Query 008674
Match_columns 557
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 15:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07642 BAR_ASAP2 The Bin/Amph 100.0 4.1E-37 8.9E-42 296.1 10.0 136 1-138 67-213 (215)
2 cd07604 BAR_ASAPs The Bin/Amph 99.9 2.4E-25 5.1E-30 213.8 8.1 136 1-138 67-213 (215)
3 cd07307 BAR The Bin/Amphiphysi 99.2 2.6E-11 5.7E-16 104.9 7.5 132 2-136 59-194 (194)
4 PF03114 BAR: BAR domain; Int 98.8 2.3E-08 5E-13 89.9 8.0 132 2-137 97-228 (229)
5 smart00721 BAR BAR domain. 97.8 0.00012 2.7E-09 68.1 9.7 133 3-137 101-237 (239)
6 cd07603 BAR_ACAPs The Bin/Amph 97.4 0.00038 8.1E-09 67.3 7.1 130 5-136 69-199 (200)
7 cd07634 BAR_GAP10-like The Bin 97.2 0.00092 2E-08 65.7 7.0 119 16-136 86-206 (207)
8 cd07640 BAR_ASAP3 The Bin/Amph 97.2 0.0032 6.8E-08 62.4 10.6 134 3-138 69-211 (213)
9 cd07641 BAR_ASAP1 The Bin/Amph 97.1 0.0023 5E-08 63.5 9.2 134 4-138 70-213 (215)
10 cd07637 BAR_ACAP3 The Bin/Amph 96.6 0.0083 1.8E-07 58.3 8.0 127 8-137 72-200 (200)
11 cd07593 BAR_MUG137_fungi The B 96.6 0.0084 1.8E-07 59.0 8.0 123 2-134 80-205 (215)
12 cd07594 BAR_Endophilin_B The B 96.4 0.0096 2.1E-07 59.2 7.7 125 2-134 98-226 (229)
13 cd07606 BAR_SFC_plant The Bin/ 96.4 0.0074 1.6E-07 58.8 6.6 126 8-135 74-201 (202)
14 cd07639 BAR_ACAP1 The Bin/Amph 96.0 0.015 3.2E-07 57.0 6.4 117 17-136 81-199 (200)
15 cd07601 BAR_APPL The Bin/Amphi 95.9 0.033 7.3E-07 55.1 8.4 134 7-141 75-211 (215)
16 KOG1118 Lysophosphatidic acid 95.9 0.031 6.7E-07 58.7 8.2 120 1-136 111-234 (366)
17 cd07614 BAR_Endophilin_A2 The 95.5 0.036 7.8E-07 55.2 6.7 118 2-135 93-214 (223)
18 cd07615 BAR_Endophilin_A3 The 95.0 0.073 1.6E-06 53.1 7.3 121 2-138 93-217 (223)
19 cd07592 BAR_Endophilin_A The B 95.0 0.1 2.2E-06 51.8 8.1 122 2-138 93-217 (223)
20 cd07635 BAR_GRAF2 The Bin/Amph 94.8 0.12 2.5E-06 51.2 8.0 117 18-135 88-205 (207)
21 cd07602 BAR_RhoGAP_OPHN1-like 93.9 0.15 3.2E-06 50.5 6.7 117 18-136 88-206 (207)
22 cd07631 BAR_APPL1 The Bin/Amph 93.7 0.43 9.3E-06 47.8 9.4 117 22-141 90-211 (215)
23 cd07616 BAR_Endophilin_B1 The 93.4 0.51 1.1E-05 47.4 9.4 122 3-133 99-225 (229)
24 cd07600 BAR_Gvp36 The Bin/Amph 93.1 0.48 1E-05 47.7 8.8 123 3-134 113-239 (242)
25 cd07595 BAR_RhoGAP_Rich-like T 93.0 0.56 1.2E-05 47.0 9.1 133 1-139 85-226 (244)
26 cd07638 BAR_ACAP2 The Bin/Amph 91.5 0.57 1.2E-05 46.1 6.9 127 8-136 72-199 (200)
27 KOG0521 Putative GTPase activa 90.6 1.1 2.3E-05 52.0 9.1 138 4-142 87-225 (785)
28 cd07613 BAR_Endophilin_A1 The 90.4 1.3 2.7E-05 44.6 8.2 118 2-137 93-216 (223)
29 cd07636 BAR_GRAF The Bin/Amphi 88.7 1.2 2.7E-05 44.2 6.8 112 22-135 92-205 (207)
30 cd07590 BAR_Bin3 The Bin/Amphi 87.3 2.9 6.2E-05 41.9 8.3 132 9-141 81-216 (225)
31 cd07632 BAR_APPL2 The Bin/Amph 85.0 2.6 5.6E-05 42.5 6.7 111 19-130 87-199 (215)
32 cd07617 BAR_Endophilin_B2 The 83.9 7.2 0.00016 39.3 9.3 115 2-133 98-216 (220)
33 cd07633 BAR_OPHN1 The Bin/Amph 79.0 7.7 0.00017 39.0 7.5 120 15-135 81-205 (207)
34 cd07619 BAR_Rich2 The Bin/Amph 77.2 15 0.00031 37.8 9.0 132 3-142 87-233 (248)
35 cd07618 BAR_Rich1 The Bin/Amph 73.1 22 0.00048 36.3 9.1 129 6-142 90-231 (246)
36 cd07620 BAR_SH3BP1 The Bin/Amp 71.3 19 0.00042 37.3 8.2 129 3-139 87-239 (257)
37 cd07588 BAR_Amphiphysin The Bi 68.7 21 0.00046 35.5 7.7 115 5-130 73-199 (211)
38 PF10455 BAR_2: Bin/amphiphysi 67.8 34 0.00073 35.9 9.2 98 27-133 182-283 (289)
39 cd07591 BAR_Rvs161p The Bin/Am 67.7 27 0.00059 34.7 8.2 115 21-137 94-211 (224)
40 PF13807 GNVR: G-rich domain o 58.6 16 0.00034 30.5 4.1 27 36-63 5-31 (82)
41 PF12729 4HB_MCP_1: Four helix 57.0 1.1E+02 0.0024 26.2 9.1 114 10-143 55-172 (181)
42 PF05983 Med7: MED7 protein; 54.7 20 0.00044 34.2 4.6 52 6-57 74-152 (162)
43 cd07609 BAR_SIP3_fungi The Bin 49.5 46 0.00099 33.3 6.3 76 24-101 90-167 (214)
44 cd07589 BAR_DNMBP The Bin/Amph 49.0 53 0.0012 31.8 6.5 109 11-130 77-186 (195)
45 cd07611 BAR_Amphiphysin_I_II T 41.0 52 0.0011 33.1 5.2 110 12-129 80-198 (211)
46 PF08855 DUF1825: Domain of un 37.8 41 0.00089 31.0 3.6 51 5-55 10-60 (108)
47 cd07612 BAR_Bin2 The Bin/Amphi 35.3 1.6E+02 0.0035 29.8 7.6 119 11-133 79-202 (211)
48 KOG3438 DNA-directed RNA polym 32.9 53 0.0011 30.3 3.5 36 22-57 48-90 (105)
49 cd09238 V_Alix_like_1 Protein- 32.0 74 0.0016 33.3 4.9 30 8-39 245-274 (339)
50 PF06809 NPDC1: Neural prolife 30.8 45 0.00099 35.9 3.2 59 115-196 259-317 (341)
51 KOG4672 Uncharacterized conser 29.3 50 0.0011 36.8 3.3 48 141-188 225-272 (487)
52 cd07599 BAR_Rvs167p The Bin/Am 27.9 1.7E+02 0.0037 28.3 6.3 120 7-131 85-210 (216)
53 cd07596 BAR_SNX The Bin/Amphip 23.9 3.6E+02 0.0078 24.8 7.4 58 76-136 158-218 (218)
54 COG3206 GumC Uncharacterized p 23.0 94 0.002 33.3 3.9 63 4-66 328-403 (458)
55 COG3105 Uncharacterized protei 22.9 1E+02 0.0023 29.6 3.7 43 4-56 38-83 (138)
56 PHA03190 UL14 tegument protein 22.8 1E+02 0.0022 31.1 3.8 63 78-142 10-79 (196)
57 CHL00118 atpG ATP synthase CF0 22.7 1.1E+02 0.0023 28.5 3.7 37 28-64 55-91 (156)
58 PF13805 Pil1: Eisosome compon 22.2 6E+02 0.013 26.9 9.3 98 3-118 113-212 (271)
59 PF10391 DNA_pol_lambd_f: Fing 21.4 30 0.00065 27.6 -0.1 27 121-147 17-43 (52)
60 KOG3771 Amphiphysin [Intracell 21.2 5.4E+02 0.012 29.2 9.1 82 65-151 153-237 (460)
61 KOG2818 Predicted undecaprenyl 20.7 87 0.0019 32.8 3.0 43 89-140 29-71 (263)
No 1
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=100.00 E-value=4.1e-37 Score=296.12 Aligned_cols=136 Identities=24% Similarity=0.328 Sum_probs=132.5
Q ss_pred CcchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhH-HHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc----
Q 008674 1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTV-EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS---- 74 (557)
Q Consensus 1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtV-EEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s---- 74 (557)
|+|++|+||++|++.|+.||++||+.|+++||| |||+| ||||+|||++|+.||+|++ +.||++.|++|++.++
T Consensus 67 kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~-k~ek~~r~~~K~~~~~~~e~ 145 (215)
T cd07642 67 KFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVT-KIEKEKKEHAKMHGMIRTEI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccccchhcc
Confidence 689999999999999999999999999999999 99999 7999999999999999996 9999999999999986
Q ss_pred -----hHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 75 -----LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 75 -----~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
.+ +|++++..||.+|+.|+|++++||+||.++||+++++||+||++||++|+|+||++|||++
T Consensus 146 ~~~E~ae-~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~ 213 (215)
T cd07642 146 SGAEIAE-EMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIE 213 (215)
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67 9999999999999999999999999999999999999999999999999999999999986
No 2
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.92 E-value=2.4e-25 Score=213.80 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=128.9
Q ss_pred CcchhhHHHHHHHhhhhccceeeccCCcHHHHHH-hhhH-HHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-----
Q 008674 1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTV-EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV----- 73 (557)
Q Consensus 1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLLnE-LrtV-EEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~----- 73 (557)
++|++++||.++.+.|++||.++|+.|.++++|| |+.| +|||++||.+++.||.++ .+.+|+|.+.+|++.+
T Consensus 67 kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~-~k~~k~Kk~~~~~~~~~r~e~ 145 (215)
T cd07604 67 KFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKA-SKIEKEKKQLAKEAGMIRTEI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhhhhhhhcchhh
Confidence 4789999999999999999999999999999999 9997 699999999999999996 7889999999977633
Q ss_pred ----chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 74 ----SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 74 ----s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
+.+ ||+.++..|+++|..|||+|+.|+++|..++|++++++|.||++||++|++.||++|||++
T Consensus 146 ~~~e~~~-~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~ 213 (215)
T cd07604 146 TGAEIAE-EMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIE 213 (215)
T ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 466 9999999999999999999999999999999999999999999999999999999999986
No 3
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.22 E-value=2.6e-11 Score=104.89 Aligned_cols=132 Identities=22% Similarity=0.327 Sum_probs=112.6
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
+|.++.+|..+.+.|...|..+|..|-+.++ .++..+.+++++||.+|.-|+.+++.+..-.+.+..-++-...+++++
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~ 138 (194)
T cd07307 59 FGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQ 138 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Confidence 5889999999999999999999999999999 999999999999999999999999876654433211112233455999
Q ss_pred HHHHHHHHhHhhhhhhhccccccch---hhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQGQY---RSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQGQ~---RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
.|+++|+.-+..++..|..|.+++. ..+|++-+.+ |+.||.+|++.++.+.||
T Consensus 139 ~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~---q~~~~~~~~~~~~~l~~~ 194 (194)
T cd07307 139 EAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEA---QSEFFKEVLKILEQLLPY 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhHHHHHHhhcCC
Confidence 9999999999999999999999996 6777766655 999999999999999885
No 4
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=98.76 E-value=2.3e-08 Score=89.91 Aligned_cols=132 Identities=21% Similarity=0.312 Sum_probs=115.5
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 81 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~ 81 (557)
+|+++-+|..+.+.|...|-.+|..|-+.+++++..|.++++.||.||.-|+..+.. -+|.+.+.++.+. ++.++.
T Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k-~~k~~~~~~~~~~---~~~l~~ 172 (229)
T PF03114_consen 97 FGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSK-LEKLRKKKSKSSK---EEKLEE 172 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCHTTSSBTHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccc---HHHHHH
Confidence 578888999999999999999999999999999999999999999999999998744 4555655555544 449999
Q ss_pred HHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674 82 ANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 137 (557)
Q Consensus 82 a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV 137 (557)
|..+|+.....+.-.|-.|-.....-+.+.-..--.+|+.||++++.-|+.|+|.+
T Consensus 173 a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 173 AKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887755558888888999999999999999999875
No 5
>smart00721 BAR BAR domain.
Probab=97.81 E-value=0.00012 Score=68.12 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=94.3
Q ss_pred chhhHHHHHHHhhhhccceee-ccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHH---HhhcCCCCCCCCccchHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLT-ITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQ---REKGKSKSGKGESVSLQQQ 78 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~T-IT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~---~eKGrsk~~KgEs~s~q~Q 78 (557)
|.++-++-.+.+.+ ..|..+ |..|-.-+.+++..+.+..+.++.||.-|+..++.+ +.+++ +..+-+-...+++
T Consensus 101 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~-~~~~~kl~~~e~e 178 (239)
T smart00721 101 GEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKE-KKKDEKLAKAEEE 178 (239)
T ss_pred HHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-CChhhhhhhHHHH
Confidence 44444444444455 555555 555556666999999999999999999999998653 22222 1111123335558
Q ss_pred HHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674 79 LQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 137 (557)
Q Consensus 79 Lq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV 137 (557)
|+.|.++|++-...++=.|..|-+...-.++.+=..-..||+.||+++.+.|+.|.+.+
T Consensus 179 l~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 179 LRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997777777777776666555566666778899999999999999998865
No 6
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.41 E-value=0.00038 Score=67.27 Aligned_cols=130 Identities=15% Similarity=0.271 Sum_probs=105.8
Q ss_pred hhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHH
Q 008674 5 VQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAAN 83 (557)
Q Consensus 5 vQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~ 83 (557)
+=-||..+......++-.+|..|-+++++ +|+.|-|.|+..|.-.+-|+..++.+-.=.|+| ..|---...||.+++
T Consensus 69 ~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K--~~~~~Ea~~~L~~~R 146 (200)
T cd07603 69 ALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK--PQEAEEATNILTATR 146 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHH
Confidence 33466666667777888999999888886 599999999999999999999987655444444 223333345999999
Q ss_pred HHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 84 DEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 84 ~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
-.|+..+.=+|+.|..+..-+--.+|---..-=-||++||+.|..-++.+||.
T Consensus 147 k~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py 199 (200)
T cd07603 147 SCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc
Confidence 99999999999999999877777777777777889999999999999999986
No 7
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.18 E-value=0.00092 Score=65.71 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=97.1
Q ss_pred hhccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC-ccchHHHHHHHHHHHHHhHhhh
Q 008674 16 YRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE-SVSLQQQLQAANDEYEEEARLC 93 (557)
Q Consensus 16 YRshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE-s~s~q~QLq~a~~EY~EeAtLf 93 (557)
-..++-.+|..|-+++++| |+-|-|+|++.|.-.+-|+..+ .|...-+|+.|.. -.-..++|..++..|+..+-=.
T Consensus 86 L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~al--eK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldY 163 (207)
T cd07634 86 LIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSIL--EKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEY 163 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHH--HHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788999999985 9999999999999999998854 6666777766653 3334459999999999999999
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 94 VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 94 vFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
|+.|.-+..-+--.+|.--..---||+.||+.|..-|+.+||-
T Consensus 164 v~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py 206 (207)
T cd07634 164 VFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 9999888777777777666677779999999999999999883
No 8
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=97.18 E-value=0.0032 Score=62.42 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=106.9
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHH-HHHHHhhhHHHHHHHHHHHH--HhhcCCCCC-----CCCcc
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMAQQ--REKGKSKSG-----KGESV 73 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVE-EMKrQCDeKR~vYE~M~a~~--~eKGrsk~~-----KgEs~ 73 (557)
..++.||.-|..+-=.|+-+-|.-|=+++|| +|+-|- |+|++-|.=.+-||.-+... -.|++.|-. -+|-
T Consensus 69 av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eE- 147 (213)
T cd07640 69 AVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTD- 147 (213)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHH-
Confidence 4567899999999989999999999999998 599999 99999999999999977532 222222222 2222
Q ss_pred chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 74 SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 74 s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
+.+ -|+..+-=||-.|.=+++-+.-|+--|--.+|.---.---||.+||..|+|.||.+.|-++
T Consensus 148 aae-~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik 211 (213)
T cd07640 148 TAE-DMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIE 211 (213)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 234 7888888899888878887777777777778777777778999999999999999999876
No 9
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=97.13 E-value=0.0023 Score=63.49 Aligned_cols=134 Identities=18% Similarity=0.267 Sum_probs=103.0
Q ss_pred hhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHH-HHHHHhhhHHHHHHHHHHHH--HhhcCCCCCCCCc------c
Q 008674 4 EVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMAQQ--REKGKSKSGKGES------V 73 (557)
Q Consensus 4 KvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVE-EMKrQCDeKR~vYE~M~a~~--~eKGrsk~~KgEs------~ 73 (557)
.+..||-.|--.-=.++-++|..|=+++|| +|+-|- |+|++-|.=++-||.-+..- -.|-..|-.-.|. -
T Consensus 70 ~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~E 149 (215)
T cd07641 70 TLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAE 149 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchh
Confidence 344566555544455666789999999997 599999 99999999999999987522 2221133333331 2
Q ss_pred chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 74 SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 74 s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
+.+ .|...+-=||-.|-=+++-+.-|+--|--.+|----.---||.+||..|++.||.++|-++
T Consensus 150 aa~-~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k 213 (215)
T cd07641 150 IAE-EMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIE 213 (215)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356 8999999999999989998888887777778877777778999999999999999999886
No 10
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.58 E-value=0.0083 Score=58.34 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=97.1
Q ss_pred HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHH
Q 008674 8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDE 85 (557)
Q Consensus 8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-s~q~QLq~a~~E 85 (557)
||-........++=.+|..|-+.+++ +|+.|-|.|+..|.-++-|+..++.+ ...|..|...+ -...||.+++-.
T Consensus 72 ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~---~~~k~kk~~~l~Ea~~~L~~~Rk~ 148 (200)
T cd07637 72 EMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKN---AQAPRHKPHEVEEATSTLTITRKC 148 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCChHHHHHHHHHHHHHHHH
Confidence 44444455556677788888888876 59999999999999999999987642 33442222111 112499999999
Q ss_pred HHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674 86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 137 (557)
Q Consensus 86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV 137 (557)
|...+.=+|+.|.-+..-+--.+|.--..-=-||+.||++|..-|+.+||++
T Consensus 149 f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 149 FRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 9999999999999887766666666666667799999999999999999963
No 11
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=96.56 E-value=0.0084 Score=59.01 Aligned_cols=123 Identities=21% Similarity=0.389 Sum_probs=92.4
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 81 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~ 81 (557)
+|.+|.+|-..-+.|-..+-.++-.|=+..|+|+.++---.+.-+.||=-|++.++.++.. |.+....+.+|+.
T Consensus 80 ~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ksk~~ka------k~~~~~~eeElr~ 153 (215)
T cd07593 80 LGRAHCKIGTLQEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALTKSQKA------KKEDSRLEEELRR 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccchhHHHHHHH
Confidence 5778888888878887788888888888777899988888899999999999998765533 1222345559999
Q ss_pred HHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674 82 ANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 134 (557)
Q Consensus 82 a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavE 134 (557)
|.++|++=.-.+.=++..++.. |-+.|.. ==.|||.||++....|+.|-
T Consensus 154 Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~----lv~AQl~Yh~q~~e~L~~l~ 205 (215)
T cd07593 154 AKAKYEESSEDVEARMVAIKESEADQYRDLTD----LLDAELDYHQQSLDVLREVR 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9999998777777777666653 3333322 22589999999999988763
No 12
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=96.44 E-value=0.0096 Score=59.18 Aligned_cols=125 Identities=17% Similarity=0.331 Sum_probs=94.2
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
.|.+|.+|-..-+.|=..|-..+-.|=+.+|+ ++..+---.+.-..||--|++.+++++ +.|+...+....+ .|+
T Consensus 98 ~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~---kAk~~~~~~~~e~-elr 173 (229)
T cd07594 98 VGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK---KAKSAEAIEQAEQ-DLR 173 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCccchhhhHH-HHH
Confidence 58889999989999999999999999888887 898888888999999999999986652 3333333333444 999
Q ss_pred HHHHHHHHhHhhhhhhhccccc---cchhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674 81 AANDEYEEEARLCVFRLKSLKQ---GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 134 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQ---GQ~RSLLTQAARHHAAQL~fFrkgLKsLEavE 134 (557)
.|.++|++-+-..+=+++-++. .|-+.|..= =.|||+||++....|+.+-
T Consensus 174 ~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~l----v~AQl~Yh~q~~e~L~~l~ 226 (229)
T cd07594 174 VAQSEFDRQAEITKLLLEGISSTHANHLRCLRDF----VEAQMTYYAQCYQYMDDLQ 226 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 9999999766665555555554 344444322 2689999999988888763
No 13
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.41 E-value=0.0074 Score=58.82 Aligned_cols=126 Identities=18% Similarity=0.284 Sum_probs=96.3
Q ss_pred HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHH
Q 008674 8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDE 85 (557)
Q Consensus 8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-s~q~QLq~a~~E 85 (557)
||...-+.-++++-.+|..|-+.+++ +|+-|-|.|++.|--++-||..+..+.. -+|+.|.+-+ -.+++|..++..
T Consensus 74 ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~--l~k~~k~~~~~ea~~~l~~~R~~ 151 (202)
T cd07606 74 EIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLS--LTKDAKPEILAAAEEDLGTTRSA 151 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCchHHHHHHHHHHHHHHHH
Confidence 44444555567777889999999986 5999999999999999999998754432 2233343222 233489999999
Q ss_pred HHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674 86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 135 (557)
Q Consensus 86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP 135 (557)
|+.-+.=.++.|.-|.--+--.+|.--..-=-||+.||++|..-|..+||
T Consensus 152 F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p 201 (202)
T cd07606 152 FETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999889999988876666666666666667899999999999999987
No 14
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.02 E-value=0.015 Score=57.02 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=91.3
Q ss_pred hccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC-ccchHHHHHHHHHHHHHhHhhhh
Q 008674 17 RSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE-SVSLQQQLQAANDEYEEEARLCV 94 (557)
Q Consensus 17 RshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE-s~s~q~QLq~a~~EY~EeAtLfv 94 (557)
-.++-.+|..|-+++++| |+-|-|.|+..|-=.+-|+..+...- +.+..|.. ---...+|..++-.|++-+-=.|
T Consensus 81 l~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~---~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV 157 (200)
T cd07639 81 LEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNA---ETPRRKAQEVEEAAAALLGARATFRDRALDYA 157 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHh---hccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999975 89999999999999999998763222 22233442 22223388889999998888889
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 95 FRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 95 FRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
+.|.-+..-+--.+|.--...=-||+.||+.|..-|+.+||-
T Consensus 158 ~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y 199 (200)
T cd07639 158 LQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999888777777777776777789999999999999999984
No 15
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.91 E-value=0.033 Score=55.05 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC-CCCCCccchHHHHHHHHH
Q 008674 7 FELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK-SGKGESVSLQQQLQAAND 84 (557)
Q Consensus 7 fELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk-~~KgEs~s~q~QLq~a~~ 84 (557)
-||-.+-....+++-.+|..|-+.++ ++|+-|-|.|+..|-=.+-||..+..+-.=-|.| +.+-..=..+ +|..++-
T Consensus 75 ~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~-~l~~~R~ 153 (215)
T cd07601 75 DELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVND-EVYACRK 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHH-HHHHHHH
Confidence 35666666778888899999999999 5799999999999999999999876554422222 2232011245 9999999
Q ss_pred HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchh-hhhhHHHHHH
Q 008674 85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE-AVDTHVRLVA 141 (557)
Q Consensus 85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLE-avEPHVk~va 141 (557)
.|+.-|.=+++.|--+..-+--.+|.--..-=-||+.||+.|.--|. .+||-++-|.
T Consensus 154 ~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~ 211 (215)
T cd07601 154 KQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDIN 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886666666666555666689999999999996 9999887653
No 16
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=95.85 E-value=0.031 Score=58.70 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=90.1
Q ss_pred CcchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHH
Q 008674 1 MLGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQL 79 (557)
Q Consensus 1 mLGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QL 79 (557)
|+||+-.|+-.+-|+.-.++-++..-|=+-| |+||..+.--.......|-+|+|... .-|+-| .+ .|
T Consensus 111 ~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkk---k~~K~~--------dE-el 178 (366)
T KOG1118|consen 111 DAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKK---KQGKIK--------DE-EL 178 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHH---HhccCC--------hH-HH
Confidence 4677777887788888888888888888989 99999888877888889999999763 223333 44 78
Q ss_pred HHHHHHHHH---hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 80 QAANDEYEE---EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 80 q~a~~EY~E---eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
+.|.+.|+| +|---.|-|+.+.=-|. .|-++---|||+|||+.+.||+.|+--
T Consensus 179 rqA~eKfEESkE~aE~sM~nlle~d~eqv----sqL~~Li~aqLdfhrqs~~iL~~l~~~ 234 (366)
T KOG1118|consen 179 RQALEKFEESKELAEDSMFNLLENDVEQV----SQLSALIQAQLDFHRQSTQILQELQMK 234 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777775 45555677777765553 344555568999999999999988743
No 17
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=95.46 E-value=0.036 Score=55.16 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=92.3
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
.|.+|.+|-..-+.|=..|-..+-.|=+.+| +++..+---.+.-.-||=-|++-++++ +| ...+ +|+
T Consensus 93 ~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~--------~k---~~ee-elr 160 (223)
T cd07614 93 AGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ--------GK---IPDE-ELR 160 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CC---CchH-HHH
Confidence 5888999999999999999999999999998 999999999999999999999865332 22 1135 999
Q ss_pred HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674 81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 135 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEP 135 (557)
.|.++|+|=.-.++=++..+... |-+.|.. ==.|||+||++....|+.|=.
T Consensus 161 ~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~----lveAQl~Yh~qa~eiL~~l~~ 214 (223)
T cd07614 161 QAMEKFEESKEVAETSMHNLLETDIEQVSQLSA----LVDAQLDYHRQAVQILDELAE 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 99999998777777777776665 3333321 125899999999999887743
No 18
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=95.01 E-value=0.073 Score=53.07 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=94.5
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
.|.+|.+|-..-+.|=..|-..+..|=+.+ .+++.++---++.-.-||=-|++-.+++ +|. ..+ .++
T Consensus 93 ~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~--------~k~---~~e-E~~ 160 (223)
T cd07615 93 VGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ--------GKI---PDE-EIR 160 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCC---cHH-HHH
Confidence 588888888888888888888888887766 5888888888899999999999865332 221 245 999
Q ss_pred HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
+|.++|+|=.-.++=+.+.++.. |-+.|. .==.|||.|+++.+..|+.|-+-+.
T Consensus 161 ~A~~kfees~E~a~~~M~n~le~e~e~~~~L~----~lv~AQl~Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 161 QAVEKFEESKELAERSMFNFLENDVEQVSQLS----VLIEAALDYHRQSTEILEDLQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888776 333322 2225899999999999999988664
No 19
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=94.97 E-value=0.1 Score=51.81 Aligned_cols=122 Identities=23% Similarity=0.397 Sum_probs=90.7
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
+|.+|-+|-..-+.|=..|-..+-.|=+.+ .+++..+-.-++.-.-+|=-|++.++.+ +|+ ..+ +|+
T Consensus 93 ~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~--------~k~---~ee-El~ 160 (223)
T cd07592 93 VGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQ--------GKG---PDE-ELK 160 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccC---chH-HHH
Confidence 578888888888888888888888888776 5889999999999999999999876322 233 235 899
Q ss_pred HHHHHHHHhHhhhhhhhcccccc--chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQG--QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQG--Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
.|.++|++=.-.++=+++.+... -+-+.|+. ==.|||.||+++.+.|+.|=+.+.
T Consensus 161 ~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~---lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 161 QAEEKFEESKELAENSMFNLLENDVEQVSQLSA---LVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987666666666655553 22122221 225899999999999999877654
No 20
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=94.80 E-value=0.12 Score=51.24 Aligned_cols=117 Identities=14% Similarity=0.230 Sum_probs=89.6
Q ss_pred ccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHHhHhhhhhh
Q 008674 18 SNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFR 96 (557)
Q Consensus 18 shI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~EeAtLfvFR 96 (557)
+++-.+|..|-+...+| |+-|-|-|++.|--.+-|+.++..+-.=-+.| .+.|-.-...+|.+++-.|.+.|-=.||.
T Consensus 88 ~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kk-k~~e~~EA~~~l~~~r~~F~~~sLdYv~q 166 (207)
T cd07635 88 LNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKK-KEPQLQEADVQVEQNRQHFYELSLEYVCK 166 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888898888865 89999999999999999999876533221111 12244444559999999999999999999
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674 97 LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 135 (557)
Q Consensus 97 LKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP 135 (557)
|--|..-+--..|.--..-=-||+.||++|---|+.++|
T Consensus 167 in~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~ 205 (207)
T cd07635 167 LQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 988765555555554445555899999999999998887
No 21
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=93.94 E-value=0.15 Score=50.46 Aligned_cols=117 Identities=14% Similarity=0.213 Sum_probs=91.0
Q ss_pred ccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCC-CccchHHHHHHHHHHHHHhHhhhhh
Q 008674 18 SNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG-ESVSLQQQLQAANDEYEEEARLCVF 95 (557)
Q Consensus 18 shI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~Kg-Es~s~q~QLq~a~~EY~EeAtLfvF 95 (557)
.++-.+|..|-+...+| |+.|-|-|+..|--.+-|+..+..+..= +|+.|. |-.-.+.+|..++-.|+..+-=.||
T Consensus 88 ~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~l--sk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~ 165 (207)
T cd07602 88 ENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNL--STKKKENQLQEADAQLDMERRNFHQASLEYVF 165 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888885 9999999999999999999987654422 233223 2233445899999999999999999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 96 RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 96 RLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
.|.-+..-+--..|.--...=-||+.||++|-.-|..+||.
T Consensus 166 ~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py 206 (207)
T cd07602 166 KLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 99888666666666666667779999999999999999985
No 22
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=93.71 E-value=0.43 Score=47.82 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=87.7
Q ss_pred eeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc---chHHHHHHHHHHHHHhHhhhhhhh
Q 008674 22 LTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV---SLQQQLQAANDEYEEEARLCVFRL 97 (557)
Q Consensus 22 ~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~---s~q~QLq~a~~EY~EeAtLfvFRL 97 (557)
.+|..|-+..++| |+-|-|-|++.|-=.+-||..+..+-. =+|+.+.|-. ... ++..++.-|++-|-=+||.|
T Consensus 90 ~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~--lsk~K~~E~~~eea~~-~v~~tR~~F~~~aLdYv~qL 166 (215)
T cd07631 90 DAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSR--LSKRRENEKVKYEVTE-DVYTSRKKQHQTMMHYFCAL 166 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--CCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3455566666654 788899999999999999998754443 4566666654 345 88889999998888899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhHHhhcc-chhhhhhHHHHHH
Q 008674 98 KSLKQGQYRSLLTQAARHHAAQLNFFRKGFK-SLEAVDTHVRLVA 141 (557)
Q Consensus 98 KSLKQGQ~RSLLTQAARHHAAQL~fFrkgLK-sLEavEPHVk~va 141 (557)
-.|..-+--.+|.--..-==||+.||++|-. .+..+||-++-|+
T Consensus 167 n~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~ 211 (215)
T cd07631 167 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIG 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8886666555665555555689999999999 6669999887664
No 23
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=93.38 E-value=0.51 Score=47.42 Aligned_cols=122 Identities=13% Similarity=0.269 Sum_probs=73.8
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL 79 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL 79 (557)
|.+|.+|-..-+.|=.++-..+..|=..+| ++|..+---.+.-+.||=-|++.+++++ +.|.+.+ ..++.|
T Consensus 99 g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~------kAk~~~~~~~~e~el 172 (229)
T cd07616 99 GETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK------KAKVAEARAAAEQEL 172 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCcchhhcchHHHH
Confidence 444554444444333322224445555555 4555555556677788888988876552 2223322 235599
Q ss_pred HHHHHHHHHhHhhhhhhhcccc--ccchhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674 80 QAANDEYEEEARLCVFRLKSLK--QGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 133 (557)
Q Consensus 80 q~a~~EY~EeAtLfvFRLKSLK--QGQ~RSLLTQAARHHAAQL~fFrkgLKsLEav 133 (557)
+.|.+||++-+-.++=+++.+. ...+-+-|.. ==.|||.+|++.-..|+.|
T Consensus 173 r~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~---lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 173 RITQSEFDRQAEITRLLLEGISSTHAHHLRCLND---FVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777777777 3322222222 2268999999988888765
No 24
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.11 E-value=0.48 Score=47.69 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=83.1
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 81 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~ 81 (557)
|.+|.++-..-+..=..|....-.|=+.+|+ ++..+-.-++.-..||=-|+++++.++. -.+..|.|.+ .. +++.
T Consensus 113 g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~k--a~~~~k~~~~-~~-e~E~ 188 (242)
T cd07600 113 SDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKS--AEPAEKQEAA-RV-EVET 188 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccch-HH-HHHH
Confidence 4455555554445555666777778888888 9999999999999999999999876632 1122343442 22 5666
Q ss_pred HHHHH---HHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674 82 ANDEY---EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 134 (557)
Q Consensus 82 a~~EY---~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavE 134 (557)
|.++| .|+|..+.+.+ |+...+-+ +=.-=..|||.+|+++.+.|+.+-
T Consensus 189 aEdef~~a~E~a~~~M~~i--l~~~e~i~---~L~~fv~AQl~Yh~~~~e~L~~l~ 239 (242)
T cd07600 189 AEDEFVSATEEAVELMKEV--LDNPEPLQ---LLKELVKAQLAYHKTAAELLEELL 239 (242)
T ss_pred HHHHHHHhHHHHHHHHHHH--HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666 56777666666 44443333 334456789999999999998764
No 25
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=92.99 E-value=0.56 Score=47.04 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=94.8
Q ss_pred CcchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCC-----CCCCCCccc
Q 008674 1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKS-----KSGKGESVS 74 (557)
Q Consensus 1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrs-----k~~KgEs~s 74 (557)
+.|.+|.+|-..-..|=..|-..+-.|=..+| +||.++---++.-.-+|--|++.+++++.=-|+ -.+|.+.
T Consensus 85 ~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~-- 162 (244)
T cd07595 85 LCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDA-- 162 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccch--
Confidence 35888999988889999999899999988888 588888888999999999999998776421111 1244443
Q ss_pred hHHHHHHHHHHHHHhHhhhhhhhccccc---cchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674 75 LQQQLQAANDEYEEEARLCVFRLKSLKQ---GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 139 (557)
Q Consensus 75 ~q~QLq~a~~EY~EeAtLfvFRLKSLKQ---GQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~ 139 (557)
.+.++..|.++|.+---.++=++..+.. -+.+.|. .=-.|||.|||+++..|+.+=|-+.-
T Consensus 163 l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~----~lv~aQl~YH~~a~e~L~~l~~~l~~ 226 (244)
T cd07595 163 LKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLI----DLIEAQREYHRTALSVLEAVLPELQE 226 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2336788888777654444444444433 2333332 34579999999999999998876653
No 26
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.47 E-value=0.57 Score=46.12 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=92.8
Q ss_pred HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHH
Q 008674 8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEY 86 (557)
Q Consensus 8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY 86 (557)
||-..-+..++++-.+|..|-+..++ +|+-|-|-|+..|-=.+-|+..+..+-.= +|+--.|---..++|.+++--|
T Consensus 72 ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~--~k~k~~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 72 EMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQV--QRNKQHEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccC--CcCchHHHHHHHHHHHHHHHHH
Confidence 44455556677888889999888876 58999999999998888777765322221 2211112222224899999999
Q ss_pred HHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 87 EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 87 ~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
+.-|-=.|+.|.-|..-+--.+|.--...=-||+.||++|---|..+||+
T Consensus 150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py 199 (200)
T cd07638 150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 99998899999887666655566555666678999999999999999986
No 27
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=90.64 E-value=1.1 Score=51.97 Aligned_cols=138 Identities=22% Similarity=0.305 Sum_probs=103.8
Q ss_pred hhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHH
Q 008674 4 EVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAA 82 (557)
Q Consensus 4 KvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a 82 (557)
++=-||-++-+.+++++-++|--|-..+.| +|+-|-+.|++-|-+.+-|+..++.+-+=-+.|..|.=.-..+ -|.++
T Consensus 87 ~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~-~l~~~ 165 (785)
T KOG0521|consen 87 KVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEE-ELAAA 165 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHH-HHHHH
Confidence 344578888889999999999999999887 5999999999999999999998875544333332333222344 67888
Q ss_pred HHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHh
Q 008674 83 NDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE 142 (557)
Q Consensus 83 ~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE 142 (557)
+-.|+--+-=.+.-|--+..-+--.+|.-.-.===||.+||++|.+-++-+||-.+-|+.
T Consensus 166 r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~ 225 (785)
T KOG0521|consen 166 RRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVAT 225 (785)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHH
Confidence 888877666666666666666666666666666668999999999999999998876654
No 28
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=90.36 E-value=1.3 Score=44.56 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=88.9
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHH-HHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSES-LLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSES-LLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
.|.++.+|-..-+.|-..|-..+-.|=+. +.++|.++---.+.-.-||=-|++-++++ +|. ..+ +|+
T Consensus 93 ~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~--------~k~---~ee-Elr 160 (223)
T cd07613 93 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQ--------GKI---PDE-ELR 160 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC--------CCC---cHH-HHH
Confidence 47788888888888888888888888888 55899999999999999999999854333 111 245 999
Q ss_pred HHHHHHHHhHhhhhhhhcccccc-----chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQG-----QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 137 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQG-----Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV 137 (557)
.|.++|+|=+-.+.=+.+.|... +...-| =.|||.||++....|+.|-+-+
T Consensus 161 ~A~~kFees~E~a~~~M~n~l~~e~e~~~~L~~f------veAQl~Yh~qa~eiL~~l~~~l 216 (223)
T cd07613 161 QALEKFDESKEIAESSMFNLLEMDIEQVSQLSAL------VQAQLEYHKQATQILQQVTVKL 216 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998777777555544443 222222 2489999999999999887654
No 29
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=88.70 E-value=1.2 Score=44.18 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=84.8
Q ss_pred eeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCC-CccchHHHHHHHHHHHHHhHhhhhhhhcc
Q 008674 22 LTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG-ESVSLQQQLQAANDEYEEEARLCVFRLKS 99 (557)
Q Consensus 22 ~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~Kg-Es~s~q~QLq~a~~EY~EeAtLfvFRLKS 99 (557)
.+|..|-+.+++| |+-|-|-|++.|.-.+-|+.++...-. =++..|. |-.-..+||.+.+-.|.+.|-=.||.|--
T Consensus 92 ~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~--ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~ 169 (207)
T cd07636 92 EVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLN--LSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQE 169 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhc--CcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777764 899999999999999999998754433 2333444 33345569999999999999999999887
Q ss_pred ccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674 100 LKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 135 (557)
Q Consensus 100 LKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP 135 (557)
+..-+--..|.--.+-=-||+-||+.|---|+.++|
T Consensus 170 vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~ 205 (207)
T cd07636 170 VQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 766555555555555566899999999999988876
No 30
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.31 E-value=2.9 Score=41.86 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=83.2
Q ss_pred HHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC--c--cchHHHHHHHHH
Q 008674 9 LQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE--S--VSLQQQLQAAND 84 (557)
Q Consensus 9 LqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE--s--~s~q~QLq~a~~ 84 (557)
|+.++.-+=..|-.||..|-..+++-...|.++-..=+.|-.=|+.+++.++ |=..|-.|+. . .-.+++|+.|..
T Consensus 81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~-kl~~K~~k~~~~~KL~kae~el~~Ak~ 159 (225)
T cd07590 81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVE-KLAEKEKTGPNLAKLEQAEKALAAARA 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHhCccCChhHHHHHHHHHHHHHHHH
Confidence 3333333333444677888889999999999998888888888998887543 2222322221 1 113348999999
Q ss_pred HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHH
Q 008674 85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA 141 (557)
Q Consensus 85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~va 141 (557)
+|++--....==|-.|=+++.-=+-.-=.-=-.+|+.||..+=|.|..|.+.+..-+
T Consensus 160 ~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 160 DFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 998766655544444444432211111111235799999999999999887665433
No 31
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=85.01 E-value=2.6 Score=42.51 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred cceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC-CCCCCccchHHHHHHHHHHHHHhHhhhhhh
Q 008674 19 NIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK-SGKGESVSLQQQLQAANDEYEEEARLCVFR 96 (557)
Q Consensus 19 hI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk-~~KgEs~s~q~QLq~a~~EY~EeAtLfvFR 96 (557)
++-.+|..|=+...+ +|+.|-|.|++.|-=++-|+..+..+-.=-|.| +-+-|.-... ||..++.-|.+-|.=+||-
T Consensus 87 qaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~-~l~~sRr~F~~~ALdYV~q 165 (215)
T cd07632 87 QLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAK-EVAYSRRKQHLSSLQYYCA 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444455788888776 599999999999999999999887665544444 2233443445 7999999999999999998
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhHHhhccch
Q 008674 97 LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 130 (557)
Q Consensus 97 LKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL 130 (557)
|-.|..-+--.+|.---.-==||..||++|--.+
T Consensus 166 iN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~ 199 (215)
T cd07632 166 LNALQYRKRVAMLEPMLGYTHGQINFFKKGAELF 199 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877554444444333333447999999996443
No 32
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=83.91 E-value=7.2 Score=39.31 Aligned_cols=115 Identities=17% Similarity=0.325 Sum_probs=80.6
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
.|.++.+|-..-+.|=..|-...-.|=..+|+ +|+.+---.+.-..||=-|++-+++++. . .+ +|+
T Consensus 98 ~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~k--------a----e~-elr 164 (220)
T cd07617 98 VGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKK--------A----EH-ELR 164 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c----HH-HHH
Confidence 36677777777777777777777777776666 7777777777788888899998765522 2 34 899
Q ss_pred HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674 81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAV 133 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEav 133 (557)
.|.++|+|-+-++.=.++.++.. |-+.| +-==.|||.||++.-..|+.|
T Consensus 165 ~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L----~~lv~AQl~Yh~q~~e~L~~l 216 (220)
T cd07617 165 VAQTEFDRQAEVTRLLLEGISSTHVNHLRCL----HEFVEAQATYYAQCYRHMLDL 216 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766554445555554 22222 222368999999998888765
No 33
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.97 E-value=7.7 Score=39.01 Aligned_cols=120 Identities=8% Similarity=0.119 Sum_probs=86.7
Q ss_pred hhhcccee----eccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHHh
Q 008674 15 NYRSNIFL----TITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEE 89 (557)
Q Consensus 15 ~YRshI~~----TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~Ee 89 (557)
.||..+|. +|..|=+..++| ++.|-|-|++.|..++-|+.++...-.= -+|+--.|-.-...||.+.+..|.+.
T Consensus 81 ~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~-s~k~K~~e~eEA~~~L~~~r~~F~~~ 159 (207)
T cd07633 81 EERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNL-SSKKKESQLQEADLQVDKERQNFYES 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcc-cccCCchHHHHHHHHHHHHHHHHHHH
Confidence 45655553 455666777665 8899999999999999999986433322 12222224444555899999999999
Q ss_pred HhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674 90 ARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 135 (557)
Q Consensus 90 AtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP 135 (557)
|-=+||.|--|..-+--..|.---.-=-||+-||..|--.+..++|
T Consensus 160 aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~ 205 (207)
T cd07633 160 SLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 9999999888766555555554445556899999999998888877
No 34
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.17 E-value=15 Score=37.76 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=85.6
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCC-----CCCccchH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG-----KGESVSLQ 76 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~-----KgEs~s~q 76 (557)
|-+|-+|-.-.+.+=.+|=..+-.|=-.+|+ +|.++---++.-..+|-=|++.+++++--.++.+| .+.. ..+
T Consensus 87 gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~-k~e 165 (248)
T cd07619 87 GETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGA-KAD 165 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCC-ccH
Confidence 5566666666667777777777777777776 88888888899999999999988776532111110 0111 123
Q ss_pred HHHHHHHHHHHHhHhhh---------hhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHh
Q 008674 77 QQLQAANDEYEEEARLC---------VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE 142 (557)
Q Consensus 77 ~QLq~a~~EY~EeAtLf---------vFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE 142 (557)
+|+.+.++++++=.+| .|==+-+.+-....- ==.|||.|+|+++..||.+=|-|+...+
T Consensus 166 -~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~------Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 166 -ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQT------LIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666554444 443344444333222 2358999999999999999888876544
No 35
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=73.07 E-value=22 Score=36.30 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=68.9
Q ss_pred hHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC-------CCCCccchHH
Q 008674 6 QFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS-------GKGESVSLQQ 77 (557)
Q Consensus 6 QfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~-------~KgEs~s~q~ 77 (557)
|-.|-.....+=.+|-..+..|=-.+| +||.++---+++-.-+|-=|++.+++++.--++-+ +|.+. .+.
T Consensus 90 ~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~--l~e 167 (246)
T cd07618 90 ENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDM--LKE 167 (246)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhh--hHH
Confidence 333333333344444443434433333 34556666677777778889998877643222111 22111 122
Q ss_pred HHHHHHHHHHH-----hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHh
Q 008674 78 QLQAANDEYEE-----EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE 142 (557)
Q Consensus 78 QLq~a~~EY~E-----eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE 142 (557)
++.+|+.+|++ ++-+|.|=++--.+-+...-| =.||+.+||+++..||.+=|-++...+
T Consensus 168 e~e~a~~k~E~~kD~~~~dm~~~l~~e~e~~~~l~~l------v~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 168 EMDEAGNKVEQCKDQLAADMYNFASKEGEYAKFFVLL------LEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 234556644443333322222 257999999999999999988776544
No 36
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.25 E-value=19 Score=37.28 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=85.1
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcC----C------------
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGK----S------------ 65 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGr----s------------ 65 (557)
|-.|-+|-...+.|-.+|=+.|--|=-.|+ +||..+---|++--..|-=|++.+.+|-...+ +
T Consensus 87 ~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~ 166 (257)
T cd07620 87 CFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQG 166 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCcccccccccccc
Confidence 445677777888888877777777744444 45555556677777777789998877733211 1
Q ss_pred --CCCCCCccchHHHHHHHHHHHHH-----hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 66 --KSGKGESVSLQQQLQAANDEYEE-----EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 66 --k~~KgEs~s~q~QLq~a~~EY~E-----eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
..+|+|.. -+ ++..|...|++ +|-||-|-=|--.|.....-|.+ ||+.|.|++|.+||++=|-+|
T Consensus 167 ~~~~~K~~~l-ke-E~eea~~K~E~~kd~~~a~Mynfl~kE~e~a~~l~~lve------aQ~~YHrqsl~~Le~~l~~~~ 238 (257)
T cd07620 167 IRRANKGEPL-KE-EEEECWRKLEQCKDQYSADLYHFATKEDSYANYFIRLLE------LQAEYHKNSLEFLDKNITELK 238 (257)
T ss_pred cccccccccc-HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 12666664 33 67777666654 35566665555444444333433 699999999999999988877
Q ss_pred H
Q 008674 139 L 139 (557)
Q Consensus 139 ~ 139 (557)
-
T Consensus 239 ~ 239 (257)
T cd07620 239 E 239 (257)
T ss_pred H
Confidence 4
No 37
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=68.71 E-value=21 Score=35.46 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=78.1
Q ss_pred hhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHH---HhhcCCCCCCCCcc--chHHHH
Q 008674 5 VQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQ---REKGKSKSGKGESV--SLQQQL 79 (557)
Q Consensus 5 vQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~---~eKGrsk~~KgEs~--s~q~QL 79 (557)
+.-....++..|-.-|-.||..|-..+++-...|.++=+-++.|.-=|+.+++.+ .+|.. |.|.- -.|++|
T Consensus 73 v~e~~d~~~~~l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~----kde~KL~kae~el 148 (211)
T cd07588 73 IFEQLDLLWNDLEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKK----VDDQKLTKAEEEL 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhccc----ccHhhHHHHHHHH
Confidence 3344556666776667789999999999999999999999999999999988743 34433 44431 133489
Q ss_pred HHHHHHHHHhHhhhhhhhccccccc-------hhhHHHHHHHHHHHHHHhHHhhccch
Q 008674 80 QAANDEYEEEARLCVFRLKSLKQGQ-------YRSLLTQAARHHAAQLNFFRKGFKSL 130 (557)
Q Consensus 80 q~a~~EY~EeAtLfvFRLKSLKQGQ-------~RSLLTQAARHHAAQL~fFrkgLKsL 130 (557)
+.|.++|++--..+.==|-.|=+.+ |.||. .+|+.||+.--|-.
T Consensus 149 ~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~-------~~q~~F~~e~~~~~ 199 (211)
T cd07588 149 QQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIF-------AAESVFHKEIGKVN 199 (211)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 9999999877666554444443333 34443 35777777554433
No 38
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=67.78 E-value=34 Score=35.90 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=65.1
Q ss_pred CcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHH---HhHhhhhhhhccccc
Q 008674 27 PSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYE---EEARLCVFRLKSLKQ 102 (557)
Q Consensus 27 PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~---EeAtLfvFRLKSLKQ 102 (557)
|=...|| .+.-+-+.++....+|--|+.||+.++.+ .+.-|-|. ...+|..|.|||- |||..+.=.+ |.-
T Consensus 182 ~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~--~~pekee~--~r~~lE~aEDeFv~aTeeAv~~Mk~v--l~~ 255 (289)
T PF10455_consen 182 KLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNK--AKPEKEEQ--LRVELEQAEDEFVSATEEAVEVMKEV--LDN 255 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCcccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--hcC
Confidence 4444343 46677888899999999999998666554 34444442 2336888889885 5665543332 333
Q ss_pred cchhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674 103 GQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 133 (557)
Q Consensus 103 GQ~RSLLTQAARHHAAQL~fFrkgLKsLEav 133 (557)
-.+-.+|- -=++|||.||+++.+.|+++
T Consensus 256 ~e~l~~Lk---~lv~AQl~Yhk~aae~L~~~ 283 (289)
T PF10455_consen 256 SEPLRLLK---ELVKAQLEYHKKAAEALSEL 283 (289)
T ss_pred cchHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444443 34689999999999999876
No 39
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=67.69 E-value=27 Score=34.65 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=74.8
Q ss_pred eeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCc--cchHHHHHHHHHHHHHhHhhhhhhhc
Q 008674 21 FLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEEEARLCVFRLK 98 (557)
Q Consensus 21 ~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs--~s~q~QLq~a~~EY~EeAtLfvFRLK 98 (557)
-.++..|-..+++-+..|.++=+..+.|+-=|+.+++.+. |=+.|.+|.|. ...+++|+.|.++|++--..+.=-|-
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~-kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP 172 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVR-KLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELP 172 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHH-HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3466778888888888888888888889989998876544 33334444431 22455889999999876555544444
Q ss_pred cccccchhhHHHHHHH-HHHHHHHhHHhhccchhhhhhHH
Q 008674 99 SLKQGQYRSLLTQAAR-HHAAQLNFFRKGFKSLEAVDTHV 137 (557)
Q Consensus 99 SLKQGQ~RSLLTQAAR-HHAAQL~fFrkgLKsLEavEPHV 137 (557)
.|=+.++ ++|...-. --..|++||..+..-|..+-...
T Consensus 173 ~l~~~r~-~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~ 211 (224)
T cd07591 173 QLVDLRI-PYLDPSFEAFVKIQLRFFTEGYERLAQVQRYL 211 (224)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4433222 22322222 23569999999998888776543
No 40
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=58.63 E-value=16 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.5
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 008674 36 RTVEDMKRQCDEKRNVCEYVMAQQREKG 63 (557)
Q Consensus 36 rtVEEMKrQCDeKR~vYE~M~a~~~eKG 63 (557)
+.+ +++|+.|-||++|+.++.++.|.-
T Consensus 5 ~~l-~L~R~~~~~~~~Y~~Ll~r~~e~~ 31 (82)
T PF13807_consen 5 EYL-RLQRDVEIKRELYETLLQRYEEAR 31 (82)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 899999999999999987777643
No 41
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=57.04 E-value=1.1e+02 Score=26.20 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHhhhhccceeeccCCcHHHHHHhh-hHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHH
Q 008674 10 QKLVDNYRSNIFLTITNPSESLLNELR-TVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEE 88 (557)
Q Consensus 10 qKlvD~YRshI~~TIT~PSESLLnELr-tVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~E 88 (557)
+.-+..+|..+..-|.++.+.-.+++. .+++-..++++--+.|+.+ .. +..|.-..+ +++.+.++|.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~-~~~~~~~~y~~ 123 (181)
T PF12729_consen 55 RSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEKL-------IL---SPEEKQLLE-EFKEAWKAYRK 123 (181)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cC---CHHHHHHHH-HHHHHHHHHHH
Confidence 333445566666666666666555443 3555555555544444443 22 223444566 88899999966
Q ss_pred hHhhhhhhhccccccchh---hHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHhh
Q 008674 89 EARLCVFRLKSLKQGQYR---SLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAER 143 (557)
Q Consensus 89 eAtLfvFRLKSLKQGQ~R---SLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE~ 143 (557)
..-=++ .-.++|... .++.+-++ ..|.+-.+.|+++--+..-.|++
T Consensus 124 ~~~~~~---~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~a~~ 172 (181)
T PF12729_consen 124 LRDQVI---ELAKSGDNDEARAILNGEAR------PAFDELRDALDELIEYNNQQAEQ 172 (181)
T ss_pred HHHHHH---HHHHCCCHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 233444432 22222222 44555555666555555544443
No 42
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=54.71 E-value=20 Score=34.18 Aligned_cols=52 Identities=37% Similarity=0.385 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhhcccee----eccCCcH----------------HHHHHhhhH-------HHHHHHhhhHHHHHHHHHH
Q 008674 6 QFELQKLVDNYRSNIFL----TITNPSE----------------SLLNELRTV-------EDMKRQCDEKRNVCEYVMA 57 (557)
Q Consensus 6 QfELqKlvD~YRshI~~----TIT~PSE----------------SLLnELrtV-------EEMKrQCDeKR~vYE~M~a 57 (557)
..||.||..++=.+.++ -+.+|+. -||||+|-. .-|++|.++||+..+.|+.
T Consensus 74 ~~eLkkL~~sll~nfleLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i~~ 152 (162)
T PF05983_consen 74 KKELKKLNKSLLLNFLELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEIRK 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998887776654 3456662 488999854 3499999999999999974
No 43
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.50 E-value=46 Score=33.30 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=50.4
Q ss_pred ccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHHHHHhHhhhhhhhcccc
Q 008674 24 ITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDEYEEEARLCVFRLKSLK 101 (557)
Q Consensus 24 IT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-s~q~QLq~a~~EY~EeAtLfvFRLKSLK 101 (557)
|..|=+.+++ .|+.+-|.|++-|.=.+-|+.|++.|-.=.++| +-..+ -.-.||-+++..|.+.|.=|++.+-.|+
T Consensus 90 ~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K--~p~~l~Eda~qL~e~Rk~Y~~aSLDyv~qi~~lq 167 (214)
T cd07609 90 ILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTK--EPSSLREDAFQLFEARKAYLKASLDLVIAIPQLR 167 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 367788899999998999999999888777776 11111 0113777888888877777776554443
No 44
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=49.02 E-value=53 Score=31.76 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=76.5
Q ss_pred HHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHHhH
Q 008674 11 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEA 90 (557)
Q Consensus 11 KlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~EeA 90 (557)
.++..|-..|-.++..|-..|++=+.-+-.+=+..+.|.-=|+..++.. +| .+| .++.++.|.++|+.--
T Consensus 77 ~~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~-~k----~~k-----~e~~l~~a~~~y~~lN 146 (195)
T cd07589 77 KALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKK-ER----GGK-----VDEELEEAANQYEALN 146 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHH-Hh----hcc-----hHHHHHHHHHHHHHHH
Confidence 4566777777788888999999888888888888888888899877543 33 233 3348999999998777
Q ss_pred hhhhhhhccccccchhhHHHHHHHHH-HHHHHhHHhhccch
Q 008674 91 RLCVFRLKSLKQGQYRSLLTQAARHH-AAQLNFFRKGFKSL 130 (557)
Q Consensus 91 tLfvFRLKSLKQGQ~RSLLTQAARHH-AAQL~fFrkgLKsL 130 (557)
....=-|--|-++.. ++|...-.-- ..|++||+...+-.
T Consensus 147 ~~L~~ELP~l~~~~~-~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 147 AQLKEELPKFNQLTA-QLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766666665555543 3444443333 35999999887743
No 45
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=41.00 E-value=52 Score=33.14 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCc--cchHHHHHHHHHHHHHh
Q 008674 12 LVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEEE 89 (557)
Q Consensus 12 lvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs--~s~q~QLq~a~~EY~Ee 89 (557)
+|..|..-++..|-.|-+.+++=.-.|.++=.-=+.|--=|..+++.+ +|=..|.+|.|. .-.|++|+.|..+|++-
T Consensus 80 ~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~-~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~l 158 (211)
T cd07611 80 LWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHL-EALQTSKRKDEGRIAKAEEEFQKAQKVFEEF 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555777777788777777777666667777788887644 444455578887 55667999999999865
Q ss_pred Hhhhhhhhcccccc-------chhhHHHHHHHHHHHHHHhHHhhccc
Q 008674 90 ARLCVFRLKSLKQG-------QYRSLLTQAARHHAAQLNFFRKGFKS 129 (557)
Q Consensus 90 AtLfvFRLKSLKQG-------Q~RSLLTQAARHHAAQL~fFrkgLKs 129 (557)
-....==|--|=++ =|.+|+ .+|+.||+.--|-
T Consensus 159 N~~Lk~ELP~L~~~Ri~f~~psFeal~-------~~q~~f~~E~~k~ 198 (211)
T cd07611 159 NVDLQEELPSLWSRRVGFYVNTFKNVS-------SLEAKFHKEISVL 198 (211)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhHHHHH-------HHHHHHHHHHHHH
Confidence 54443333333322 244554 4677777765553
No 46
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=37.81 E-value=41 Score=31.03 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHH
Q 008674 5 VQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYV 55 (557)
Q Consensus 5 vQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M 55 (557)
||-||+++.+.|-.=+-.+-.-|--++---+.++|.|+.--|.=|..|--.
T Consensus 10 Vq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl 60 (108)
T PF08855_consen 10 VQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRL 60 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999989988888899999999999999999888877554
No 47
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=35.32 E-value=1.6e+02 Score=29.78 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=69.3
Q ss_pred HHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCc--cchHHHHHHHHHHHHH
Q 008674 11 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEE 88 (557)
Q Consensus 11 KlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs--~s~q~QLq~a~~EY~E 88 (557)
.++..|..-+-.|+..|=+.+++=.-.|.++=.-=+.|--=|+.+++.+ +|-+.|..|.|. .-.|++|+.|..+|++
T Consensus 79 ~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~-~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~ 157 (211)
T cd07612 79 LLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHL-EALQNAKKKDDAKIAKAEEEFNRAQVVFED 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777788777777776555555555676677533 233333335555 3455599999999987
Q ss_pred hHhhhhhhhccccccc---hhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674 89 EARLCVFRLKSLKQGQ---YRSLLTQAARHHAAQLNFFRKGFKSLEAV 133 (557)
Q Consensus 89 eAtLfvFRLKSLKQGQ---~RSLLTQAARHHAAQL~fFrkgLKsLEav 133 (557)
--....==|--|=+.+ +...|.-- =.+|+.||+.--|-...+
T Consensus 158 lN~~L~~ELP~L~~~Ri~f~~psFeal---~~~q~~F~~E~~k~~~~l 202 (211)
T cd07612 158 INRELREELPILYDSRIGCYVTVFQNI---SNLRDTFYKEMSKLNHDL 202 (211)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 6555443333333322 22222211 147888887665544433
No 48
>KOG3438 consensus DNA-directed RNA polymerase, subunit L [Transcription]
Probab=32.92 E-value=53 Score=30.33 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=27.2
Q ss_pred eeccCCcHHHHH-------HhhhHHHHHHHhhhHHHHHHHHHH
Q 008674 22 LTITNPSESLLN-------ELRTVEDMKRQCDEKRNVCEYVMA 57 (557)
Q Consensus 22 ~TIT~PSESLLn-------ELrtVEEMKrQCDeKR~vYE~M~a 57 (557)
.||.-|||..+| .++.||-+|+-|+|==+++++.+.
T Consensus 48 YtIPHPse~k~niRIQt~~~~~A~evl~kgl~el~~~c~~v~~ 90 (105)
T KOG3438|consen 48 YTIPHPSEDKINIRIQTRDGDPAVEVLKKGLEELMQLCDHVRS 90 (105)
T ss_pred ccCCCCchhhheEEEEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 589999999987 777787777777666666666653
No 49
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=31.98 E-value=74 Score=33.25 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=23.8
Q ss_pred HHHHHHhhhhccceeeccCCcHHHHHHhhhHH
Q 008674 8 ELQKLVDNYRSNIFLTITNPSESLLNELRTVE 39 (557)
Q Consensus 8 ELqKlvD~YRshI~~TIT~PSESLLnELrtVE 39 (557)
||.| .|.|+..|-.+|.. -+.||+||++.-
T Consensus 245 eL~k-f~~~~~~v~~~~~~-Q~~ll~~i~~~n 274 (339)
T cd09238 245 ELKK-YDSVREAVSKNISS-QDDLLSRLRALN 274 (339)
T ss_pred HHHH-HhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8887 88888888888776 677888887654
No 50
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=30.75 E-value=45 Score=35.89 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHhHHhhccchhhhhhHHHHHHhhhcccccccCCCCCCCCCCCCccccCCCcceeeeeccccccccccccCCCcc
Q 008674 115 HHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSM 194 (557)
Q Consensus 115 HHAAQL~fFrkgLKsLEavEPHVk~vaE~QHIDy~fSgLedd~~d~de~~~d~~ddgELSFDY~~N~~~~~~~~~sr~sm 194 (557)
-|.|||.-|..-=+-+-++|. |-+-. .++++ ++++++|+||+++. ||=- +.++.+-|
T Consensus 259 AqSAQMYHYQHQKQQMiamEk---------~~~~~-~~~~~------~~sdeeneeGDfTV-YECP------GLAPTGeM 315 (341)
T PF06809_consen 259 AQSAQMYHYQHQKQQMIAMEK---------HKEEP-KELDS------DSSDEENEEGDFTV-YECP------GLAPTGEM 315 (341)
T ss_pred HHHHHHHHHHHHHHHHHhhcc---------cCCCC-Ccccc------ccccccccCCCeeE-EeCC------CCCCCCce
Confidence 378899888765555555553 33211 01111 12334566666664 5544 46777888
Q ss_pred cc
Q 008674 195 EV 196 (557)
Q Consensus 195 el 196 (557)
||
T Consensus 316 EV 317 (341)
T PF06809_consen 316 EV 317 (341)
T ss_pred ee
Confidence 84
No 51
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=29.31 E-value=50 Score=36.75 Aligned_cols=48 Identities=21% Similarity=0.059 Sum_probs=32.1
Q ss_pred HhhhcccccccCCCCCCCCCCCCccccCCCcceeeeeccccccccccc
Q 008674 141 AERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVS 188 (557)
Q Consensus 141 aE~QHIDy~fSgLedd~~d~de~~~d~~ddgELSFDY~~N~~~~~~~~ 188 (557)
+..-|-||.=|+-|||+...+.+.+...|...++||-++|++..+|-.
T Consensus 225 ~~~g~~d~~ss~~ed~g~pe~~~~dkh~ds~d~a~~~~i~e~~~~v~~ 272 (487)
T KOG4672|consen 225 KPPGPPDGLSSNFEDSGEPEEEGHDKHYDSIDLAPDNRINENITSVPL 272 (487)
T ss_pred CCCCCCccccCCCCCCCCccccccccccccccccchhccccccccccc
Confidence 345688888888888876655543334444458999899988666433
No 52
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=27.91 E-value=1.7e+02 Score=28.32 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=70.5
Q ss_pred HHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHh-hcC--CCCCCCCc--cchHHHHHH
Q 008674 7 FELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRE-KGK--SKSGKGES--VSLQQQLQA 81 (557)
Q Consensus 7 fELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~e-KGr--sk~~KgEs--~s~q~QLq~ 81 (557)
.+|...++.|+. ++..|-..+++-+..|..+=+.++.|+-=|+.++..... .+. .+..|.+. ...|.+|+.
T Consensus 85 ~~~~~~l~~i~~----~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~ 160 (216)
T cd07599 85 KELLEELEFFEE----RVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEE 160 (216)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Confidence 344444554444 566677788888888999999999999999998875544 222 12334332 223448888
Q ss_pred HHHHHHHhHhhhhhhhccccccchhhHHHHHHH-HHHHHHHhHHhhccchh
Q 008674 82 ANDEYEEEARLCVFRLKSLKQGQYRSLLTQAAR-HHAAQLNFFRKGFKSLE 131 (557)
Q Consensus 82 a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAAR-HHAAQL~fFrkgLKsLE 131 (557)
|.++|++--..+.=-|--|=+. ..+++..--. .--.||+||...-..|+
T Consensus 161 a~~~y~~lN~~Lk~eLP~l~~~-~~~~~~~~~~~~~~~ql~~~~~~~~~l~ 210 (216)
T cd07599 161 AKEEYEALNELLKSELPKLLAL-ADEFLPPLFKSFYYIQLNIYYTLHEYLQ 210 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877655544444333221 1222222211 11228888887655543
No 53
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.90 E-value=3.6e+02 Score=24.82 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhHhhhhh---hhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674 76 QQQLQAANDEYEEEARLCVF---RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 136 (557)
Q Consensus 76 q~QLq~a~~EY~EeAtLfvF---RLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH 136 (557)
+++++.+.++|+.=..-+.- |+..-|+--++.+|..-|+. |+.|+++.+..+|.+-|+
T Consensus 158 e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~---qi~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 158 ESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARL---QVQYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCC
Confidence 34666777777654333322 22333344455555544443 677899888888877653
No 54
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.02 E-value=94 Score=33.30 Aligned_cols=63 Identities=11% Similarity=0.259 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhhhhccce-------------eeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC
Q 008674 4 EVQFELQKLVDNYRSNIF-------------LTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK 66 (557)
Q Consensus 4 KvQfELqKlvD~YRshI~-------------~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk 66 (557)
..+-|++++..+|+.++- .-+..=...+-+-.+...|++|+..-+|.+||.++.+|+|=...+
T Consensus 328 ~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 328 QIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777511 111111122222345667899999999999999999888765444
No 55
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=1e+02 Score=29.61 Aligned_cols=43 Identities=23% Similarity=0.499 Sum_probs=27.5
Q ss_pred hhhHHHHHH---HhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHH
Q 008674 4 EVQFELQKL---VDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 56 (557)
Q Consensus 4 KvQfELqKl---vD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~ 56 (557)
|+|.||+|+ +|+||--|..-.. ++-|=.|.-.--=+.||+||-
T Consensus 38 ~~q~ELe~~K~~ld~~rqel~~HFa----------~sAeLlktl~~dYqklyqHmA 83 (138)
T COG3105 38 KLQYELEKVKAQLDEYRQELVKHFA----------RSAELLKTLAQDYQKLYQHMA 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 689999887 6788865543321 233333444455688999995
No 56
>PHA03190 UL14 tegument protein; Provisional
Probab=22.80 E-value=1e+02 Score=31.12 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhHhhhhhhhcccccc------chhhHHHHHHHHHHH-HHHhHHhhccchhhhhhHHHHHHh
Q 008674 78 QLQAANDEYEEEARLCVFRLKSLKQG------QYRSLLTQAARHHAA-QLNFFRKGFKSLEAVDTHVRLVAE 142 (557)
Q Consensus 78 QLq~a~~EY~EeAtLfvFRLKSLKQG------Q~RSLLTQAARHHAA-QL~fFrkgLKsLEavEPHVk~vaE 142 (557)
|-++---+|+++...=-=-|-=+.+| -|++.||+|=.+|++ +.++ +--+-||+||.|++.|.+
T Consensus 10 ~ara~~~~y~r~~iyKaRtLdL~r~GV~~~dP~Fv~aFTsAKeA~~~~~~~l--rS~aRle~vrQk~~~Iq~ 79 (196)
T PHA03190 10 QARAEIMEYIKGQAYKAAVIEMMSAGVPPMHPAFRHAFAKAREHEAAAEIAA--QSDKRLSSVRCHIARIKA 79 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33444556776653322223334455 488999999999976 3332 444669999999998854
No 57
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.68 E-value=1.1e+02 Score=28.55 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=30.3
Q ss_pred cHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcC
Q 008674 28 SESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGK 64 (557)
Q Consensus 28 SESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGr 64 (557)
.+-+.++|...|+.+++-++.++.||.-++.-+++.+
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~ 91 (156)
T CHL00118 55 KEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQ 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999998876655443
No 58
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.18 E-value=6e+02 Score=26.87 Aligned_cols=98 Identities=30% Similarity=0.376 Sum_probs=55.4
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHh-hhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQC-DEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 81 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQC-DeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~ 81 (557)
|.+|-.+-.-+|.||.| ||.+|..|+==+.- |.|+.+-.-+ +..+.|+ ..+.|- ..++|||..
T Consensus 113 ge~e~~~a~~~d~yR~~------------LK~IR~~E~sl~p~R~~r~~l~d~I-~kLk~k~-P~s~kl--~~LeqELvr 176 (271)
T PF13805_consen 113 GELEDQYADRLDQYRIH------------LKSIRNREESLQPSRDRRRKLQDEI-AKLKYKD-PQSPKL--VVLEQELVR 176 (271)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--TTTTTH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHhHHHHHHH-HHHHhcC-CCChHH--HHHHHHHHH
Confidence 45555555566666754 89999988755544 4444444433 4455553 223332 346667776
Q ss_pred HHHH-HHHhHhhhhhhhccccccchhhHHHHHHHHHHH
Q 008674 82 ANDE-YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA 118 (557)
Q Consensus 82 a~~E-Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAA 118 (557)
|..| --+||.|--|.=..||++ -.+--.|-+.||-
T Consensus 177 aEae~lvaEAqL~n~kR~~lKEa--~~~~f~Al~E~aE 212 (271)
T PF13805_consen 177 AEAENLVAEAQLSNIKRQKLKEA--YSLKFDALIERAE 212 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHH
Confidence 6543 457777777766666654 2333445555555
No 59
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=21.38 E-value=30 Score=27.63 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=16.8
Q ss_pred HhHHhhccchhhhhhHHHHHHhhhccc
Q 008674 121 NFFRKGFKSLEAVDTHVRLVAERQHID 147 (557)
Q Consensus 121 ~fFrkgLKsLEavEPHVk~vaE~QHID 147 (557)
.+|.+|+++||+|..+=..+...|+|-
T Consensus 17 ~w~~~G~rtl~Dl~~~~~~Lt~~Q~iG 43 (52)
T PF10391_consen 17 KWYAKGIRTLEDLRKSKSKLTWQQQIG 43 (52)
T ss_dssp HHHHTT--SHHHHHHGGCGS-HHHHHH
T ss_pred HHHHhCCCCHHHHhhhhccCCHHHHHH
Confidence 478899999999975322566667663
No 60
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.21 E-value=5.4e+02 Score=29.22 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhHhhh---hhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHH
Q 008674 65 SKSGKGESVSLQQQLQAANDEYEEEARLC---VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA 141 (557)
Q Consensus 65 sk~~KgEs~s~q~QLq~a~~EY~EeAtLf---vFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~va 141 (557)
.|.-+-+.-..+ ||+.|+.+|++--..+ ..+|=++..|=+--+|--- -.+|++||+-+-|--+-+. +|..=-
T Consensus 153 ~kd~~k~~KAee-El~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl---~~~q~vf~~Emskl~~~L~-~v~~kl 227 (460)
T KOG3771|consen 153 KKDEAKLAKAEE-ELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSL---FNLQLVFHKEMSKLYKNLY-DVLDKL 227 (460)
T ss_pred CCChhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 444444454566 9999999998766554 3555666666555444332 2589999999944433333 222334
Q ss_pred hhhccccccc
Q 008674 142 ERQHIDYQFS 151 (557)
Q Consensus 142 E~QHIDy~fS 151 (557)
++||-|+-|+
T Consensus 228 ~dqh~~~~~~ 237 (460)
T KOG3771|consen 228 FDQHSDKVFT 237 (460)
T ss_pred hccccchhhh
Confidence 6777777776
No 61
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=20.67 E-value=87 Score=32.85 Aligned_cols=43 Identities=40% Similarity=0.471 Sum_probs=34.4
Q ss_pred hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHH
Q 008674 89 EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLV 140 (557)
Q Consensus 89 eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~v 140 (557)
++-+|.+|+|. |.++=|++||+|- |||.-.++|+-.=-|.-+|
T Consensus 29 ~~~~~~~~~~~--------l~~s~~~~~a~~r-~~r~d~~~L~k~p~hl~lv 71 (263)
T KOG2818|consen 29 RLWLFLIRTKN--------LELSKAALHAAQR-LFRTDFSSLKKGPKHLALV 71 (263)
T ss_pred HHHHHHHHhhh--------HHHHHHHHHHHHH-HhhcchhhhhhcchhheEE
Confidence 45578888875 5789999999999 9999999998877666533
Done!