~---ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 123 AKQELKIQE---LNN---KIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHH
Confidence 444444322 222 234455667777775543
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.65 E-value=1.2e+02 Score=31.58 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.3
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 008671 501 CETLLASSADQVAEIHKLQAMVQDLTD 527 (557)
Q Consensus 501 ~~~l~~~~~~~~~~i~~l~~~~~~l~~ 527 (557)
...|..+|+.-|.+-+.|.+++..|+-
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 456778899999999999999888874
No 173
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.41 E-value=69 Score=32.32 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc------cccccC-------hhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 324 KGLHDGRIKVLQQLYNLQNTLKSV------KCLSSS-------KAFLSVK--NQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (557)
Q Consensus 324 e~l~~e~~~l~~e~~~Lk~~l~d~------~~I~~S-------~~Yk~L~--~Q~~~lkaeld~~R~l~ekLQ~er~~~~ 388 (557)
++.++++.....-++.+|+=+..+ +.|+.- .-.+.|+ -.|.+++..+++++.-++.+|.++..++
T Consensus 76 ~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~ 155 (290)
T COG4026 76 EKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELL 155 (290)
T ss_pred HHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667888888888876633 333211 1223333 2345688889999998999999999998
Q ss_pred HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 389 rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
... +- +.+|..++.-+.+. .+-+.++||..+.++-.++..|+.+|.+-
T Consensus 156 ~el-ee-le~e~ee~~erlk~-le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 156 KEL-EE-LEAEYEEVQERLKR-LEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHH-HH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 664 22 23455566666443 37888999999999999999999999883
No 174
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=73.39 E-value=1.3e+02 Score=31.83 Aligned_cols=59 Identities=34% Similarity=0.340 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLA 266 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~ 266 (557)
++..++.+++..+..+.-+...+..+...++..+. +...+.+.||.++-+|.+.++.+-
T Consensus 33 ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 33 ELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777666666554444 455677888888888888888763
No 175
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.38 E-value=88 Score=29.92 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 008671 319 QLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA-----W 389 (557)
Q Consensus 319 Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~-----r 389 (557)
.-.++++++-.+..+..++..++..++.- +..+ --.|-+|+-....+...+++--.++.+|...-...+ .
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~-~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH-LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999888733 3333 457999999999988888888888777765543332 1
Q ss_pred HHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 390 RETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 390 q~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
+++-.++..+.. ..+..+......+..+...+.++..+++.++.....-....|
T Consensus 83 keKl~~~~~~~~-~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 83 KEKLHFLSEELE-RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223333333432 233334445677888888888888888888888777433333
No 176
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=73.08 E-value=1.9e+02 Score=33.76 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=82.5
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~ 491 (557)
+..+...-.++.++.-+++.-.-++..+..... ..+.+|+.-|.+|++ .|..|.+|+++.-..+..+--+++.=+
T Consensus 316 e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s--~~v~e~qtti~~L~~---lL~~Eqqr~~~~ed~lk~l~~eLqkks 390 (786)
T PF05483_consen 316 EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS--FVVTELQTTICNLKE---LLTTEQQRLKKNEDQLKILTMELQKKS 390 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345555666777777777665555555554444 678888888888875 566777777766666666665555444
Q ss_pred HHHH-------HhhhhhHHHHhhhhHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHccC
Q 008671 492 NVLE-------RKVKECETLLASSADQ---VAEIHKLQAMVQDLTDSNLELKLILDMYRRE 542 (557)
Q Consensus 492 ~~l~-------~k~~e~~~l~~~~~~~---~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e 542 (557)
+-|+ .|..+++.|..-++.. ..+-+.+....+.|+..+++|..+|-.-.++
T Consensus 391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~eke 451 (786)
T PF05483_consen 391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKE 451 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4443 3334555665555554 3455667777889999999999998766554
No 177
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=72.73 E-value=83 Score=29.39 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.|..|..+....+..+.++.+.+-.........+..+..++..|+++|+.+...+..+..++
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888888899999988888888777777777777777777776666666665555
No 178
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.72 E-value=57 Score=27.05 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~ 391 (557)
..+++|......+...++.||++.. -|+.+...+..++..++...++|+.+++++..++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~e------------eLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENE------------ELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888643 4666666667778888888888888888887764
No 179
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.68 E-value=46 Score=33.05 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 008671 450 AEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN 529 (557)
Q Consensus 450 ~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~ 529 (557)
.|.+.=|+..-.+|-+|++++ |++.+.+......+..+...+..|+.|++....-+.....++.-|+..+-.|....
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql---~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El 96 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQL---RELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAEL 96 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHH
Confidence 344444455555555555554 55555555555555556666666666655555555555556666666666666666
Q ss_pred HHHHHHHHHH
Q 008671 530 LELKLILDMY 539 (557)
Q Consensus 530 ~eL~l~ldmy 539 (557)
.+|+--+...
T Consensus 97 ~~Lr~~l~~~ 106 (202)
T PF06818_consen 97 AELREELACA 106 (202)
T ss_pred HHHHHHHHhh
Confidence 6776666665
No 180
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.62 E-value=45 Score=33.80 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADV-LSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~-~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
.-.++.+..++.+++.++..|+.++.....+..++.-+=.++ ..|...++. .+.-...+....+..|+..+..
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~------d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVEL------DLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHhhhc
Confidence 458899999999999999999999988877777766543332 222222221 1111233456667777777765
Q ss_pred HhhhHH-HHHHHHHHHccCCCCccc
Q 008671 525 LTDSNL-ELKLILDMYRRESTDSRF 548 (557)
Q Consensus 525 l~~~~~-eL~l~ldmy~~e~~d~rd 548 (557)
..-+-. -+..+++.|.-|....|.
T Consensus 143 ~dv~~~ek~r~vlea~~~E~~yg~~ 167 (251)
T PF11932_consen 143 ADVSLAEKFRRVLEAYQIEMEYGRT 167 (251)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 554444 478888888776655554
No 181
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=70.96 E-value=72 Score=27.92 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=65.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 008671 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA-LDIHILRADVLSLTNVL 494 (557)
Q Consensus 416 ~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~-~e~~~lr~e~~sl~~~l 494 (557)
..|...+..-|.....|..+++.-..++. ..-.|-=.||.-||++-..++-|..-|+-.. .-..--...+++|..+|
T Consensus 2 ~~Lr~~v~~er~~~~~L~~ELEeER~AaA--sAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l 79 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALYAELEEERSAAA--SAASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDIL 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555666667778888888888333333 4556777899999999999999999995544 44455566788899999
Q ss_pred HHhhhhhHHHHh
Q 008671 495 ERKVKECETLLA 506 (557)
Q Consensus 495 ~~k~~e~~~l~~ 506 (557)
-++..++..|..
T Consensus 80 ~~rE~e~~~Le~ 91 (94)
T PF04576_consen 80 YKREKEIQSLEA 91 (94)
T ss_pred HHHHHHHHHHHh
Confidence 988888776654
No 182
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=70.62 E-value=1.2e+02 Score=30.20 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA--WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~--rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere 430 (557)
...|..|+++|+...+..+..+.-+.+.+.=-+++. |+. |+ +...-. +==..-+++|++.|.-|.
T Consensus 63 e~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~-EL------~~Y~~~------sLR~~S~~kL~~tr~~Y~ 129 (201)
T PF11172_consen 63 EDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQ-EL------DQYSNA------SLRRASEQKLAETRRRYA 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHcCH------HHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999988888887 442 33 111111 122344678888999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHH
Q 008671 431 RIEMRLEEASREPGRKEIIAEFRA 454 (557)
Q Consensus 431 ~L~~e~eqa~~~~~~k~i~~Emr~ 454 (557)
.|..-+..+-..-. |+..-||-
T Consensus 130 ~L~~aM~~Ae~km~--PVL~~~~D 151 (201)
T PF11172_consen 130 QLIKAMRRAESKMQ--PVLAAFRD 151 (201)
T ss_pred HHHHHHHHHHHhcC--hHHHHHHH
Confidence 99888877666655 66555543
No 183
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.34 E-value=1.6e+02 Score=31.51 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSV 347 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~ 347 (557)
.++..+..+...+..++..|+..+...
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~~~~~ 107 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAEADSQ 107 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 478888888888888888887777743
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.74 E-value=1.6e+02 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=16.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
..+..+..-+-.++.-++.|..++.+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556667777777776666
No 185
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.20 E-value=34 Score=27.55 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 211 ~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
.++..++.+++-+..+..+++. .+.++.+|..+++.+..+++..+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888888888 56666666666666665555544
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.76 E-value=1e+02 Score=29.51 Aligned_cols=57 Identities=23% Similarity=0.455 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
++......+++.-.+-+.+.-.+......... +......+....+...++..++..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333332222221 2333333344444444444444443
No 187
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=68.73 E-value=29 Score=28.92 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQL-----SKYK---EAALDIHILRADVLSLTNVLERKVKECETLL 505 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev-----~R~k---ea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~ 505 (557)
...+++.+...|...+....+++ .+|+ .|+.+|..++..+..+...|..-...+..+.
T Consensus 20 s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 20 SIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888888888888887 4454 4888999999998888887776665555543
No 188
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.21 E-value=1.3e+02 Score=29.94 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 008671 356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435 (557)
Q Consensus 356 Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e 435 (557)
+...+..+..+..+.|++.+.+..+...-..+.++- |-+ | +..+-.+..-..+...+.+....+.+-..-|+.|..-
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry-ek~-K-~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY-EKQ-K-EVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH-HHH-H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666655555555544331 211 1 0011111111111233333333333333333333333
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhh
Q 008671 436 LEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSA 509 (557)
Q Consensus 436 ~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~ 509 (557)
-++-+ ...|.|+-.+.++.+.++..|++.|.|- .-.++||...|+.|+.|+.+|..=|-
T Consensus 141 AeekL-----~~ANeei~~v~~~~~~e~~aLqa~lkk~----------e~~~~SLe~~LeQK~kEn~ELtkICD 199 (207)
T PF05010_consen 141 AEEKL-----EKANEEIAQVRSKHQAELLALQASLKKE----------EMKVQSLEESLEQKTKENEELTKICD 199 (207)
T ss_pred HHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 3577788888888888888888877432 45567888888999988887765553
No 189
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=68.13 E-value=59 Score=30.13 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhc--ccCCchhhhhccccHHHHHHHHHHHHHHHHHhH-------HHHHH
Q 008671 159 GIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD--LQDGGSKQKASSNLQSEVKNLRLALMDLHLKHK-------SLTRE 229 (557)
Q Consensus 159 R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~--~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk-------~ls~e 229 (557)
+....-..|+.||.++..+.. =+..|... |-+...++..+.-+-.|..+|..+-.....+.. .+..+
T Consensus 6 ~~~~~eali~~lFa~VSalKa----AY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~ 81 (131)
T PF04859_consen 6 RAAAMEALIAKLFATVSALKA----AYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAE 81 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc
Confidence 344556677777777765443 11222222 222223344555556666666655444433332 34566
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 230 ~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
++.++..+...++-++.|+.++..-..++...+.+|+.+.
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888888888888887765
No 190
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.12 E-value=1.4e+02 Score=30.18 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
.|..|+.|...++..++++...+..++.+...+-.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666666666555555
No 191
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.62 E-value=90 Score=32.94 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+.+|...|.|..+=--+=+...-.|-.+...+.-++..||.++.+. ...|-.++..|..-..++++.+..+..|+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~-----eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL-----EETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778777777777666667777777777777888888888777755 22344444444444444555555555555
Q ss_pred HHHHHHHHH
Q 008671 382 VEKDNLAWR 390 (557)
Q Consensus 382 ~er~~~~rq 390 (557)
.+++.++-+
T Consensus 154 ~e~~~Lre~ 162 (302)
T PF09738_consen 154 EELDELREQ 162 (302)
T ss_pred HHHHHHHHH
Confidence 555555433
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.58 E-value=1.2e+02 Score=33.57 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc---cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSV---KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK 397 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~---~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k 397 (557)
.+|+..++....++.+...|+.+..|. ..|. ..--+.++..+..+..++...|++-..|....+.+..+..+..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~-e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~-- 423 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIV-ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE-- 423 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 456666777777788888888777766 2333 3455667777777888888888888888888887776654442
Q ss_pred hchHHHHHhhhhhhhhHHHHHhHHHHHHH
Q 008671 398 IDLVDVFRRSSAVTDSKIADLGIEIQKQI 426 (557)
Q Consensus 398 ~E~~e~~~~~~~~~~~~v~~lE~~Laqvr 426 (557)
|...-+...+ +..|.+|+.+|.-++
T Consensus 424 -e~~~~~~~s~---d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 424 -EREKEALGSK---DEKITDLQEQLRDLM 448 (493)
T ss_pred -HHHHHHHHHH---HHHHHHHHHHHHhHh
Confidence 3323333333 678888888886554
No 193
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.32 E-value=2.7e+02 Score=32.81 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 233 RQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 233 ~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+.++......-.+-|..+|..+..++..++.++...+.+
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567778889999999999999999999888855
No 194
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.31 E-value=1.6e+02 Score=29.98 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=13.5
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~e 437 (557)
.++..++..+..++...+.++.+++
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~ 87 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIE 87 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544443
No 195
>PRK11519 tyrosine kinase; Provisional
Probab=66.27 E-value=2.7e+02 Score=32.77 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
++....+.-+.=|+.+|..+..+|+.++++|...+.+
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778889999999999999999999888754
No 196
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.20 E-value=41 Score=35.56 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008671 359 VKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 359 L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
|+.++..+..+.+.|..-+.+++
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 197
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.07 E-value=3.4e+02 Score=33.84 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHH---HHHHH
Q 008671 236 IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMES---VHKEL 312 (557)
Q Consensus 236 ~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~---~leE~ 312 (557)
.......+.+.++..++++-.++..+++++++++... . +. .++.+.+.- . ++ +....+ ++.+.
T Consensus 59 ~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~-----~--~~----~~~~s~~~L-e-q~-l~~~~~~L~~~q~~ 124 (1109)
T PRK10929 59 ERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP-----R--SV----PPNMSTDAL-E-QE-ILQVSSQLLEKSRQ 124 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc-----c--cc----cccCCHHHH-H-HH-HHHHHHHHHHHHHH
Confidence 3344778888899999999999999998887654221 0 00 111111100 0 00 111222 22222
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccc---ccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLH----DGRIKVLQQLYNLQNTLKS---VKCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~----~e~~~l~~e~~~Lk~~l~d---~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ 377 (557)
....++|+.|+-.-. +.-....+.++.+...+.. ..--.+......|+.+...++++++..+.+.
T Consensus 125 l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l 196 (1109)
T PRK10929 125 AQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQ 196 (1109)
T ss_pred HHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443332222 1113344444444444432 2222335556777777777888887777763
No 198
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.00 E-value=1.8e+02 Score=31.85 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E 399 (557)
+.||.++++.+..|...++.|+.++. -++.-..+.||-||.-+-+-+-.++ |
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~~~-------------------------~e~~~~~~~LqEEr~R~erLEeqlN---d 269 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQYQ-------------------------REYQFILEALQEERYRYERLEEQLN---D 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHhHHHHHHHHHHHH---H
Confidence 34555555556666666666555422 1122334446777766655542233 6
Q ss_pred hHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHH
Q 008671 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQ 467 (557)
Q Consensus 400 ~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk 467 (557)
.-|+++.-+..+..+++.+|.+++=.- -+-.++|...++++|++|..|+
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs-------------------~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQS-------------------YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHH
Confidence 666666655555555555555442211 2456788889999999999999
No 199
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.69 E-value=3.2e+02 Score=33.08 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHH
Q 008671 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQ 469 (557)
Q Consensus 423 aqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~e 469 (557)
..+.+++.+...+..+-+..+= +..+.|++-|...+++|..+|...
T Consensus 1109 ~~~~kdK~e~er~~rE~n~s~i-~~~V~e~krL~~~~~k~~e~L~k~ 1154 (1189)
T KOG1265|consen 1109 DKVIKDKAERERRKRELNSSNI-KEFVEERKRLAEKQSKRQEQLVKK 1154 (1189)
T ss_pred ccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444322222 578889999999999998888654
No 200
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.65 E-value=65 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.8
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhhh
Q 008671 154 EDRETGIPRTKNIVSNILAAVDNLW 178 (557)
Q Consensus 154 ~~L~~R~~~tk~~l~~l~~~~d~~~ 178 (557)
++|..|+..+-.+|.-|..-|+-+.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666565433
No 201
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.51 E-value=1.1e+02 Score=27.48 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=43.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 008671 457 SSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN 529 (557)
Q Consensus 457 sSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~ 529 (557)
+++++....|++.+..+|..+.++.+=|.++.+....|.. +...+..|+++--+.|.++...+..=+...
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~---q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA---QNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999998877775554443332 233445555555555555555555433333
No 202
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=64.43 E-value=2.2e+02 Score=31.06 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E 399 (557)
+.||++..+-...|.+-.+.||..++ ..|.=.++.||-||=-+-|-+--++ +
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~k-------------------------rdy~fi~etLQEERyR~erLEEqLN---d 317 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIK-------------------------RDYKFIAETLQEERYRYERLEEQLN---D 317 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHh---H
Confidence 44555555555555555555555433 1233344557777766656542233 7
Q ss_pred hHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHH
Q 008671 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471 (557)
Q Consensus 400 ~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~ 471 (557)
+.|+++.-++++..+++-+|...+ -+.++| .+++.+-++|+|+||.-|+.+.+
T Consensus 318 lteLqQnEi~nLKqElasmeerva----------------YQsyER---aRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 318 LTELQQNEIANLKQELASMEERVA----------------YQSYER---ARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887777766666666655543 233333 45666778888988877766553
No 203
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.37 E-value=3.5e+02 Score=33.35 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKD 385 (557)
Q Consensus 307 ~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~ 385 (557)
++..-.+.--++...++...+.+.-...+++..+--.++.- .-+.+-+.|-.++.+..++++-+...+..++..+..-+
T Consensus 241 ~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~ 320 (1141)
T KOG0018|consen 241 AEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYR 320 (1141)
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHH
Confidence 33333333334444444444444444444444443333322 12222345555566666655555555554322222222
Q ss_pred HHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 386 NLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 386 ~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
.+ .+.|..+++.+.-|-..+++..-+.+...+..|
T Consensus 321 ~~------------------------~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg 355 (1141)
T KOG0018|consen 321 AL------------------------KETIERLEKELKAVEGAKEEFEKEIEERSQERG 355 (1141)
T ss_pred hh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 245555666666666666666666666555444
No 204
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.19 E-value=86 Score=31.84 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~ 434 (557)
.|+....|...++.+++++|-.--+|| +....++.+++-.. .+...|+..++++..+-+-|++
T Consensus 180 ~~k~~~~qv~~in~qlErLRL~krrlQ--------------l~g~Ld~~~q~~~~---ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 180 VDKMVEQQVRVINSQLERLRLEKRRLQ--------------LNGQLDDEFQQHYV---AEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hcccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 677788888889888888886622222 11233444455553 6888899999999999999999
Q ss_pred HHHH
Q 008671 435 RLEE 438 (557)
Q Consensus 435 e~eq 438 (557)
+|+-
T Consensus 243 e~~r 246 (289)
T COG4985 243 ELER 246 (289)
T ss_pred hhhh
Confidence 9987
No 205
>PRK11519 tyrosine kinase; Provisional
Probab=64.07 E-value=2.3e+02 Score=33.44 Aligned_cols=115 Identities=8% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 365 KSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 365 ~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
.++.++.+++..++..+..-..|+.+. -.. +... ..+... +.+..++.++.++......|...+ .+
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~~-~~v---d~~~-ea~~~l---~~~~~l~~ql~~l~~~~~~l~~~y------~~ 336 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQDK-DSV---DLPL-EAKAVL---DSMVNIDAQLNELTFKEAEISKLY------TK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC---CchH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh------cc
Confidence 355555555555555555555555442 111 1110 011111 345555555555544444443221 11
Q ss_pred chhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008671 445 RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNV 493 (557)
Q Consensus 445 ~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~ 493 (557)
.-|.+..++.-..+|+.++..+++++..+-+.+.++..|..+++..+.+
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~l 385 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQV 385 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 2455666666667788888888888877777777777777776655443
No 206
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.71 E-value=2.3e+02 Score=32.09 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=58.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK----YKEAALDIHILRADVL 488 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R----~kea~~e~~~lr~e~~ 488 (557)
.-+.+|.++-+++|.=-+.|.-+..++++.++ +|+-|-+++-. .|.-..+..-+.+-+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~E-----------------e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQE-----------------ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777666666554433 34444444311 1222333333333333
Q ss_pred hHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 008671 489 SLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTD 527 (557)
Q Consensus 489 sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~ 527 (557)
-.+..-..-+.|.+++.||+|+-+....+....++.|+-
T Consensus 265 ~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 265 AYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444445678899999999999999999888888764
No 207
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.30 E-value=2e+02 Score=29.78 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+++++++|.+..+-.++.+..|+ .+...+-..+.+.+-++.-+.--. -.+|-.---|+..|.-+++.++.. -|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq---~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa~L~rqlq~lk~~---qq 137 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQ---QQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIANLVRQLQQLKDS---QQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHH---HH
Confidence 77888888888888887765443 344444444444444444331111 134544444555555555555555 44
Q ss_pred HHHHHHH
Q 008671 382 VEKDNLA 388 (557)
Q Consensus 382 ~er~~~~ 388 (557)
.|.+.+-
T Consensus 138 dEldel~ 144 (258)
T PF15397_consen 138 DELDELN 144 (258)
T ss_pred HHHHHHH
Confidence 5554443
No 208
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.14 E-value=54 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=33.2
Q ss_pred HHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 008671 173 AVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQS 232 (557)
Q Consensus 173 ~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~ 232 (557)
+-|+-..|++++-..+. +|..||..|+...+.|+++.+.+..+-.+
T Consensus 84 aRDrKKaRm~eme~~i~--------------dL~een~~L~~en~~Lr~~n~~L~~~n~e 129 (292)
T KOG4005|consen 84 ARDRKKARMEEMEYEIK--------------DLTEENEILQNENDSLRAINESLLAKNHE 129 (292)
T ss_pred hhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33555666666666665 57888888888888888888887776666
No 209
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.90 E-value=23 Score=37.47 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHHhccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 008671 454 ALVSSFPEDMSAMQRQLSKYKE----------AALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQ 523 (557)
Q Consensus 454 ~LisSlq~~~~~Lk~ev~R~ke----------a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~ 523 (557)
.|+..++.+...++.|...|.. ...++..+..++..+..--.+...|++.|.........+|..++....
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544411 123344455555555544455555666666666666666666666666
Q ss_pred HHhhhHHHHHHHHHHHc
Q 008671 524 DLTDSNLELKLILDMYR 540 (557)
Q Consensus 524 ~l~~~~~eL~l~ldmy~ 540 (557)
.|.+.+.+.--....|.
T Consensus 89 ~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 89 ELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66665555444444333
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=61.80 E-value=3.8e+02 Score=32.91 Aligned_cols=213 Identities=17% Similarity=0.164 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALF---------------EKLQVE 383 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~---------------ekLQ~e 383 (557)
+.+|++...|...|..++.-|.|.|..- ..++-+.+ -+...+.+..+++.+|..+ +.|-.-
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ---EKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVL 231 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh---ccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHH
Confidence 5667777888888999999999988732 22221111 1111122333333333321 111111
Q ss_pred H--HHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHH-HHHHHhcc
Q 008671 384 K--DNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAE-FRALVSSF 459 (557)
Q Consensus 384 r--~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~E-mr~LisSl 459 (557)
| +-.++..+++ +|.+..+++ +.+.++.-||.+-+=+.+.--+|+.+|-.+-++..+ +|..-| .=.=|..|
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 232 KEENMLLKDDIQF-LKAELIEVA-----ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred HHHhHHHHHHHHH-HHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 1 1111221222 233332211 124566666666666666666777777666666655 443222 22224444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-------------hhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 008671 460 PEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV-------------KECETLLASSADQVAEIHKLQAMVQDLT 526 (557)
Q Consensus 460 q~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~-------------~e~~~l~~~~~~~~~~i~~l~~~~~~l~ 526 (557)
|.-...+..++..+--.-..-.-|+.++..|...|+.-+ .-++.+.+|+..-+.+| ++.++--+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 382 (977)
T PLN02939 306 QDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI---HSYIQLYQ 382 (977)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHH
Confidence 444444444444432222222333444444333333221 11233444444444443 45666666
Q ss_pred hhHHHHHHHHHHHccCCC
Q 008671 527 DSNLELKLILDMYRREST 544 (557)
Q Consensus 527 ~~~~eL~l~ldmy~~e~~ 544 (557)
++-.|++-.|+-++.|+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 383 ESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 666777777766666554
No 211
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.16 E-value=3.3e+02 Score=32.01 Aligned_cols=177 Identities=20% Similarity=0.283 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh-
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ-VEKDNLAWRETELNMK- 397 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ-~er~~~~rq~~E~~~k- 397 (557)
.||...++.+..+.+++...-..++.. ++|.++.. -|.++...++..+-++..+-..|- +-|.-|.-+ =+|+-
T Consensus 380 ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~--~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiq--GL~Ark 455 (739)
T PF07111_consen 380 AELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ--WLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQ--GLMARK 455 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhH--HHHHHH
Confidence 345555566666666666666666655 56654443 488888888888888877633332 111111111 01100
Q ss_pred hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHhccHHHHHHHHHHHHHH--
Q 008671 398 IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--KEIIAEFRALVSSFPEDMSAMQRQLSKY-- 473 (557)
Q Consensus 398 ~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~--k~i~~Emr~LisSlq~~~~~Lk~ev~R~-- 473 (557)
.=+..+......-+-..+.+|...|.+||.|||-|-.++.....-..+ +.+-.++.+=.-.|.....+|+..+..+
T Consensus 456 ~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe 535 (739)
T PF07111_consen 456 LALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQE 535 (739)
T ss_pred HHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122222221123567899999999999999999998763333322 3444455555555566666666665444
Q ss_pred ----------------HHHHHHHHHHHHHHHhHH----HHHHHhhhhh
Q 008671 474 ----------------KEAALDIHILRADVLSLT----NVLERKVKEC 501 (557)
Q Consensus 474 ----------------kea~~e~~~lr~e~~sl~----~~l~~k~~e~ 501 (557)
.+...+...+|.++..-. .+|..|+.|+
T Consensus 536 ~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 536 SLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666665544 2444454443
No 212
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.13 E-value=1.5e+02 Score=32.03 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=74.4
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHH---
Q 008671 349 CLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL---AWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEI--- 422 (557)
Q Consensus 349 ~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~---~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~L--- 422 (557)
|-+--.+|.-|+.|..+++.-+.+-|+-..||..+-.+. .|++ +. ++++- -++...+ ..+|..+...+
T Consensus 17 yqklaqeysklraqakvlke~viee~gk~~kl~eelk~k~a~irri-ea--endsl-~frndql--~rrvenfqfe~pt~ 90 (637)
T KOG4421|consen 17 YQKLAQEYSKLRAQAKVLKEAVIEEQGKEAKLREELKQKAASIRRI-EA--ENDSL-GFRNDQL--ERRVENFQFEIPTH 90 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HH--hcccc-ccchHHH--HHHHHHhccCCCCC
Confidence 333345777788888887777777776666665554333 3442 32 12321 1222232 45555544333
Q ss_pred -------------------------HHHHHHHHHHHHHHHH------HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHH
Q 008671 423 -------------------------QKQIDEKNRIEMRLEE------ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471 (557)
Q Consensus 423 -------------------------aqvr~ere~L~~e~eq------a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~ 471 (557)
+++-..-+.|+.+..| ...+|+ .+..-||-.|.+-+-++|.-|.-++.
T Consensus 91 ~aa~k~~~~k~~~~~tqsdsaaaaaarid~~ee~l~~~~aq~erlvgeiaene-rqhavemaelsekia~emr~lede~~ 169 (637)
T KOG4421|consen 91 EAAKKKDKDKGGRRGTQSDSAAAAAARIDAAEEALIFEEAQKERLVGEIAENE-RQHAVEMAELSEKIADEMRDLEDETE 169 (637)
T ss_pred ccccccccccCCCCCCCCCcccccccccchHHHHHHHHHHHhhHHHHHHHhhh-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777776 356666 46667899999999999999999998
Q ss_pred HH
Q 008671 472 KY 473 (557)
Q Consensus 472 R~ 473 (557)
|.
T Consensus 170 r~ 171 (637)
T KOG4421|consen 170 RI 171 (637)
T ss_pred HH
Confidence 88
No 213
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.99 E-value=1.5e+02 Score=32.06 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 008671 426 IDEKNRIEMRLEEASREPGR--KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECET 503 (557)
Q Consensus 426 r~ere~L~~e~eqa~~~~~~--k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~ 503 (557)
+..-+-|..++..++..-+. +-+|..|.+|+.-+..-...|..--.+|+++...+..+-.++..+..-|+.--.++++
T Consensus 240 ~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 240 KSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443333332 4566666666655555555555555555665555555555555555555544333332
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008671 504 LLASSADQVAEIHKLQAMVQDLTDSNLELKL 534 (557)
Q Consensus 504 l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l 534 (557)
-..+..+ .+=+-.+|.-+.+|+.+-++|-+
T Consensus 320 rg~~mtD-~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 320 RGSSMTD-GSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred hcCCCCC-CCHHHHHHHHHHHHHHHHHHhhh
Confidence 2222211 22233455566677776666544
No 214
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=60.60 E-value=3.7e+02 Score=32.44 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 008671 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (557)
Q Consensus 361 ~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~ 440 (557)
.++..+...+|.+-.+++.+++...+.-++ ++.+ |. . .+++-+|..+++|..++++..
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~q-i~~l---E~-----------g-------~~~a~lr~~~~slk~~l~e~a 831 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQ-IAQL---EG-----------G-------GTVAELRQRRESLKEDLEEKA 831 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hc-----------C-------ChHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777666666 3554 43 1 345667778888888887743
Q ss_pred cCCCchhHHHHHHHHHhccHHHHHHHHHH
Q 008671 441 REPGRKEIIAEFRALVSSFPEDMSAMQRQ 469 (557)
Q Consensus 441 ~~~~~k~i~~Emr~LisSlq~~~~~Lk~e 469 (557)
.-|..++..+.-+.++|...+-.
T Consensus 832 ------r~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 832 ------RKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34778888888888888777643
No 215
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.28 E-value=3.4e+02 Score=31.87 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------------------cccccChhHHHHHHHHH
Q 008671 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--------------------KCLSSSKAFLSVKNQLE 364 (557)
Q Consensus 305 L~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--------------------~~I~~S~~Yk~L~~Q~~ 364 (557)
+...+...+..+.+-+.+++.|.+.+..+..++..++.++.-- ++..--..+++|..-..
T Consensus 518 ~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~ 597 (786)
T PF05483_consen 518 QQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCN 597 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666677777777777777777777777777776655411 12222336677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 365 KSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 365 ~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
.++.+++....-.+.||.+-.++-.+. -. |. .+.. +++-.|..|+..+..+..-.++..-.+.
T Consensus 598 ~LrKqvEnk~K~ieeLqqeNk~LKKk~-~a----E~----kq~~-~~eikVn~L~~E~e~~kk~~eE~~~~~~------- 660 (786)
T PF05483_consen 598 NLRKQVENKNKNIEELQQENKALKKKI-TA----ES----KQSN-VYEIKVNKLQEELENLKKKHEEETDKYQ------- 660 (786)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HH----HH----HHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH-------
Confidence 788888888888888888888877773 33 43 2222 1255565555555544443332221111
Q ss_pred chhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 445 RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRAD 486 (557)
Q Consensus 445 ~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e 486 (557)
.=|.+..--=.-|-+||.+.|-++.|+.++..+
T Consensus 661 ---------keie~K~~~e~~L~~EveK~k~~a~EAvK~q~E 693 (786)
T PF05483_consen 661 ---------KEIESKSISEEELLGEVEKAKLTADEAVKLQEE 693 (786)
T ss_pred ---------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 112222222256889999999999999998776
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.26 E-value=1.1e+02 Score=28.92 Aligned_cols=91 Identities=31% Similarity=0.392 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
..+..++..|+..+..|....+.+..++..+....+. .+|...++.+..++.....||..|+. |.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~------~~---- 139 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRS------GS---- 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHh------CC----
Confidence 3556677788888888888888888887775544432 56777777777778888888877762 10
Q ss_pred cCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHH
Q 008671 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (557)
Q Consensus 283 ~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl 320 (557)
..++ + .+...+...+..+.....+|.
T Consensus 140 -----~~vs---~----ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 140 -----KPVS---P----EEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred -----CCCC---H----HHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1 135667777877777777764
No 217
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.15 E-value=1.3e+02 Score=27.01 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
.+..-+..|+.-+...-.-+..+..+-..+...+..+++........+.++++.+..+++
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666666666666666666666655
No 218
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.15 E-value=55 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.281 Sum_probs=42.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 008671 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (557)
Q Consensus 416 ~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~ke 475 (557)
.+||.++++.....--|..++++-...+.. ..-..+.++-..+|..+|.+||.+-.-|.+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666677777775555554 445667788888999999999999877754
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.91 E-value=1.1e+02 Score=35.31 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh---hhhHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 008671 451 EFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV---KECETLLASSADQVAEIHKLQAMVQDLTD 527 (557)
Q Consensus 451 Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~---~e~~~l~~~~~~~~~~i~~l~~~~~~l~~ 527 (557)
.....+..|..+|..|+.++.++| .+|.+|+.++.+++.-..-+. .|+..+..+...--.++.+-+..++.|+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777776665 556666666666655444222 33333333344333444444444444443
No 220
>PF13514 AAA_27: AAA domain
Probab=59.62 E-value=4.3e+02 Score=32.83 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hchH--HHHHhhhhhhhhHHHHHhHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK-------IDLV--DVFRRSSAVTDSKIADLGIEIQKQ 425 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-------~E~~--e~~~~~~~~~~~~v~~lE~~Laqv 425 (557)
.+..++.+.......+.+++..++.+......+...-.+...- .+.. =..+......-..+...+..+...
T Consensus 551 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~ 630 (1111)
T PF13514_consen 551 RLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARREAALEAAEELRAARAELEAL 630 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888888888877887777775221111000 0000 001112222235677778888888
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 008671 426 IDEKNRIEMRLEEASREPGR 445 (557)
Q Consensus 426 r~ere~L~~e~eqa~~~~~~ 445 (557)
+.....++..+..++...|.
T Consensus 631 ~~~~~~~~~~L~~~l~~~~~ 650 (1111)
T PF13514_consen 631 RARRAAARAALAAALAALGP 650 (1111)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 88888899999988877763
No 221
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.39 E-value=49 Score=32.71 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQR----QLSKYKEAALDIHILRADVLSLTNVLERKVKECETL 504 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~----ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l 504 (557)
..+.+||..|+.=.+.+...++. .-..++....+|..++.+|..|...|..|..|+..|
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44778888888877777777762 113347777889999999999999998888777655
No 222
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=2.8e+02 Score=30.99 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 008671 418 LGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 418 lE~~Laqvr~ere~L~~e~e 437 (557)
-|..++-.|+.+|+.+++.|
T Consensus 196 TeE~iqaqrr~tE~erae~E 215 (630)
T KOG0742|consen 196 TEEQIQAQRRKTEMERAEAE 215 (630)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34456667888888888888
No 223
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.83 E-value=3.4e+02 Score=31.46 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=21.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.++..+.......+.+...+..++..++.+++.+..++..+.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555554
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.79 E-value=3.9e+02 Score=32.06 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.++..+..+...+..++.+.+.|..+...+..++....+.+..|+.+++.+..++.+++.+.
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~ 722 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQ 722 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 35556666666666677777777777777666666666777777777766666665555444
No 225
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.02 E-value=34 Score=25.80 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~ 387 (557)
.|-.|++.|..|+++++.+..+.++|+++-..+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776666666666555443
No 226
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.90 E-value=1.6e+02 Score=28.88 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=24.0
Q ss_pred cccccChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 348 KCLSSSKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 348 ~~I~~S~~Yk~L~~Q~~~-lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
+-|-+|--|=++.++-.. .+..++.+...++.+......+...
T Consensus 48 EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 91 (188)
T PF03962_consen 48 EKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEK 91 (188)
T ss_pred hhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666555 5555555555555555555444444
No 227
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.94 E-value=3.9e+02 Score=31.57 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEF 452 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Em 452 (557)
+.++..++..+.+.-.+-..++-..+.+.+.+.+ -+.+.|+
T Consensus 162 eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdEr 203 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDER 203 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Confidence 4566777777777777777777777776666665 4455544
No 228
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.28 E-value=1.6e+02 Score=26.87 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ek 379 (557)
+..++.++..+......-...+..++.+...........+.+.... .-.........|+.+++.++.++..++..++.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777664422 11111225556666666666665555555433
Q ss_pred H
Q 008671 380 L 380 (557)
Q Consensus 380 L 380 (557)
.
T Consensus 85 a 85 (132)
T PF07926_consen 85 A 85 (132)
T ss_pred H
Confidence 3
No 229
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=56.07 E-value=2e+02 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=7.8
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 008671 415 IADLGIEIQKQIDEKNRIEM 434 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~ 434 (557)
+..|=-.+..||.-+-+|+.
T Consensus 143 ll~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 143 LLSLWREVVALRRQFAELRT 162 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433
No 230
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=55.82 E-value=3.6e+02 Score=30.76 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCC
Q 008671 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL 285 (557)
Q Consensus 206 ~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~ 285 (557)
...+......+..|-...+.-+-++..+.+...+++.++..=.+++-++--.+++--.++...-.+-....
T Consensus 117 E~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt--------- 187 (570)
T COG4477 117 EEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELT--------- 187 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34456677778888888888889999999999999999988888888777666654333322212211110
Q ss_pred CCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccc---cccccChhHHHHHH
Q 008671 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRI-KVLQQLYNLQNTLKSV---KCLSSSKAFLSVKN 361 (557)
Q Consensus 286 ~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~-~l~~e~~~Lk~~l~d~---~~I~~S~~Yk~L~~ 361 (557)
++|.++- ..+.-.+.++....-.+-+.+.=.|-.+.+ .+=.|+++|+.-.++. .|.... ..+.+
T Consensus 188 -----~~Gd~ie----A~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~---~~id~ 255 (570)
T COG4477 188 -----SSGDYIE----AREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEH---VNIDS 255 (570)
T ss_pred -----cCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCccc---ccHHH
Confidence 1222211 233344445555555555555555444433 4567888888876644 555522 45555
Q ss_pred HHHHHHHHHHHHHH
Q 008671 362 QLEKSKSEVFKYQA 375 (557)
Q Consensus 362 Q~~~lkaeld~~R~ 375 (557)
+++.|+.++.....
T Consensus 256 ~~~~L~~~l~~~~~ 269 (570)
T COG4477 256 RLERLKEQLVENSE 269 (570)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555443333
No 231
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.00 E-value=84 Score=32.28 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 230 ~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
+-.++..+..++.+|.+|.|++|..+++++...+|-
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555666699999999999999999999988743
No 232
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.95 E-value=2.2e+02 Score=28.07 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHH-HHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHH
Q 008671 326 LHDGRIKVLQQLY-NLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK-IDLVDV 403 (557)
Q Consensus 326 l~~e~~~l~~e~~-~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-~E~~e~ 403 (557)
+.-++-.+.+++. .||+- ..+|+.||+-++.+..++.++|.+|==|--+|..-++--+||-.= -=...+
T Consensus 35 ~m~~~g~lm~evNrrlQ~h---------l~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~v 105 (195)
T PF10226_consen 35 LMVEHGRLMKEVNRRLQQH---------LNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASV 105 (195)
T ss_pred HHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHH
Confidence 4455666666665 66665 348899999999999999999999988888777665433444100 001122
Q ss_pred HHhhhhhhhhHHHHHhHHHHHHHHHH
Q 008671 404 FRRSSAVTDSKIADLGIEIQKQIDEK 429 (557)
Q Consensus 404 ~~~~~~~~~~~v~~lE~~Laqvr~er 429 (557)
.++-...+...+.+||.....+..|-
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 23333334444445554444444443
No 233
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=54.89 E-value=2.3e+02 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHhhHHHHH
Q 008671 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELI 93 (557)
Q Consensus 62 ~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ 93 (557)
.+|+.+|+-++.-|.+|.+.|.+|..|=++|-
T Consensus 2 ~ELdakielfrsvq~t~~~Llk~i~~yq~~l~ 33 (204)
T cd07661 2 AELDAKLELFRSVQDTCLELLKIIDNYQERLC 33 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999988764
No 234
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.37 E-value=1.3e+02 Score=33.25 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQD----IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d----~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~ 280 (557)
|-.+-..+...+..|+++++.++.++...-. ....+.++++.|+.+|+++...+..+...+..+-+--.+.....+
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~V 113 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESV 113 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 4456667888899999999999999974222 246688888999999999888888888888777655555444444
Q ss_pred c
Q 008671 281 P 281 (557)
Q Consensus 281 ~ 281 (557)
|
T Consensus 114 P 114 (429)
T COG0172 114 P 114 (429)
T ss_pred C
Confidence 4
No 235
>PRK10722 hypothetical protein; Provisional
Probab=54.26 E-value=1.1e+02 Score=31.35 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=55.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHhH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hhhhhc
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHK---SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR-AERDVT 275 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk---~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~-~E~~~~ 275 (557)
.|..-...-.-|+.++-.+.++.- .++.|-.+++-......+++..|..+.-+++++|+...+||..|. .|++-+
T Consensus 132 l~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLS 210 (247)
T PRK10722 132 LNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLS 210 (247)
T ss_pred HhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455566777766666643 666677766666666789999999999999999999999999997 665543
No 236
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.23 E-value=1.1e+02 Score=32.46 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHH--------------HHHHH-hhhHH
Q 008671 466 MQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQA--------------MVQDL-TDSNL 530 (557)
Q Consensus 466 Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~--------------~~~~l-~~~~~ 530 (557)
|++=|.++.+|...+..++.++...+-.|+.|..++..+.........+...-+. .+... .+.+.
T Consensus 3 l~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~ 82 (344)
T PF12777_consen 3 LENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEE 82 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999998888776554332222211111 11111 12244
Q ss_pred HHHHHHHHHcc-----CCCCccchhhhhhh
Q 008671 531 ELKLILDMYRR-----ESTDSRFVNLLEYY 555 (557)
Q Consensus 531 eL~l~ldmy~~-----e~~d~rd~~e~~~~ 555 (557)
+|.-..-++.. .+-++.||.|||.|
T Consensus 83 ~L~~a~P~L~~A~~al~~l~k~di~Eiks~ 112 (344)
T PF12777_consen 83 ELAEAEPALEEAQEALKSLDKSDISEIKSY 112 (344)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 44444444443 56788888888877
No 237
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.34 E-value=3.3e+02 Score=29.59 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 008671 513 AEIHKLQAMVQDLTDSNLELKL 534 (557)
Q Consensus 513 ~~i~~l~~~~~~l~~~~~eL~l 534 (557)
.+....+.....|-..-+|.++
T Consensus 349 r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 349 RDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 238
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.62 E-value=2.2e+02 Score=31.29 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=38.7
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSK 472 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R 472 (557)
+.++++++..||++-+.+..+....----+++.- +.+..+.-..+.-||.+|.+|--+.-+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776655442222221 344555556677788888887777655
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.35 E-value=1.2e+02 Score=25.21 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
|+..-..|-.+...+..-+..++....-.+..+..|...++++..++...+.++
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333444333333344444444444444444444444443
No 240
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=51.84 E-value=1.7e+02 Score=31.53 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 328 DGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 328 ~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
..+..+....+.|...|.+.+++..+..|+-+-..+..+..-+..|+..
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~ 55 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREY 55 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888899999999999999999999877777766665
No 241
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.54 E-value=2.1e+02 Score=26.74 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=16.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
.+|..||..|.+.-.-.....-++.++....+
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555555555555555555555555443333
No 242
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=51.39 E-value=2e+02 Score=26.52 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=20.3
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 348 KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 348 ~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
.||.+.+.++.++.....+.+++..+-..
T Consensus 21 ~~v~~l~~~~~~~~~~~~l~~~n~~lAe~ 49 (150)
T PF07200_consen 21 AFVKSLPQVQELQQEREELLAENEELAEQ 49 (150)
T ss_dssp HHGGGGS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888887777666544
No 243
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.33 E-value=74 Score=26.91 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 008671 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~ke 475 (557)
..+||.++++......-|..++++-...+.. ..-+.++++==++|..+|.+|+.|-.-|.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776666663 333444444445588899999999877754
No 244
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=51.22 E-value=1.6e+02 Score=31.11 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRAD 486 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e 486 (557)
+.|..=|..|.+-|.++=-.|=+|+.+.|+-+.+|--.|..
T Consensus 185 k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqk 225 (302)
T PF07139_consen 185 KKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQK 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788888888888888888888888888777765
No 245
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.03 E-value=2.5e+02 Score=27.58 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 008671 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (557)
Q Consensus 355 ~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~ 434 (557)
..+..+.++..|+.-+..++.-+... +....-.+ .|+. |- .+....++.||..|...|...|.+|+..+.
T Consensus 103 aa~~A~~q~~~L~~~l~~a~~nl~~a--~~~a~~AQ-~el~---eK----~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 103 AAQQAQQQLETLKAALKAAQANLANA--EQVAEGAQ-QELA---EK----TQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777877777777775322 22222344 2443 32 455555678999999999999999987654
Q ss_pred H
Q 008671 435 R 435 (557)
Q Consensus 435 e 435 (557)
-
T Consensus 173 a 173 (188)
T PF05335_consen 173 A 173 (188)
T ss_pred H
Confidence 3
No 246
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.99 E-value=1.6e+02 Score=28.90 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=53.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIH 481 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~ 481 (557)
+....|+.+|+.-+...-.|.--+|-+....+. .....|+....+++++....|+.++.+|+++--.+-
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~ 150 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVF 150 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 566777777777777777777677765555554 568889999999999999999999999987655544
No 247
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.67 E-value=1.1e+02 Score=34.44 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (557)
Q Consensus 307 ~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk 341 (557)
..+.++......--.+++++.++...+.+++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444445555555555555555443
No 248
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.99 E-value=1.1e+02 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChh
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKA 355 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~ 355 (557)
.|+.+|..+...+.++++.+...|.|..|+..-|+
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~ 38 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPE 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCH
Confidence 57889999999999999999999999988875553
No 249
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.93 E-value=99 Score=34.54 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK 348 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~ 348 (557)
+..|-..+.+++ .+++.+..+|..|.+|++.|+....+++
T Consensus 61 lrTlva~~k~~r-------~~~~~l~~~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 61 LRTLVAEVKELR-------KRLAKLISENEALKAENERLQKREQSID 100 (472)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455655555554 4678889999999999999988766663
No 250
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.94 E-value=1.1e+02 Score=34.33 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.2
Q ss_pred cCCccc
Q 008671 276 KGAFFP 281 (557)
Q Consensus 276 ~g~~~~ 281 (557)
.|.+.|
T Consensus 131 ~~~~~~ 136 (475)
T PRK13729 131 TGEPVP 136 (475)
T ss_pred CCCCCC
Confidence 333333
No 251
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.67 E-value=2.8e+02 Score=29.96 Aligned_cols=98 Identities=19% Similarity=0.164 Sum_probs=43.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 008671 155 DRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQ 234 (557)
Q Consensus 155 ~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~ 234 (557)
.+..+...++...+.|...+...+...+.|+..+... -+.+..-=+.|-.++..+-..++....++...+
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~----------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~ 286 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT----------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQ 286 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555555555444431 001111112222333333344444444444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 235 DIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
.++.....-+.++..+|..+..+|+...
T Consensus 287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 287 EKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 252
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.40 E-value=3.7e+02 Score=28.70 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchH------------HHHHhhhhhh-------hh
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLV------------DVFRRSSAVT-------DS 413 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~------------e~~~~~~~~~-------~~ 413 (557)
+.+-.+|...+..-..+-|+|+..+|.||-...++.+...++++.+..+ .+ .+....+ ..
T Consensus 8 ~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~L-a~lL~~sre~Nk~L~~ 86 (319)
T PF09789_consen 8 SEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNL-AQLLSESREQNKKLKE 86 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhH-HHHHHHHHHHHHHHHH
Confidence 4566677777777778888888888888877777666544554221100 00 0111111 34
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-HhcCCCc--hhHHHHHHHHH---hccHHHHHHHHHHHHHH----HHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEE-ASREPGR--KEIIAEFRALV---SSFPEDMSAMQRQLSKY----KEAALDIHIL 483 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eq-a~~~~~~--k~i~~Emr~Li---sSlq~~~~~Lk~ev~R~----kea~~e~~~l 483 (557)
+|..|-+.|..+..+.-.||-.+.. .....|- .+...|--.|| ..+...+.+|+.+++-+ -|...|-...
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555556655555 2222221 12224444444 46677888888888777 3344444555
Q ss_pred HHHHHhHHHHHHHhhhhhHHHH----hhh---hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Q 008671 484 RADVLSLTNVLERKVKECETLL----ASS---ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (557)
Q Consensus 484 r~e~~sl~~~l~~k~~e~~~l~----~~~---~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~ 541 (557)
|..++-| +.|+..+. .|. -.-..|++-|+..+..++++..=++--+.=|+.
T Consensus 167 k~K~~RL-------N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 167 KCKAHRL-------NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHH-------HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 33333321 122 223567777777777777777777776766665
No 253
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=48.14 E-value=2.2e+02 Score=26.11 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=66.5
Q ss_pred HhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHH
Q 008671 405 RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDI 480 (557)
Q Consensus 405 ~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~ 480 (557)
....+.+...+.+.+..|..+...+++....+.......-....+..+..-+..|...|.+.+..|..+ .......
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~ 101 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDL 101 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444467888899999999999999988888754322214466777777888999998888888655 3344555
Q ss_pred HHHHHHHHhHHHHHHHhhhhhH
Q 008671 481 HILRADVLSLTNVLERKVKECE 502 (557)
Q Consensus 481 ~~lr~e~~sl~~~l~~k~~e~~ 502 (557)
...+.++.++-.+.+++..+..
T Consensus 102 ~ea~~~~k~~ekLker~~~~~~ 123 (146)
T PRK07720 102 TEKNIEVKKYEKMKEKKQEMFA 123 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666654433
No 254
>PLN02678 seryl-tRNA synthetase
Probab=47.76 E-value=2.3e+02 Score=31.67 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSR---QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~---~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
+..+-..++..++.|.++...++.++... .+....+..+.+.|+.++..+..++..+..++..+-+.-.+.....+|
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP 117 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVP 117 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 44455667777788888888888877642 233445666778888888888888888888877665554444444444
No 255
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=47.70 E-value=4e+02 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
..|+.+......|..+++.+.-...
T Consensus 261 ~~Ld~i~~rl~~L~~~~~~l~~~~~ 285 (388)
T PF04912_consen 261 AKLDSIERRLKSLLSELEELAEKRK 285 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3588888888888888888774433
No 256
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.86 E-value=2.7e+02 Score=31.19 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=7.4
Q ss_pred ccccHHHHHHHHHHH
Q 008671 202 SSNLQSEVKNLRLAL 216 (557)
Q Consensus 202 n~~L~~E~~~Lq~~~ 216 (557)
|..|..||.+|+..-
T Consensus 82 N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 82 NEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444555555554433
No 257
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=46.02 E-value=1.9e+02 Score=24.61 Aligned_cols=62 Identities=11% Similarity=0.319 Sum_probs=38.6
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 410 VTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 410 ~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
.+...+...+..|..+...++.+...+.... . |- ...+.-+...+..+...|..++.++...
T Consensus 9 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 9 EAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888866666544 2 42 2345555666777777777777776444
No 258
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=45.73 E-value=58 Score=27.51 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Q 008671 422 IQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY--------KEAALDIHILRADVLS 489 (557)
Q Consensus 422 Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~--------kea~~e~~~lr~e~~s 489 (557)
|-.||.|++.+-.+.... +....++.+=|++--.+|.+++.-|-.+ ...-.||..||.++++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~------k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSY------KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555444333332 3355566666777667777776666333 2356777777777654
No 259
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.69 E-value=1.3e+02 Score=29.17 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
....+...+++.|+.+|+++..+++...++...+..|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566677777777777777766666665555443
No 260
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.66 E-value=1.1e+02 Score=29.24 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
.+..||..|+..+..|+.+++.+..++.. +..++..++..++.+.-=++++|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~-------L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEK-------LRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777666666555 44444444555544444444444
No 261
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.65 E-value=7.4e+02 Score=31.41 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHH--HHHHHHH--HHHHHHHH-hHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 450 AEFRALVSSFPEDMSAMQRQLSKY--KEAALDI--HILRADVL-SLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 450 ~Emr~LisSlq~~~~~Lk~ev~R~--kea~~e~--~~lr~e~~-sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
+.|..+.-.+++.++.|+-.+.-. +....++ +.++.+++ .....+.-+...++.-+...++....|+.|+..+++
T Consensus 570 ~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~ 649 (1294)
T KOG0962|consen 570 RSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEK 649 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence 477777777777777777666333 3333333 34556666 344455556666677777788999999999999999
Q ss_pred HhhhHHHHHHHHHHHcc
Q 008671 525 LTDSNLELKLILDMYRR 541 (557)
Q Consensus 525 l~~~~~eL~l~ldmy~~ 541 (557)
.+..-.-|++--.||..
T Consensus 650 ~rk~l~~lq~~s~~Y~k 666 (1294)
T KOG0962|consen 650 ARKDLAMLQGRSALYRK 666 (1294)
T ss_pred HHhhhhhhhhHHHHHHH
Confidence 99999999999999986
No 262
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.63 E-value=94 Score=29.70 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=56.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
+.+..|.+.|+..++.|++..+.+..++..+.|....++..-.+|...+..+....-...+++...
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ 150 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEH 150 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999888888888888888888888888777766443
No 263
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.47 E-value=4.6e+02 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=20.5
Q ss_pred HhccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHH
Q 008671 456 VSSFPEDMSAMQRQLSKY--------KEAALDIHILRADVLSLT 491 (557)
Q Consensus 456 isSlq~~~~~Lk~ev~R~--------kea~~e~~~lr~e~~sl~ 491 (557)
..++.-||.-|++||.|| |.++.+...++++-.+.+
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~r 291 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHR 291 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345666677777777777 444455555555543333
No 264
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.46 E-value=5.7e+02 Score=30.05 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=77.6
Q ss_pred chhHHHHHHhhHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCchHHHHHHhhccccCCCCCCCCcchHHhHhh
Q 008671 78 YDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRE 157 (557)
Q Consensus 78 ~D~~L~~Vnr~W~QL~ddl~lL~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~FL~~Ll~~~~t~~s~d~~~~~~~e~~L~ 157 (557)
++..+.-+...|..+.+.+..+-.++|..-+ ..+.+|-.| ..++-+-..
T Consensus 5 ~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~-----------------e~d~~l~~l--------------e~e~~~~y~ 53 (660)
T KOG4302|consen 5 DSEVSLQIEATCGNLLNELQKIWDEIGESET-----------------ERDKKLLRL--------------EQECLEIYK 53 (660)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhCccHH-----------------HHHHHHHHH--------------HHHHHHHHH
Confidence 4556667777888888888888887774433 234566666 444444555
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 008671 158 TGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQS 232 (557)
Q Consensus 158 ~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~ 232 (557)
..+..+.....+|...|...+.....|+.+++..+..+........-|..+...|...+..|..+..+--.++..
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~e 128 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKE 128 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999987632222100122234444444444444444444333333333
No 265
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.94 E-value=3.2e+02 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
+++|+..+.+.+.-.+.-+..-..+..+...+...+.++.....
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999888888888888888888888887644
No 266
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.77 E-value=3.6e+02 Score=28.63 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 240 DKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
......-++.+++.+..++..++.+|...+.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788888888888888898888777744
No 267
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.64 E-value=1.8e+02 Score=24.09 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 214 ~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
..+..|...=..++..-..+...+-++++.++++..++..+...++.....+..++
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666665554
No 268
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=44.40 E-value=3.4e+02 Score=27.13 Aligned_cols=26 Identities=27% Similarity=0.343 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008671 512 VAEIHKLQAMVQDLTDSNLELKLILD 537 (557)
Q Consensus 512 ~~~i~~l~~~~~~l~~~~~eL~l~ld 537 (557)
-..+.+|...++.-...+.||--|-|
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICD 199 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICD 199 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666654
No 269
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=43.87 E-value=2.4e+02 Score=25.28 Aligned_cols=88 Identities=13% Similarity=0.210 Sum_probs=52.7
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRAD 486 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e 486 (557)
+...+...+..|..+...+......+.......-..+...-+..-+..|...|...+..|... ..+...+...+.+
T Consensus 25 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~ 104 (141)
T TIGR02473 25 AQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRE 104 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888877776632222113456667777788888888777777544 2233333333444
Q ss_pred HHhHHHHHHHhh
Q 008671 487 VLSLTNVLERKV 498 (557)
Q Consensus 487 ~~sl~~~l~~k~ 498 (557)
..++-.+.+++-
T Consensus 105 ~k~lekL~ek~~ 116 (141)
T TIGR02473 105 LKALEKLKEKKQ 116 (141)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 270
>PF15456 Uds1: Up-regulated During Septation
Probab=43.40 E-value=2.1e+02 Score=26.26 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=49.2
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHH-------Hhh-----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTREL-------QSR-----------QDIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~-------~~~-----------~d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
..+.|+.|...|...++.+..++. +-.++ ..+ .+...+.+.+...+...+|+...++.+++
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556788888888888887776665 43333 332 23455667788888888899999999998
Q ss_pred HHHHHHH
Q 008671 263 CKLAALR 269 (557)
Q Consensus 263 rKL~~l~ 269 (557)
+|+.+++
T Consensus 102 ~R~~~~~ 108 (124)
T PF15456_consen 102 NRLAEVR 108 (124)
T ss_pred HHHHHHH
Confidence 8887776
No 271
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.93 E-value=4.9e+02 Score=31.06 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=59.0
Q ss_pred HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhh---------
Q 008671 439 ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSA--------- 509 (557)
Q Consensus 439 a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~--------- 509 (557)
+-..+|-.+.+-| +-|||.-|-+|+.+| +|.......|+...+.|..+++..-.|-+.|..-.-
T Consensus 416 ~~k~~~~~~~n~E----l~sLqSlN~~Lq~ql---~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~ 488 (861)
T PF15254_consen 416 AEKTSGSQDCNLE----LFSLQSLNMSLQNQL---QESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN 488 (861)
T ss_pred hcccCCCcccchh----hHHHHHHHHHHHHHH---HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444443556666 467899999999999 444444555555555556666555555554432221
Q ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCC
Q 008671 510 --DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRES 543 (557)
Q Consensus 510 --~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~ 543 (557)
-...|+..+|-++.......+-+||-|+--.+|.
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 1245566666667777777777777766555443
No 272
>PRK14011 prefoldin subunit alpha; Provisional
Probab=42.87 E-value=1.7e+02 Score=27.55 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 306 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYN 339 (557)
Q Consensus 306 ~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~ 339 (557)
+..++++..-..+|..+|++.........+++..
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~ 116 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNK 116 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888888766665555544443
No 273
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=42.81 E-value=1.9e+02 Score=28.09 Aligned_cols=76 Identities=12% Similarity=0.270 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLT 526 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~ 526 (557)
+-...+...++.|++.+..-+..+ .....++...+..+..-...|.... ..+...+++..+.|..|+..|..++
T Consensus 103 ~~~~~~~~~i~~L~~~i~~~q~~~---~~~i~~L~~f~~~l~~D~~~l~~~~---~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 103 KDKEDLKEIIEDLQDQIQKNQDKV---QALINELNDFKDKLQKDSRNLKTDV---DELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHhcccCCHHHHHHHHHHHH
Confidence 445556666666665555555554 2333344444444433333333332 3445556677788888888888776
Q ss_pred hh
Q 008671 527 DS 528 (557)
Q Consensus 527 ~~ 528 (557)
.+
T Consensus 177 ~~ 178 (184)
T PF05791_consen 177 EE 178 (184)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.73 E-value=2.3e+02 Score=24.63 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMK-IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
+-.+.-.+...++.|+++|+.+..++...+.. .+..++..++.. ...++..+|..+..+-.+.+.+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~-lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE-LKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666677788899988885433322 255455544443 2566666666666555554443
No 275
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.66 E-value=1.9e+02 Score=23.74 Aligned_cols=56 Identities=30% Similarity=0.289 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE 260 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek 260 (557)
|...+..+...+..-+...+.+..+-....-.+..+-.++.+|+.+++.+.-+++.
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444443
No 276
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.49 E-value=2.2e+02 Score=25.11 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 207 SEVKNLRLALMDLHLKHKSLTRELQSR--QDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 207 ~E~~~Lq~~~~~L~~khk~ls~e~~~~--~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
.++..|...++....+--.+..++.++ ++-+..++-++.+++|++..+...+.-..+.++.|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555566666 66666677777777777777777777776665544
No 277
>PRK11281 hypothetical protein; Provisional
Probab=42.45 E-value=7.9e+02 Score=30.82 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=35.4
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
+--+...+++..+...+...+.+..+.++.|.++..+..++.++..++.+
T Consensus 129 ~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 129 RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666677778888888888888888888888777653
No 278
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.18 E-value=7.7e+02 Score=30.60 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~ 274 (557)
++..|...-..|..+.+.+.- .+- .+...++.+.-|+..|--+..+++..++.|.....|-+.
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~--~~~--e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~ 715 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK--RRK--EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQR 715 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555444444 111 555688888888888888888888888888877766443
No 279
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=42.17 E-value=2.7e+02 Score=26.44 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
|...++..+.-+-.|-.+-..++-+ +|+ |..++ -.++......|+++.+|||+|+-++=++
T Consensus 90 Lqd~~~~hksa~~aLas~L~~Lr~q-~e~----e~kea--------a~qL~~~~a~L~~v~~ERD~Lr~kLlqa 150 (152)
T PF15186_consen 90 LQDQAEEHKSAAWALASELKRLREQ-REM----ERKEA--------AFQLQLTQAALQEVQKERDLLRWKLLQA 150 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555544 455 43222 2567777889999999999999887653
No 280
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.06 E-value=4.3e+02 Score=27.65 Aligned_cols=184 Identities=19% Similarity=0.224 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccC
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN 284 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~ 284 (557)
...++..+-...+.||-|+-.-+.-+..+..-+.+.+.+.+.+.-..|.++..|+.+.+-+. -.+..|-.
T Consensus 7 fga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~e-----Llaa~gc~----- 76 (389)
T KOG4687|consen 7 FGAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELE-----LLAACGCD----- 76 (389)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH-----HHHhcCCC-----
Confidence 34567778888999999999999999998888888888888888888888888877776542 22322211
Q ss_pred CCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHH
Q 008671 285 LGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLE 364 (557)
Q Consensus 285 ~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~ 364 (557)
..+.++.. -.+|-+.+++.++. =.+|+.+...|..+...|+.+ +..|+.--.||.
T Consensus 77 --------a~~e~gte-rqdLaa~i~etkee-------NlkLrTd~eaL~dq~adLhgD---------~elfReTeAq~e 131 (389)
T KOG4687|consen 77 --------AKIEFGTE-RQDLAADIEETKEE-------NLKLRTDREALLDQKADLHGD---------CELFRETEAQFE 131 (389)
T ss_pred --------chhhccch-hhHHHHHHHHHHHH-------hHhhhHHHHHHHHHHHHHhch---------HHHHHHHHHHHH
Confidence 11111111 24554455444432 223444444455555554443 445666666666
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 008671 365 KSK-SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 365 ~lk-aeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~e 437 (557)
.-+ +---+ . --...+.+.|+ ++. +.-+...-.+ ..+-.+|+.+|.-+..++++|..+-.
T Consensus 132 se~~a~ase--N----aarneeelqwr-rde-----anfic~~EgL--kak~a~LafDLkamideKEELimERD 191 (389)
T KOG4687|consen 132 SEKMAGASE--N----AARNEEELQWR-RDE-----ANFICAHEGL--KAKCAGLAFDLKAMIDEKEELIMERD 191 (389)
T ss_pred HHHhccccc--c----cccchHHHHhh-HHH-----HHHHHHHHHH--HHHhhhhhhHHHHHhchHHHHHHHHH
Confidence 510 00000 0 01112223343 111 1111122222 46778899999888888888766543
No 281
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.59 E-value=4.1e+02 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 240 DKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
++.++..+..++++...=..+.+..|..+.
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555554
No 282
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=6.3e+02 Score=29.25 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 008671 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 358 ~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~e 437 (557)
+++-|+..++.++....+-+|++-.++|-+.+++.++ |+ +.-+.....+-+..-.+..++-++....-||....+
T Consensus 329 N~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~----~~-~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~ 403 (852)
T KOG4787|consen 329 NAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVEL----EA-DCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISE 403 (852)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----hh-hhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHH
Confidence 3677888899999999999999999998888886555 43 222223322334555666667777777777766655
Q ss_pred HH---hcCCCc-------hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhh
Q 008671 438 EA---SREPGR-------KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLAS 507 (557)
Q Consensus 438 qa---~~~~~~-------k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~ 507 (557)
.- ...+++ -.+..+|=.=-.+-..++.-+++|+.-.+|+--+=.- ..+.||+..|+.-++.|.=|+-|
T Consensus 404 ~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV--~~~~sL~~~LeqAsK~CRIL~~R 481 (852)
T KOG4787|consen 404 LERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDV--QKVISLATKLEQANKQCRILNER 481 (852)
T ss_pred HHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhchhHHHHHH
Confidence 41 111110 0122222222234556777777777777665433221 23567788888888888877655
Q ss_pred hh
Q 008671 508 SA 509 (557)
Q Consensus 508 ~~ 509 (557)
++
T Consensus 482 L~ 483 (852)
T KOG4787|consen 482 LN 483 (852)
T ss_pred Hh
Confidence 43
No 283
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.82 E-value=2.6e+02 Score=24.85 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD 273 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~ 273 (557)
.|.+.|.-|...+-.=+++...+..++.. .++.+..+..++|.+.+.-....+|...|..|-.
T Consensus 9 KLraQ~~vLKKaVieEQ~k~~~L~e~Lk~-------ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAKNAELKEQLKE-------KEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555665555666666666666666 8888888888888888888888888888886644
No 284
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.47 E-value=1.2e+02 Score=24.34 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=42.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH---HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eq---a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+.++..|+..+.++.++.+.+...+.. ...++. .++..=|.-...+..++..|...+..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~--eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPE--EVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C--CHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888888888877765 555555 677777777777777777776666543
No 285
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.42 E-value=1.6e+02 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLS 471 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~ 471 (557)
+..++++...+....+-+.+|+-|++
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777788877774
No 286
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.32 E-value=2.2e+02 Score=31.34 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ-D--IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~-d--~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
|..+-..++..++.|+.+.+.++.++.... + ....+..+.++|+.++..+..++..++.++..+-+.-.+.....+|
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 445566678888888888888888887622 2 2345677788888888888888888888776665554444444444
No 287
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.97 E-value=3e+02 Score=27.26 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccc-ccccccChhHHHHHHHHHHHHH
Q 008671 301 DLRDMESVHKELMDQASHQ-----------LLELKGLHDGRIKVLQQLYNLQNTLKS-VKCLSSSKAFLSVKNQLEKSKS 368 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~R-----------l~ELe~l~~e~~~l~~e~~~Lk~~l~d-~~~I~~S~~Yk~L~~Q~~~lka 368 (557)
++.+|+..+.....-+++| ..|++.|..-...-+.++.. ..-.. .++-.-..--..+..|...|+.
T Consensus 104 ELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~~v~~Dl~~ie~QV~~Le~ 181 (195)
T PF12761_consen 104 ELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE--GRSKSGKNLKSVREDLDTIEEQVDGLES 181 (195)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777764 33444444433333333322 11111 1222223455667777777777
Q ss_pred HHHHHHHHHHHHH
Q 008671 369 EVFKYQALFEKLQ 381 (557)
Q Consensus 369 eld~~R~l~ekLQ 381 (557)
.|..-+..++.|+
T Consensus 182 ~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 182 HLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHhc
Confidence 7766666655443
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.81 E-value=3.7e+02 Score=26.24 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVK 256 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~ 256 (557)
.|...|.-|+.+++..+..+..++.++.. +......+.++|+.-..
T Consensus 78 ~L~qvN~lLReQLEq~~~~N~~L~~dl~k-------lt~~~~~l~~eL~~ke~ 123 (182)
T PF15035_consen 78 ELAQVNALLREQLEQARKANEALQEDLQK-------LTQDWERLRDELEQKEA 123 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 56666777888888888877777777777 56666666666654333
No 289
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.66 E-value=1.7e+02 Score=33.51 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT-LKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~-l~d~-~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ek 379 (557)
.++++..+++...--..|..+|.. .++.....+.+..++-. +++. +......++..|++++...++.+..++..
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~--- 241 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND--- 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 678899999999999999999964 56666666666666653 3444 44454556666666665554444444444
Q ss_pred HHHHHHHHHHHH
Q 008671 380 LQVEKDNLAWRE 391 (557)
Q Consensus 380 LQ~er~~~~rq~ 391 (557)
|+.++..+..+.
T Consensus 242 l~~~~~~~~~~~ 253 (555)
T TIGR03545 242 LQNDKKQLKADL 253 (555)
T ss_pred HHHhHHHHHHHH
Confidence 777777777664
No 290
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=38.65 E-value=3.2e+02 Score=25.24 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=60.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (557)
Q Consensus 416 ~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~ 495 (557)
.+++..+.+.+..++.+...+...-.++- .. |.+=|+..-.=+..+.+++..+..+|..+.+.+..|.
T Consensus 36 ~g~~~~~~~f~~~~~~~~~~L~~vV~eh~--------q~----Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~ 103 (142)
T PF04048_consen 36 VGRAHRYQEFEELKKRIEKALQEVVNEHY--------QG----FNSSIGSYSQILSSISESQERIRELKESLQEAKSLLG 103 (142)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777776666655332222 11 2222333333345558899999999999999999999
Q ss_pred HhhhhhHHHHhhhhHHHHHHHHH
Q 008671 496 RKVKECETLLASSADQVAEIHKL 518 (557)
Q Consensus 496 ~k~~e~~~l~~~~~~~~~~i~~l 518 (557)
.+..+++.|-.++...-.-|.-|
T Consensus 104 ~~~~eL~~L~~~s~~~~~mi~iL 126 (142)
T PF04048_consen 104 CRREELKELWQRSQEYKEMIEIL 126 (142)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877764444433
No 291
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.59 E-value=5.1e+02 Score=27.50 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 360 ~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
++....++.++++++..++..+..-..|+.+. -.. ..+. ..... -..+.+|+.+++.++.++..++.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~-~~~---d~~~-~~~~~---~~~i~~L~~~l~~~~~~l~~l~~----- 235 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKN-KVF---DPKA-QSSAQ---LSLISTLEGELIRVQAQLAQLRS----- 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc---ChHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 34445566666666666555555555555441 111 1111 01111 24566666666666655554443
Q ss_pred hcCCCc-hhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 440 SREPGR-KEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 440 ~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
-.+. -|.+...+.-+.+++..+....+.+
T Consensus 236 --~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 236 --ITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred --hCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 4666666665666666655554444
No 292
>PRK00846 hypothetical protein; Provisional
Probab=38.55 E-value=1.3e+02 Score=25.35 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 225 SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 225 ~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.+...+..+.-+++=.+.-+.+|...+-..+..+.+..+++..+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555555554444
No 293
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.36 E-value=3.4e+02 Score=25.44 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=35.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRADV 487 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~-kea~~e~~~lr~e~ 487 (557)
.+...+|+.+|.-||++++.|--.++.- +.-+.|+-.+.+++.+.+.-.+.+-... .++.+.+..|..++
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~------q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKK------QEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666667777776664444321 2344455555555555555555553222 33444444444444
No 294
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.21 E-value=4.3e+02 Score=26.50 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCcc----chhhhchHHHHHHHHHH
Q 008671 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV----RDEQRDLRDMESVHKEL 312 (557)
Q Consensus 237 ~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~----~~~~k~~~eL~~~leE~ 312 (557)
......+...+...++++-.++..+++.|..++.. ...+.+.+ .+.+...- ....-.+.++...+...
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~------~~~s~~eLeq~l~~~~~~L~~~q~~l~~~ 104 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSKEIL------ANLSLEELEQRLSQEQAQLQELQEQLQQE 104 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888899999999999999999999888643 11111110 11111100 00000123333334333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ 377 (557)
.......-.-.+.++.......+.++.+...|... +...+...+..|+.+...++++++..+.++
T Consensus 105 ~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 105 NSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444566666666777777777776643 122334566677777777777777777663
No 295
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.07 E-value=3.1e+02 Score=24.95 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 452 FRALVSSFPEDMSAMQRQLSKYKEAALDIHILRA 485 (557)
Q Consensus 452 mr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~ 485 (557)
++..++.|+..+..+...+..|+.+...+..+..
T Consensus 18 l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 18 LQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555666666666666666666666665553
No 296
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=37.43 E-value=23 Score=34.31 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=2.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
.|..++.+|+...+.|..++.....+++..+.....+..++++|+-...-.++++...+
T Consensus 26 kl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~ 84 (181)
T PF09311_consen 26 KLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESR 84 (181)
T ss_dssp HHHT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccc
Confidence 67778888888888888888888888888777777778888877777766666665554
No 297
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.10 E-value=5e+02 Score=27.00 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 219 L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
|.........+++..++.+....++-+.|...++....||+.+++||..|+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666999999999999999999999999998887
No 298
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=36.99 E-value=88 Score=29.33 Aligned_cols=41 Identities=10% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhh
Q 008671 61 YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSM 101 (557)
Q Consensus 61 ~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~ 101 (557)
....+..++.-..+..+.+...-+++..|++++.+..+--+
T Consensus 58 v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~V~~~ll~~e 98 (145)
T PF13623_consen 58 VEQATENYKQQNGRSPTEQEQNQIRNQVWNQMVQNILLEQE 98 (145)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544555666777789999999999999766543
No 299
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.89 E-value=2.7e+02 Score=23.90 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH---HhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHH
Q 008671 418 LGIEIQKQIDEKNRIEMRLEE---ASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI-LRADVLSLTN 492 (557)
Q Consensus 418 lE~~Laqvr~ere~L~~e~eq---a~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~-lr~e~~sl~~ 492 (557)
|+.-+.++...-+-|..-+++ ....... ..-+.-|..--+-|-.+.-+..+.+.+|+.++.|+.. |..-++..+.
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 008671 493 VLER 496 (557)
Q Consensus 493 ~l~~ 496 (557)
+|+|
T Consensus 86 vL~r 89 (89)
T PF13747_consen 86 VLDR 89 (89)
T ss_pred HhcC
No 300
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.50 E-value=6.5e+02 Score=28.16 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHh
Q 008671 218 DLHLKHKSLTRELQS 232 (557)
Q Consensus 218 ~L~~khk~ls~e~~~ 232 (557)
.-.+.+|.|++++..
T Consensus 262 Hweet~H~yalel~t 276 (493)
T KOG0804|consen 262 HWEETGHCYALELET 276 (493)
T ss_pred HHHhhcceEEEeecc
Confidence 455677777777776
No 301
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.36 E-value=6.2e+02 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=12.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 415 IADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
......+|..++.+.+.++..+..
T Consensus 286 ~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 286 LAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 302
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=36.35 E-value=3.5e+02 Score=27.62 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=12.7
Q ss_pred cchHHhHhhhhhhHHHHHHHH
Q 008671 149 PNQMEEDRETGIPRTKNIVSN 169 (557)
Q Consensus 149 ~~~~e~~L~~R~~~tk~~l~~ 169 (557)
.+-++.+|+.|..........
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~q 179 (289)
T COG4985 159 GDPLERELQKRLLEVETLRDQ 179 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 356777888777654444333
No 303
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.98 E-value=9.7e+02 Score=30.03 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=49.9
Q ss_pred hccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-----hHHHHHHH----hhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 008671 457 SSFPEDMSAMQRQLSKY---KEAALDIHILRADVL-----SLTNVLER----KVKECETLLASSADQVAEIHKLQAMVQD 524 (557)
Q Consensus 457 sSlq~~~~~Lk~ev~R~---kea~~e~~~lr~e~~-----sl~~~l~~----k~~e~~~l~~~~~~~~~~i~~l~~~~~~ 524 (557)
..+.++|..+.-+.-+| ++.-..+..+..+.. ..+.+|+. .-.=+..|..-|..+..+...|+.--+.
T Consensus 336 ~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~Q 415 (1109)
T PRK10929 336 QQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQ 415 (1109)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777666555455 333334555543211 12233333 3333445556677888899999999999
Q ss_pred HhhhHHHHHHHHHH
Q 008671 525 LTDSNLELKLILDM 538 (557)
Q Consensus 525 l~~~~~eL~l~ldm 538 (557)
|.+.-.+|+-.++=
T Consensus 416 L~~~~~~l~~~L~~ 429 (1109)
T PRK10929 416 LEDALKEVNEATHR 429 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 304
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.91 E-value=2.2e+02 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHHH
Q 008671 479 DIHILRADVLSLTNVLERKVKECETL 504 (557)
Q Consensus 479 e~~~lr~e~~sl~~~l~~k~~e~~~l 504 (557)
++..+..++.-++...+...+|...|
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 33333333333333344444444433
No 305
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=7.4e+02 Score=28.53 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCc
Q 008671 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSH 127 (557)
Q Consensus 48 ~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (557)
..|..+.+.|-.++++++++++.+++++..-.+.+--+----.-|+.-+.-|..+++.... +...++
T Consensus 591 ~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp-------------~l~~AE 657 (741)
T KOG4460|consen 591 KLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELP-------------VLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCC-------------cchhHH
Q ss_pred hHHHHHHhhccccCCCCCCCCcchHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhc--ccCCchhhhhcccc
Q 008671 128 DAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD--LQDGGSKQKASSNL 205 (557)
Q Consensus 128 ~~FL~~Ll~~~~t~~s~d~~~~~~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~--~~~~~~~~~~n~~L 205 (557)
-.| ..++ .-+..-...-.+.+..+-..++.++.-++....++.+. . .-
T Consensus 658 rdF------------------k~El-q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~-----------l~ 707 (741)
T KOG4460|consen 658 RDF------------------KKEL-QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYI-----------LS 707 (741)
T ss_pred HHH------------------HHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-----------cc
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 008671 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237 (557)
Q Consensus 206 ~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~ 237 (557)
..+-+.+|+.++.|-.....++-+....+..+
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 306
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.90 E-value=2.7e+02 Score=23.48 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 481 HILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 481 ~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
..+|.+...+..-+..-....+.+--+++.|+.|+..++..|-.|.....-+|
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK 59 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544433322224556666677777777777777777766665554
No 307
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.81 E-value=3.3e+02 Score=25.10 Aligned_cols=83 Identities=6% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhc
Q 008671 380 LQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSS 458 (557)
Q Consensus 380 LQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisS 458 (557)
|..-.+.+-.|.-.+. |+-...++... .||..+...|.++..--..++-++.....+..+ +..+..++++|..
T Consensus 41 m~~A~~~v~kql~~vs---~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVS---ESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHH
Q 008671 459 FPEDMSAMQR 468 (557)
Q Consensus 459 lq~~~~~Lk~ 468 (557)
|...|..|+.
T Consensus 115 Le~ki~~ie~ 124 (126)
T PF07889_consen 115 LEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhc
No 308
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=34.77 E-value=9.7e+02 Score=29.66 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=28.6
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 409 AVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 409 ~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
..+.+.+..+...+.....++..+...|...+...|
T Consensus 727 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 762 (1047)
T PRK10246 727 LSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASV 762 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334677888888888888888888888888777666
No 309
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=34.76 E-value=5.6e+02 Score=26.89 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=13.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHH
Q 008671 451 EFRALVSSFPEDMSAMQRQLSKYKE 475 (557)
Q Consensus 451 Emr~LisSlq~~~~~Lk~ev~R~ke 475 (557)
.++.-+...+......+.++.||+.
T Consensus 118 ~~~~~i~~a~~~l~~a~~~~~R~~~ 142 (346)
T PRK10476 118 SANEQVERARANAKLATRTLERLEP 142 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666643
No 310
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.70 E-value=2.3e+02 Score=22.47 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAV 255 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~ 255 (557)
+..|...+..|..|.-.++.++..++..+.....+-.+-...|+...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44566666666666666666666655555555555555555555443
No 311
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=34.66 E-value=3.6e+02 Score=24.57 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 211 ~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.++..+.........+....+.+.....+...++...+++.+.+..++.--.+||
T Consensus 11 ~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL 65 (125)
T PF03245_consen 11 QAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRL 65 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceE
Confidence 3334444444444444444444444444455555555555555555555555554
No 312
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=34.44 E-value=1.6e+02 Score=25.38 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 207 ~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
+++..|+..+..|..|+-.++.+.+. ++...+.+..|-.+++.|||.
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~--------------a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKA--------------LRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhh
Confidence 35666666666666666665555554 555555555555555555543
No 313
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.40 E-value=3.1e+02 Score=23.74 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhHH-HHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 008671 211 NLRLALMDLHLKHKS-LTRELQSRQDID-AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274 (557)
Q Consensus 211 ~Lq~~~~~L~~khk~-ls~e~~~~~d~~-~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~ 274 (557)
.++.....||+.++. ...++..+...+ +.-+.++.+|..++..+.-+.+..+.+|+..+.|.+.
T Consensus 16 ~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 16 AVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554432 222333333222 3467788888888888888888888888888766543
No 314
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=4e+02 Score=25.11 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008671 308 VHKELMDQASHQLLELKGLHDGR 330 (557)
Q Consensus 308 ~leE~~~lA~~Rl~ELe~l~~e~ 330 (557)
.++|+.+.-.+|..+|++..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l 113 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKL 113 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 315
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.26 E-value=2.6e+02 Score=26.33 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008671 484 RADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537 (557)
Q Consensus 484 r~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ld 537 (557)
..+...|+..|-.|.-|++.|...-+....-|+.|..+|.+|+.+-.++.+-+|
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888899999888888888889999999999888877766544
No 316
>PRK15396 murein lipoprotein; Provisional
Probab=34.04 E-value=1.9e+02 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
++..|+..+..|..+.-. +.+.+..+......+..|-.+++.|||..
T Consensus 26 kvd~LssqV~~L~~kvdq--------------l~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQ--------------LSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555555555444 44445555555556666777777777653
No 317
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.76 E-value=3.9e+02 Score=24.81 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 008671 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274 (557)
Q Consensus 207 ~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~ 274 (557)
.|+-+|-..=-.|.-.=...+=.+.+.+.+ -.+++++.+|..+++.+..++...++.++.++....+
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333333333322 2378888999999999999999999999988755433
No 318
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.45 E-value=2.3e+02 Score=26.10 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 008671 354 KAFLSVKNQLEKS 366 (557)
Q Consensus 354 ~~Yk~L~~Q~~~l 366 (557)
+.|+.|=.+|..+
T Consensus 89 ~eYk~llk~y~~~ 101 (126)
T PF09403_consen 89 DEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 319
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.39 E-value=3.5e+02 Score=29.80 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDI----DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~----~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~ 280 (557)
+-.+-..++..++.|+++....+.++...... ...+..+.++|+.++..+...+..++.++..+-+.-.+.....+
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34455567777888888888888888663211 44566677777777777777777777766555444344333334
Q ss_pred c
Q 008671 281 P 281 (557)
Q Consensus 281 ~ 281 (557)
|
T Consensus 115 P 115 (418)
T TIGR00414 115 P 115 (418)
T ss_pred C
Confidence 4
No 320
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=33.07 E-value=3.2e+02 Score=28.79 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhchHHH-HHhhhhhhhhHHHHHhHHHHHHH
Q 008671 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA-----WRETELNMKIDLVDV-FRRSSAVTDSKIADLGIEIQKQI 426 (557)
Q Consensus 354 ~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~-----rq~~E~~~k~E~~e~-~~~~~~~~~~~v~~lE~~Laqvr 426 (557)
..|.....|+...-++|++.|...|.|=.+|..-+ .|++|+. |..+. .++-..+...++..|+..|+++|
T Consensus 13 ~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLL---e~v~~rYqR~y~ema~~L~~LeavLqRir 88 (324)
T PF12126_consen 13 GAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELL---EAVEARYQRDYEEMAGQLGRLEAVLQRIR 88 (324)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 36888888898899999999999988888775432 3344443 33222 22223333455666666666665
No 321
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.02 E-value=68 Score=30.13 Aligned_cols=40 Identities=8% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccccchhHHHHHHhhH
Q 008671 50 LVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSW 89 (557)
Q Consensus 50 L~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W 89 (557)
+.-.|++|+.++..|...|..|+.-+..|++.+.+++..|
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~ 47 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK 47 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4445699999999999999999999999999998888554
No 322
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=32.80 E-value=2.5e+02 Score=24.26 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
|+..+..+...++............++..+.++.+|..+...+.-+|..++|.-+.+..+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 323
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.78 E-value=8.7e+02 Score=28.63 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=14.3
Q ss_pred HhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 008671 456 VSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLS 489 (557)
Q Consensus 456 isSlq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~s 489 (557)
-++..++|..|+.++..+ +++..+...+..+++.
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQE 273 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444332 3334444444444444
No 324
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=32.03 E-value=4.9e+02 Score=25.37 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~ 391 (557)
..|-.+=+.|++.++.-...--.++.+|..- .++.|--+-+..-++-|.++|-||+-|.+++.+.
T Consensus 97 ~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~--------------l~~QQalvy~hMSeeER~EaeQLQsLR~avRqEl 161 (179)
T PF14723_consen 97 RELYSCTVQELQQMRRSLNSFREQMMDLELH--------------LMRQQALVYRHMSEEEREEAEQLQSLRSAVRQEL 161 (179)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766666666666655543 3445555555556778889999999999888775
No 325
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.03 E-value=1.1e+03 Score=29.30 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008671 512 VAEIHKLQAMVQDLTDSNLELKLILD 537 (557)
Q Consensus 512 ~~~i~~l~~~~~~l~~~~~eL~l~ld 537 (557)
..++..++..|..+.+....++..+.
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~ 801 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVT 801 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887554
No 326
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.83 E-value=4e+02 Score=31.73 Aligned_cols=110 Identities=8% Similarity=0.094 Sum_probs=73.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHH
Q 008671 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQ-LSKYKEAALDIHILRADVLSLTN 492 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~e-v~R~kea~~e~~~lr~e~~sl~~ 492 (557)
.-+-++-.=.+|+.+++ ++ +|+..++...|.+-..+|..|-.. -+-+=+|-.|+.++|-++++|+.
T Consensus 27 stDtd~~gP~lRs~~d~------------~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks 94 (800)
T KOG2176|consen 27 STDTDDWGPTLRSVYDG------------NQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKS 94 (800)
T ss_pred ccchhhhhhHHHHHHcc------------CCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666653 24 799999999999988888888655 36667889999999999999888
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 493 VLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 493 ~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
.+..-+.-+.+...-+-....++..++..-..+-..-.=|++-|
T Consensus 95 ~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl 138 (800)
T KOG2176|consen 95 QVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCL 138 (800)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88766655554444444455555555555555555555555533
No 327
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.54 E-value=9.5e+02 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
++.++.+....++..-+.|.-+++.+...++
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444
No 328
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.49 E-value=2.7e+02 Score=32.02 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECET 503 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~ 503 (557)
+.+++||+-..+|..-+..+|+.-- .+-++||..++...+.++..+.++-.|+..
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~kr---qel~seI~~~n~kiEelk~~i~~~q~eL~~ 132 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKR---QELNSEIEEINTKIEELKRLIPQKQLELSA 132 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678888888888888887776543 567889999999888888888877655443
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.19 E-value=3.1e+02 Score=30.82 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=33.7
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH--HhcC----CCc------hhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEE--ASRE----PGR------KEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eq--a~~~----~~~------k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
+.++.++++.++++..+.+.+...+.. .... ... .....++..+......++..+..++
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666665555555554443 2211 110 2356778888888777777777666
No 330
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.10 E-value=49 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 008671 322 ELKGLHDGRIKVLQQLYNLQNTLKS 346 (557)
Q Consensus 322 ELe~l~~e~~~l~~e~~~Lk~~l~d 346 (557)
+++.|..++..|..++..|+..+..
T Consensus 33 ~~~~l~~e~~~L~~~~~~l~~~l~~ 57 (131)
T PF05103_consen 33 ELERLQRENAELKEEIEELQAQLEE 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455556777777777777766553
No 331
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.86 E-value=1.8e+02 Score=30.31 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=40.7
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 219 L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
|++..+.+..+++..++++.-.-+.-..|...|+--.++|+..|+||..|.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777888888899999999999999999998776
No 332
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.55 E-value=81 Score=30.42 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~ 347 (557)
++||+..|..+.+-.+-=-.|| .|...|..+++.|+.+++|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5677766666655444333333 33444455555555555544
No 333
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.52 E-value=7.2e+02 Score=26.82 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 318 HQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 318 ~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
.|-.|-+.|+-.+++|..++-+.+. .|--.+...++|++.+-+++++-.-||.--+++.+.
T Consensus 96 e~q~e~~qL~~qnqkL~nqL~~~~~------------vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQLFHVRE------------VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555555555555555444332 334445555555555555555555555555555544
No 334
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=30.27 E-value=1.9e+02 Score=24.35 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=38.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHhccHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGR---KEIIAEFRALVSSFPEDM 463 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~---k~i~~Emr~LisSlq~~~ 463 (557)
.-+..|+++|.+..-++-.|...+.+--...+. +.+..+++.||..+...-
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998884444442 567788888876554433
No 335
>PF14182 YgaB: YgaB-like protein
Probab=30.24 E-value=3e+02 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHhhhhhHHHHhhhhHHHHH
Q 008671 462 DMSAMQRQLSKYKEAALDIHILRA--DVLSLTNVLERKVKECETLLASSADQVAE 514 (557)
Q Consensus 462 ~~~~Lk~ev~R~kea~~e~~~lr~--e~~sl~~~l~~k~~e~~~l~~~~~~~~~~ 514 (557)
+.--|++++.||.+.-.++..+-. ++++++.-+.++..+++.+....-.|+-+
T Consensus 15 ~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 15 KLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999888888877754 46667777777777777777666666544
No 336
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=30.23 E-value=2e+02 Score=23.61 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.|+.++++|....+..-..-|.++.++=. .=.++-++....=++..++..++++|..+.
T Consensus 6 eLk~evkKL~~~A~~~kmdLHDLaEdLP~-------~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 6 ELKKEVKKLNRKATQAKMDLHDLAEDLPT-------NWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------TGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57778888888888888888888666544 667788888888899999999999887653
No 337
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=29.97 E-value=3.8e+02 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 365 KSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 365 ~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
.|..+.+-|+.+++-+..+++.+...
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l~~~ 34 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREALISG 34 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35666777778888889999888744
No 338
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.90 E-value=5.9e+02 Score=25.68 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=30.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
.++..+|+.+......+..+ ......|+.-+..|...|..++....-+
T Consensus 92 ~~~~~le~~~~~~~~~~~~~-------------~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQA-------------EEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666665555555544 3566677777777777777777776444
No 339
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.88 E-value=4.4e+02 Score=24.11 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=54.5
Q ss_pred HhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHH----HHHHH
Q 008671 405 RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYK----EAALD 479 (557)
Q Consensus 405 ~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~k----ea~~e 479 (557)
....+.+...+...+..|.++..-+++....+..... .|= ......++.-|..|..-|...+..|...+ .+...
T Consensus 22 ~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~-~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~ 100 (147)
T PRK05689 22 ALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGS-AGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKY 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334567777888888887777777777766422 221 33445555558888888888888775442 22333
Q ss_pred HHHHHHHHHhHHHHHHHhhh
Q 008671 480 IHILRADVLSLTNVLERKVK 499 (557)
Q Consensus 480 ~~~lr~e~~sl~~~l~~k~~ 499 (557)
....+.+..++-.+.+++-.
T Consensus 101 ~~~a~~~~k~lEkL~ek~~~ 120 (147)
T PRK05689 101 WQEKKQRLEALETLQERYQT 120 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455554443
No 340
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=29.86 E-value=6.7e+02 Score=26.29 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
..+......++..+...++. +...+......+..+..++.++..+...+..+++.+.|.+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~-------l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~ 141 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQ-------IMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLE 141 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443 3333333333555666777778888888888887777765
No 341
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.84 E-value=3e+02 Score=22.18 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 226 LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 226 ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
+..++...+...-..+.++++-..+-.++..++...++.+..
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 342
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.64 E-value=5.5e+02 Score=25.59 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 458 SFPEDMSAMQRQLSKYKEAALDIHILRAD 486 (557)
Q Consensus 458 Slq~~~~~Lk~ev~R~kea~~e~~~lr~e 486 (557)
.|......|+.++...|..-.+|+.-|..
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555556665554
No 343
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.36 E-value=5.1e+02 Score=24.77 Aligned_cols=23 Identities=0% Similarity=0.281 Sum_probs=12.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHHH
Q 008671 451 EFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 451 Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
.|-.-|+.+..+|.++|-++-||
T Consensus 135 ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555566666666555
No 344
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.46 E-value=2.1e+02 Score=21.55 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHHHHh
Q 008671 217 MDLHLKHKSLTRELQS 232 (557)
Q Consensus 217 ~~L~~khk~ls~e~~~ 232 (557)
+.|...+-.+..++..
T Consensus 8 ~~LK~~yd~Lk~~~~~ 23 (45)
T PF02183_consen 8 DALKASYDSLKAEYDS 23 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 345
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.32 E-value=9.7e+02 Score=27.63 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHH
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEK 365 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~ 365 (557)
.+|+.++.......++.+-|+..+..+ ..-..-.+|-.|..+...
T Consensus 171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~r 216 (557)
T COG0497 171 RELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKR 216 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445555555555555555555433 222234466666555544
No 346
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.09 E-value=4e+02 Score=23.13 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHhhhh-hHHHHhhhhHHHHHHHHHHHHHHHHh
Q 008671 452 FRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLS----LTNVLERKVKE-CETLLASSADQVAEIHKLQAMVQDLT 526 (557)
Q Consensus 452 mr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~s----l~~~l~~k~~e-~~~l~~~~~~~~~~i~~l~~~~~~l~ 526 (557)
++.-+..+.....+|.+++...+.|..++..+..+..- -..++..-..+ ...|.++...-..+|+.+...+..+.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777777777777765322111 11122222222 33444444444445555555555444
Q ss_pred hhHHHHH
Q 008671 527 DSNLELK 533 (557)
Q Consensus 527 ~~~~eL~ 533 (557)
..-.+|+
T Consensus 91 ~~~~elk 97 (105)
T cd00632 91 EKLKELQ 97 (105)
T ss_pred HHHHHHH
Confidence 4444444
No 347
>PRK15396 murein lipoprotein; Provisional
Probab=27.99 E-value=2.7e+02 Score=23.54 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~ 254 (557)
+.|..++..|...++.+......+...... ...|-.+-...|+..
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~-------a~~eA~raN~RlDn~ 72 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQA-------AKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 367778888888888888888888777777 444444545555443
No 348
>PRK10698 phage shock protein PspA; Provisional
Probab=27.94 E-value=6.2e+02 Score=25.30 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=12.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 504 LLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 504 l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
|..-+..+...+..|+..+..|+.+-.+++
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 349
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.88 E-value=1.8e+02 Score=26.93 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrK 264 (557)
.+.+++..+|..+.....--+.+-.+++. ..+++..|+.+|+++...-.+.++|
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~-------Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRA-------KDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35555556666655555555555444444 9999999999999887766655554
No 350
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.74 E-value=3.2e+02 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.154 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 306 ESVHKELMDQASHQLLELKGLHDG 329 (557)
Q Consensus 306 ~~~leE~~~lA~~Rl~ELe~l~~e 329 (557)
+..++++.....+|+..|++...+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~ 105 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEK 105 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777554433
No 351
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=8.8e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKG 249 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~ 249 (557)
.|..|-.+-+..-.+|..----|.-++..+.+++++.+.+|++|+.
T Consensus 138 ~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 138 DLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred hhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4555666666666666666677778888888888889999988883
No 352
>PRK10698 phage shock protein PspA; Provisional
Probab=27.59 E-value=6.3e+02 Score=25.25 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
+.+|+..+.+.+...+.-+..-..+..+...+...+.++..+-.
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~ 76 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAE 76 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999988886643
No 353
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.58 E-value=2.3e+02 Score=32.55 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
|...|+..-..|+....++-.++.+++..+-..+.++..|++.+|.++-.+++++.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33334444444444445555555555555555888888888888888887777765
No 354
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.48 E-value=3.2e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=21.3
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRAD 486 (557)
Q Consensus 455 LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e 486 (557)
=+..+...+.+|+.++.++..|..++..+..+
T Consensus 13 ~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 13 QLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455566667777777777777777776554
No 355
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.29 E-value=2.7e+02 Score=29.85 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEEC 261 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~ 261 (557)
...|...|+.....|++.|+.+..+++.+......--+.+..-+.++.++...+.++
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888899988888887766655555555555444555555544444
No 356
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=3.3e+02 Score=25.68 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~ 343 (557)
++-|+..++++.....+=-..|.+|-.....+.++++.++-+
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777666677777777777777777766543
No 357
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.82 E-value=7.4e+02 Score=25.77 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=29.8
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 348 KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (557)
Q Consensus 348 ~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~ 387 (557)
++|.+|.-|.-|=+++.-+..-++-=+..++-+..++..+
T Consensus 121 dvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~L 160 (265)
T COG3883 121 DVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSL 160 (265)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7888899999888888888777777777765555555333
No 358
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.82 E-value=1.5e+02 Score=23.79 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=14.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHH
Q 008671 457 SSFPEDMSAMQRQLSKYKEAALD 479 (557)
Q Consensus 457 sSlq~~~~~Lk~ev~R~kea~~e 479 (557)
.-|..+|..|++|+.|.+.+-..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777554433
No 359
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.65 E-value=8e+02 Score=26.14 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=51.8
Q ss_pred HHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHH-Hhh--hhhH
Q 008671 435 RLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRA--------DVLSLTNVLE-RKV--KECE 502 (557)
Q Consensus 435 e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~--------e~~sl~~~l~-~k~--~e~~ 502 (557)
|+|++.-+.|- .-.++..+-=++-|..+-..|+.||.|.|-++..+...-+ .|==.+.-|+ |.. .|+.
T Consensus 46 ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ 125 (351)
T PF07058_consen 46 ELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQ 125 (351)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHH
Confidence 56666656664 4477788888888899999999999999988888877544 1222355564 333 3666
Q ss_pred HHHhhhhH
Q 008671 503 TLLASSAD 510 (557)
Q Consensus 503 ~l~~~~~~ 510 (557)
.|.|++|-
T Consensus 126 ~LrDKLAi 133 (351)
T PF07058_consen 126 QLRDKLAI 133 (351)
T ss_pred HHHHHHHH
Confidence 67666543
No 360
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.65 E-value=3.6e+02 Score=22.05 Aligned_cols=48 Identities=17% Similarity=0.080 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELE 259 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~ele 259 (557)
|...++.|-..|..+-.+-..++.......++-..|....+.|...++
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444333
No 361
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.42 E-value=7.5e+02 Score=25.73 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASS 508 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~ 508 (557)
.+-..+++.|.+...++.+++..+ +.+..+-.+|-.-+++|..|++....|+
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l----------~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQL----------NNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 3334444444444555555554444443
No 362
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.28 E-value=8.4e+02 Score=26.22 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=67.4
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hhhh---------hccCCcccccCCC
Q 008671 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR---AERD---------VTKGAFFPVLNLG 286 (557)
Q Consensus 219 L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~---~E~~---------~~~g~~~~~~~~~ 286 (557)
|..-|+.....+...++..+....++..+.-+|..+.||-.-..+-+.+-. .... ....++..++
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~--- 79 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEIS--- 79 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhcc---
Confidence 445567777778888888888999999999999999998888777665443 1100 0001111000
Q ss_pred CCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008671 287 NKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (557)
Q Consensus 287 ~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~ 345 (557)
......+.+ -..+ +..|+-|+.+=+.|+. ++++|......+.+++...+..|.
T Consensus 80 ~~~~~~~~~-H~lm-l~RL~~EL~~Rk~L~~----~~~el~~~k~~l~~~~~~k~~~L~ 132 (355)
T PF09766_consen 80 DPELTEDDE-HQLM-LARLEFELEQRKRLEE----QLKELEQRKKKLQQENKKKKKFLD 132 (355)
T ss_pred ccccCCCCh-HHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111 1123 6788888887666654 344555555555555555555544
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.23 E-value=1.8e+02 Score=30.93 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=15.1
Q ss_pred HHHhhccccchhHHHHHHhhHHHHHHHHH
Q 008671 69 AQLKERQQPYDSTLKVVNKSWEELITDLE 97 (557)
Q Consensus 69 e~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~ 97 (557)
.++..++..-+..|..+.-.+..=.+-|.
T Consensus 71 ~ei~~~~~~a~~~L~~a~P~L~~A~~al~ 99 (344)
T PF12777_consen 71 KEIEEIKEEAEEELAEAEPALEEAQEALK 99 (344)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666655555555444333
No 364
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.09 E-value=3.4e+02 Score=23.40 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELES 253 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~ 253 (557)
+.|+.++..|...++.+......+...... ...|-.+-...|+.
T Consensus 27 dqLss~V~~L~~kvdql~~dv~~a~aaa~a-------Ak~EA~RAN~RiDN 70 (85)
T PRK09973 27 NQLASNVQTLNAKIARLEQDMKALRPQIYA-------AKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhh
Confidence 467888888888888888888888888887 44444444444443
No 365
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=25.94 E-value=3e+02 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~ 343 (557)
+.+|..|-.-|.+..++|..|-++++.++.+
T Consensus 110 k~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eE 140 (200)
T PF07412_consen 110 KELAEERRKALEEALEENEKLHKEIEQKDEE 140 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888999888888888888876664
No 366
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.91 E-value=6.3e+02 Score=24.64 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 401 ~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
+|+.|+++. .-.+-..=|.+||.+|-|+...+..
T Consensus 69 ~ELIRQVTi----~C~ERGlLL~rvrde~~~~l~~y~~ 102 (189)
T PF10211_consen 69 DELIRQVTI----DCPERGLLLLRVRDEYRMTLDAYQT 102 (189)
T ss_pred HHHHHHHHh----CcHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455554 3344455578999999887776543
No 367
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.64 E-value=9.6e+02 Score=26.72 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 359 L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
-.+++.+.+.+++++...+.+-+..-..|+.+ .-.. +- +..-.... .-|..||.+|+..+.+...|+.-+
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~--~gvl--DP-~~~a~~~~---~lI~~Le~qLa~~~aeL~~L~~~~-- 309 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHI--QKDI--DP-KETITAIY---QLIAGFETQLAEAKAEYAQLMVNG-- 309 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCc--Ch-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 46778888888888888844334433344432 1111 11 11122222 577888888888888887774321
Q ss_pred HhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 439 ASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 439 a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
. +..|-+.-++.=|.+|..+|...++.+
T Consensus 310 --~--p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 310 --L--DQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred --C--CCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 1 223666666666666666666665555
No 368
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.62 E-value=5.5e+02 Score=23.93 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 479 DIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 479 e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
++.+....+..+.....+.......|-...+.-......-+..|+.|+.++..|+
T Consensus 41 ~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 41 ELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3333333333333333333333444433333333344444444555555555544
No 369
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=25.55 E-value=2.7e+02 Score=31.31 Aligned_cols=53 Identities=28% Similarity=0.307 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008671 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKEL 258 (557)
Q Consensus 206 ~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~el 258 (557)
..|.-+|.....+.++|.+.+..++.+++|.+++++++..-|...|-.++--+
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~v 79 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQV 79 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 67888999999999999999999999999999999999988888887776443
No 370
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.53 E-value=2.4e+02 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~ 443 (557)
.+|..+|..+++||..-+.+...+.-..-.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~ 35 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSP 35 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCCh
Confidence 6899999999999999999988887644333
No 371
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.41 E-value=2.2e+02 Score=29.59 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 312 ~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
...-....+..+..+++||..|.+|+..|+..+. .+.+.++.|++++|.+
T Consensus 57 ~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~---------------~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 57 VFDGISENLKDVNNLEYENYKLRQELLKKNQQLE---------------ILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Confidence 3444555677888888888888888877744322 2334477778887777
No 372
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.41 E-value=1.3e+03 Score=27.98 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHH--------HHHHHHHHH----------HHHhHHHHHHHhhhhhHHHHhh
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA--------ALDIHILRA----------DVLSLTNVLERKVKECETLLAS 507 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea--------~~e~~~lr~----------e~~sl~~~l~~k~~e~~~l~~~ 507 (557)
|..+++|..-+...-.+|.+|+.+++-|.+. +.=-+.++. .+.-|..+...|..=|+.|.|+
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdq 550 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQ 550 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665444211 111111111 1222444455555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 508 SADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 508 ~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
.-.-..|+.+-...|..+....+||+-.+
T Consensus 551 ldelskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 54444444444444444444444444433
No 373
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=25.34 E-value=4.9e+02 Score=24.95 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=52.2
Q ss_pred HhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhhhhhH-HHHhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 008671 456 VSSFPEDMSAM--QRQLSKYKEAALDIHILRADVLSLT-NVLERKVKECE-TLLASSADQVAEIHKLQAMVQDLTDSNLE 531 (557)
Q Consensus 456 isSlq~~~~~L--k~ev~R~kea~~e~~~lr~e~~sl~-~~l~~k~~e~~-~l~~~~~~~~~~i~~l~~~~~~l~~~~~e 531 (557)
|+++...+..| ++....|+++...|..|+.++.... +-|+.|...+. .+.++++....-++..+..++...+...+
T Consensus 30 Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~~NAEleekll~lq~lfq~Kl~aKL~aLKAak~~i~~~~d~d~~ 109 (160)
T PF03978_consen 30 INSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDVSNAELEEKLLKLQKLFQDKLEAKLAALKAAKQKIEGIQDKDQE 109 (160)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 33444444444 3345789999999999999998864 35666666554 45777888777777777777777655544
No 374
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=25.05 E-value=1.7e+02 Score=22.37 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=23.1
Q ss_pred HHhhhhHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008671 42 VLQFQNQKLVQKLETQKVEYSALENKFAQLKERQ 75 (557)
Q Consensus 42 vLqfQn~kL~qqLe~~k~e~~~LE~rie~L~~rQ 75 (557)
++.||++-.. .|+.-.+..+++-.|++.|+.++
T Consensus 14 lv~FQ~~v~~-~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 14 LVAFQNKVTS-ALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899997665 34444445778888888888764
No 375
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.93 E-value=1.3e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALD 479 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e 479 (557)
.+.|+-.=|..||.+|.-|++|+.+-+...+-
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK~~srsA 57 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKKKASRSA 57 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 45566666666777777777776655444333
No 376
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.81 E-value=6.6e+02 Score=24.54 Aligned_cols=100 Identities=9% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 008671 324 KGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDV 403 (557)
Q Consensus 324 e~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~ 403 (557)
.++.+..+.+.+.+..+-.+++.++...+++ .+|...+.|+.++..+|.-++++.+-++-+.-.+ . +.+
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e---emQe~i~~L~kev~~~~erl~~~k~g~~~vtped--k----~~v-- 157 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTE---EMQEEIQELKKEVAGYRERLKNIKAGTNHVTPED--K----EQV-- 157 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH--H----HHH--
Confidence 3444444445555555555555444444343 3667777799999999998888877764443332 2 211
Q ss_pred HHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008671 404 FRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR 445 (557)
Q Consensus 404 ~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~ 445 (557)
--..+.-...+|+.+.|.+.-+..-+...++
T Consensus 158 -----------~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk 188 (201)
T KOG4603|consen 158 -----------YREYQKYCKEWRKRKRMFREIIDKLLEGLPK 188 (201)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 1122344567888888888888888888775
No 377
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.64 E-value=6.6e+02 Score=24.48 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 207 ~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
.+..++...+...++....+...-..-.+++..++.++.+++..++.+..+++.+-.
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443333555566666666666666666666655544
No 378
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.56 E-value=8.4e+02 Score=25.65 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 323 LKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVE 383 (557)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~e 383 (557)
|.+++.|++.|.+=++.++..|.+- =+-+|.+|-+.+.++..+-.+ ||.-
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ek--------DkGiQKYFvDINiQN~KLEsL---LqsM 168 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEK--------DKGIQKYFVDINIQNKKLESL---LQSM 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchh--------hhhHHHHHhhhhhhHhHHHHH---HHHH
Confidence 5667778888888999999988754 366788899998888888888 5543
No 379
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.47 E-value=5.8e+02 Score=23.78 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
.+...+...+..+.............+..+.......+..-.+|..+++.+...+-..++++.+|+-|
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555566666666666666666666666666677788888888888888888888888888755
No 380
>PF13166 AAA_13: AAA domain
Probab=24.42 E-value=1.1e+03 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH
Q 008671 47 NQKLVQKLETQKVEYSALENKFAQ 70 (557)
Q Consensus 47 n~kL~qqLe~~k~e~~~LE~rie~ 70 (557)
|..+..++..-+..+..+..++..
T Consensus 91 ~~~~~~~I~~l~~~l~~~~~~~~~ 114 (712)
T PF13166_consen 91 NIEIEKEIEELKEELKKLEKEIEE 114 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443333
No 381
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.32 E-value=1.3e+02 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHccC
Q 008671 515 IHKLQAMVQDLTDSNLELKLILDMYRRE 542 (557)
Q Consensus 515 i~~l~~~~~~l~~~~~eL~l~ldmy~~e 542 (557)
|..|+..+..|+..-+-|+..+.+|++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999873
No 382
>PRK02119 hypothetical protein; Provisional
Probab=24.26 E-value=1.2e+02 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHh
Q 008671 60 EYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (557)
Q Consensus 60 e~~~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL 99 (557)
++..++.||..|+.|-++-++++-..|..-..-...|..|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=24.06 E-value=4.1e+02 Score=28.62 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~ 478 (557)
++.++-.+|-++..+++.++ .....-|..|+++....|..|+..|...++...
T Consensus 159 e~~~~~~qlE~~v~~K~~~E------------~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 159 EANKLLKQLEKFVNAKEEHE------------EDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Confidence 34444455555555555554 355667777777777777777777766554433
No 384
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.95 E-value=7.6e+02 Score=24.91 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 219 L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+.++-..+..+++.-...+.+.+..+..|+-|.|+.+-||+..-.+-..|+
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333333333334444444444555556666666665555555444333333
No 385
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.84 E-value=6e+02 Score=23.72 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 449 IAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRA 485 (557)
Q Consensus 449 ~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~ 485 (557)
-.|+..++..+.+|+..|.+-....+.....|...++
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~ 157 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYA 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5689999999999999998888776665555555444
No 386
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.49 E-value=48 Score=38.28 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk 341 (557)
+..|...++++......|..++..|......+-.++...-
T Consensus 86 ~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~ 125 (619)
T PF03999_consen 86 LPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELP 125 (619)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4567788889999999999999998877777776665433
No 387
>PLN02678 seryl-tRNA synthetase
Probab=23.45 E-value=5.4e+02 Score=28.74 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMK-IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e 435 (557)
+-.+.-.....++.|+++|+.+..++...+.. .+..++...... ...++..+|..+..+..+...+...
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~-Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE-LKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555556677788888888775332211 222222222221 2356666666666665555554443
No 388
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.22 E-value=9e+02 Score=26.04 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHHhhhhhHHHH-hhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 484 RADVLSLTNVLERKVKECETLL-ASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 484 r~e~~sl~~~l~~k~~e~~~l~-~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
+.+...+...|++.+.+=..+. +=|+..+.-+++=|+.|..|+..-..++
T Consensus 157 ~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 157 ESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3333334444444443333331 2244444444544554444444444444
No 389
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.18 E-value=5.2e+02 Score=22.71 Aligned_cols=40 Identities=13% Similarity=0.356 Sum_probs=26.9
Q ss_pred chHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 399 DLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 399 E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
|+.+...+.+...+.++..++..+..+....+++...+.+
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556777777777777777777777766654
No 390
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.13 E-value=4.9e+02 Score=22.41 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIK 332 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~ 332 (557)
..|+.++.+.+..+.+=-.+|..|+.+|.+
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 678899999999999999999999998875
No 391
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.12 E-value=1e+03 Score=26.20 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHccCCCCccch
Q 008671 476 AALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMV-QDLTDSNLELKLILDMYRRESTDSRFV 549 (557)
Q Consensus 476 a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~-~~l~~~~~eL~l~ldmy~~e~~d~rd~ 549 (557)
-.+||.-|+.++.||+.-|-.-...-+--+++|.+.-.++.-.|+.- |+.-.=+..|++-..-++--+.|+-.|
T Consensus 517 KEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEKspdsatv 591 (593)
T KOG4807|consen 517 KESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEKSPDSATV 591 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcccCCccccc
Confidence 34667777777777766555444444445677777666665555541 122222335677777777666665443
No 392
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.06 E-value=8.6e+02 Score=25.25 Aligned_cols=31 Identities=3% Similarity=0.086 Sum_probs=20.2
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008671 409 AVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (557)
Q Consensus 409 ~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa 439 (557)
+++..++.+.+.++...+..++.+...+.++
T Consensus 141 ~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 171 (331)
T PRK03598 141 TISANDLENARSSRDQAQATLKSAQDKLSQY 171 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777776666554
No 393
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.05 E-value=9e+02 Score=25.45 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 008671 473 YKEAALDIHILRADVLSLTNVLERKVKECE 502 (557)
Q Consensus 473 ~kea~~e~~~lr~e~~sl~~~l~~k~~e~~ 502 (557)
+|||..||.-||.-++.++.-|..|.+.+.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 388888888888888888888887765443
No 394
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.65 E-value=4.5e+02 Score=23.41 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVK------------ELEECNCKLAAL 268 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~------------elek~rrKL~~l 268 (557)
.+|...+..|...+..+...-..+...+..+-...+.++-++..|...|..... ..-+.+.-|+++
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
No 395
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.52 E-value=3e+02 Score=26.07 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 332 KVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (557)
Q Consensus 332 ~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~ 387 (557)
.+.+|+.+++.++...+..-+=.-|--|+.++..++++++..... +...+..+
T Consensus 44 ~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~---~~~~~~~~ 96 (161)
T PF04420_consen 44 QLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS---LSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH---HHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344444444444443311112223666788888887777777666 44444443
No 396
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=22.40 E-value=9e+02 Score=25.21 Aligned_cols=55 Identities=15% Similarity=0.334 Sum_probs=37.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
.-+.+||..|.-+....+.|+..++.. +....|=..+..||..+-..|+.++...
T Consensus 96 kl~~eLe~vLs~~q~KnekLke~LerE------q~wL~Eqqql~~sL~~r~~elk~~~~~~ 150 (268)
T PF11802_consen 96 KLISELEMVLSTVQSKNEKLKEDLERE------QQWLDEQQQLLESLNKRHEELKNQVETF 150 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445555555555555555555444431 5788899999999999999999988554
No 397
>PRK10093 primosomal replication protein N''; Provisional
Probab=22.33 E-value=7.3e+02 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=21.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLE 437 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~e 437 (557)
..++..+|..|+|||.+...++--++
T Consensus 142 q~el~alegRL~RCrqAl~~IE~~Ie 167 (171)
T PRK10093 142 HREVEAYEGRLARCRHALEKIENVLA 167 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999887765554
No 398
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.27 E-value=5.3e+02 Score=24.38 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008671 243 KLNRLKGELESAVKELE 259 (557)
Q Consensus 243 e~~eL~~~LE~~~~ele 259 (557)
.+.+|+.++++++.++.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56666666666666666
No 399
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=22.12 E-value=6.5e+02 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 301 DLRDMESVHKELMDQASHQLLELKGL 326 (557)
Q Consensus 301 ~~~eL~~~leE~~~lA~~Rl~ELe~l 326 (557)
++++.+..+++.++.+..++..+-.-
T Consensus 166 E~e~ae~k~e~~~e~~~~~M~~~l~~ 191 (244)
T cd07595 166 EYEEAELKLEQCRDALATDMYEFLAK 191 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36777888888888888888876553
No 400
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=22.10 E-value=3.4e+02 Score=31.39 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccc--cChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN-TLKSVKCLS--SSKAFLSVKNQLEKSKSEVFKYQALFE 378 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~-~l~d~~~I~--~S~~Yk~L~~Q~~~lkaeld~~R~l~e 378 (557)
++.+...++.++..-+.|+.+...+..+...+..++..--. ..-..+++. +.....+| ....++.++....
T Consensus 144 l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~L------s~~~l~~L~~~~~ 217 (619)
T PF03999_consen 144 LEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCL------SDENLEKLQELLQ 217 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCC------CHHHHHHHHHHHH
Confidence 88999999999999999999999999998888877765433 111111111 11222222 2222222222222
Q ss_pred HHHHHHHHHHHHHHHhh---------hh--hchHHHH-HhhhhhhhhHHHHHhHHHHHHHHHH--------HHHHHHHHH
Q 008671 379 KLQVEKDNLAWRETELN---------MK--IDLVDVF-RRSSAVTDSKIADLGIEIQKQIDEK--------NRIEMRLEE 438 (557)
Q Consensus 379 kLQ~er~~~~rq~~E~~---------~k--~E~~e~~-~~~~~~~~~~v~~lE~~Laqvr~er--------e~L~~e~eq 438 (557)
.|+.++.....+..++. |. .|.-+.+ .........-|..++..|.+|..-+ +.++.++++
T Consensus 218 ~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~e 297 (619)
T PF03999_consen 218 ELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEE 297 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23333222221100000 00 0111111 1111112344444554444333222 444444444
Q ss_pred ---Hhc--CCCc---hhHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 008671 439 ---ASR--EPGR---KEIIAEF--RALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASS 508 (557)
Q Consensus 439 ---a~~--~~~~---k~i~~Em--r~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~ 508 (557)
... ...+ .+...+. -.|+.....+|..|+....-+|+.=.-|.+.. .+-.-...|+.+...-..|..|.
T Consensus 298 lWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~-~l~~~~~~Le~~~~D~~Rl~~RG 376 (619)
T PF03999_consen 298 LWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVEKWE-SLWEEMEELEESSKDPSRLNNRG 376 (619)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-CCGG----
T ss_pred HHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhcccc
Confidence 000 0011 1111111 23455555555555555544444332222222 12223445556665555666666
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCC
Q 008671 509 ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRREST 544 (557)
Q Consensus 509 ~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~~ 544 (557)
+.-..|-+.-+....+|=.=+.+|+-.+.-|..+..
T Consensus 377 g~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g 412 (619)
T PF03999_consen 377 GHLLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHG 412 (619)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 555666677777777888888888888888876543
No 401
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=21.92 E-value=9.7e+02 Score=25.40 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHHHHHHHH----HhHHHHHHHHhhhhhhHHHHHHH
Q 008671 202 SSNLQSEVKNLRLALMDLHL----KHKSLTRELQSRQDIDAKDKAKL 244 (557)
Q Consensus 202 n~~L~~E~~~Lq~~~~~L~~----khk~ls~e~~~~~d~~~~~e~e~ 244 (557)
|..|..|+..|+..++.+.. |.+.|..++..+.++..-++..+
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~l 47 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSL 47 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888887643 44455555555444444444333
No 402
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.87 E-value=3.2e+02 Score=24.10 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 008671 235 DIDAKDKAKLNRLKGELESAVKEL-EECNCKLAAL 268 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~el-ek~rrKL~~l 268 (557)
.....++..+..+..+||++++.| +.+++-.+..
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~a 42 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADA 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557778888888888888888 5666644333
No 403
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.87 E-value=7.8e+02 Score=24.33 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 354 ~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
+|.+.|...+..+...+.++|..+...-+.+..+-++
T Consensus 24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~ 60 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERR 60 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888877777766666555
No 404
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.59 E-value=4.6e+02 Score=25.41 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~r 262 (557)
...|...+..| ..|.....++..++..+..+...++.+-.+|.++.-+|..+-
T Consensus 11 d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 578888888888655555555555555555555555555443
No 405
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=21.48 E-value=6.2e+02 Score=23.02 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=34.3
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccH-HH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFP-ED 462 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq-~~ 462 (557)
++....+++..+..++.+-+.|+.+++.|..--.++.--+.+...|++.+ .+
T Consensus 79 Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~sR 131 (139)
T PF05615_consen 79 YEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPTSR 131 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34566667777777777777777777776655555556666666666666 44
No 406
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.44 E-value=6.2e+02 Score=27.83 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--hHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 008671 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID--LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (557)
Q Consensus 361 ~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E--~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~ 436 (557)
+++-.+-.+.-++...++.|+++|+....++...+.+.+ ..++..+.+. ...++..+|..+..+..+.+.+...+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKE-LKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555556666677788889888887544221222 2233333222 25677777777777777666665544
No 407
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.38 E-value=2.9e+02 Score=24.46 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIK----VLQQLYNLQNT 343 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~----l~~e~~~Lk~~ 343 (557)
|-..+... |..=.=.....+|++|++.+.. -.+++..|...
T Consensus 54 f~krE~A~-E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 54 FGKREAAQ-EEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555444 3444556677778887777777 66777766654
No 408
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=21.36 E-value=4.2e+02 Score=23.27 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccc-ccChhHHHHHHHHHHHHHHHHHHH
Q 008671 303 RDMESVHKELMDQ------ASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCL-SSSKAFLSVKNQLEKSKSEVFKYQ 374 (557)
Q Consensus 303 ~eL~~~leE~~~l------A~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I-~~S~~Yk~L~~Q~~~lkaeld~~R 374 (557)
.+..+++.|.++| .+++..+|+........=+.+-..+. .+.+. .-+ ..++.|+..+.++..|..-|...+
T Consensus 15 ~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK 93 (101)
T PF07303_consen 15 AEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIK 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008671 375 ALF 377 (557)
Q Consensus 375 ~l~ 377 (557)
.++
T Consensus 94 ~~I 96 (101)
T PF07303_consen 94 QLI 96 (101)
T ss_dssp HHH
T ss_pred HHH
No 409
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.23 E-value=92 Score=20.32 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.9
Q ss_pred hhHHHHHhHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQID 427 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ 427 (557)
+++|.+||..|..|+.
T Consensus 7 r~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 7 RNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6899999999998874
No 410
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.86 E-value=5.2e+02 Score=25.23 Aligned_cols=82 Identities=11% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhh--hhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008671 462 DMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKV--KECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (557)
Q Consensus 462 ~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~--~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ 535 (557)
+...|.+++.+| +.-+..+..+.+++.+|.+.|.--. .++..|-.-|++.-..|+.+++=+.-.. -.+.+-.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt--pedk~~v 157 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT--PEDKEQV 157 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHH
Confidence 344555555555 4455566677777777777776433 3455666666666666666665543222 2233344
Q ss_pred HHHHccCCCC
Q 008671 536 LDMYRRESTD 545 (557)
Q Consensus 536 ldmy~~e~~d 545 (557)
-+||.+.++.
T Consensus 158 ~~~y~~~~~~ 167 (201)
T KOG4603|consen 158 YREYQKYCKE 167 (201)
T ss_pred HHHHHHHHHH
Confidence 4555544443
No 411
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.84 E-value=1.3e+03 Score=26.40 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=35.0
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
----|..+++...+++++++.+.+.|.=+-+=.+..|++-.++++.+.
T Consensus 303 s~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLe 350 (518)
T PF10212_consen 303 SREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLE 350 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678889999999999999999866333333667778777776554
No 412
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.78 E-value=1.5e+02 Score=24.16 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccchhHHHHHHhhHHHHHHHHHHh
Q 008671 63 ALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (557)
Q Consensus 63 ~LE~rie~L~~rQ~~~D~~L~~Vnr~W~QL~ddl~lL 99 (557)
.++.||..|+.|-++-|+++-..|..--+....|..|
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L 37 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRL 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 413
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=4.1e+02 Score=26.72 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHhccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhHH
Q 008671 445 RKEIIAEFRALVSSFPEDMSAMQRQL------------SKYKEAALDIHILRADVLSLT 491 (557)
Q Consensus 445 ~k~i~~Emr~LisSlq~~~~~Lk~ev------------~R~kea~~e~~~lr~e~~sl~ 491 (557)
+++.+.++..-..-..+-+.+|.-|| .|+|++++++..++.++.+..
T Consensus 34 kk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 34 KKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36688888888888888888888887 566999999999999987765
No 414
>PF15294 Leu_zip: Leucine zipper
Probab=20.56 E-value=9.9e+02 Score=25.02 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccChhHHHHHHHHHHHHHHHHHH
Q 008671 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKY 373 (557)
Q Consensus 299 ~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~----~~I~~S~~Yk~L~~Q~~~lkaeld~~ 373 (557)
.+++..|+.+.+.++.-...=-.+--....+...+..++..|+....+. +.+.......-|..++..++.+++..
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 3456777777776665322222222333445555555555555533322 22344667777777777776665554
No 415
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.52 E-value=6.6e+02 Score=27.70 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKI-DLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~-E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~ 436 (557)
+-.+..+.+..++.|+.+|+.+..++.....+. +..++..+.+. ...++..+|..+..+..+.+.+...+
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKE-LKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444445555566677888888877753322222 23333333332 35677777777777777776665544
No 416
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.49 E-value=5.4e+02 Score=24.76 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 220 HLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELE 259 (557)
Q Consensus 220 ~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~ele 259 (557)
.++......++..+...+.+.+.+++.|+.|.+.++.+|+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455566677777777777778888888888877776653
No 417
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.43 E-value=9.3e+02 Score=24.63 Aligned_cols=47 Identities=6% Similarity=0.181 Sum_probs=25.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYK 474 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~k 474 (557)
...+..+...+++.+.+++.+..+++..-...+ .=+..|+.|+.||+
T Consensus 162 Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve----------------~a~~~~k~e~~Rf~ 208 (243)
T cd07666 162 QAELDSKVEALANKKADRDLLKEEIEKLEDKVE----------------CANNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 345555566666666666666555544222111 11455778888883
No 418
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=20.34 E-value=9e+02 Score=24.42 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccC
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN 284 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~ 284 (557)
+..+....-..+.+...++..+..+....+.+..+.....+.-...+|.++..+.+...++..++.+.......
T Consensus 117 l~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~------ 190 (237)
T cd07657 117 IDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLE------ 190 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34444444445555555555555555554444443333322223344555555555555554444332221100
Q ss_pred CCCCCCCCCccchhhhc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 285 LGNKHVAGDRVRDEQRD---LRDMESVHKELMDQASHQLLELKGLHDGRIKV 333 (557)
Q Consensus 285 ~~~~~~~~~~~~~~~k~---~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l 333 (557)
.|..+. +.+|=.-++.++.+-..|...+.+...+....
T Consensus 191 -----------aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~~ 231 (237)
T cd07657 191 -----------AQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLRY 231 (237)
T ss_pred -----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111 23444456666777777777777666655544
No 419
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.19 E-value=3.9e+02 Score=22.52 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 008671 473 YKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE 531 (557)
Q Consensus 473 ~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~e 531 (557)
.++....+..+|-.++.++.++..=. .+..-...|-.+|..|+..+...++=-..
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lp----gi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELP----GIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888776544 36666778888888888887766554333
No 420
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=20.13 E-value=5.6e+02 Score=23.08 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHH
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLE 364 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~ 364 (557)
+.++..+.....-...+..-.+.++..|..|++.++..+..|+.- -.-.|....|..+|=
T Consensus 27 q~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq~r--~~p~P~~~~let~Yw 86 (109)
T PF15134_consen 27 QQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQTR--PLPPPEVVSLETRYW 86 (109)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHH
Confidence 344444444444456777888999999999999999999998865 344666766766653
No 421
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.08 E-value=80 Score=26.58 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 008671 324 KGLHDGRIKVLQQLYNLQNTL 344 (557)
Q Consensus 324 e~l~~e~~~l~~e~~~Lk~~l 344 (557)
.+++++|..|.+++++|..+|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433
Done!