Query 008671
Match_columns 557
No_of_seqs 116 out of 140
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.3 0.0037 1.3E-07 60.1 32.3 54 212-265 11-64 (284)
2 1c1g_A Tropomyosin; contractIl 97.9 0.021 7.2E-07 54.7 34.2 19 240-258 46-64 (284)
3 1i84_S Smooth muscle myosin he 97.7 6.7E-05 2.3E-09 89.8 10.3 8 92-99 709-716 (1184)
4 2v71_A Nuclear distribution pr 97.3 0.0078 2.7E-07 57.3 16.5 170 353-542 2-183 (189)
5 3na7_A HP0958; flagellar bioge 94.4 4.2 0.00014 40.0 20.3 59 211-269 22-80 (256)
6 3o0z_A RHO-associated protein 94.4 2.4 8.3E-05 39.4 16.9 119 366-495 11-131 (168)
7 3na7_A HP0958; flagellar bioge 94.0 2.4 8.3E-05 41.7 17.4 28 411-438 102-129 (256)
8 3vkg_A Dynein heavy chain, cyt 93.9 17 0.0006 47.7 29.0 76 310-390 2017-2092(3245)
9 2v71_A Nuclear distribution pr 92.7 6.8 0.00023 37.1 23.0 114 304-438 42-155 (189)
10 4gkw_A Spindle assembly abnorm 90.6 5.4 0.00018 35.4 13.0 51 412-468 10-60 (167)
11 3o0z_A RHO-associated protein 90.4 4.4 0.00015 37.6 13.0 71 447-517 48-136 (168)
12 2dfs_A Myosin-5A; myosin-V, in 88.8 6.5 0.00022 46.6 16.2 53 412-473 990-1042(1080)
13 3i00_A HIP-I, huntingtin-inter 87.5 4.3 0.00015 35.7 10.3 104 321-433 15-119 (120)
14 3vkg_A Dynein heavy chain, cyt 87.5 52 0.0018 43.5 24.1 17 76-92 1507-1523(3245)
15 2v4h_A NF-kappa-B essential mo 87.4 10 0.00036 32.6 12.3 58 302-385 26-83 (110)
16 3s4r_A Vimentin; alpha-helix, 83.9 9.3 0.00032 31.9 10.2 61 204-264 27-92 (93)
17 2v66_B Nuclear distribution pr 82.9 23 0.00077 30.7 14.9 96 325-438 7-102 (111)
18 3q8t_A Beclin-1; autophagy, AT 82.6 9.9 0.00034 32.0 9.9 61 302-365 6-71 (96)
19 2v66_B Nuclear distribution pr 82.1 24 0.00083 30.5 12.4 100 412-523 2-101 (111)
20 3etw_A Adhesin A; antiparallel 80.8 20 0.0007 31.3 11.5 85 457-541 5-103 (119)
21 1uii_A Geminin; human, DNA rep 79.2 11 0.00038 30.9 8.6 50 313-381 31-80 (83)
22 2fxo_A Myosin heavy chain, car 79.1 33 0.0011 30.1 15.8 114 206-342 12-125 (129)
23 2eqb_B RAB guanine nucleotide 78.1 11 0.00038 31.9 8.6 66 204-269 9-75 (97)
24 3ghg_A Fibrinogen alpha chain; 77.8 40 0.0014 36.5 14.8 66 303-368 113-190 (562)
25 3cve_A Homer protein homolog 1 77.7 9 0.00031 30.7 7.5 53 458-510 11-67 (72)
26 2dfs_A Myosin-5A; myosin-V, in 77.5 11 0.00036 44.8 11.5 78 456-533 962-1043(1080)
27 2ocy_A RAB guanine nucleotide 77.2 39 0.0013 30.9 12.7 26 413-438 13-38 (154)
28 1ic2_A Tropomyosin alpha chain 76.0 23 0.00079 28.5 9.9 64 205-268 11-74 (81)
29 3cvf_A Homer-3, homer protein 76.0 10 0.00035 30.9 7.5 53 458-510 17-73 (79)
30 3hnw_A Uncharacterized protein 72.7 18 0.00062 32.4 9.2 85 449-533 27-130 (138)
31 3oja_B Anopheles plasmodium-re 71.7 31 0.0011 37.2 12.8 62 414-477 471-532 (597)
32 3u1c_A Tropomyosin alpha-1 cha 71.5 25 0.00085 29.7 9.4 61 205-265 14-74 (101)
33 3tnu_B Keratin, type II cytosk 69.6 42 0.0014 29.3 10.8 21 412-432 88-108 (129)
34 3ajw_A Flagellar FLIJ protein; 69.5 57 0.002 28.5 12.0 90 409-498 29-122 (150)
35 1jcd_A Major outer membrane li 68.7 19 0.00067 26.9 7.0 46 222-267 5-50 (52)
36 2jee_A YIIU; FTSZ, septum, coi 68.7 30 0.001 28.3 8.7 11 240-250 53-63 (81)
37 3tnu_A Keratin, type I cytoske 67.2 39 0.0013 29.7 10.1 36 307-342 17-52 (131)
38 2zxx_A Geminin; coiled-coil, c 65.2 31 0.0011 28.0 8.1 57 313-381 19-75 (79)
39 1deq_A Fibrinogen (alpha chain 65.0 50 0.0017 34.3 11.6 45 502-546 123-167 (390)
40 3u59_A Tropomyosin beta chain; 64.5 54 0.0018 27.4 10.0 61 205-265 14-74 (101)
41 3ghg_A Fibrinogen alpha chain; 64.4 81 0.0028 34.1 13.4 103 413-541 57-159 (562)
42 3ol1_A Vimentin; structural ge 63.5 73 0.0025 27.5 12.3 70 353-432 12-81 (119)
43 3tnu_B Keratin, type II cytosk 63.4 36 0.0012 29.8 9.1 28 446-473 35-62 (129)
44 2xdj_A Uncharacterized protein 63.3 35 0.0012 27.9 8.2 36 232-267 24-59 (83)
45 3i00_A HIP-I, huntingtin-inter 63.2 47 0.0016 29.0 9.7 57 362-438 16-79 (120)
46 3hnw_A Uncharacterized protein 62.3 86 0.0029 27.9 12.6 63 207-269 68-130 (138)
47 3ol1_A Vimentin; structural ge 61.5 58 0.002 28.2 10.0 62 203-271 37-98 (119)
48 4emc_A Monopolin complex subun 61.2 27 0.00091 32.9 8.0 61 454-541 20-80 (190)
49 1wlq_A Geminin; coiled-coil; 2 60.7 41 0.0014 27.5 8.1 47 313-378 23-69 (83)
50 2wvr_A Geminin; DNA replicatio 60.5 33 0.0011 32.6 8.6 52 313-383 100-151 (209)
51 3trt_A Vimentin; cytoskeleton, 60.1 29 0.00098 27.5 7.2 71 417-491 6-76 (77)
52 3a7p_A Autophagy protein 16; c 59.7 77 0.0026 28.8 10.6 99 422-532 30-129 (152)
53 2jee_A YIIU; FTSZ, septum, coi 59.4 71 0.0024 26.0 9.9 48 203-250 30-77 (81)
54 3m91_A Proteasome-associated A 58.8 30 0.001 25.7 6.4 39 208-253 10-48 (51)
55 3tnu_A Keratin, type I cytoske 57.6 44 0.0015 29.3 8.6 28 446-473 37-64 (131)
56 3a7p_A Autophagy protein 16; c 57.0 57 0.0019 29.7 9.2 56 205-260 73-128 (152)
57 1go4_E MAD1 (mitotic arrest de 56.7 16 0.00056 31.0 5.3 57 321-377 19-91 (100)
58 1x79_B RAB GTPase binding effe 56.5 78 0.0027 27.3 9.6 67 360-432 5-71 (112)
59 3u59_A Tropomyosin beta chain; 54.1 95 0.0033 25.9 13.8 58 208-265 38-95 (101)
60 3u1c_A Tropomyosin alpha-1 cha 53.8 98 0.0033 25.9 13.8 38 226-263 42-79 (101)
61 2efr_A General control protein 52.1 1.4E+02 0.0048 27.2 16.4 58 205-269 47-104 (155)
62 3swk_A Vimentin; cytoskeleton, 51.9 62 0.0021 26.5 8.0 32 449-480 2-33 (86)
63 3iv1_A Tumor susceptibility ge 50.2 1E+02 0.0034 25.0 8.9 59 459-534 16-74 (78)
64 2e7s_A RAB guanine nucleotide 48.8 61 0.0021 28.9 7.9 59 205-263 30-89 (135)
65 3twe_A Alpha4H; unknown functi 48.8 22 0.00075 22.3 3.5 21 245-265 4-24 (27)
66 1t2k_D Cyclic-AMP-dependent tr 47.5 45 0.0015 25.3 6.1 41 496-536 19-59 (61)
67 3oja_B Anopheles plasmodium-re 47.4 2.9E+02 0.0098 29.5 17.2 39 305-343 454-492 (597)
68 1x79_B RAB GTPase binding effe 47.2 84 0.0029 27.1 8.3 54 413-468 13-66 (112)
69 3lbx_A Spectrin alpha chain, e 46.3 1.6E+02 0.0055 26.2 13.8 82 302-385 31-119 (161)
70 1wt6_A Myotonin-protein kinase 46.2 1.2E+02 0.0041 24.7 9.1 42 228-269 31-72 (81)
71 1gk4_A Vimentin; intermediate 45.0 1.2E+02 0.0041 24.4 8.9 33 474-506 29-61 (84)
72 3mq7_A Bone marrow stromal ant 44.8 1.6E+02 0.0053 25.6 11.1 40 460-499 24-67 (121)
73 2wt7_A Proto-oncogene protein 43.8 53 0.0018 25.1 6.0 43 496-538 20-62 (63)
74 3r6n_A Desmoplakin; spectrin r 43.3 3.2E+02 0.011 28.9 21.5 88 302-389 71-161 (450)
75 4aj5_1 SKA3, spindle and kinet 43.0 1.5E+02 0.0052 25.0 10.9 43 447-489 6-60 (101)
76 3mq7_A Bone marrow stromal ant 42.8 1.4E+02 0.0049 25.8 9.0 33 237-269 73-105 (121)
77 1m1j_C Fibrinogen gamma chain; 42.5 3.1E+02 0.011 28.7 13.6 48 222-269 85-132 (409)
78 2oto_A M protein; helical coil 42.5 1.4E+02 0.005 26.6 9.8 29 204-232 26-54 (155)
79 4aj5_1 SKA3, spindle and kinet 41.9 1.4E+02 0.0048 25.2 8.6 82 164-245 5-87 (101)
80 1m1j_A Fibrinogen alpha subuni 41.0 1.4E+02 0.0047 31.9 10.3 70 474-546 96-165 (491)
81 1ci6_A Transcription factor AT 40.9 65 0.0022 24.7 6.1 41 496-536 20-60 (63)
82 3etw_A Adhesin A; antiparallel 40.3 71 0.0024 27.9 6.9 65 302-366 11-76 (119)
83 3mq9_A Bone marrow stromal ant 39.5 2.2E+02 0.0077 29.5 12.2 70 461-533 397-470 (471)
84 3cvf_A Homer-3, homer protein 39.2 1.5E+02 0.0052 23.9 9.5 49 221-269 27-75 (79)
85 2avr_X Adhesion A; antiparalle 39.0 1.9E+02 0.0067 25.1 11.7 83 458-541 6-103 (119)
86 3iox_A AGI/II, PA; alpha helix 39.0 2.3E+02 0.0078 30.5 11.8 57 411-469 7-63 (497)
87 1p9i_A Cortexillin I/GCN4 hybr 38.9 20 0.00068 23.1 2.3 23 451-473 3-25 (31)
88 3q8t_A Beclin-1; autophagy, AT 38.8 1.7E+02 0.0058 24.3 13.0 64 320-395 10-73 (96)
89 3swk_A Vimentin; cytoskeleton, 38.5 1.6E+02 0.0054 23.9 9.3 64 202-272 16-79 (86)
90 3ni0_A Bone marrow stromal ant 38.3 1.8E+02 0.006 24.4 10.4 67 460-533 17-87 (99)
91 3csx_A Putative uncharacterize 37.9 1.1E+02 0.0037 24.9 7.1 60 203-269 18-77 (81)
92 1vcs_A Vesicle transport throu 37.9 1.8E+02 0.006 24.3 9.7 45 446-490 37-93 (102)
93 2yy0_A C-MYC-binding protein; 37.7 39 0.0014 25.2 4.2 28 204-231 23-50 (53)
94 2js5_A Uncharacterized protein 37.6 72 0.0025 25.4 5.8 59 204-269 7-65 (71)
95 1ic2_A Tropomyosin alpha chain 37.4 1.6E+02 0.0053 23.5 10.9 47 218-264 31-77 (81)
96 3u06_A Protein claret segregat 37.1 62 0.0021 34.0 7.2 52 203-254 6-57 (412)
97 1deq_A Fibrinogen (alpha chain 36.3 2.3E+02 0.0078 29.5 10.9 40 151-190 60-99 (390)
98 1wt6_A Myotonin-protein kinase 36.2 84 0.0029 25.6 6.2 43 212-254 29-71 (81)
99 1go4_E MAD1 (mitotic arrest de 35.8 15 0.00051 31.2 1.8 27 412-438 18-44 (100)
100 2oto_A M protein; helical coil 35.3 2.2E+02 0.0075 25.4 9.8 51 201-251 30-80 (155)
101 4emc_A Monopolin complex subun 35.3 83 0.0028 29.6 6.9 46 38-83 20-65 (190)
102 3mq9_A Bone marrow stromal ant 35.2 3.9E+02 0.013 27.6 13.3 34 235-268 436-469 (471)
103 3sjb_C Golgi to ER traffic pro 35.1 1.4E+02 0.0049 24.8 7.6 59 329-390 24-82 (93)
104 2dq0_A Seryl-tRNA synthetase; 35.0 1.8E+02 0.006 30.9 10.5 77 205-281 36-115 (455)
105 2qyw_A Vesicle transport throu 35.0 1.7E+02 0.0057 24.5 8.3 42 446-487 48-101 (102)
106 1wlq_A Geminin; coiled-coil; 2 34.8 63 0.0022 26.4 5.2 38 447-484 38-75 (83)
107 2k48_A Nucleoprotein; viral pr 34.2 73 0.0025 27.1 5.7 26 446-471 74-99 (107)
108 2lw1_A ABC transporter ATP-bin 34.2 1.9E+02 0.0063 23.4 9.3 57 320-376 21-78 (89)
109 2dq3_A Seryl-tRNA synthetase; 33.3 1.8E+02 0.0061 30.5 10.1 77 205-281 35-114 (425)
110 2efr_A General control protein 32.8 2.8E+02 0.0096 25.1 18.6 57 405-474 97-153 (155)
111 1wle_A Seryl-tRNA synthetase; 32.8 2.1E+02 0.0072 30.8 10.7 77 205-281 75-162 (501)
112 3m91_A Proteasome-associated A 32.3 1.2E+02 0.0042 22.4 6.1 40 229-268 10-49 (51)
113 3he5_B Synzip2; heterodimeric 31.6 1.4E+02 0.0048 21.3 6.6 43 209-251 5-47 (52)
114 3mov_A Lamin-B1; LMNB1, B-type 31.4 1.2E+02 0.0039 25.3 6.6 16 456-471 14-29 (95)
115 1ci6_A Transcription factor AT 31.3 1.2E+02 0.0042 23.1 6.2 37 216-252 25-61 (63)
116 1t2k_D Cyclic-AMP-dependent tr 30.5 1.1E+02 0.0039 23.0 5.9 10 240-249 48-57 (61)
117 1t3j_A Mitofusin 1; coiled coi 29.6 1E+02 0.0035 25.9 5.9 37 459-495 52-88 (96)
118 2eqb_B RAB guanine nucleotide 29.6 2.5E+02 0.0086 23.5 8.8 52 412-463 11-67 (97)
119 3mtu_E Head morphogenesis prot 29.5 1E+02 0.0035 24.8 5.6 49 381-442 25-73 (77)
120 3nmd_A CGMP dependent protein 29.4 1.8E+02 0.006 23.2 6.9 30 240-269 38-67 (72)
121 3qne_A Seryl-tRNA synthetase, 29.3 2.4E+02 0.0081 30.3 10.3 77 205-281 38-117 (485)
122 1zxa_A CGMP-dependent protein 29.3 84 0.0029 24.7 5.0 42 228-269 11-52 (67)
123 2ic6_A Nucleocapsid protein; h 29.1 94 0.0032 25.1 5.3 27 446-472 44-70 (78)
124 4gkw_A Spindle assembly abnorm 29.1 3E+02 0.01 24.3 14.1 69 230-318 48-116 (167)
125 1jnm_A Proto-oncogene C-JUN; B 28.3 55 0.0019 24.9 3.8 41 496-536 19-59 (62)
126 3efg_A Protein SLYX homolog; x 28.0 70 0.0024 25.7 4.5 44 226-269 5-48 (78)
127 1cii_A Colicin IA; bacteriocin 27.9 2.4E+02 0.0082 30.1 9.5 37 471-507 356-392 (602)
128 3swy_A Cyclic nucleotide-gated 27.7 1.7E+02 0.0058 21.2 6.0 28 205-232 3-30 (46)
129 2xdj_A Uncharacterized protein 27.6 1.5E+02 0.0052 24.0 6.5 39 357-395 23-61 (83)
130 3swf_A CGMP-gated cation chann 27.5 2E+02 0.0068 23.0 6.9 28 205-232 5-32 (74)
131 1gd2_E Transcription factor PA 27.4 99 0.0034 24.4 5.2 18 241-258 49-66 (70)
132 2b9c_A Striated-muscle alpha t 27.1 1.3E+02 0.0045 27.0 6.7 65 459-523 50-125 (147)
133 1zxa_A CGMP-dependent protein 26.8 80 0.0027 24.8 4.4 46 447-495 11-56 (67)
134 1ses_A Seryl-tRNA synthetase; 26.7 2.1E+02 0.0071 30.0 9.2 77 205-281 33-110 (421)
135 3tul_A Cell invasion protein S 26.5 3.6E+02 0.012 24.3 10.1 104 203-326 23-126 (158)
136 4etp_A Kinesin-like protein KA 26.3 1.3E+02 0.0045 31.3 7.5 47 205-251 8-54 (403)
137 2w6b_A RHO guanine nucleotide 26.0 1.9E+02 0.0065 21.7 6.1 41 224-268 6-46 (56)
138 3sja_C Golgi to ER traffic pro 26.0 2.3E+02 0.008 22.0 6.9 50 327-376 5-54 (65)
139 1abz_A Alpha-T-alpha, ATA; de 25.3 23 0.00079 24.1 0.9 31 432-463 4-37 (40)
140 1ik9_A DNA repair protein XRCC 25.2 2.8E+02 0.0097 26.3 9.0 85 350-470 114-198 (213)
141 3qne_A Seryl-tRNA synthetase, 25.1 2.6E+02 0.009 29.9 9.7 68 364-432 36-104 (485)
142 1lwu_C Fibrinogen gamma chain; 24.8 1.3E+02 0.0043 30.7 6.8 23 230-252 28-50 (323)
143 4fi5_A Nucleoprotein; structur 24.3 1.2E+02 0.0042 26.1 5.5 59 415-473 24-88 (113)
144 2xu6_A MDV1 coiled coil; prote 24.0 1.7E+02 0.006 23.2 5.9 51 205-255 19-69 (72)
145 2ic9_A Nucleocapsid protein; h 23.8 1.3E+02 0.0045 25.2 5.5 28 446-473 44-71 (96)
146 1g6u_A Domain swapped dimer; d 23.8 1.9E+02 0.0066 20.3 5.7 28 250-277 21-48 (48)
147 3oja_A Leucine-rich immune mol 23.7 6.2E+02 0.021 26.1 19.8 33 412-444 366-398 (487)
148 3a7o_A Autophagy protein 16; c 23.2 2.8E+02 0.0096 21.9 8.3 58 212-269 16-73 (75)
149 2nrj_A HBL B protein; enteroto 22.5 6.1E+02 0.021 25.6 19.7 68 204-271 120-191 (346)
150 3nmd_A CGMP dependent protein 22.3 1.9E+02 0.0067 22.9 5.9 17 487-503 21-37 (72)
151 2wt7_A Proto-oncogene protein 21.9 2.3E+02 0.0078 21.4 6.2 11 240-250 49-59 (63)
152 2dq0_A Seryl-tRNA synthetase; 21.7 3.4E+02 0.012 28.7 9.7 70 362-432 32-102 (455)
153 2yy0_A C-MYC-binding protein; 21.6 77 0.0026 23.6 3.3 33 38-70 19-51 (53)
154 1m1j_B Fibrinogen beta chain; 21.1 7.6E+02 0.026 26.2 13.9 57 413-470 135-191 (464)
155 2avr_X Adhesion A; antiparalle 21.0 3E+02 0.01 23.9 7.4 15 302-316 11-25 (119)
156 1m1j_C Fibrinogen gamma chain; 20.5 7.4E+02 0.025 25.8 12.5 45 303-347 23-67 (409)
157 3cve_A Homer protein homolog 1 20.3 3.2E+02 0.011 21.6 9.8 40 229-268 29-68 (72)
158 3vmx_A Voltage-gated hydrogen 20.3 2.6E+02 0.0089 20.5 5.9 38 214-251 4-41 (48)
159 3d5a_X RF1, peptide chain rele 20.2 5.3E+02 0.018 26.5 10.3 46 331-376 6-51 (354)
160 3v86_A De novo design helix; c 20.0 1.2E+02 0.0042 18.9 3.4 21 458-478 4-24 (27)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.26 E-value=0.0037 Score=60.12 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
+...++.++.....+..++..+...+......+..+...+..+...+..++..+
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333344444444444444444444444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.87 E-value=0.021 Score=54.69 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008671 240 DKAKLNRLKGELESAVKEL 258 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~el 258 (557)
...++..+...++.+...+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~ 64 (284)
T 1c1g_A 46 LQKKLKATEDELDKYSEAL 64 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.73 E-value=6.7e-05 Score=89.82 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 008671 92 LITDLESC 99 (557)
Q Consensus 92 L~ddl~lL 99 (557)
+.+-|+|.
T Consensus 709 vlE~iri~ 716 (1184)
T 1i84_S 709 VLEGIRIC 716 (1184)
T ss_dssp HHHHHHHH
T ss_pred chHHHHhH
Confidence 34555553
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.33 E-value=0.0078 Score=57.26 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=95.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA--WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~--rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere 430 (557)
.+.|......+.+|+..+.+|+..++.++.+-+.|. .++.|..|..|. ..++.+..+|...+.++..+.+
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL--------~~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL--------VQAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999998 333344222222 1224667777777777777777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhH
Q 008671 431 RIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSAD 510 (557)
Q Consensus 431 ~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~ 510 (557)
.++.++. .+..|.-..+++|++++.+|......++..--++.-...+++....+...+.. .+..|++.
T Consensus 74 ~~k~K~~---------~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle---D~e~kln~ 141 (189)
T 2v71_A 74 ALKEKLE---------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE---DFEQRLNQ 141 (189)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---HHHHHHHH
Confidence 7777775 44556666788888888888888777765555555555555444444443332 22223332
Q ss_pred HH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHccC
Q 008671 511 QV----------AEIHKLQAMVQDLTDSNLELKLILDMYRRE 542 (557)
Q Consensus 511 ~~----------~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e 542 (557)
-+ .+-..|+..++-|++.-.+|+.=+.+..+-
T Consensus 142 aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~~~ 183 (189)
T 2v71_A 142 AIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQ 183 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 233344555566777777777666665543
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.40 E-value=4.2 Score=39.96 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 211 ~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.|......|.+....+..++..+.+.+....+++..++.++..+..++...+.++.+.+
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444555555555555555555555555555555
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.37 E-value=2.4 Score=39.37 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH--HhcCC
Q 008671 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE--ASREP 443 (557)
Q Consensus 366 lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq--a~~~~ 443 (557)
|..+++++... |++|-++..|.-+-. .|+... ....+.-+.+|.+.+..+.+.+++|.-++-. +.=+.
T Consensus 11 LekQL~E~n~k---Lk~EsE~~~rlkK~~------tEl~k~-~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 11 LQKQLEEANDL---LRTESDTAVRLRKSH------TEMSKS-ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp THHHHHHHHHH---HHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666 788888886542222 223333 2234677888888888888888888888877 33334
Q ss_pred CchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 444 GRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (557)
Q Consensus 444 ~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~ 495 (557)
+ +.....+-.+|.-++.+|..|..+|.|.|+.-+-+..=+..++.--..|+
T Consensus 81 E-r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 81 E-RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55667777888888999999999998887755555444444444334444
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.96 E-value=2.4 Score=41.71 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=19.6
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
+..++..+|+.+..+....+.+...++.
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777787777777777777655544
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.88 E-value=17 Score=47.73 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 310 KELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAW 389 (557)
Q Consensus 310 eE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~r 389 (557)
.++.+-.+.-..+|.+.+.+...+..++..|+.++... +.+-..|+.+.+..+..++++..++..|-.|+.-+..
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~-----~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATL-----IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 33333333334556666667777777777777665422 4467788999999999999999999999999986655
Q ss_pred H
Q 008671 390 R 390 (557)
Q Consensus 390 q 390 (557)
+
T Consensus 2092 ~ 2092 (3245)
T 3vkg_A 2092 Q 2092 (3245)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.73 E-value=6.8 Score=37.07 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 304 DMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVE 383 (557)
Q Consensus 304 eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~e 383 (557)
+|+++++.-...+.+|..+|. ..+..+..+++.++.+ |...+.++.. +.-.+...+..|+..
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~---~~~~~L~~E~e~~k~K------------~~~~~~e~~~---~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQ---ADNQRLKYEVEALKEK------------LEHQYAQSYK---QVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH------------HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH------------HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 455555555555555544433 3444455555555544 3333333222 233444445556666
Q ss_pred HHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 384 KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 384 r~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
+..+..++|++-..++--|-+.|.+. +.+.++|..|-++.-.--+|..++++
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~---~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATI---MSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666555555555566654 88999999999999888888888875
No 10
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.58 E-value=5.4 Score=35.43 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=32.9
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQR 468 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ 468 (557)
+..|++|+.++--+-++.++...+++-. +...+|=+.=|.-++++|..-+-
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL~iV------gkML~EEqgKVDQlqKRn~~HQK 60 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEELEIV------GNMLREEQGKVDQLQKRNVAHQK 60 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHhccHHHH
Confidence 5678899998888888888877777652 23344444445555555544433
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.44 E-value=4.4 Score=37.60 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKY------------------KEAALDIHILRADVLSLTNVLERKVKECETLLASS 508 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~------------------kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~ 508 (557)
..++|++..+..|+++-.+|+.++..+ +|....+..|..++..++.-+.+-..+-+.|.+++
T Consensus 48 ~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 48 SLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888887777777777666333 56666777777777777777776666777777776
Q ss_pred hHHHHHHHH
Q 008671 509 ADQVAEIHK 517 (557)
Q Consensus 509 ~~~~~~i~~ 517 (557)
...-.+..+
T Consensus 128 ~~lEKe~a~ 136 (168)
T 3o0z_A 128 NHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655444433
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.78 E-value=6.5 Score=46.62 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=35.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+.++..++..+.+..++++.|+.+..+.. .++...|++|.+++..|+.++..+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~---------~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK---------HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777755554432 366677777777777777766444
No 13
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.51 E-value=4.3 Score=35.71 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhc
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN-MKID 399 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~-~k~E 399 (557)
..++.|..++..+..+++.++++-. +.-..|+.|+..|++++++.|.+..+...+-+.++-.. +.. ....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~-~~l~~~~~ 85 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL-DELRRQRE 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 3455566666666667777665522 23347888999999999999988666666666555442 321 1112
Q ss_pred hHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHH
Q 008671 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (557)
Q Consensus 400 ~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~ 433 (557)
..+-+.+....++.+....|..+.++..-|..|+
T Consensus 86 ~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 86 DTEKAQRSLSEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp ----------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222333334456777778888888888777764
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.51 E-value=52 Score=43.49 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=10.3
Q ss_pred ccchhHHHHHHhhHHHH
Q 008671 76 QPYDSTLKVVNKSWEEL 92 (557)
Q Consensus 76 ~~~D~~L~~Vnr~W~QL 92 (557)
.+|-=+|+-+.|||.-+
T Consensus 1507 ~HY~FnLRDLsrv~qGl 1523 (3245)
T 3vkg_A 1507 AHYIYSPRELSRWDRAL 1523 (3245)
T ss_dssp TTCCCCHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHH
Confidence 34555667777766554
No 15
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.45 E-value=10 Score=32.63 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+.+|...+..+.++-+....+.++|.++.......+ .++++|+++++-|+.. ..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------------------E~I~vLkaQv~IY~~D---F~ 79 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------------------ETVPVLKAQADIYKAD---FQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------THHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH---Hc
Confidence 788988888888888887777777777655533333 2356677777777777 45
Q ss_pred HHHH
Q 008671 382 VEKD 385 (557)
Q Consensus 382 ~er~ 385 (557)
+||.
T Consensus 80 aERa 83 (110)
T 2v4h_A 80 AERH 83 (110)
T ss_dssp HHHH
T ss_pred cchh
Confidence 5553
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.91 E-value=9.3 Score=31.94 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHH-----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKS-----LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~-----ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrK 264 (557)
.|..+|+.|...+..++.+... |..++..++..+.....+...|..+++.++.+++..+.|
T Consensus 27 ~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 27 FLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666677777666666654332 345555555555555556666666666666665555554
No 17
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.92 E-value=23 Score=30.69 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 008671 325 GLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVF 404 (557)
Q Consensus 325 ~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~ 404 (557)
+|+..+..|.-+++.++.++. ..+.. ...+.-.++.++.+|+.++..+...+|++-++++--|=+
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~------------~~~~e---~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLE------------HQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 455566667777777776533 22222 122233344455556666777766656665555555555
Q ss_pred HhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 405 RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 405 ~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
.|.+. +.+.++|..+-+.+-.--.|..|+.+
T Consensus 72 ~R~t~---~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 72 KRATI---VSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 79999999999998888888888765
No 18
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.56 E-value=9.9 Score=31.97 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cccccChhHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-----KCLSSSKAFLSVKNQLEK 365 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-----~~I~~S~~Yk~L~~Q~~~ 365 (557)
.+.++.++..++.--+.-+.||.++..+...+..++..++.+.... .|.+ .|..++-|+-.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~---eyn~~~~ql~e 71 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR---EYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHH
Confidence 5678888888888888889999999999999999999998886622 4444 45555544444
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.11 E-value=24 Score=30.49 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=62.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~ 491 (557)
+.+..+|-....++..|+|.++.++.+.. .|--..+++||+++.+|...-..++..--++.-...+++-..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~---------~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQY---------AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 56788899999999999999999998743 333456677777777776666555444333333333322222
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 008671 492 NVLERKVKECETLLASSADQVAEIHKLQAMVQ 523 (557)
Q Consensus 492 ~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~ 523 (557)
.+.. .-+..+..|++..+-.+.-|..++.
T Consensus 73 R~t~---~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 73 RATI---VSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1244566677777666666666554
No 20
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=80.75 E-value=20 Score=31.34 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=54.6
Q ss_pred hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhH-------------HHHHHHHHHHHH
Q 008671 457 SSFPEDMSAMQRQLSKY-KEAALDIHILRADVLSLTNVLERKVKECETLLASSAD-------------QVAEIHKLQAMV 522 (557)
Q Consensus 457 sSlq~~~~~Lk~ev~R~-kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~-------------~~~~i~~l~~~~ 522 (557)
+++-++..+|+.+++++ +.-.......++..+.....|.....--..+.+|.+. .-.-++..+...
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45566777777777666 4445555556666565555555554433344443222 345567777778
Q ss_pred HHHhhhHHHHHHHHHHHcc
Q 008671 523 QDLTDSNLELKLILDMYRR 541 (557)
Q Consensus 523 ~~l~~~~~eL~l~ldmy~~ 541 (557)
..|..+-+..+-|+|.|..
T Consensus 85 keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999865
No 21
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.17 E-value=11 Score=30.90 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+.+|..|-.=|.+..++|..|-++++.|+. .+..++.+++++|.+++..|
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~e-------------------Ei~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDN-------------------EIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 558999999999999999888888877554 45678888999999876665
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.11 E-value=33 Score=30.11 Aligned_cols=114 Identities=9% Similarity=0.105 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCC
Q 008671 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL 285 (557)
Q Consensus 206 ~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~ 285 (557)
..|...+...+..|..++.........+......+..++..|..+|..-+.-+..+.-++.+|...+.-.-
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe--------- 82 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE--------- 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence 45666777777777777777777777778888888888888888888877777777777777764432211
Q ss_pred CCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008671 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (557)
Q Consensus 286 ~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~ 342 (557)
. .+.++...+++.....+.=..+-.++..+...+.++++.+..
T Consensus 83 -------------~-~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 83 -------------A-KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp -------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 145555566665555554444555555555555555555443
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.12 E-value=11 Score=31.85 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE-CNCKLAALR 269 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek-~rrKL~~l~ 269 (557)
.+..++..|+..+..+......+..++..-+......+.++..+..+||++++-|.. +++-.+.++
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888888899999999999999999999998853 444333333
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.83 E-value=40 Score=36.46 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------cccccccChhHHHHHHHHHHHHH
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK------------SVKCLSSSKAFLSVKNQLEKSKS 368 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~------------d~~~I~~S~~Yk~L~~Q~~~lka 368 (557)
++|+..+..+++-..+.+..|..|+.-+.++..++++|.+++. ..+|-..-.-|..+|.|+..+.+
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 5888888888888888999999999999999999999988754 22555666688888888887433
No 25
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.75 E-value=9 Score=30.67 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhH
Q 008671 458 SFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSAD 510 (557)
Q Consensus 458 Slq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~ 510 (557)
.+..+|..|+..|..+ -+++++-..++.++..+..+|+-|+.|+.+|.+.+++
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566788888888555 6788888889999999999999999998888777665
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.48 E-value=11 Score=44.82 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=39.5
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHH----HHHHHHHHHHHHHhhhHHH
Q 008671 456 VSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQV----AEIHKLQAMVQDLTDSNLE 531 (557)
Q Consensus 456 isSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~----~~i~~l~~~~~~l~~~~~e 531 (557)
++.|++.+..|+........+...+..+..++..+...+.+-..|.+.+..++..-. ..+..|+.+...|++...+
T Consensus 962 ~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555566666666666666666666555544432221 3334445555555555555
Q ss_pred HH
Q 008671 532 LK 533 (557)
Q Consensus 532 L~ 533 (557)
|.
T Consensus 1042 l~ 1043 (1080)
T 2dfs_A 1042 LN 1043 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.19 E-value=39 Score=30.88 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=19.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
.+...||++|...|++-+-....+.+
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~ 38 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIEN 38 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899998888887765554443
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.98 E-value=23 Score=28.54 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
|..+..+....+..+..+.+............+..+..++..|+++|+.+.-.+..+..+|...
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777766666666666677777777777777777777777777776544
No 29
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.96 E-value=10 Score=30.89 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhH
Q 008671 458 SFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSAD 510 (557)
Q Consensus 458 Slq~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~ 510 (557)
.+..+|..|+..|..+ -+++++-..++.++..+..+|+-|+.|+.+|.+.+++
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556677777777554 6788888889999999999999999998888877765
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.67 E-value=18 Score=32.38 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHHhccHHHHHHHHHH--HHHH----------HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHH-----
Q 008671 449 IAEFRALVSSFPEDMSAMQRQ--LSKY----------KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQ----- 511 (557)
Q Consensus 449 ~~Emr~LisSlq~~~~~Lk~e--v~R~----------kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~----- 511 (557)
-..|+.++.-+..+|..+.+. -.++ =..+.|+.+++.+...+...++.+..|+..|-..+.+.
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888743 3222 33677788888888888888888777777665444444
Q ss_pred --HHHHHHHHHHHHHHhhhHHHHH
Q 008671 512 --VAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 512 --~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
..++..|+..+..|+....+|+
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.71 E-value=31 Score=37.19 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 008671 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477 (557)
Q Consensus 414 ~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~ 477 (557)
++.+.+..++..+.+-+..+..++....+.. .....+...+..+..+...+..++++.+.+.
T Consensus 471 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA--RSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCccccccC--CHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 3344444444444444433333332222222 2334455555555556666666666665544
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.52 E-value=25 Score=29.66 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
|..+..+....+..+..+.+..-.........++.+..++..++++||.+...|..+..+|
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666665555555555566666666666666655555555554
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.61 E-value=42 Score=29.35 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=9.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L 432 (557)
+.++.++..++++.-.+|.+|
T Consensus 88 E~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 88 EEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 34
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=69.51 E-value=57 Score=28.45 Aligned_cols=90 Identities=9% Similarity=0.118 Sum_probs=52.7
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 008671 409 AVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILR 484 (557)
Q Consensus 409 ~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~----kea~~e~~~lr 484 (557)
+.+...+...+..|..+...+++....+............+..+...+..|...|...+.+|... -.+...+...+
T Consensus 29 ~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~ 108 (150)
T 3ajw_A 29 GEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKK 108 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356777777888888877777765554433222212345677778888888888888887444 22333444444
Q ss_pred HHHHhHHHHHHHhh
Q 008671 485 ADVLSLTNVLERKV 498 (557)
Q Consensus 485 ~e~~sl~~~l~~k~ 498 (557)
.++.++..+.+++.
T Consensus 109 ~~~k~~e~L~er~~ 122 (150)
T 3ajw_A 109 QRLQAWQTLQDRQT 122 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 35
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.74 E-value=19 Score=26.91 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=33.9
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
|-..|+.+++.|-.++..+.+++.-|+..+..+..|-.+++.|||.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344566666666666667778888888888888888899888874
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.68 E-value=30 Score=28.26 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008671 240 DKAKLNRLKGE 250 (557)
Q Consensus 240 ~e~e~~eL~~~ 250 (557)
+..++.+|+.+
T Consensus 53 L~~en~qLk~E 63 (81)
T 2jee_A 53 LERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.21 E-value=39 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008671 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (557)
Q Consensus 307 ~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~ 342 (557)
..+++++..+..--..|...+.+...+...++.|+.
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 52 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEI 52 (131)
T ss_dssp ------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444444444444444444444444444
No 38
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.18 E-value=31 Score=28.02 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ 381 (557)
+.+|.+|-.=|.+..++|..|-++++.++..+ ..|+.....++..+++.+.+++-|+
T Consensus 19 k~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi------------~~LkeEN~~L~el~~~~~~laevl~ 75 (79)
T 2zxx_A 19 KEVAEQRRKALYEALKENEKLHKEIEQKDSEI------------ARLRKENKDLAEVAEHVQYMAEVIE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999998888764 3567777777777777777766554
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.03 E-value=50 Score=34.32 Aligned_cols=45 Identities=29% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCCCc
Q 008671 502 ETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDS 546 (557)
Q Consensus 502 ~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~~d~ 546 (557)
.-|-.+...|+..|+.|+..|+++..+-+-|..-+|.+.+-|+-+
T Consensus 123 ~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~s 167 (390)
T 1deq_A 123 EILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGS 167 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345667888899999999999999999999999889888866544
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.46 E-value=54 Score=27.43 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
|..+..+....+..+..+.+..-.......+.+..+..++..|+++++.+...+..+..+|
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555554444444444444455555555555554444444444444
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.39 E-value=81 Score=34.14 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=55.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTN 492 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~ 492 (557)
.+=.++-..|..+|..|+++.- + .+.+..-++.+...|+.+..+-...-..|-+...| ||...+
T Consensus 57 kqErDltkrINELKnqLEdlsK----n-----sKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~E---LRRrIq---- 120 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQK----N-----NKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSED---LRSRIE---- 120 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH----H-----HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHH---HHHHHH----
T ss_pred hhcCcHHHHHHHHHHHHHHHHh----h-----chhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH---HHHHHH----
Confidence 4444555566666666666611 1 14555666777777776666666333444443333 233322
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Q 008671 493 VLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (557)
Q Consensus 493 ~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~ 541 (557)
.|-.+...|+..|+.|+..|+++..+-+-|..=+|+=-+
T Consensus 121 ----------yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 121 ----------VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555566666666666666666666665555444
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.52 E-value=73 Score=27.51 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 353 S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
|..|.....++..++.+++.....-.+|+.+.+......-++..|-| .|+..+ ..+|.++..+|++-|..
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE-~E~~~r---------~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ-EEMLQR---------EEAENTLQSFRQDVDNA 81 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHH---------HHHHHHHHHhhhcccHH
Confidence 44556666666666666666666555566666555433212222222 122222 23456666666655543
No 43
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.42 E-value=36 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+.-+.|+|..|.+|+.++..|++...-+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566777777777777777777765444
No 44
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.32 E-value=35 Score=27.94 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008671 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (557)
Q Consensus 232 ~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~ 267 (557)
.++..+..++.+|..|.|++|+..+++....++-..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355566669999999999999999999999886533
No 45
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.25 E-value=47 Score=28.98 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHH-------HHHHHH
Q 008671 362 QLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDE-------KNRIEM 434 (557)
Q Consensus 362 Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~e-------re~L~~ 434 (557)
++.+|+-+++.+|..++.+..|- ++.+..++.+|.+||.+|+..|+. .+.|+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~--------------------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES--------------------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655554433 333333457888888888776655 555666
Q ss_pred HHHH
Q 008671 435 RLEE 438 (557)
Q Consensus 435 e~eq 438 (557)
+++.
T Consensus 76 e~~~ 79 (120)
T 3i00_A 76 ELDE 79 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.31 E-value=86 Score=27.91 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 207 ~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.|.-.++..+..|...-..+..++..+...+...+.++..+..++++++.++...++++.+|.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666666666666666777777777777777777777777666664
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.49 E-value=58 Score=28.16 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
..|..++.+++..++++..|+..-. .....++.++..|+..++++..--...+.++..|+.|
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~-------~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666654432 2344467777777777777776666666666666643
No 48
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=61.23 E-value=27 Score=32.93 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=36.4
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 454 ALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 454 ~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
.||+.|+.+|..|..++. ....||..|+.++.+++.... .++.. +.+......
T Consensus 20 ~LV~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~---------------------~~~~~---~~~~~e~i~ 72 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVK---------------------ELKTQ---TSQQAENSE 72 (190)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------------------HHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh---------------------hhhhH---HHHHHHhhh
Confidence 466777777777766663 555666666666666554442 22221 234556678
Q ss_pred HHHHHHcc
Q 008671 534 LILDMYRR 541 (557)
Q Consensus 534 l~ldmy~~ 541 (557)
+++|||.-
T Consensus 73 i~~DL~e~ 80 (190)
T 4emc_A 73 VIKDLYEY 80 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 49
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=60.66 E-value=41 Score=27.50 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~e 378 (557)
+.+|.+|-.-|.+..++|..|-++++.++.+ +..++.++.+++.+++
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eE-------------------i~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSE-------------------IARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 4579999999999999988888888776544 5567777777777753
No 50
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=60.48 E-value=33 Score=32.56 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVE 383 (557)
Q Consensus 313 ~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~e 383 (557)
+.+|..|-.=|.+..+||..|-++++.++ ..+..|+.++++++.+++.+|.-
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~ie~l~-------------------eEi~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKEIEQKD-------------------NEIARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999888888888877744 45667888889999886655543
No 51
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.12 E-value=29 Score=27.46 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (557)
Q Consensus 417 ~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~ 491 (557)
+|-.-|+.||..||.+-...-.-....= ..-..|+...+..-...+...+.|+ .+...-|.+|..++++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y-~~k~eel~~~~~~~~~~l~~~k~Ei---~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWY-KSKFADLSEAANRNNDALRQAKQES---TEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.73 E-value=77 Score=28.82 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 422 IQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE 500 (557)
Q Consensus 422 Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e 500 (557)
|+.--..|+.+...|-.....+.. .+-+ +||..+ .+.........++..++.++..+...+..|.+-
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~-----~vs~~~-------~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~ 97 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIGGN-----IVSHDD-------ALLNTLAILQKELKSKEQEIRRLKEVIALKNKN 97 (152)
T ss_dssp ---------------------------CH-----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcc-----cccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556677777777665444443 1111 333322 223334555566666666666667777777766
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHH
Q 008671 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLEL 532 (557)
Q Consensus 501 ~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL 532 (557)
+..|.|=+..--.+.+.+...+.+|+.++.+|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777777777766665
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.44 E-value=71 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGE 250 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~ 250 (557)
.+|+.+|..|......+...+..+..+...+++.+..-+.++.-|=|.
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555544444445555555444444444444444433
No 54
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.79 E-value=30 Score=25.75 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELES 253 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~ 253 (557)
....|+..+..|-+++..|..-+.. .+.++..|+++|+.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~-------AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKE-------ARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3456788888888888888888887 55555555555554
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.58 E-value=44 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+.-+.|+|..|.+|+.++..+++....+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sL 64 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASL 64 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3456677777777777776666665444
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.05 E-value=57 Score=29.68 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE 260 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek 260 (557)
|..|...|+..+..|....+.-..-+..++|.+..++.+...+++.+..++.|...
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333333344444455555555555555444444444433
No 57
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.71 E-value=16 Score=30.99 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc------c-----cccccC-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKS------V-----KCLSSS-----KAFLSVKNQLEKSKSEVFKYQALF 377 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d------~-----~~I~~S-----~~Yk~L~~Q~~~lkaeld~~R~l~ 377 (557)
.+++.|..++..|.+++..|.++|.. . .|++=+ ..|+..+..+..|.++++++|..+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888887777653 1 344322 266666666666777777666664
No 58
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.53 E-value=78 Score=27.33 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 360 ~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
.+|...|.+++.+++..++++.++|+.+-....+. .+-+.....++..++..-|..|..++..+-..
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k------~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQS------SEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888887775332111 11122222233455555666665555555444
No 59
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.12 E-value=95 Score=25.87 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 208 E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.+..+...+..|+-|...+..++..+.+.+......+..-.....++..+..-..||+
T Consensus 38 ~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 38 RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444444444444444444444444444444444
No 60
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.81 E-value=98 Score=25.91 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=15.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008671 226 LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (557)
Q Consensus 226 ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rr 263 (557)
.-.++..++-++..++.++...+..|.++...|+...+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444
No 61
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=52.12 E-value=1.4e+02 Score=27.18 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
|..+...+-.-+..|....-.++.+-.. .+.+|+.|...|.++..+.+-+.|++..|.
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~-------yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDK-------YEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443444444444444444444444 777888888888888888888887776665
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.86 E-value=62 Score=26.46 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=21.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 008671 449 IAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480 (557)
Q Consensus 449 ~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~ 480 (557)
++++|.-|.++..+++.|..|+..++.+..+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777776665554443
No 63
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.18 E-value=1e+02 Score=24.97 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008671 459 FPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKL 534 (557)
Q Consensus 459 lq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l 534 (557)
++..+.+.++|+.-+|-++.|+..=...++.+-.-|+ .+-.++...|..|+..+.||.-
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~-----------------~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD-----------------QEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655554433322222 2336677778888888888753
No 64
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.82 E-value=61 Score=28.91 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE-CNC 263 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek-~rr 263 (557)
+..+.+.|...+..+......+..++..-+.....++.++..+..+||++++-|.. +++
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~ 89 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 89 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666677778888888888888889999999999999999999998864 444
No 65
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.80 E-value=22 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 008671 245 NRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 245 ~eL~~~LE~~~~elek~rrKL 265 (557)
.+|-.+|||++.++.+.|+||
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999987
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.46 E-value=45 Score=25.25 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=34.6
Q ss_pred HhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 496 RKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 496 ~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
+|...+..|..+...-..++..|+..|..|+.+...|+-+|
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778888888888899999999999999999988765
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.45 E-value=2.9e+02 Score=29.46 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008671 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (557)
Q Consensus 305 L~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~ 343 (557)
+++++.+.......-..++............++...+..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333444444333333344444444444444444444443
No 68
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.17 E-value=84 Score=27.13 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=29.5
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQR 468 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ 468 (557)
....++..+|.+.+.++.+|...+.+..++.. +-+.++..-+..=......|++
T Consensus 13 ~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k--~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 13 LMLRQANDQLEKTMKDKQELEDFIKQSSEDSS--HQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777666555443 3444444433333333333333
No 69
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=46.25 E-value=1.6e+02 Score=26.18 Aligned_cols=82 Identities=7% Similarity=0.055 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cccccccChhHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK-------SVKCLSSSKAFLSVKNQLEKSKSEVFKYQ 374 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~-------d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R 374 (557)
...|....+.+...+..|..-|+... ........+..+..=+. +.+| .....-..+..+++.+.+++....
T Consensus 31 ~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~~~a~~~~~-~d~~~v~~ll~kH~afe~El~a~~ 108 (161)
T 3lbx_A 31 RQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKS 108 (161)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999887 66666666666543322 3344 444455556666677777777777
Q ss_pred HHHHHHHHHHH
Q 008671 375 ALFEKLQVEKD 385 (557)
Q Consensus 375 ~l~ekLQ~er~ 385 (557)
.-++.+...-.
T Consensus 109 ~~~~~l~~~g~ 119 (161)
T 3lbx_A 109 RLMSELEKTRE 119 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 70
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.25 E-value=1.2e+02 Score=24.68 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=19.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.++...+...-..++++++-+..-.++..++.+.+.++..|+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444555555555555554
No 71
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.98 E-value=1.2e+02 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHh
Q 008671 474 KEAALDIHILRADVLSLTNVLERKVKECETLLA 506 (557)
Q Consensus 474 kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~ 506 (557)
++++..|..+..++..++.-+.+...|-..|.+
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666665555555555555554443
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.77 E-value=1.6e+02 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhh
Q 008671 460 PEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVK 499 (557)
Q Consensus 460 q~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~ 499 (557)
+|-.+-|+.++.+- +++...+..+..-|..|+.-|+++.-
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka 67 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666776444 67777778888888888888876553
No 73
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.79 E-value=53 Score=25.12 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=36.0
Q ss_pred HhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008671 496 RKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDM 538 (557)
Q Consensus 496 ~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldm 538 (557)
+|...+..|.++...-..++..|+..|..|+.....|+.+|..
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888888888889999999999999999999988753
No 74
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=43.35 E-value=3.2e+02 Score=28.85 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cccccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK---SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~---d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~e 378 (557)
+..|...++++.+++..|...|+.|++=+..+..+..=++-+-. ..++-..-.-...++..|+.++++++-....+.
T Consensus 71 ~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~ 150 (450)
T 3r6n_A 71 IYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELN 150 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHH
Confidence 56788999999999999999999888777777777666655422 112111111244677888888899888888877
Q ss_pred HHHHHHHHHHH
Q 008671 379 KLQVEKDNLAW 389 (557)
Q Consensus 379 kLQ~er~~~~r 389 (557)
.++..-..++.
T Consensus 151 ~v~~~G~~Li~ 161 (450)
T 3r6n_A 151 KLKQESDQLVL 161 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 75
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=43.03 E-value=1.5e+02 Score=25.02 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHh
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLS------------KYKEAALDIHILRADVLS 489 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~------------R~kea~~e~~~lr~e~~s 489 (557)
....-+|+|+.+|.++-.+|+.-+. =|.+-.+|+..|+.++..
T Consensus 6 ~Ff~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~ 60 (101)
T 4aj5_1 6 SFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999888876542 225566666666666543
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.79 E-value=1.4e+02 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 237 ~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+..++-+|+.|..+|.++.++++..|+.-..+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 333666666677777777777777666554443
No 77
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.49 E-value=3.1e+02 Score=28.68 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=31.8
Q ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 222 khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+.+.|..++..++..+...++.+..|++.|+.....+.....++..+.
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444555555555566666777777777777777777777666666654
No 78
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=42.48 E-value=1.4e+02 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQS 232 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~ 232 (557)
.+..+|..|+.....+......+-.....
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~e 54 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEE 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555555555555444443333333333
No 79
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=41.87 E-value=1.4e+02 Score=25.22 Aligned_cols=82 Identities=16% Similarity=-0.008 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhh-hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Q 008671 164 KNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQK-ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKA 242 (557)
Q Consensus 164 k~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~-~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~ 242 (557)
.++.++|-...-.+-.-...|-++|.+..++....+. +--+|..|+..|-..+..++.|++.-+.++....-..-.+..
T Consensus 5 ~~Ff~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~ 84 (101)
T 4aj5_1 5 RSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLME 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444333333333333445566653222222222 445788899999999999999999998888887766666665
Q ss_pred HHH
Q 008671 243 KLN 245 (557)
Q Consensus 243 e~~ 245 (557)
++.
T Consensus 85 rns 87 (101)
T 4aj5_1 85 KNS 87 (101)
T ss_dssp HHH
T ss_pred HhH
Confidence 543
No 80
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.00 E-value=1.4e+02 Score=31.88 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCCCc
Q 008671 474 KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDS 546 (557)
Q Consensus 474 kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~ldmy~~e~~d~ 546 (557)
|..+..+...-.-+-.....|+++. .-|-.+...++..|+.|+..|+++..+-+-|..-++.=...|..|
T Consensus 96 k~~~~q~~dndn~~~e~S~eLe~ri---~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~p 165 (491)
T 1m1j_A 96 KPGLEGAQQLDENYGHVSTELRRRI---VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHhhhccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4444444444444444455555554 345567888899999999999999999999988887765554443
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.93 E-value=65 Score=24.69 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=33.9
Q ss_pred HhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 496 RKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 496 ~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
+|..++..|..++..-..++..|+..|..|+.+..-|+-+|
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888888999999999998888887665
No 82
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=40.31 E-value=71 Score=27.87 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccccChhHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKS 366 (557)
Q Consensus 302 ~~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~-~~I~~S~~Yk~L~~Q~~~l 366 (557)
+.-|+.+++-+...=.-|..+.+..-+.-...+.+...|+..+.+- ..|..+..++..+++|.-+
T Consensus 11 l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l 76 (119)
T 3etw_A 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQEL 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 5556666655555555555554444444444444444444443322 3333333333444444443
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.49 E-value=2.2e+02 Score=29.50 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 461 EDMSAMQRQLSKYKE----AALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 461 ~~~~~Lk~ev~R~ke----a~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
+-..-|+.+|.++++ +...++.+..-|--|..-|++|+.... .|.-++-.+|+.|...++.+.-..++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555555532 334445555566667777887775422 3556666666666666666655555543
No 84
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.22 E-value=1.5e+02 Score=23.93 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 221 LKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 221 ~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.+-+.+-..+...+......+++++.+-+.|+---.+|-..|..|++|-
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3333334444444555555777777777777777777777777776653
No 85
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=39.01 E-value=1.9e+02 Score=25.10 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHH----------HHHHHhhhhhHHHHhh---hhHHHHHHHHHHHHH
Q 008671 458 SFPEDMSAMQRQLSKY--KEAALDIHILRADVLSLT----------NVLERKVKECETLLAS---SADQVAEIHKLQAMV 522 (557)
Q Consensus 458 Slq~~~~~Lk~ev~R~--kea~~e~~~lr~e~~sl~----------~~l~~k~~e~~~l~~~---~~~~~~~i~~l~~~~ 522 (557)
+.-+++.+|+.+++++ +|-+ .-...++.++++. .-++.+...+....+. -...-.-++..+...
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~q-rynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~ 84 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEA-RFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3445566666666555 2211 1333333333333 3333444444443332 222345567777788
Q ss_pred HHHhhhHHHHHHHHHHHcc
Q 008671 523 QDLTDSNLELKLILDMYRR 541 (557)
Q Consensus 523 ~~l~~~~~eL~l~ldmy~~ 541 (557)
.+|..+-.+.+-|+|+|..
T Consensus 85 ~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 85 KKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999864
No 86
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.98 E-value=2.3e+02 Score=30.47 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=43.4
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHH
Q 008671 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQ 469 (557)
Q Consensus 411 ~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~e 469 (557)
+.+.++....+|+||.++...+....|.+++++- .-|+++++=-.+.+.+|..-|..
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~--a~n~~i~aeNeaikkrNa~aka~ 63 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANN--AANAALTAENTAIKKRNADAKAD 63 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999888888888877765 56666666666777777776665
No 87
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=38.88 E-value=20 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHH
Q 008671 451 EFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 451 Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
.+..|+.||..+|.||++.|..+
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999888544
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.76 E-value=1.7e+02 Score=24.30 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~ 395 (557)
-.+|..+..+-..+.+++..|.. ....|..++..++++..+....=+.+..+++.|.++..++.
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEk------------e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEK------------NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777778888877765 45677788888888888888888889999999998866664
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.53 E-value=1.6e+02 Score=23.94 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 008671 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAER 272 (557)
Q Consensus 202 n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~ 272 (557)
|..+..|+.|++..+.++..|+-.=.. ..+.+++++.-|+.-++++..--...+.++..|+.|-
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~-------~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEML-------QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666544333 3445888888888888888888777888888777553
No 90
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=38.29 E-value=1.8e+02 Score=24.39 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 008671 460 PEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533 (557)
Q Consensus 460 q~~~~~Lk~ev~R~----kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~ 533 (557)
++-.+-|+.++.+- +++...+.....-|..|+.-|+++.--...- -..+++|+.+|.+|.+.-++..
T Consensus 17 rNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~q-------q~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 17 RNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQ-------QARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777554 7888889999999999999998776433222 2345666666666655544443
No 91
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=37.95 E-value=1.1e+02 Score=24.94 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
..|+.++++|.......-..-|.++..+=. .=.++-++....=++..++..++++|..+.
T Consensus 18 ~eLkkevkKL~~~A~q~kmdLHDLaEdLP~-------~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 18 ADLKKKVRKLNSKAGQMKMDLHDLAEGLPT-------DYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------TGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999877655 666788888888899999999999997764
No 92
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.94 E-value=1.8e+02 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQL------------SKYKEAALDIHILRADVLSL 490 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev------------~R~kea~~e~~~lr~e~~sl 490 (557)
+..++++..-+.-...=+.+|.-|+ .|+|++.+++.+++.++..+
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777776 45577777887777776543
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.74 E-value=39 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQ 231 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~ 231 (557)
.|..||..|+..+..|...|..+..++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666555555555443
No 94
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=37.58 E-value=72 Score=25.36 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.|+.++++|....+..-..-|.++..+=. .=.++-++....=++..++..++++|..+.
T Consensus 7 eLkkevkKL~~~A~q~kmdLHDLaEdLP~-------~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 7 ELKAKLKKLNAQATALKMDLHDLAEDLPT-------GWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTT-------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhccchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888665544 667788888899999999999999998764
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.38 E-value=1.6e+02 Score=23.51 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008671 218 DLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (557)
Q Consensus 218 ~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrK 264 (557)
...........++..++-++..++.++....+.|.+++..|+.++++
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555556777777777777777777776654
No 96
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.07 E-value=62 Score=33.99 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~ 254 (557)
+.|..|+..|+..+..|..+++.+..++..+.+++...+.+-+.|-+++.++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577777777877777777777777777776666655555555555555443
No 97
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.27 E-value=2.3e+02 Score=29.48 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=24.5
Q ss_pred hHHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhh
Q 008671 151 QMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLK 190 (557)
Q Consensus 151 ~~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~ 190 (557)
..+..+..|+...+..|..+.......+.-+..+...++.
T Consensus 60 k~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~ 99 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRG 99 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3345666677777777776666666555555555555554
No 98
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.23 E-value=84 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~ 254 (557)
++..++.+.+-+..+..+++...-+...+..+++.|+.+++++
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555553333333455555555555543
No 99
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.83 E-value=15 Score=31.22 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.5
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEE 438 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eq 438 (557)
+.+|..|+..-.++|.+.+.|+.+++.
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999998
No 100
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=35.33 E-value=2.2e+02 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=24.0
Q ss_pred hccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008671 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGEL 251 (557)
Q Consensus 201 ~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~L 251 (557)
.|+.|..++..+...+..+-..+..+..++..+.+....++.+++.+..++
T Consensus 30 eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 30 ENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444443333333444444444433
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.29 E-value=83 Score=29.59 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=40.3
Q ss_pred hchHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhHHH
Q 008671 38 IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLK 83 (557)
Q Consensus 38 ~D~~vLqfQn~kL~qqLe~~k~e~~~LE~rie~L~~rQ~~~D~~L~ 83 (557)
+=+.=|+.+|..|.++|+.+..++..|..++..++.....+|+.+.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3345688999999999999999999999999999999988887764
No 102
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.21 E-value=3.9e+02 Score=27.57 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 235 d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
-+++..+.+|++|++++.++-.+|+..+..+.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455567777777766666666666555444
No 103
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=35.08 E-value=1.4e+02 Score=24.84 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 329 GRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (557)
Q Consensus 329 e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq 390 (557)
+...+..|+..|+.++...+..-+-.-|--|+.++..+.++++..... |.+.|.+|-+.
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~---l~~~k~~F~~~ 82 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE---IQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344466666777777665533333344788999999999998888888 78888877654
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.01 E-value=1.8e+02 Score=30.89 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ---DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~---d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
|-.+-..++..++.|+++...++.++..+. +....+..+.+.|+.++..+..++..+..++..+-+.-.+.....+|
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP 115 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVP 115 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 444566688888889999999998888642 23456778888899999888888888888886666554444333344
No 105
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.98 E-value=1.7e+02 Score=24.48 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQL------------SKYKEAALDIHILRADV 487 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev------------~R~kea~~e~~~lr~e~ 487 (557)
+..++++..-+.-...=+.+|.-|+ .|+|++.+++.+++.++
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666666666665 45577777777776654
No 106
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.80 E-value=63 Score=26.42 Aligned_cols=38 Identities=5% Similarity=0.152 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR 484 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr 484 (557)
.-|..++..|+.++++|..|+.+..++++-+..+.-+-
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la 75 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888777665543
No 107
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.17 E-value=73 Score=27.14 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLS 471 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~ 471 (557)
+....--+.-|+++++-+++||.++.
T Consensus 74 K~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 74 KSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778889999999999999984
No 108
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.16 E-value=1.9e+02 Score=23.42 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS-SSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 320 l~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~-~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
-.||+.|-..+..|-.++..|...+.|.++-. ....+..|..++..++.+++.+-..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888999999999999999999887543 3345566666776676666665443
No 109
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.35 E-value=1.8e+02 Score=30.48 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ---DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~---d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
|-.+-..++..++.|+++...++.++..+. +....+..+.+.|+.++.++..++..+..++..+-+.-.+.....+|
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp 114 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVP 114 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 444566688888999999999999988642 22345567888888888888888888888887666554444333344
No 110
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.84 E-value=2.8e+02 Score=25.12 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=34.5
Q ss_pred HhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 008671 405 RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYK 474 (557)
Q Consensus 405 ~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R~k 474 (557)
-+....++..|.+||+.|..-...|..+.-++.++..+ |. +++.-+--|.++|.|+|
T Consensus 97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---------l~----~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---------VE----ELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH----hcccchHHHHHHHHHhh
Confidence 34444457888888888887777777776666643322 22 22444555666666654
No 111
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.77 E-value=2.1e+02 Score=30.78 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQD-----------IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD 273 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d-----------~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~ 273 (557)
|-.+-..++..++.|+++...++.++..+.. ....+..+.+.|+.++..+..++..+..++..+-+.-.
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455666788888888888888888876431 23456677788888888887777777777766554433
Q ss_pred hccCCccc
Q 008671 274 VTKGAFFP 281 (557)
Q Consensus 274 ~~~g~~~~ 281 (557)
+.....+|
T Consensus 155 N~~~~~vP 162 (501)
T 1wle_A 155 NQTHPDVP 162 (501)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCCC
Confidence 43333333
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.31 E-value=1.2e+02 Score=22.41 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 229 ELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 229 e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
.+..++..+..+-.++..|...|.++..+|.+.+..+++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555577777777777777777777776666554
No 113
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.60 E-value=1.4e+02 Score=21.28 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008671 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGEL 251 (557)
Q Consensus 209 ~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~L 251 (557)
|..|+..+..|...+-.+...-+.+...++-++.++.+|++++
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666666666777777777665
No 114
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.42 E-value=1.2e+02 Score=25.34 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=7.3
Q ss_pred HhccHHHHHHHHHHHH
Q 008671 456 VSSFPEDMSAMQRQLS 471 (557)
Q Consensus 456 isSlq~~~~~Lk~ev~ 471 (557)
|++|++.+..|+..+.
T Consensus 14 ~~~Lq~~~~~LE~~l~ 29 (95)
T 3mov_A 14 YFQGQKESRACLERIQ 29 (95)
T ss_dssp ----CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666653
No 115
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.33 E-value=1.2e+02 Score=23.12 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 008671 216 LMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELE 252 (557)
Q Consensus 216 ~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE 252 (557)
...|+.+++.+..+-..+...++.++.++..|++-|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444446666666665543
No 116
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.46 E-value=1.1e+02 Score=22.97 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 008671 240 DKAKLNRLKG 249 (557)
Q Consensus 240 ~e~e~~eL~~ 249 (557)
++.++..|++
T Consensus 48 L~~e~~~Lk~ 57 (61)
T 1t2k_D 48 LRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 117
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.63 E-value=1e+02 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.423 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 459 FPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (557)
Q Consensus 459 lq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~ 495 (557)
|..+|.+|..++.++-.+++.+..||.++-.|..-|+
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888766666555
No 118
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.62 E-value=2.5e+02 Score=23.54 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=24.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH-----HhcCCCchhHHHHHHHHHhccHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEE-----ASREPGRKEIIAEFRALVSSFPEDM 463 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eq-----a~~~~~~k~i~~Emr~LisSlq~~~ 463 (557)
+.++.+|+..+.-+..++..|..++.. ...+..+..|..|+-.|-.||=++=
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444 1111222445555555555544443
No 119
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=29.45 E-value=1e+02 Score=24.82 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 008671 381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442 (557)
Q Consensus 381 Q~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~ 442 (557)
|.+|+.++.|. |.-....+..|.+||++|..-...+-.+.-++.++..+
T Consensus 25 ~~~~~~~~~~~-------------~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~E 73 (77)
T 3mtu_E 25 QSERTEALQQL-------------RVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLE 73 (77)
T ss_dssp CHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 120
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.36 E-value=1.8e+02 Score=23.18 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 240 DKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 240 ~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.+..|.+|+.+|.+...++...+..|+.++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666666666665553
No 121
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.29 E-value=2.4e+02 Score=30.30 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ---DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~---d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
|-.+-..++..++.|+++...++.++..+. +....+..+.+.|+.++.++..++..+..++..+-+.-.+.....+|
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP 117 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVV 117 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 334455677888888888888888876643 22455777888888888888888888888887665554444333444
No 122
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.26 E-value=84 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=31.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 228 ~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.-.+.+...+......+.+|+..|++...++...++.|++++
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666888999999999999999999999998876
No 123
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.11 E-value=94 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSK 472 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R 472 (557)
+....--+.-|+++++-+++||.++.-
T Consensus 44 K~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 44 KSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788899999999999999843
No 124
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.09 E-value=3e+02 Score=24.32 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=44.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccccCCCCCCCCCCccchhhhchHHHHHHH
Q 008671 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVH 309 (557)
Q Consensus 230 ~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~l 309 (557)
...++-....-+.++..|..+++.++-.++++..-|.+--.++.. .+.+..| +.+|++.+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQ-------------------QSlDiRK-LrELEADL 107 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQ-------------------QSLDMRK-LGELEADL 107 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH-THHHHHTH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhH-------------------hhhhHHH-HHHHHhHH
Confidence 344444445556677777777777777777777776654433211 1236666 88999998
Q ss_pred HHHHHHHHH
Q 008671 310 KELMDQASH 318 (557)
Q Consensus 310 eE~~~lA~~ 318 (557)
+|--....+
T Consensus 108 KEKDsMVe~ 116 (167)
T 4gkw_A 108 KEKDSMVES 116 (167)
T ss_dssp HHHHHHHHH
T ss_pred hhhhHHHHH
Confidence 887776655
No 125
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.31 E-value=55 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=28.4
Q ss_pred HhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008671 496 RKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (557)
Q Consensus 496 ~k~~e~~~l~~~~~~~~~~i~~l~~~~~~l~~~~~eL~l~l 536 (557)
+|...+..|.++...-..++..|+..|..|+.+...|+-+|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777788888888888888777776554
No 126
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.00 E-value=70 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 226 LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 226 ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
++..-..+.+.+..++.++.-....++++-.-+-.-.+.+++|.
T Consensus 5 ~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 5 LSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555444444444443
No 127
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=27.85 E-value=2.4e+02 Score=30.14 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhh
Q 008671 471 SKYKEAALDIHILRADVLSLTNVLERKVKECETLLAS 507 (557)
Q Consensus 471 ~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~ 507 (557)
+||-++..+|.++-..+.+++..+++.+.|.+...+.
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~ 392 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDA 392 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444454555555444444444333
No 128
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.67 E-value=1.7e+02 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQS 232 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~ 232 (557)
+..-+.+|..-++.||.+...+..++..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666777777777777777666665
No 129
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.61 E-value=1.5e+02 Score=24.05 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008671 357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (557)
Q Consensus 357 k~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~ 395 (557)
-.|..|++.+..++.++|+.+|.++-+=..+..+-++..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999988888887775435554
No 130
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.47 E-value=2e+02 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQS 232 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~ 232 (557)
+..-+.+|..-++.||.+...+..++..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~s 32 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYES 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666555
No 131
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.44 E-value=99 Score=24.38 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008671 241 KAKLNRLKGELESAVKEL 258 (557)
Q Consensus 241 e~e~~eL~~~LE~~~~el 258 (557)
..++..|..+++.++.++
T Consensus 49 ~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 132
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.10 E-value=1.3e+02 Score=26.98 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 008671 459 FPEDMSAMQRQLS-----------KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQ 523 (557)
Q Consensus 459 lq~~~~~Lk~ev~-----------R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~~~~~ 523 (557)
-..+|.+|+.+|. +|-+++--+.-+-.+++-.-.-++.-...|..|..-+..-..-+++|.+...
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3456667777763 3344444444444444333333333333344444444444444444444433
No 133
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.77 E-value=80 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (557)
Q Consensus 447 ~i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~~lr~e~~sl~~~l~ 495 (557)
++..++..+|...+..|..|+.++ .+...+|..||.+++-...++.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L---~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRL---SEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 455666666666666666666655 4455556666666555555543
No 134
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.69 E-value=2.1e+02 Score=29.96 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCccc
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQS-RQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFP 281 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~-~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~ 281 (557)
|-.+-..++..++.|+++...++.++.. -.+....+..+.+.|++++..+..++..+..++..+-+.-.+.....+|
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp 110 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 4456677888899999999999988875 1122345667788888888888888877777776655544443333344
No 135
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.55 E-value=3.6e+02 Score=24.32 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 008671 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (557)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~~g~~~~~ 282 (557)
+.|..-....+.++..-+.-|-.+|.+|+..-+....+-.-.+.--+-+..++.-+.-+.+|+.++..+
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~k----------- 91 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNK----------- 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-----------
Q ss_pred cCCCCCCCCCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGL 326 (557)
Q Consensus 283 ~~~~~~~~~~~~~~~~~k~~~eL~~~leE~~~lA~~Rl~ELe~l 326 (557)
-.++.|+.| +...+.+.++.+..-+..-.+-+++.
T Consensus 92 ----L~~L~P~~P-----~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 92 ----LQSLDPADP-----GYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp ----HTTC------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhcCCCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHH
No 136
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.27 E-value=1.3e+02 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGEL 251 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~L 251 (557)
+..++.+|+..+..|....+.+..++..+..++...+..-+.|-+++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444444444444444433
No 137
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.04 E-value=1.9e+02 Score=21.73 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 224 KSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 224 k~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
|.+..-.=.++|.+..++.+++.|+..||+-+ ++|++|.++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEq----kARk~LE~~ 46 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQ----RARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44555555677888888999999998888643 566666554
No 138
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.02 E-value=2.3e+02 Score=22.03 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 327 HDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 327 ~~e~~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
-.+...+..|+..|+.++..++..-+-.-|--|+-++..+.++++.....
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888886644444445778888888888888777766
No 139
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=25.34 E-value=23 Score=24.08 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=21.2
Q ss_pred HHHHHHH---HhcCCCchhHHHHHHHHHhccHHHH
Q 008671 432 IEMRLEE---ASREPGRKEIIAEFRALVSSFPEDM 463 (557)
Q Consensus 432 L~~e~eq---a~~~~~~k~i~~Emr~LisSlq~~~ 463 (557)
|.+.+|| ++.+.| .++|+|+|.|-..|..+|
T Consensus 4 lkarveqelqalearg-tdsnaelrameaklkaei 37 (40)
T 1abz_A 4 LKARVEQELQALEARG-TDSNAELRAMEAKLKAEI 37 (40)
T ss_dssp HHHHHHHHHHHHHHTC-SSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHH
Confidence 4445555 666667 789999999876665544
No 140
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.23 E-value=2.8e+02 Score=26.29 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=49.0
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHH
Q 008671 350 LSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEK 429 (557)
Q Consensus 350 I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~er 429 (557)
-..+.++..+..-|..+-.....+......|+.+-+. +...+.++-.+|-++.+++
T Consensus 114 ~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~------------------------l~~~~~~l~~qlE~~v~~K 169 (213)
T 1ik9_A 114 EKVENPAEVIRELIAYALDTIAENQAKNEHLQKENER------------------------LLRDWNDVQGRFEKAVSAK 169 (213)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777544444444333333221111 0233344445555566666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 430 NRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 430 e~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
+.++ .+...-|-.|+++....|..|+..|
T Consensus 170 ~~~E------------~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 170 EALE------------TDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554 3567778888888888888888666
No 141
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.10 E-value=2.6e+02 Score=29.93 Aligned_cols=68 Identities=6% Similarity=-0.072 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 364 EKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK-IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 364 ~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
-.+-.+.-.++..++.|+++|+.+..++-..+.. .++.++..++.. ...++..+|..+..+-.+.+.+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~-l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEK-LSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777889999988875332211 233333333222 2445555555555554444433
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.76 E-value=1.3e+02 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=8.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Q 008671 230 LQSRQDIDAKDKAKLNRLKGELE 252 (557)
Q Consensus 230 ~~~~~d~~~~~e~e~~eL~~~LE 252 (557)
+..++..+...++++.+|+.+|.
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444333
No 143
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.29 E-value=1.2e+02 Score=26.05 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=34.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGR------KEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 415 v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~------k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+.+|+..+.+.-..--.-+.++..|..+.|+ +....--+.-|+++++-|.+|+.++.-.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333444444443333332 5566777888999999999999998443
No 144
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=24.04 E-value=1.7e+02 Score=23.18 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 008671 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAV 255 (557)
Q Consensus 205 L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~ 255 (557)
-++|+..+-..+..|+..++-.-..+..+.-.-+-++..+..+.+.|++++
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999998888888877666777777777777777665
No 145
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.77 E-value=1.3e+02 Score=25.16 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHH
Q 008671 446 KEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (557)
Q Consensus 446 k~i~~Emr~LisSlq~~~~~Lk~ev~R~ 473 (557)
+....--+.-|+++++-|++|+.++.-.
T Consensus 44 k~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 44 KSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888999999999999998443
No 146
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.76 E-value=1.9e+02 Score=20.27 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhccC
Q 008671 250 ELESAVKELEECNCKLAALRAERDVTKG 277 (557)
Q Consensus 250 ~LE~~~~elek~rrKL~~l~~E~~~~~g 277 (557)
+|..+..++...++||+.++..-++..|
T Consensus 21 elaaleselqalekklaalksklqalkg 48 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALKG 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4666666777778888888766555443
No 147
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.71 E-value=6.2e+02 Score=26.14 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=23.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
...-..+|..+.+++.+....+-++.+....-+
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 455566777777888888888777777655555
No 148
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.22 E-value=2.8e+02 Score=21.93 Aligned_cols=58 Identities=28% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
+...+..|+..-+.-..++..+++.+...-...++|.++|=.+-.|-.-.+.||..++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3445555666666666777778887777777888888888777777777777776554
No 149
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=22.46 E-value=6.1e+02 Score=25.60 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAK----LNRLKGELESAVKELEECNCKLAALRAE 271 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e----~~eL~~~LE~~~~elek~rrKL~~l~~E 271 (557)
.|..-...|+..+...+.+-..+..++..+++.+.....- +..|...|..-..++...++++..++.+
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4556667788888888888888888888888887655444 4444444544445666777777777644
No 150
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.32 E-value=1.9e+02 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=9.3
Q ss_pred HHhHHHHHHHhhhhhHH
Q 008671 487 VLSLTNVLERKVKECET 503 (557)
Q Consensus 487 ~~sl~~~l~~k~~e~~~ 503 (557)
+..|..+|.+|..|+..
T Consensus 21 i~eLq~~L~~K~eELr~ 37 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666655443
No 151
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.88 E-value=2.3e+02 Score=21.44 Aligned_cols=11 Identities=9% Similarity=-0.194 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 008671 240 DKAKLNRLKGE 250 (557)
Q Consensus 240 ~e~e~~eL~~~ 250 (557)
++.++..|++.
T Consensus 49 L~~e~~~Lk~~ 59 (63)
T 2wt7_A 49 LLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 152
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.67 E-value=3.4e+02 Score=28.66 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q 008671 362 QLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK-IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (557)
Q Consensus 362 Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~~E~~~k-~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L 432 (557)
++-.+-.+...+...++.|+++|+.+..++...+.+ .+..++..+++. ...++..+|..+..+-.+.+.+
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSRE-IVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555566677788899988885332211 233333333222 2455555555555555544444
No 153
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.64 E-value=77 Score=23.58 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred hchHHHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 008671 38 IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQ 70 (557)
Q Consensus 38 ~D~~vLqfQn~kL~qqLe~~k~e~~~LE~rie~ 70 (557)
.|.-.|+..|..|..+.+.-+.+..+|..++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344457777777777777766666666666553
No 154
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.11 E-value=7.6e+02 Score=26.21 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=27.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev 470 (557)
.++..++..+.+...+.+.....+.+....+- ...++.++..+..+...|..|++.+
T Consensus 135 ~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~-~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 135 KQRKDNDIILSEYNTEMELHYNYIKDNLDNNI-PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556665555555555444321111 1244444455555555555544444
No 155
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.97 E-value=3e+02 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHH
Q 008671 302 LRDMESVHKELMDQA 316 (557)
Q Consensus 302 ~~eL~~~leE~~~lA 316 (557)
+..|++++..+...=
T Consensus 11 l~~LEaeyq~L~~kE 25 (119)
T 2avr_X 11 LQALDAEYQNLANQE 25 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555444333
No 156
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.46 E-value=7.4e+02 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008671 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (557)
Q Consensus 303 ~eL~~~leE~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~ 347 (557)
+.+..-|...+.=..+++.+|+.+..+...++.++..|...+++.
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777778888889888888888888888888777754
No 157
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.32 E-value=3.2e+02 Score=21.59 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008671 229 ELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (557)
Q Consensus 229 e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l 268 (557)
.+...+......+++++.+-+.|+---.+|-..|..|++|
T Consensus 29 ~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 29 RLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3444444444466777777777777777777777766665
No 158
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.27 E-value=2.6e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008671 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGEL 251 (557)
Q Consensus 214 ~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~L 251 (557)
..+.+|..-+..+..++..++...+..+.++.+|..-|
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777766543
No 159
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.19 E-value=5.3e+02 Score=26.46 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 008671 331 IKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (557)
Q Consensus 331 ~~l~~e~~~Lk~~l~d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l 376 (557)
..+..++..|...+.+++++.....|+.+-.++..++..++.|+..
T Consensus 6 ~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~ 51 (354)
T 3d5a_X 6 DRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREY 51 (354)
T ss_dssp HHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888889888889999999999999888888877
No 160
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.01 E-value=1.2e+02 Score=18.91 Aligned_cols=21 Identities=5% Similarity=0.305 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q 008671 458 SFPEDMSAMQRQLSKYKEAAL 478 (557)
Q Consensus 458 Slq~~~~~Lk~ev~R~kea~~ 478 (557)
.|.++.+.|+|||+-+|+-..
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 356777888888876665443
Done!