Query 008671
Match_columns 557
No_of_seqs 116 out of 140
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 09:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008671.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008671hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 67.8 16 0.0011 28.9 9.5 66 204-269 32-98 (110)
2 d1lrza1 a.2.7.4 (A:245-309) Me 47.3 29 0.0021 25.2 6.8 55 323-377 5-60 (65)
3 d2ap3a1 a.24.27.1 (A:12-196) H 43.1 70 0.0051 25.0 16.8 34 448-481 145-178 (185)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 43.0 65 0.0047 24.5 9.7 47 444-490 28-86 (89)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 41.0 41 0.003 23.9 6.9 34 321-354 4-37 (66)
6 d1seta1 a.2.7.1 (A:1-110) Sery 40.2 56 0.0041 25.4 8.3 32 413-444 28-59 (110)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 35.2 1E+02 0.0073 24.4 10.6 18 308-325 85-102 (133)
8 d1ivsa1 a.2.7.3 (A:797-862) Va 31.5 57 0.0042 23.1 6.4 59 412-472 3-64 (66)
9 d1wu9a1 a.245.1.1 (A:191-249) 18.2 1.1E+02 0.0082 21.5 5.5 30 362-391 2-31 (59)
10 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 17.7 2.4E+02 0.017 22.7 12.6 62 204-265 46-107 (196)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=67.79 E-value=16 Score=28.93 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQ-DIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~-d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~ 269 (557)
.|..+...++..++.|+++...++.++.... +.......+.+.|+.++.++..++..+..++..+-
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777899999999999999999997643 22334556667777777777777766666665444
No 2
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=47.30 E-value=29 Score=25.25 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 008671 323 LKGLHDGRIKVLQQLYNLQNTLK-SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (557)
Q Consensus 323 Le~l~~e~~~l~~e~~~Lk~~l~-d~~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ 377 (557)
|..|+.+...|..++..+..+|. +++.=+.-..+..|.+|+.....-++++..+.
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999998887 55544445588888999888888888877774
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=43.14 E-value=70 Score=24.96 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 008671 448 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIH 481 (557)
Q Consensus 448 i~~Emr~LisSlq~~~~~Lk~ev~R~kea~~e~~ 481 (557)
.+.+++..+..+...+..++..+..+......+.
T Consensus 145 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T d2ap3a1 145 TQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQ 178 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444433333333
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.95 E-value=65 Score=24.49 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHhccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhH
Q 008671 444 GRKEIIAEFRALVSSFPEDMSAMQRQL------------SKYKEAALDIHILRADVLSL 490 (557)
Q Consensus 444 ~~k~i~~Emr~LisSlq~~~~~Lk~ev------------~R~kea~~e~~~lr~e~~sl 490 (557)
+++..++++..-+.-...-+.+|.-|| .|+|++.+++.+++.++...
T Consensus 28 erk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a 86 (89)
T d1vcsa1 28 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 86 (89)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347788888888888888888888886 56699999999998887544
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=41.02 E-value=41 Score=23.94 Aligned_cols=34 Identities=12% Similarity=-0.098 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccCh
Q 008671 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK 354 (557)
Q Consensus 321 ~ELe~l~~e~~~l~~e~~~Lk~~l~d~~~I~~S~ 354 (557)
.|+.+|..+...+.+++..++..|.|..||..-|
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP 37 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASPGFREKAP 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCC
Confidence 5788999999999999999999999998877444
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=40.17 E-value=56 Score=25.39 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=20.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008671 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (557)
Q Consensus 413 ~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~ 444 (557)
..+..+......+..+.+.|+.+-...+..-|
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666677777666666444444
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.16 E-value=1e+02 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008671 308 VHKELMDQASHQLLELKG 325 (557)
Q Consensus 308 ~leE~~~lA~~Rl~ELe~ 325 (557)
.++++.....+|+.+|++
T Consensus 85 ~~~eA~~~l~~ri~~l~~ 102 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELES 102 (133)
T ss_dssp EHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455666666777655544
No 8
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=31.46 E-value=57 Score=23.08 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=43.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH---HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 008671 412 DSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (557)
Q Consensus 412 ~~~v~~lE~~Laqvr~ere~L~~e~eq---a~~~~~~k~i~~Emr~LisSlq~~~~~Lk~ev~R 472 (557)
+.++..|+..|.++.++.+.+...+.. ...++. .++.+-+.-...++..+..|+..+.+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~--~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPK--EVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCT--THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888888776 555555 78887777777777777777666543
No 9
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.23 E-value=1.1e+02 Score=21.49 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671 362 QLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (557)
Q Consensus 362 Q~~~lkaeld~~R~l~ekLQ~er~~~~rq~ 391 (557)
|...|..++.+++.-++-|..|||.+..+.
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KL 31 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKL 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999997543
No 10
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.66 E-value=2.4e+02 Score=22.68 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (557)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL 265 (557)
.+..++..+...+..+..+.+.....+..-.........-+..|...+-++..++.....+.
T Consensus 46 ~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~ 107 (196)
T d1fioa_ 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777788888887778877777766555555556677888888888888888776644
Done!