Query 008674
Match_columns 557
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q12_A DIP13 alpha, DCC-intera 98.3 1.2E-06 4.1E-11 83.0 8.9 138 3-142 90-231 (265)
2 4h8s_A DCC-interacting protein 98.1 4.6E-06 1.6E-10 83.4 8.3 136 4-141 114-253 (407)
3 2q13_A DCC-interacting protein 98.1 4.9E-06 1.7E-10 82.6 8.2 137 3-141 90-230 (385)
4 1zww_A SH3-containing GRB2-lik 97.8 3.8E-05 1.3E-09 73.3 8.5 125 2-139 117-242 (256)
5 2z0v_A SH3-containing GRB2-lik 97.8 2.4E-05 8.2E-10 74.2 6.6 125 2-139 101-226 (240)
6 1uru_A Amphiphysin; endocytosi 97.1 0.0035 1.2E-07 57.7 10.7 135 9-144 102-240 (244)
7 2fic_A Bridging integrator 1; 95.8 0.022 7.7E-07 53.2 7.7 127 11-138 119-247 (251)
8 4avm_A Bridging integrator 2; 91.4 1.1 3.8E-05 42.5 10.2 136 8-146 97-235 (237)
9 4a3a_A Amphiphysin; structural 61.7 29 0.00098 33.2 8.5 133 12-147 106-241 (243)
10 1ykh_A RNA polymerase II media 40.0 33 0.0011 30.3 4.6 53 5-57 15-97 (108)
11 3plt_A Sphingolipid long chain 23.0 2E+02 0.0067 28.4 7.3 98 3-118 79-178 (234)
No 1
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=98.34 E-value=1.2e-06 Score=83.04 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=113.0
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL 79 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL 79 (557)
|++..||-.+.+....++-.+|..|-+.++ ++|+.|.|.|+..|..|.-|+.+++.|..-.+.| +.|.. ....+|
T Consensus 90 ~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~~e~~l~Ea~~~l 167 (265)
T 2q12_A 90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDV 167 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cchhhHHHHHHHH
Confidence 555666666666666778888899999999 6799999999999999999999999877666555 34432 233499
Q ss_pred HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchh-hhhhHHHHHHh
Q 008674 80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE-AVDTHVRLVAE 142 (557)
Q Consensus 80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLE-avEPHVk~vaE 142 (557)
.+++..|+.-+-=+++.|.-|+..+--.+|..--...-||+.||++|.+.+. .+||+++.+..
T Consensus 168 ~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~ 231 (265)
T 2q12_A 168 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGT 231 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888999998888766667888888888999999999999994 99999987654
No 2
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=98.13 E-value=4.6e-06 Score=83.39 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=108.6
Q ss_pred hhhHHHHHHHhhhhccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHH
Q 008674 4 EVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQ 80 (557)
Q Consensus 4 KvQfELqKlvD~YRshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s--~q~QLq 80 (557)
++--|+..+.+....++-.+|..|-+.++++ |+.++|+|+++|.-..-|+.+++.|-.-.+. .+.|... ..+||.
T Consensus 114 ~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~--k~~~~~~~e~~~~l~ 191 (407)
T 4h8s_A 114 KVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKK--KENEKVKTEVGKEVA 191 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCST--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCchHHHHHHHHHHH
Confidence 3445555666666677888899999999975 9999999999999999999999888544333 3333321 123899
Q ss_pred HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccch-hhhhhHHHHHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA 141 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL-EavEPHVk~va 141 (557)
+++..|+.-+.=+++.|..|+..+..-+|..-....-||++||+.|...+ +.+||.++.+.
T Consensus 192 ~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~~l~ 253 (407)
T 4h8s_A 192 AARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVA 253 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877777888888888999999999999987 56888876553
No 3
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.12 E-value=4.9e-06 Score=82.60 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=108.9
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL 79 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL 79 (557)
|++..||..+.+....++-.+|..|-+.+++ +|+.+.|.|+..|..+.-|+.+++.|..-.+.| +.|.. -...||
T Consensus 90 ~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k--~~e~~~~ea~~~l 167 (385)
T 2q13_A 90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDV 167 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHH
Confidence 5566677666666677777888899999995 599999999999999999999998886654444 34432 222489
Q ss_pred HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccch-hhhhhHHHHHH
Q 008674 80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA 141 (557)
Q Consensus 80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL-EavEPHVk~va 141 (557)
.+++.+|+..+-=+++.|-.|...+-..+|..-...=.||+.||++|...+ +.++|.++.+.
T Consensus 168 ~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~ 230 (385)
T 2q13_A 168 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998889989988766666777777777778999999999988 58998876554
No 4
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.84 E-value=3.8e-05 Score=73.33 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
+|.++.+|......+-..|-.++..|=..+|+ ++..+-+.++.-+.||--|+++++.++ | ..+++|.
T Consensus 117 ~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~--------k----~~eeEle 184 (256)
T 1zww_A 117 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG--------K----IPDEELR 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT--------T----SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c----ccHHHHH
Confidence 58899999999999999999999999999886 999999999999999999999876542 1 1233888
Q ss_pred HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 139 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~ 139 (557)
.|.++|++-....+=.|..|.....-. +-+-.-=-.|||+||++++..|+.|.|-+..
T Consensus 185 ~A~~~fe~~~e~~~~~m~~l~~~e~e~-~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 185 QALEKFDESKEIAESSMFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVRLEE 242 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887766655555555444332221 2333445579999999999999999998764
No 5
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=97.81 E-value=2.4e-05 Score=74.17 Aligned_cols=125 Identities=17% Similarity=0.306 Sum_probs=103.0
Q ss_pred cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674 2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 80 (557)
Q Consensus 2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq 80 (557)
+|.+|.+|-.....|-..|-.++..|=..+| ++|..+-+-++.-+.+|--|+++++.++ | .. +.+|+
T Consensus 101 ~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~--------k---~~-eeEl~ 168 (240)
T 2z0v_A 101 VGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG--------K---IP-DEEVR 168 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTT--------S---SC-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c---cc-HHHHH
Confidence 5788999999999999999999999999999 7999999999999999999999864442 2 12 44999
Q ss_pred HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674 81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 139 (557)
Q Consensus 81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~ 139 (557)
.|.++|++-...++-.|..|..... ..|-+-..=-.|||.||++|...|+.|.|.+..
T Consensus 169 ~A~~~fe~~~e~~~~~m~~~~~~~~-e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~ 226 (240)
T 2z0v_A 169 QAVEKFEESKELAERSMFNFLENDV-EQVSQLAVFIEAALDYHRQSTEILQELQSKLQM 226 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888878877776643 233344555679999999999999999998753
No 6
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=97.07 E-value=0.0035 Score=57.71 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=98.7
Q ss_pred HHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHH---hhc-CCCCCCCCccchHHHHHHHHH
Q 008674 9 LQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR---EKG-KSKSGKGESVSLQQQLQAAND 84 (557)
Q Consensus 9 LqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~---eKG-rsk~~KgEs~s~q~QLq~a~~ 84 (557)
+..+.+.|-.+|..++..|-..|++.+..+..+-+.++.||-=|+..++.+. +|+ ++ .-...-...+++|+.|.+
T Consensus 102 ~~~~~~~~~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~-kd~~kl~~ae~el~~ak~ 180 (244)
T 1uru_A 102 SESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR-KDDVKLTKGREQLEEARR 180 (244)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT-TBCCTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHH
Confidence 5556667778888889999999999999999999999999999999876432 333 22 111222224558999999
Q ss_pred HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHhhh
Q 008674 85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQ 144 (557)
Q Consensus 85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE~Q 144 (557)
+|+.-..++.=-|-.|-+....-+...-.---.+|+.||+...+.++.+.+-++-+.+++
T Consensus 181 ~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~ 240 (244)
T 1uru_A 181 TYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATES 240 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999866666555555544444444444455567899999999999999999888877664
No 7
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=95.76 E-value=0.022 Score=53.20 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=85.3
Q ss_pred HHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCc--cchHHHHHHHHHHHHH
Q 008674 11 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEE 88 (557)
Q Consensus 11 KlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs--~s~q~QLq~a~~EY~E 88 (557)
.++..|...|-..+..|-..|++.+..|..+-+.++.||-=|+..++.+ +|-+.|..|.|. ...+++|+.|.++|++
T Consensus 119 ~~~~d~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l-~kl~~k~~kd~~kl~kae~el~~ak~~ye~ 197 (251)
T 2fic_A 119 LLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHY-ESLQTAKKKDEAKIAKAEEELIKAQKVFEE 197 (251)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhcCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677888999999999999999999999999999887654 222333333332 2345589999999996
Q ss_pred hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674 89 EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 138 (557)
Q Consensus 89 eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk 138 (557)
--.++.=.|-.|.+....-+-..-.--=.+|+.||+.+.+.++.|.+-+.
T Consensus 198 ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~ 247 (251)
T 2fic_A 198 MNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 247 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555544443322223333446899999999999998876553
No 8
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=91.41 E-value=1.1 Score=42.55 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=97.3
Q ss_pred HHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHHHHHHH
Q 008674 8 ELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDE 85 (557)
Q Consensus 8 ELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s--~q~QLq~a~~E 85 (557)
.++.|...|+..|-..|..|-..+++-+..+..+-...+.|.-=|+.+++.+. |-+.|..|.|.-. .+.+|+.|..+
T Consensus 97 ~~~~l~~~~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~-kl~~k~~kd~~kl~kae~el~~a~~~ 175 (237)
T 4avm_A 97 NNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE-AVQNAKKKDEAKTAKAEEEFNKAQTV 175 (237)
T ss_dssp HHHHHHHHHHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 34567788998888889999999999999999999999999999999886543 2333334655432 33478888899
Q ss_pred HHHhHhhhhhhhccccccchhhHHHHHHHHH-HHHHHhHHhhccchhhhhhHHHHHHhhhcc
Q 008674 86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHH-AAQLNFFRKGFKSLEAVDTHVRLVAERQHI 146 (557)
Q Consensus 86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHH-AAQL~fFrkgLKsLEavEPHVk~vaE~QHI 146 (557)
|+.--..+.=-|-.|-+.. ..+|...-.-. .+|.+||..--|....+...+.-+.+ ||-
T Consensus 176 ye~lN~~L~~eLP~l~~~~-~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~-~~~ 235 (237)
T 4avm_A 176 FEDLNQELLEELPILYNSR-IGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLER-QHS 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hcC
Confidence 9877776665555554443 34555444444 45999999999999988876666554 443
No 9
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=61.74 E-value=29 Score=33.23 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=82.2
Q ss_pred HHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHHHHHHHHHHh
Q 008674 12 LVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDEYEEE 89 (557)
Q Consensus 12 lvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s--~q~QLq~a~~EY~Ee 89 (557)
++..|...+......|-..|++-+..+..+=+..+-|.-=|+.+++.++ |=+.|..|.|.-. .+.+|+.|..+|+.-
T Consensus 106 l~~d~~~~l~d~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~~-kL~~K~~kd~~kl~kae~el~~Ak~~Ye~l 184 (243)
T 4a3a_A 106 LWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLE-ALQSSKRKDESRISKAEEEFQKAQKVFEEF 184 (243)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555567777777777777777777777778888876542 2223333666422 344899999999887
Q ss_pred HhhhhhhhccccccchhhHHHHHHHH-HHHHHHhHHhhccchhhhhhHHHHHHhhhccc
Q 008674 90 ARLCVFRLKSLKQGQYRSLLTQAARH-HAAQLNFFRKGFKSLEAVDTHVRLVAERQHID 147 (557)
Q Consensus 90 AtLfvFRLKSLKQGQ~RSLLTQAARH-HAAQL~fFrkgLKsLEavEPHVk~vaE~QHID 147 (557)
-..+.=-|-.|=+-. ..+|...-.- =.+|..||....|..-.+..-+.-.+ .||-|
T Consensus 185 N~~L~eELP~l~~~r-~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~-~~~~~ 241 (243)
T 4a3a_A 185 NVDLQEELPSLWSRR-VGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLG-DQHAD 241 (243)
T ss_dssp HHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTC-
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhccC
Confidence 776655554444332 2333333222 34699999999888888877665444 45543
No 10
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=39.98 E-value=33 Score=30.27 Aligned_cols=53 Identities=30% Similarity=0.328 Sum_probs=38.4
Q ss_pred hhH---HHHHHHhhhhccceee----ccCCcH----------------HHHHHhhhH-------HHHHHHhhhHHHHHHH
Q 008674 5 VQF---ELQKLVDNYRSNIFLT----ITNPSE----------------SLLNELRTV-------EDMKRQCDEKRNVCEY 54 (557)
Q Consensus 5 vQf---ELqKlvD~YRshI~~T----IT~PSE----------------SLLnELrtV-------EEMKrQCDeKR~vYE~ 54 (557)
+.| ||.||..+-=.+++.- +.+|+. -||||+|-. .-|+.|.++||+..+.
T Consensus 15 ~~~k~~ELkkLn~SlL~nfLeLl~~l~~~P~~~~~kv~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~ 94 (108)
T 1ykh_A 15 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 7888887766665442 344543 588998853 5689999999999998
Q ss_pred HHH
Q 008674 55 VMA 57 (557)
Q Consensus 55 M~a 57 (557)
|+.
T Consensus 95 i~~ 97 (108)
T 1ykh_A 95 IEQ 97 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 11
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.97 E-value=2e+02 Score=28.40 Aligned_cols=98 Identities=26% Similarity=0.357 Sum_probs=52.5
Q ss_pred chhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHH-HHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674 3 GEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKR-NVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 81 (557)
Q Consensus 3 GKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR-~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~ 81 (557)
|..|-.+-.-.|.||.| ||.+|..|+==+.--..| .+-.- ++..+.|+ .-+.| -..++|+|..
T Consensus 79 ge~e~~~a~~~d~yR~~------------LK~IR~~E~svqp~R~~R~~l~~~-I~kLk~k~-P~s~k--l~~LeqELvr 142 (234)
T 3plt_A 79 GELQDQFIDKYDQYRVT------------LKSIRNIEASVQPSRDRKEKITDE-IAHLKYKD-PQSTK--IPVLEQELVR 142 (234)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC-TTCTH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHHH-HHHHhccC-CCCch--HHHHHHHHHH
Confidence 44555555555666654 899999887544443333 34433 34455553 22323 3456667766
Q ss_pred HHHH-HHHhHhhhhhhhccccccchhhHHHHHHHHHHH
Q 008674 82 ANDE-YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA 118 (557)
Q Consensus 82 a~~E-Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAA 118 (557)
|..| --+||.|.-|.=..||.+ -.+--.|-+.||=
T Consensus 143 aEae~lvaEAqL~n~kR~~lKEa--~~~~f~Al~E~aE 178 (234)
T 3plt_A 143 AEAESLVAEAQLSNITREKLKAA--YSYMFDSLRELSE 178 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHH
Confidence 5443 567787776655555543 2222334444444
Done!