BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008674
         (557 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana
           GN=At2g33490 PE=1 SV=2
          Length = 623

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 270/569 (47%), Positives = 353/569 (62%), Gaps = 78/569 (13%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG++QFELQKLVD YRS+IF TIT PSESLLNELR VE+M+R CDEKRNV E ++ +QR
Sbjct: 92  MLGKLQFELQKLVDKYRSHIFQTITIPSESLLNELRIVEEMQRLCDEKRNVYEGMLTRQR 151

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKG+SK GKGE+ S  QQLQ A+D+YE E  L VFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 152 EKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSLKQGQTRSLLTQAARHHAAQL 210

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL-----------EDNDGEDGEDSYYANE 169
            FF+K   SLE VD HV++V E QHIDY FSGL            +NDG +  D      
Sbjct: 211 CFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDDEIENNENDGSEVHDD----- 265

Query: 170 AGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASH-- 227
            GELSF+YR N +  D  S++  S E+ + D++FPQ      A+ N +   G Y+ SH  
Sbjct: 266 -GELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIGGPYTAQENEE---GNYRKSHSF 321

Query: 228 -RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRT 285
            R+ R  S SAP+FPE R   P+E++ +++ +  R+ +TY LPTP++     SS+ +P  
Sbjct: 322 RRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVETTRSPSSTTSPGH 381

Query: 286 R---PSNPS-GRTYNLSHSSPLEQKKEDRDYGDAHLSEHS--GLKSQSLLKESDSNNAST 339
           +    SNP+   T  + +SSPLE +      G A +S  S   LK Q +L+ES+  N S 
Sbjct: 382 KNVGSSNPTKAITKQIWYSSPLETR------GPAKVSSRSMVALKEQ-VLRESN-KNTSR 433

Query: 340 RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIV 399
            PPPL DGL   +L TL        K ++ SGPLTSK   +KP  ++S          + 
Sbjct: 434 LPPPLADGLLFSRLGTL--------KRRSFSGPLTSKPLPNKPLSTTS---------HLY 476

Query: 400 SGLLSHAPVPQTKTS--PRV--SPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLV 455
           SG     P+P+   S  P+V  SPTASP  VS+P+ISELHELPRPP   +T   KSS  +
Sbjct: 477 SG-----PIPRNPVSKLPKVSSSPTASPTFVSTPKISELHELPRPPPRSST---KSSREL 528

Query: 456 GHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLE 515
           G+SAPL+ R+Q  +       + + +ASPLPIPP I +RSFSIP+S+ +A  L +SK   
Sbjct: 529 GYSAPLVSRSQLLSK-----PLITNSASPLPIPPAI-TRSFSIPTSNLRASDLDMSK--- 579

Query: 516 SPKVVEKSEGVSSPPLTPISLANVKPVSI 544
              +  K  G  SPPLTP+SL +  P ++
Sbjct: 580 -TSLGTKKLGTPSPPLTPMSLIHPPPQAL 607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,023,561
Number of Sequences: 539616
Number of extensions: 8703078
Number of successful extensions: 32682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 910
Number of HSP's that attempted gapping in prelim test: 29911
Number of HSP's gapped (non-prelim): 2447
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)