Query 008675
Match_columns 557
No_of_seqs 266 out of 1799
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 15:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 1.8E-86 3.8E-91 706.7 46.1 538 15-554 28-584 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 2.5E-86 5.5E-91 676.1 33.5 507 16-556 41-622 (623)
3 PRK02106 choline dehydrogenase 100.0 2.9E-74 6.4E-79 619.4 39.5 487 29-550 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 1.6E-73 3.5E-78 610.6 38.2 481 34-549 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 2.3E-67 5.1E-72 557.4 34.1 482 28-549 3-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 2.7E-51 5.9E-56 427.7 35.8 464 33-549 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 5.2E-43 1.1E-47 348.9 13.9 257 33-299 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 8.6E-34 1.9E-38 251.0 11.1 139 395-542 1-144 (144)
9 PRK08274 tricarballylate dehyd 99.5 8.7E-13 1.9E-17 139.9 15.4 64 203-276 137-200 (466)
10 PRK12845 3-ketosteroid-delta-1 99.4 2.1E-12 4.5E-17 138.6 15.6 60 205-274 225-284 (564)
11 PRK06481 fumarate reductase fl 99.4 2.9E-12 6.2E-17 136.6 16.4 62 203-274 196-257 (506)
12 PRK12835 3-ketosteroid-delta-1 99.4 2.5E-12 5.4E-17 138.9 15.1 60 206-274 222-281 (584)
13 PRK12844 3-ketosteroid-delta-1 99.4 2.6E-12 5.7E-17 138.2 15.1 60 205-274 216-275 (557)
14 PRK07121 hypothetical protein; 99.4 2.8E-12 6E-17 136.7 14.4 64 203-275 183-246 (492)
15 PF00890 FAD_binding_2: FAD bi 99.4 3.4E-12 7.3E-17 133.6 13.9 60 205-275 149-209 (417)
16 COG2081 Predicted flavoprotein 99.4 5.9E-12 1.3E-16 123.6 13.4 169 30-272 1-171 (408)
17 PRK12837 3-ketosteroid-delta-1 99.4 7.1E-12 1.5E-16 133.9 15.2 58 207-274 184-241 (513)
18 PRK06175 L-aspartate oxidase; 99.4 9.8E-12 2.1E-16 129.8 15.5 56 203-269 134-190 (433)
19 PRK12834 putative FAD-binding 99.4 1.8E-11 4E-16 131.9 17.3 35 30-64 2-37 (549)
20 TIGR01813 flavo_cyto_c flavocy 99.3 1.2E-11 2.6E-16 130.2 13.2 62 203-273 136-197 (439)
21 PF03486 HI0933_like: HI0933-l 99.3 2.9E-12 6.3E-17 131.3 8.2 167 33-272 1-170 (409)
22 PRK06263 sdhA succinate dehydr 99.3 1.8E-11 4E-16 131.7 14.5 58 203-269 140-198 (543)
23 PRK07843 3-ketosteroid-delta-1 99.3 6.8E-11 1.5E-15 127.4 16.3 62 205-276 216-277 (557)
24 PRK12839 hypothetical protein; 99.3 7E-11 1.5E-15 127.3 15.6 63 203-274 220-282 (572)
25 PTZ00139 Succinate dehydrogena 99.3 8.2E-11 1.8E-15 127.9 15.9 58 203-269 172-230 (617)
26 PLN00128 Succinate dehydrogena 99.3 5E-11 1.1E-15 129.6 13.7 59 203-270 193-252 (635)
27 PRK08958 sdhA succinate dehydr 99.2 5.9E-11 1.3E-15 128.4 13.9 58 203-269 149-207 (588)
28 PRK06452 sdhA succinate dehydr 99.2 6.5E-11 1.4E-15 127.7 14.0 56 203-268 142-198 (566)
29 PRK06134 putative FAD-binding 99.2 1.6E-10 3.5E-15 125.2 16.7 61 204-274 224-284 (581)
30 PRK07573 sdhA succinate dehydr 99.2 8.1E-11 1.8E-15 128.3 14.3 54 206-269 179-233 (640)
31 PRK11101 glpA sn-glycerol-3-ph 99.2 1.2E-10 2.6E-15 125.2 15.4 62 205-277 157-219 (546)
32 PRK12842 putative succinate de 99.2 2.6E-10 5.7E-15 123.6 17.9 61 205-275 222-282 (574)
33 PLN02815 L-aspartate oxidase 99.2 5.2E-11 1.1E-15 128.2 12.3 56 208-269 167-223 (594)
34 PRK09077 L-aspartate oxidase; 99.2 1.8E-10 3.9E-15 123.7 16.2 57 208-269 150-208 (536)
35 PTZ00306 NADH-dependent fumara 99.2 2.2E-10 4.8E-15 133.0 18.1 58 209-271 559-623 (1167)
36 PRK07395 L-aspartate oxidase; 99.2 5.5E-11 1.2E-15 127.5 12.0 52 208-269 146-198 (553)
37 PRK09078 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 126.7 14.1 58 203-269 155-213 (598)
38 PRK05945 sdhA succinate dehydr 99.2 9.7E-11 2.1E-15 126.8 13.6 57 203-269 141-198 (575)
39 PRK12843 putative FAD-binding 99.2 3.3E-10 7.1E-15 122.7 17.4 62 203-274 227-288 (578)
40 PRK08641 sdhA succinate dehydr 99.2 1.4E-10 3.1E-15 125.5 14.4 51 210-269 150-201 (589)
41 PRK08071 L-aspartate oxidase; 99.2 1.9E-10 4.1E-15 122.7 15.1 50 210-269 142-191 (510)
42 PRK07804 L-aspartate oxidase; 99.2 1.6E-10 3.4E-15 124.2 14.2 39 28-66 12-51 (541)
43 PRK07057 sdhA succinate dehydr 99.2 2.3E-10 5E-15 124.0 14.3 58 203-269 154-212 (591)
44 PRK09231 fumarate reductase fl 99.2 4.7E-10 1E-14 121.4 16.1 52 208-269 145-197 (582)
45 PRK08626 fumarate reductase fl 99.2 1.6E-10 3.4E-15 126.3 12.3 55 205-269 166-221 (657)
46 TIGR00551 nadB L-aspartate oxi 99.2 4.8E-10 1E-14 119.3 15.5 56 203-269 134-190 (488)
47 TIGR01176 fum_red_Fp fumarate 99.1 7E-10 1.5E-14 119.8 15.8 52 208-269 144-196 (580)
48 PRK07803 sdhA succinate dehydr 99.1 3.3E-10 7.2E-15 123.5 13.2 49 212-270 166-215 (626)
49 TIGR01812 sdhA_frdA_Gneg succi 99.1 4.9E-10 1.1E-14 121.6 13.9 57 203-269 135-192 (566)
50 COG0579 Predicted dehydrogenas 99.1 1.2E-09 2.6E-14 111.0 15.2 61 203-277 159-219 (429)
51 PRK06069 sdhA succinate dehydr 99.1 5.1E-10 1.1E-14 121.4 12.9 52 208-269 149-201 (577)
52 PRK08205 sdhA succinate dehydr 99.1 5.1E-10 1.1E-14 121.3 12.8 58 203-269 146-207 (583)
53 PF01266 DAO: FAD dependent ox 99.1 7.5E-11 1.6E-15 120.5 5.3 58 204-277 154-211 (358)
54 PLN02464 glycerol-3-phosphate 99.1 8E-10 1.7E-14 120.3 12.6 65 203-277 238-304 (627)
55 PRK08275 putative oxidoreducta 99.1 1.3E-09 2.9E-14 117.6 13.4 57 203-268 143-200 (554)
56 PF01946 Thi4: Thi4 family; PD 99.1 2.2E-10 4.8E-15 103.7 6.0 36 30-65 15-51 (230)
57 PRK07512 L-aspartate oxidase; 99.1 1.8E-09 3.9E-14 115.2 13.8 56 203-269 142-198 (513)
58 TIGR01811 sdhA_Bsu succinate d 99.0 1E-09 2.3E-14 119.0 12.0 52 209-269 145-197 (603)
59 PRK04176 ribulose-1,5-biphosph 99.0 8.5E-10 1.8E-14 106.6 10.1 37 29-65 22-59 (257)
60 PTZ00383 malate:quinone oxidor 99.0 4.6E-09 1E-13 110.6 14.9 38 28-65 41-81 (497)
61 PRK06854 adenylylsulfate reduc 99.0 4.2E-09 9.1E-14 114.5 15.1 54 205-268 140-195 (608)
62 PRK12266 glpD glycerol-3-phosp 99.0 2.5E-09 5.4E-14 114.2 12.9 39 28-66 2-41 (508)
63 COG1635 THI4 Ribulose 1,5-bisp 99.0 2.4E-09 5.1E-14 96.3 10.2 34 31-64 29-63 (262)
64 TIGR00292 thiazole biosynthesi 99.0 2.1E-09 4.5E-14 103.5 10.4 36 30-65 19-55 (254)
65 TIGR02061 aprA adenosine phosp 99.0 3.1E-09 6.8E-14 114.6 12.7 52 208-268 137-191 (614)
66 TIGR01373 soxB sarcosine oxida 99.0 1.5E-08 3.3E-13 105.7 16.8 46 20-65 18-66 (407)
67 TIGR01320 mal_quin_oxido malat 99.0 2.3E-08 4.9E-13 105.7 18.1 64 203-277 184-248 (483)
68 PRK12409 D-amino acid dehydrog 99.0 6E-09 1.3E-13 108.8 13.0 33 33-65 2-35 (410)
69 PRK13800 putative oxidoreducta 98.9 6.9E-09 1.5E-13 118.0 14.0 51 209-269 155-206 (897)
70 COG1053 SdhA Succinate dehydro 98.9 4.1E-09 8.8E-14 112.1 10.7 78 209-300 151-241 (562)
71 PRK13369 glycerol-3-phosphate 98.9 1E-08 2.3E-13 109.5 13.8 39 28-66 2-41 (502)
72 PLN02661 Putative thiazole syn 98.9 7.4E-09 1.6E-13 102.5 11.6 36 30-65 90-127 (357)
73 COG0578 GlpA Glycerol-3-phosph 98.9 2E-08 4.4E-13 104.2 14.8 60 206-277 173-233 (532)
74 PRK11259 solA N-methyltryptoph 98.9 1.6E-08 3.5E-13 104.3 13.7 35 31-65 2-37 (376)
75 TIGR02485 CobZ_N-term precorri 98.9 7.3E-09 1.6E-13 108.7 11.3 60 203-274 129-189 (432)
76 PTZ00363 rab-GDP dissociation 98.9 2.7E-08 5.9E-13 103.3 14.9 44 29-72 1-45 (443)
77 COG0029 NadB Aspartate oxidase 98.9 2.6E-08 5.6E-13 100.5 13.5 57 203-268 139-196 (518)
78 PRK05257 malate:quinone oxidor 98.9 4.1E-08 8.9E-13 103.9 15.3 36 30-65 3-41 (494)
79 KOG1298 Squalene monooxygenase 98.9 1.2E-08 2.6E-13 99.0 9.7 53 206-269 157-209 (509)
80 PRK08401 L-aspartate oxidase; 98.8 2E-08 4.4E-13 106.2 12.3 32 33-64 2-34 (466)
81 TIGR01377 soxA_mon sarcosine o 98.8 3.7E-08 8E-13 101.8 13.7 33 33-65 1-34 (380)
82 PRK11728 hydroxyglutarate oxid 98.8 2.1E-08 4.6E-13 104.0 11.5 34 32-65 2-38 (393)
83 TIGR03329 Phn_aa_oxid putative 98.8 2.9E-08 6.3E-13 105.0 12.7 38 28-65 20-60 (460)
84 PRK10157 putative oxidoreducta 98.8 2.5E-08 5.4E-13 104.4 11.2 36 31-66 4-40 (428)
85 COG0644 FixC Dehydrogenases (f 98.8 2.3E-08 4.9E-13 103.7 10.5 37 31-67 2-39 (396)
86 PRK13339 malate:quinone oxidor 98.8 1E-07 2.3E-12 100.1 15.1 35 29-63 3-40 (497)
87 PRK00711 D-amino acid dehydrog 98.8 1.1E-07 2.4E-12 99.5 15.5 32 34-65 2-34 (416)
88 PF12831 FAD_oxidored: FAD dep 98.8 4.1E-09 8.9E-14 110.1 4.6 58 206-277 99-156 (428)
89 KOG2820 FAD-dependent oxidored 98.7 4.1E-08 8.9E-13 93.9 9.3 40 28-67 3-43 (399)
90 PRK05192 tRNA uridine 5-carbox 98.7 7.4E-08 1.6E-12 102.2 12.1 35 30-64 2-37 (618)
91 PRK10015 oxidoreductase; Provi 98.7 9.8E-08 2.1E-12 99.8 12.4 36 31-66 4-40 (429)
92 PRK13977 myosin-cross-reactive 98.7 4.6E-07 9.9E-12 95.4 15.7 63 203-269 232-294 (576)
93 TIGR03364 HpnW_proposed FAD de 98.7 9.1E-08 2E-12 98.3 10.1 33 33-65 1-34 (365)
94 COG1233 Phytoene dehydrogenase 98.7 2E-07 4.4E-12 99.0 12.7 38 31-68 2-40 (487)
95 COG3573 Predicted oxidoreducta 98.7 8.5E-07 1.8E-11 84.7 15.3 36 30-65 3-39 (552)
96 KOG2415 Electron transfer flav 98.6 9.9E-08 2.2E-12 93.5 8.7 66 203-277 188-267 (621)
97 PRK01747 mnmC bifunctional tRN 98.6 1.8E-07 3.8E-12 103.6 11.9 34 32-65 260-294 (662)
98 PRK06185 hypothetical protein; 98.6 4.5E-07 9.7E-12 94.6 12.1 37 29-65 3-40 (407)
99 TIGR02730 carot_isom carotene 98.6 6.7E-07 1.4E-11 95.6 13.7 71 190-274 222-292 (493)
100 PF06039 Mqo: Malate:quinone o 98.5 1.4E-06 3.1E-11 88.0 13.6 85 203-308 187-273 (488)
101 TIGR00275 flavoprotein, HI0933 98.5 7.4E-07 1.6E-11 92.4 12.1 31 36-66 1-32 (400)
102 PF13738 Pyr_redox_3: Pyridine 98.5 1.7E-07 3.7E-12 87.7 6.6 59 203-276 87-146 (203)
103 COG3380 Predicted NAD/FAD-depe 98.5 6.3E-07 1.4E-11 83.4 10.0 32 34-65 3-35 (331)
104 KOG2404 Fumarate reductase, fl 98.5 8.2E-07 1.8E-11 84.4 10.8 50 211-270 159-208 (477)
105 PLN02172 flavin-containing mon 98.5 9.2E-07 2E-11 92.9 12.5 40 28-67 6-46 (461)
106 KOG0042 Glycerol-3-phosphate d 98.5 9.9E-08 2.1E-12 96.5 4.7 72 193-274 217-292 (680)
107 PF01134 GIDA: Glucose inhibit 98.5 4.1E-07 8.9E-12 91.6 8.2 49 207-270 106-154 (392)
108 PRK06467 dihydrolipoamide dehy 98.4 9.9E-07 2.1E-11 93.6 10.9 36 29-64 1-37 (471)
109 COG0665 DadA Glycine/D-amino a 98.4 3.7E-06 8.1E-11 87.0 14.9 37 30-66 2-39 (387)
110 PLN02985 squalene monooxygenas 98.4 3.4E-06 7.5E-11 90.0 14.2 38 27-64 38-76 (514)
111 PRK07364 2-octaprenyl-6-methox 98.4 3.4E-06 7.3E-11 88.3 14.0 39 28-66 14-53 (415)
112 PRK08773 2-octaprenyl-3-methyl 98.4 2.3E-06 4.9E-11 88.9 11.9 37 29-65 3-40 (392)
113 TIGR02734 crtI_fam phytoene de 98.4 7.7E-07 1.7E-11 95.5 8.6 58 203-274 225-282 (502)
114 COG2072 TrkA Predicted flavopr 98.3 6.4E-06 1.4E-10 86.2 13.6 40 28-67 4-45 (443)
115 PRK07208 hypothetical protein; 98.3 7.6E-06 1.6E-10 87.3 14.3 40 29-68 1-41 (479)
116 COG2509 Uncharacterized FAD-de 98.3 1E-05 2.2E-10 81.2 13.4 215 28-282 14-244 (486)
117 PRK06126 hypothetical protein; 98.3 1.7E-05 3.7E-10 86.0 16.5 36 30-65 5-41 (545)
118 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.3E-05 2.9E-10 86.6 15.6 37 30-66 8-45 (538)
119 PRK06834 hypothetical protein; 98.3 9.4E-06 2E-10 86.3 13.4 35 31-65 2-37 (488)
120 PLN02697 lycopene epsilon cycl 98.3 5.5E-06 1.2E-10 88.1 11.3 34 30-63 106-140 (529)
121 PRK05714 2-octaprenyl-3-methyl 98.3 1.4E-05 3.1E-10 83.3 14.3 33 32-64 2-35 (405)
122 PRK08244 hypothetical protein; 98.3 1.4E-05 3.1E-10 85.4 14.5 35 32-66 2-37 (493)
123 PRK06847 hypothetical protein; 98.2 1.8E-05 3.8E-10 81.7 14.4 37 29-65 1-38 (375)
124 PRK06184 hypothetical protein; 98.2 1.1E-05 2.4E-10 86.5 13.0 36 31-66 2-38 (502)
125 TIGR00136 gidA glucose-inhibit 98.2 6.4E-06 1.4E-10 87.6 9.4 32 33-64 1-33 (617)
126 PRK07333 2-octaprenyl-6-methox 98.2 2.4E-05 5.2E-10 81.5 13.6 34 32-65 1-37 (403)
127 PLN00093 geranylgeranyl diphos 98.2 1.8E-06 3.8E-11 90.7 5.0 40 25-64 32-72 (450)
128 PRK07190 hypothetical protein; 98.1 1.4E-05 2.9E-10 85.0 11.0 36 31-66 4-40 (487)
129 KOG4254 Phytoene desaturase [C 98.1 1.7E-05 3.6E-10 79.1 10.3 54 203-270 270-323 (561)
130 COG0654 UbiH 2-polyprenyl-6-me 98.1 1.6E-05 3.5E-10 82.2 10.7 32 32-63 2-34 (387)
131 PRK05675 sdhA succinate dehydr 98.1 4.5E-05 9.7E-10 82.7 14.3 58 203-269 132-190 (570)
132 PRK11445 putative oxidoreducta 98.1 4.7E-05 1E-09 77.6 13.6 33 33-65 2-34 (351)
133 PRK08132 FAD-dependent oxidore 98.1 7.9E-05 1.7E-09 80.8 15.4 37 29-65 20-57 (547)
134 PF13450 NAD_binding_8: NAD(P) 98.1 3.2E-06 6.9E-11 63.5 3.1 31 37-67 1-32 (68)
135 PRK07236 hypothetical protein; 98.0 8.5E-05 1.8E-09 76.9 14.3 36 30-65 4-40 (386)
136 PRK07588 hypothetical protein; 98.0 2.1E-05 4.6E-10 81.6 8.9 32 34-65 2-34 (391)
137 COG0562 Glf UDP-galactopyranos 98.0 7.2E-06 1.6E-10 78.4 4.4 38 32-69 1-39 (374)
138 PF00743 FMO-like: Flavin-bind 98.0 2E-05 4.4E-10 84.1 8.4 34 34-67 3-37 (531)
139 COG0445 GidA Flavin-dependent 97.9 2E-05 4.4E-10 80.8 7.5 52 207-272 111-162 (621)
140 PRK15317 alkyl hydroperoxide r 97.9 7.2E-05 1.6E-09 80.4 12.2 33 30-62 209-242 (517)
141 PRK06753 hypothetical protein; 97.9 0.00011 2.3E-09 75.8 13.0 33 34-66 2-35 (373)
142 TIGR02023 BchP-ChlP geranylger 97.9 5.9E-06 1.3E-10 85.6 3.5 31 33-63 1-32 (388)
143 KOG2844 Dimethylglycine dehydr 97.9 5.6E-05 1.2E-09 78.9 10.4 73 189-277 176-251 (856)
144 KOG2665 Predicted FAD-dependen 97.9 4.1E-05 8.9E-10 72.9 8.4 40 27-66 43-85 (453)
145 TIGR02032 GG-red-SF geranylger 97.9 8.9E-06 1.9E-10 80.7 4.0 34 33-66 1-35 (295)
146 PRK06370 mercuric reductase; V 97.9 1.1E-05 2.4E-10 85.6 4.7 38 29-66 2-40 (463)
147 PRK06116 glutathione reductase 97.9 9.9E-06 2.2E-10 85.6 4.1 35 30-64 2-37 (450)
148 TIGR01816 sdhA_forward succina 97.8 0.00022 4.7E-09 77.4 14.0 57 203-269 125-182 (565)
149 PRK08010 pyridine nucleotide-d 97.8 1.2E-05 2.6E-10 84.8 4.1 34 31-64 2-36 (441)
150 PRK05868 hypothetical protein; 97.8 0.00017 3.8E-09 74.1 12.3 32 34-65 3-35 (372)
151 TIGR01372 soxA sarcosine oxida 97.8 0.00017 3.6E-09 83.3 13.1 64 203-277 357-420 (985)
152 PRK08013 oxidoreductase; Provi 97.8 1.5E-05 3.4E-10 82.8 4.3 36 31-66 2-38 (400)
153 PLN02463 lycopene beta cyclase 97.8 1.7E-05 3.8E-10 82.9 4.6 37 28-64 24-61 (447)
154 PRK05976 dihydrolipoamide dehy 97.8 1.4E-05 3.1E-10 84.9 4.1 37 29-65 1-38 (472)
155 PF01494 FAD_binding_3: FAD bi 97.8 1.3E-05 2.9E-10 81.6 3.6 35 32-66 1-36 (356)
156 PRK09126 hypothetical protein; 97.8 1.5E-05 3.2E-10 82.8 3.9 35 32-66 3-38 (392)
157 PRK07251 pyridine nucleotide-d 97.8 1.6E-05 3.5E-10 83.7 4.2 34 31-64 2-36 (438)
158 PRK07494 2-octaprenyl-6-methox 97.8 1.9E-05 4.1E-10 81.8 4.5 37 29-65 4-41 (388)
159 TIGR01421 gluta_reduc_1 glutat 97.8 1.4E-05 3E-10 84.3 3.5 35 31-65 1-36 (450)
160 TIGR02028 ChlP geranylgeranyl 97.8 1.5E-05 3.3E-10 82.6 3.3 32 33-64 1-33 (398)
161 PRK08020 ubiF 2-octaprenyl-3-m 97.8 2E-05 4.3E-10 81.8 4.0 36 30-65 3-39 (391)
162 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00024 5.3E-09 76.4 12.4 64 203-277 134-198 (516)
163 PF13434 K_oxygenase: L-lysine 97.8 0.00016 3.4E-09 73.0 10.3 62 202-272 99-161 (341)
164 PTZ00058 glutathione reductase 97.8 2.2E-05 4.8E-10 84.4 4.3 36 30-65 46-82 (561)
165 KOG2853 Possible oxidoreductas 97.8 0.00019 4.1E-09 69.2 10.0 36 32-67 86-126 (509)
166 PRK07608 ubiquinone biosynthes 97.7 2.2E-05 4.8E-10 81.3 4.2 35 32-66 5-40 (388)
167 PRK07818 dihydrolipoamide dehy 97.7 2.1E-05 4.6E-10 83.5 4.1 36 30-65 2-38 (466)
168 PRK05249 soluble pyridine nucl 97.7 2.3E-05 5E-10 83.1 4.4 37 30-66 3-40 (461)
169 PRK06115 dihydrolipoamide dehy 97.7 2.3E-05 5E-10 83.1 4.1 32 31-62 2-34 (466)
170 KOG1399 Flavin-containing mono 97.7 0.00015 3.4E-09 75.1 9.9 37 31-67 5-42 (448)
171 PRK08849 2-octaprenyl-3-methyl 97.7 2.4E-05 5.2E-10 80.9 3.8 34 31-64 2-36 (384)
172 PRK08850 2-octaprenyl-6-methox 97.7 2.3E-05 5.1E-10 81.7 3.8 35 29-63 1-36 (405)
173 PF04820 Trp_halogenase: Trypt 97.7 4.1E-05 8.9E-10 80.5 5.6 34 34-67 1-38 (454)
174 TIGR01424 gluta_reduc_2 glutat 97.7 2.3E-05 4.9E-10 82.8 3.6 33 32-64 2-35 (446)
175 TIGR00031 UDP-GALP_mutase UDP- 97.7 2.9E-05 6.2E-10 79.0 4.1 35 33-67 2-37 (377)
176 PRK07045 putative monooxygenas 97.7 3.1E-05 6.7E-10 80.3 3.9 37 30-66 3-40 (388)
177 PRK06292 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 82.1 4.0 34 31-64 2-36 (460)
178 PRK06416 dihydrolipoamide dehy 97.6 3.3E-05 7.2E-10 82.0 3.8 34 31-64 3-37 (462)
179 TIGR03143 AhpF_homolog putativ 97.6 3.8E-05 8.2E-10 83.2 4.0 36 30-65 2-38 (555)
180 KOG0029 Amine oxidase [Seconda 97.6 4.7E-05 1E-09 80.3 4.6 41 28-68 11-52 (501)
181 PF05834 Lycopene_cycl: Lycope 97.6 3.8E-05 8.3E-10 78.9 3.8 33 34-66 1-36 (374)
182 PRK14694 putative mercuric red 97.6 4.3E-05 9.4E-10 81.1 4.3 37 29-65 3-40 (468)
183 COG0492 TrxB Thioredoxin reduc 97.6 3.9E-05 8.5E-10 75.7 3.6 35 31-65 2-38 (305)
184 COG1249 Lpd Pyruvate/2-oxoglut 97.6 4.3E-05 9.2E-10 79.5 3.9 36 29-64 1-37 (454)
185 PRK06327 dihydrolipoamide dehy 97.6 4E-05 8.7E-10 81.5 3.8 33 30-62 2-35 (475)
186 PTZ00153 lipoamide dehydrogena 97.6 5.1E-05 1.1E-09 82.9 4.3 32 32-63 116-148 (659)
187 TIGR01350 lipoamide_DH dihydro 97.6 5.2E-05 1.1E-09 80.5 4.3 32 32-63 1-33 (461)
188 TIGR01988 Ubi-OHases Ubiquinon 97.6 4.8E-05 1E-09 78.6 3.9 33 34-66 1-34 (385)
189 PTZ00367 squalene epoxidase; P 97.6 5.3E-05 1.2E-09 81.5 4.2 35 30-64 31-66 (567)
190 TIGR02053 MerA mercuric reduct 97.6 4.8E-05 1E-09 80.7 3.7 33 33-65 1-34 (463)
191 KOG2960 Protein involved in th 97.6 6.1E-05 1.3E-09 67.6 3.7 35 32-66 76-113 (328)
192 TIGR01790 carotene-cycl lycope 97.6 4.8E-05 1E-09 78.8 3.6 32 34-65 1-33 (388)
193 PLN02507 glutathione reductase 97.6 5E-05 1.1E-09 81.1 3.6 33 30-62 23-56 (499)
194 TIGR01292 TRX_reduct thioredox 97.6 5.4E-05 1.2E-09 75.3 3.6 32 33-64 1-33 (300)
195 PF06100 Strep_67kDa_ant: Stre 97.5 0.0034 7.5E-08 64.7 16.3 59 206-268 216-274 (500)
196 PTZ00052 thioredoxin reductase 97.5 6.2E-05 1.4E-09 80.4 3.9 33 31-63 4-37 (499)
197 TIGR01984 UbiH 2-polyprenyl-6- 97.5 6.9E-05 1.5E-09 77.5 3.9 33 34-66 1-35 (382)
198 PRK13748 putative mercuric red 97.5 7.2E-05 1.6E-09 81.5 4.1 34 31-64 97-131 (561)
199 PRK09897 hypothetical protein; 97.5 0.00078 1.7E-08 71.9 11.6 34 33-66 2-38 (534)
200 KOG2311 NAD/FAD-utilizing prot 97.5 0.00017 3.6E-09 72.6 6.1 55 208-272 136-190 (679)
201 PRK06617 2-octaprenyl-6-methox 97.5 7.1E-05 1.5E-09 77.1 3.6 32 33-64 2-34 (374)
202 PRK05732 2-octaprenyl-6-methox 97.5 8E-05 1.7E-09 77.3 3.9 33 31-63 2-38 (395)
203 PLN02546 glutathione reductase 97.5 9.5E-05 2.1E-09 79.6 4.5 33 30-62 77-110 (558)
204 TIGR02733 desat_CrtD C-3',4' d 97.5 8.7E-05 1.9E-09 79.5 4.2 36 33-68 2-38 (492)
205 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 9E-05 2E-09 76.7 3.7 34 32-65 2-36 (390)
206 PRK08163 salicylate hydroxylas 97.4 0.00011 2.3E-09 76.5 4.1 36 30-65 2-38 (396)
207 PRK08243 4-hydroxybenzoate 3-m 97.4 9.5E-05 2.1E-09 76.7 3.6 34 32-65 2-36 (392)
208 PLN02268 probable polyamine ox 97.4 0.00013 2.7E-09 76.9 4.1 36 33-68 1-37 (435)
209 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00011 2.4E-09 77.3 3.6 32 33-64 1-37 (437)
210 PRK06996 hypothetical protein; 97.4 0.00014 3.1E-09 75.5 4.2 36 30-65 9-49 (398)
211 TIGR01423 trypano_reduc trypan 97.4 0.00014 2.9E-09 77.3 3.9 33 31-63 2-36 (486)
212 PRK11883 protoporphyrinogen ox 97.3 0.00015 3.3E-09 76.7 3.8 35 34-68 2-39 (451)
213 PRK05329 anaerobic glycerol-3- 97.3 0.00016 3.5E-09 74.8 3.6 33 32-64 2-35 (422)
214 PRK10262 thioredoxin reductase 97.3 0.00019 4.2E-09 72.2 4.2 36 29-64 3-39 (321)
215 TIGR01789 lycopene_cycl lycope 97.3 0.00017 3.8E-09 73.8 3.6 32 34-65 1-35 (370)
216 PRK07233 hypothetical protein; 97.3 0.0002 4.2E-09 75.4 4.1 35 34-68 1-36 (434)
217 PLN02568 polyamine oxidase 97.3 0.00024 5.1E-09 76.3 4.5 40 29-68 2-47 (539)
218 COG1231 Monoamine oxidase [Ami 97.3 0.00027 5.9E-09 71.5 4.5 39 30-68 5-44 (450)
219 PLN02576 protoporphyrinogen ox 97.3 0.00027 5.8E-09 75.8 4.8 39 30-68 10-50 (496)
220 KOG2852 Possible oxidoreductas 97.2 0.00082 1.8E-08 63.6 7.0 38 29-66 7-51 (380)
221 PRK14727 putative mercuric red 97.2 0.0003 6.5E-09 74.9 4.5 34 31-64 15-49 (479)
222 TIGR03862 flavo_PP4765 unchara 97.2 0.0043 9.2E-08 63.1 12.5 88 159-272 57-145 (376)
223 TIGR01438 TGR thioredoxin and 97.2 0.00023 5.1E-09 75.6 3.5 32 32-63 2-34 (484)
224 PF07992 Pyr_redox_2: Pyridine 97.2 0.00025 5.5E-09 65.9 3.2 31 34-64 1-32 (201)
225 PRK07538 hypothetical protein; 97.2 0.00026 5.6E-09 74.0 3.5 32 34-65 2-34 (413)
226 PRK08294 phenol 2-monooxygenas 97.2 0.00038 8.3E-09 76.4 4.8 37 29-65 29-67 (634)
227 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00032 6.9E-09 71.7 3.6 34 33-66 3-37 (436)
228 PLN02676 polyamine oxidase 97.1 0.00038 8.3E-09 74.0 4.2 39 30-68 24-64 (487)
229 PRK13512 coenzyme A disulfide 97.1 0.0034 7.5E-08 66.1 11.2 32 34-65 3-37 (438)
230 TIGR03452 mycothione_red mycot 97.1 0.00046 1E-08 72.9 4.4 33 32-65 2-34 (452)
231 COG3349 Uncharacterized conser 97.1 0.00042 9.1E-09 71.4 3.7 34 35-68 3-37 (485)
232 TIGR00562 proto_IX_ox protopor 97.0 0.00049 1.1E-08 73.1 4.1 36 33-68 3-43 (462)
233 PLN02927 antheraxanthin epoxid 97.0 0.00054 1.2E-08 74.5 4.4 36 29-64 78-114 (668)
234 PLN02612 phytoene desaturase 97.0 0.001 2.2E-08 72.2 6.3 38 30-67 91-129 (567)
235 TIGR03140 AhpF alkyl hydropero 97.0 0.0005 1.1E-08 73.9 3.8 33 30-62 210-243 (515)
236 COG3075 GlpB Anaerobic glycero 97.0 0.00052 1.1E-08 66.1 3.4 34 32-65 2-36 (421)
237 TIGR03378 glycerol3P_GlpB glyc 97.0 0.00054 1.2E-08 70.2 3.4 62 204-277 270-331 (419)
238 TIGR03315 Se_ygfK putative sel 97.0 0.00074 1.6E-08 76.6 4.6 37 30-66 535-572 (1012)
239 PRK07846 mycothione reductase; 96.9 0.00081 1.8E-08 71.0 4.6 35 32-67 1-35 (451)
240 PRK12416 protoporphyrinogen ox 96.9 0.00067 1.4E-08 72.1 3.7 35 34-68 3-44 (463)
241 PRK12831 putative oxidoreducta 96.9 0.001 2.2E-08 70.5 4.9 38 29-66 137-175 (464)
242 TIGR02731 phytoene_desat phyto 96.9 0.00073 1.6E-08 71.6 3.9 35 34-68 1-36 (453)
243 TIGR02352 thiamin_ThiO glycine 96.9 0.0032 6.9E-08 63.7 8.3 54 203-272 143-196 (337)
244 KOG4716 Thioredoxin reductase 96.9 0.00091 2E-08 64.6 3.8 38 27-64 14-52 (503)
245 PF13454 NAD_binding_9: FAD-NA 96.9 0.025 5.4E-07 50.2 12.9 30 36-65 1-36 (156)
246 PF00996 GDI: GDP dissociation 96.8 0.00066 1.4E-08 70.1 2.7 43 29-71 1-44 (438)
247 PRK06912 acoL dihydrolipoamide 96.8 0.001 2.2E-08 70.5 4.2 33 34-66 2-35 (458)
248 PRK06475 salicylate hydroxylas 96.8 0.00091 2E-08 69.6 3.6 33 33-65 3-36 (400)
249 KOG1335 Dihydrolipoamide dehyd 96.8 0.0011 2.4E-08 65.1 3.9 34 31-64 38-72 (506)
250 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.001 2.2E-08 68.5 3.5 32 34-65 2-34 (433)
251 PRK04965 NADH:flavorubredoxin 96.7 0.026 5.7E-07 58.2 13.8 58 205-277 191-248 (377)
252 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.0065 1.4E-07 62.7 9.3 53 203-272 141-193 (381)
253 PF00070 Pyr_redox: Pyridine n 96.7 0.0019 4E-08 50.3 3.7 32 35-66 2-34 (80)
254 PLN02529 lysine-specific histo 96.7 0.0016 3.5E-08 71.8 4.5 39 30-68 158-197 (738)
255 KOG3855 Monooxygenase involved 96.7 0.0017 3.7E-08 64.6 4.1 36 30-65 34-74 (481)
256 TIGR01316 gltA glutamate synth 96.7 0.0018 3.9E-08 68.3 4.6 37 30-66 131-168 (449)
257 PRK12810 gltD glutamate syntha 96.7 0.0019 4.2E-08 68.6 4.8 37 30-66 141-178 (471)
258 KOG2614 Kynurenine 3-monooxyge 96.7 0.0016 3.4E-08 65.2 3.8 34 32-65 2-36 (420)
259 PLN02328 lysine-specific histo 96.7 0.0018 4E-08 71.8 4.7 39 30-68 236-275 (808)
260 KOG0405 Pyridine nucleotide-di 96.6 0.0022 4.7E-08 62.3 4.4 37 28-64 16-53 (478)
261 COG1232 HemY Protoporphyrinoge 96.6 0.0017 3.6E-08 67.2 3.7 34 35-68 3-39 (444)
262 COG1148 HdrA Heterodisulfide r 96.5 0.0021 4.5E-08 65.2 3.8 37 32-68 124-161 (622)
263 TIGR02732 zeta_caro_desat caro 96.5 0.0021 4.6E-08 68.3 4.0 64 204-273 226-289 (474)
264 PRK12779 putative bifunctional 96.5 0.0027 5.9E-08 72.6 5.0 37 31-67 305-342 (944)
265 TIGR03219 salicylate_mono sali 96.5 0.002 4.4E-08 67.3 3.7 32 34-65 2-35 (414)
266 PLN02487 zeta-carotene desatur 96.4 0.0038 8.2E-08 67.3 5.3 37 31-67 74-111 (569)
267 KOG0685 Flavin-containing amin 96.4 0.003 6.6E-08 64.2 4.0 40 29-68 18-59 (498)
268 PRK12775 putative trifunctiona 96.4 0.0026 5.6E-08 73.4 4.0 36 31-66 429-465 (1006)
269 PRK12769 putative oxidoreducta 96.4 0.003 6.4E-08 70.0 4.3 36 31-66 326-362 (654)
270 PRK09853 putative selenate red 96.4 0.0033 7.2E-08 71.2 4.5 38 30-67 537-575 (1019)
271 PRK11749 dihydropyrimidine deh 96.4 0.0033 7.1E-08 66.6 4.3 37 30-66 138-175 (457)
272 PRK12778 putative bifunctional 96.4 0.0034 7.4E-08 70.7 4.7 36 30-65 429-465 (752)
273 PRK07845 flavoprotein disulfid 96.3 0.0029 6.2E-08 67.2 3.7 32 34-65 3-35 (466)
274 PLN02852 ferredoxin-NADP+ redu 96.3 0.0048 1.1E-07 65.1 4.9 37 31-67 25-64 (491)
275 PRK12770 putative glutamate sy 96.2 0.0053 1.2E-07 62.6 4.8 36 31-66 17-53 (352)
276 TIGR01350 lipoamide_DH dihydro 96.1 0.031 6.8E-07 59.3 10.3 33 33-65 171-204 (461)
277 PLN03000 amine oxidase 96.1 0.0053 1.2E-07 68.3 4.2 38 31-68 183-221 (881)
278 PRK12814 putative NADPH-depend 96.1 0.0064 1.4E-07 67.2 4.7 36 31-66 192-228 (652)
279 PTZ00188 adrenodoxin reductase 96.0 0.01 2.2E-07 62.0 5.5 53 16-68 23-77 (506)
280 PLN02976 amine oxidase 95.9 0.0071 1.5E-07 70.0 4.4 37 31-67 692-729 (1713)
281 COG1252 Ndh NADH dehydrogenase 95.9 0.06 1.3E-06 55.1 10.6 35 33-67 4-41 (405)
282 PRK08255 salicylyl-CoA 5-hydro 95.9 0.0062 1.3E-07 68.6 3.5 32 34-65 2-36 (765)
283 PRK06567 putative bifunctional 95.9 0.0071 1.5E-07 67.9 3.9 35 30-64 381-416 (1028)
284 TIGR01318 gltD_gamma_fam gluta 95.8 0.0083 1.8E-07 63.6 4.3 36 31-66 140-176 (467)
285 PRK15317 alkyl hydroperoxide r 95.8 0.096 2.1E-06 56.4 12.3 56 210-275 400-456 (517)
286 PRK07818 dihydrolipoamide dehy 95.7 0.094 2E-06 55.7 11.8 32 34-65 174-206 (466)
287 TIGR01317 GOGAT_sm_gam glutama 95.7 0.011 2.3E-07 63.0 4.3 35 31-65 142-177 (485)
288 TIGR03140 AhpF alkyl hydropero 95.7 0.12 2.7E-06 55.6 12.4 55 210-274 401-456 (515)
289 TIGR03378 glycerol3P_GlpB glyc 95.6 0.037 8.1E-07 56.9 7.7 32 33-64 1-33 (419)
290 PRK05976 dihydrolipoamide dehy 95.6 0.13 2.8E-06 54.8 12.2 33 33-65 181-214 (472)
291 PRK12809 putative oxidoreducta 95.6 0.011 2.4E-07 65.2 4.2 37 31-67 309-346 (639)
292 TIGR02374 nitri_red_nirB nitri 95.4 0.068 1.5E-06 60.5 9.8 32 35-66 1-36 (785)
293 PRK06327 dihydrolipoamide dehy 95.4 0.13 2.9E-06 54.7 11.3 32 34-65 185-217 (475)
294 COG2907 Predicted NAD/FAD-bind 95.4 0.02 4.3E-07 56.0 4.4 40 31-70 7-46 (447)
295 COG1249 Lpd Pyruvate/2-oxoglut 95.3 0.16 3.4E-06 53.2 11.1 33 34-66 175-208 (454)
296 KOG1276 Protoporphyrinogen oxi 95.2 0.021 4.5E-07 57.4 4.1 37 31-67 10-49 (491)
297 KOG1439 RAB proteins geranylge 95.2 0.016 3.4E-07 57.8 3.2 43 29-71 1-44 (440)
298 PRK12771 putative glutamate sy 95.1 0.018 3.9E-07 62.7 3.9 37 30-66 135-172 (564)
299 PRK13984 putative oxidoreducta 95.1 0.023 5E-07 62.5 4.8 37 30-66 281-318 (604)
300 PRK09754 phenylpropionate diox 95.1 0.02 4.4E-07 59.4 3.9 35 32-66 3-40 (396)
301 COG4529 Uncharacterized protei 95.1 0.23 4.9E-06 51.3 11.2 33 33-65 2-38 (474)
302 PRK10262 thioredoxin reductase 95.0 0.33 7.1E-06 48.8 12.3 31 34-64 148-179 (321)
303 COG3634 AhpF Alkyl hydroperoxi 94.9 0.014 2.9E-07 56.9 2.0 61 206-276 399-460 (520)
304 TIGR01292 TRX_reduct thioredox 94.9 0.36 7.8E-06 47.7 12.2 56 210-276 190-246 (300)
305 PRK14989 nitrite reductase sub 94.7 0.19 4.1E-06 57.1 10.7 56 209-277 199-254 (847)
306 PRK12831 putative oxidoreducta 94.7 0.19 4.2E-06 53.2 10.2 32 33-64 282-314 (464)
307 PRK09564 coenzyme A disulfide 94.7 0.026 5.6E-07 59.6 3.6 33 34-66 2-37 (444)
308 TIGR01316 gltA glutamate synth 94.7 0.24 5.2E-06 52.3 10.8 31 34-64 274-305 (449)
309 PTZ00318 NADH dehydrogenase-li 94.6 0.039 8.5E-07 57.8 4.5 37 30-66 8-45 (424)
310 PLN02507 glutathione reductase 94.3 0.38 8.3E-06 51.5 11.4 32 34-65 205-237 (499)
311 KOG4405 GDP dissociation inhib 94.1 0.054 1.2E-06 54.0 4.0 41 31-71 7-48 (547)
312 TIGR02374 nitri_red_nirB nitri 94.0 0.28 6.2E-06 55.6 10.0 31 34-64 142-173 (785)
313 COG0493 GltD NADPH-dependent g 93.7 0.05 1.1E-06 57.0 3.2 35 32-66 123-158 (457)
314 KOG2403 Succinate dehydrogenas 93.7 0.1 2.2E-06 54.2 5.3 33 31-63 54-87 (642)
315 COG5044 MRS6 RAB proteins gera 93.7 0.09 2E-06 51.9 4.6 38 32-69 6-44 (434)
316 KOG1800 Ferredoxin/adrenodoxin 93.7 0.074 1.6E-06 52.7 4.1 36 32-67 20-58 (468)
317 COG1206 Gid NAD(FAD)-utilizing 93.2 0.073 1.6E-06 51.8 3.1 33 34-66 5-38 (439)
318 TIGR03169 Nterm_to_SelD pyridi 93.1 0.085 1.8E-06 54.0 3.8 33 34-66 1-37 (364)
319 KOG0399 Glutamate synthase [Am 93.1 0.12 2.7E-06 57.8 4.9 37 31-67 1784-1821(2142)
320 COG4716 Myosin-crossreactive a 92.7 0.43 9.4E-06 47.3 7.6 50 17-66 7-61 (587)
321 KOG3851 Sulfide:quinone oxidor 92.2 0.12 2.7E-06 49.9 3.2 39 29-67 36-77 (446)
322 KOG2755 Oxidoreductase [Genera 92.2 0.11 2.3E-06 49.0 2.7 32 35-66 2-36 (334)
323 PF02558 ApbA: Ketopantoate re 91.6 0.15 3.2E-06 44.9 2.9 30 35-64 1-31 (151)
324 COG0446 HcaD Uncharacterized N 91.3 0.17 3.7E-06 52.5 3.5 35 32-66 136-171 (415)
325 COG0569 TrkA K+ transport syst 91.2 0.19 4.1E-06 47.5 3.3 32 34-65 2-34 (225)
326 PRK05329 anaerobic glycerol-3- 90.6 0.65 1.4E-05 48.3 6.9 58 204-273 266-323 (422)
327 PRK12778 putative bifunctional 90.5 1.3 2.8E-05 50.1 9.8 31 34-64 572-604 (752)
328 PRK09754 phenylpropionate diox 90.2 0.27 5.9E-06 51.0 3.7 34 33-66 145-179 (396)
329 TIGR02733 desat_CrtD C-3',4' d 90.0 0.67 1.5E-05 49.6 6.7 70 193-272 228-298 (492)
330 KOG0404 Thioredoxin reductase 89.7 0.28 6.1E-06 45.1 2.8 33 33-65 9-42 (322)
331 PF01210 NAD_Gly3P_dh_N: NAD-d 89.6 0.24 5.3E-06 43.9 2.5 29 35-63 2-31 (157)
332 PRK07251 pyridine nucleotide-d 89.0 0.37 8E-06 50.8 3.7 33 34-66 159-192 (438)
333 PRK04965 NADH:flavorubredoxin 88.8 0.4 8.8E-06 49.3 3.8 34 33-66 142-176 (377)
334 PF13738 Pyr_redox_3: Pyridine 88.8 0.42 9.2E-06 44.1 3.6 34 32-65 167-201 (203)
335 PRK05708 2-dehydropantoate 2-r 88.7 0.39 8.5E-06 47.8 3.5 31 34-64 4-35 (305)
336 PRK07846 mycothione reductase; 88.5 0.43 9.4E-06 50.4 3.8 34 33-66 167-201 (451)
337 PRK06912 acoL dihydrolipoamide 88.3 0.45 9.7E-06 50.5 3.8 34 33-66 171-205 (458)
338 TIGR01421 gluta_reduc_1 glutat 88.2 0.44 9.5E-06 50.4 3.6 33 34-66 168-201 (450)
339 PF02737 3HCDH_N: 3-hydroxyacy 88.2 0.42 9E-06 43.5 3.0 30 35-64 2-32 (180)
340 PRK06467 dihydrolipoamide dehy 88.2 0.44 9.6E-06 50.7 3.6 33 34-66 176-209 (471)
341 TIGR02053 MerA mercuric reduct 88.0 0.46 1E-05 50.4 3.7 34 33-66 167-201 (463)
342 COG3486 IucD Lysine/ornithine 87.6 0.66 1.4E-05 46.8 4.2 38 29-66 2-41 (436)
343 COG1252 Ndh NADH dehydrogenase 87.6 0.37 7.9E-06 49.4 2.5 35 32-66 155-203 (405)
344 PRK06370 mercuric reductase; V 87.0 0.59 1.3E-05 49.6 3.8 34 33-66 172-206 (463)
345 PRK06115 dihydrolipoamide dehy 86.7 0.62 1.4E-05 49.5 3.8 34 33-66 175-209 (466)
346 PRK13512 coenzyme A disulfide 86.5 0.61 1.3E-05 49.1 3.5 32 34-65 150-182 (438)
347 PRK06416 dihydrolipoamide dehy 86.5 0.66 1.4E-05 49.2 3.8 33 34-66 174-207 (462)
348 TIGR02731 phytoene_desat phyto 86.4 1.2 2.6E-05 47.1 5.8 53 205-266 221-274 (453)
349 TIGR03385 CoA_CoA_reduc CoA-di 86.4 0.65 1.4E-05 48.7 3.6 33 33-65 138-171 (427)
350 PF03721 UDPG_MGDP_dh_N: UDP-g 86.1 0.74 1.6E-05 42.1 3.4 30 35-64 3-33 (185)
351 PRK06249 2-dehydropantoate 2-r 86.0 0.87 1.9E-05 45.5 4.2 31 34-64 7-38 (313)
352 PRK05249 soluble pyridine nucl 86.0 0.72 1.6E-05 48.9 3.8 34 33-66 176-210 (461)
353 PF02254 TrkA_N: TrkA-N domain 85.9 0.77 1.7E-05 38.1 3.2 30 35-64 1-31 (116)
354 PRK06292 dihydrolipoamide dehy 85.7 0.75 1.6E-05 48.8 3.7 34 33-66 170-204 (460)
355 TIGR03452 mycothione_red mycot 85.3 0.8 1.7E-05 48.4 3.7 33 33-65 170-203 (452)
356 TIGR01424 gluta_reduc_2 glutat 85.0 0.88 1.9E-05 48.0 3.8 33 34-66 168-201 (446)
357 PRK14989 nitrite reductase sub 85.0 0.84 1.8E-05 52.0 3.9 34 34-67 5-43 (847)
358 PRK12921 2-dehydropantoate 2-r 84.8 0.79 1.7E-05 45.5 3.2 28 35-62 3-31 (305)
359 PRK06522 2-dehydropantoate 2-r 84.7 0.86 1.9E-05 45.2 3.4 29 35-63 3-32 (304)
360 PTZ00153 lipoamide dehydrogena 84.5 0.93 2E-05 50.0 3.8 33 34-66 314-347 (659)
361 PRK06129 3-hydroxyacyl-CoA deh 84.5 0.79 1.7E-05 45.7 3.1 31 34-64 4-35 (308)
362 KOG2018 Predicted dinucleotide 84.2 0.65 1.4E-05 44.8 2.1 49 15-64 58-108 (430)
363 TIGR03143 AhpF_homolog putativ 84.2 0.99 2.1E-05 49.1 3.8 33 33-65 144-177 (555)
364 PTZ00058 glutathione reductase 83.9 0.99 2.1E-05 48.9 3.7 33 33-65 238-271 (561)
365 PRK01438 murD UDP-N-acetylmura 83.7 0.99 2.2E-05 48.1 3.6 31 34-64 18-49 (480)
366 PRK07845 flavoprotein disulfid 83.7 1.1 2.3E-05 47.6 3.8 33 34-66 179-212 (466)
367 PRK06116 glutathione reductase 83.6 1.1 2.4E-05 47.4 3.8 33 33-65 168-201 (450)
368 PRK09564 coenzyme A disulfide 83.4 1 2.2E-05 47.5 3.4 33 33-65 150-183 (444)
369 PRK06719 precorrin-2 dehydroge 82.8 1.3 2.7E-05 39.3 3.3 28 33-60 14-42 (157)
370 PF13241 NAD_binding_7: Putati 82.8 0.98 2.1E-05 36.8 2.4 32 32-63 7-39 (103)
371 PF01593 Amino_oxidase: Flavin 82.7 0.81 1.8E-05 47.5 2.4 28 42-69 1-29 (450)
372 PRK08010 pyridine nucleotide-d 82.7 1.3 2.7E-05 46.8 3.8 33 34-66 160-193 (441)
373 PRK04148 hypothetical protein; 82.7 1.3 2.7E-05 37.9 3.0 32 33-65 18-50 (134)
374 PLN02546 glutathione reductase 82.6 1.2 2.6E-05 48.3 3.7 34 33-66 253-287 (558)
375 PRK13748 putative mercuric red 82.4 1.2 2.5E-05 48.7 3.6 31 34-64 272-303 (561)
376 PRK08293 3-hydroxybutyryl-CoA 82.3 1.2 2.7E-05 43.8 3.4 31 34-64 5-36 (287)
377 PRK06718 precorrin-2 dehydroge 81.9 1.3 2.9E-05 41.0 3.2 30 33-62 11-41 (202)
378 PRK14694 putative mercuric red 81.6 1.5 3.3E-05 46.6 4.0 32 33-64 179-211 (468)
379 PRK14727 putative mercuric red 81.5 1.3 2.9E-05 47.2 3.5 31 33-63 189-220 (479)
380 PRK09260 3-hydroxybutyryl-CoA 81.3 1.3 2.9E-05 43.6 3.2 30 35-64 4-34 (288)
381 PRK07066 3-hydroxybutyryl-CoA 80.7 1.6 3.4E-05 43.7 3.4 31 34-64 9-40 (321)
382 PRK02705 murD UDP-N-acetylmura 80.5 1.4 3.1E-05 46.6 3.4 31 35-65 3-34 (459)
383 PRK07819 3-hydroxybutyryl-CoA 80.4 1.6 3.5E-05 43.0 3.4 31 34-64 7-38 (286)
384 TIGR02732 zeta_caro_desat caro 80.4 3.7 8E-05 43.7 6.4 34 34-67 1-35 (474)
385 PRK14620 NAD(P)H-dependent gly 80.1 1.6 3.4E-05 43.9 3.4 29 35-63 3-32 (326)
386 PF00899 ThiF: ThiF family; I 80.1 1.8 4E-05 37.1 3.3 33 33-65 3-37 (135)
387 PRK08229 2-dehydropantoate 2-r 80.0 1.6 3.5E-05 44.2 3.4 30 34-63 4-34 (341)
388 PRK12770 putative glutamate sy 79.9 1.7 3.6E-05 44.3 3.4 31 34-64 174-206 (352)
389 PRK14106 murD UDP-N-acetylmura 79.8 1.5 3.3E-05 46.2 3.3 32 33-64 6-38 (450)
390 PLN02487 zeta-carotene desatur 79.8 3.6 7.8E-05 44.7 6.1 63 205-273 303-365 (569)
391 KOG3923 D-aspartate oxidase [A 79.5 1.8 3.9E-05 41.8 3.2 33 31-63 2-42 (342)
392 PRK07530 3-hydroxybutyryl-CoA 79.4 2.1 4.5E-05 42.4 3.8 31 34-64 6-37 (292)
393 TIGR01423 trypano_reduc trypan 79.0 2 4.4E-05 45.8 3.9 34 33-66 188-225 (486)
394 PF01488 Shikimate_DH: Shikima 78.9 1.9 4.1E-05 37.1 3.0 32 32-63 12-45 (135)
395 TIGR01438 TGR thioredoxin and 78.9 1.7 3.7E-05 46.4 3.3 30 34-63 182-212 (484)
396 PTZ00052 thioredoxin reductase 78.6 1.8 3.8E-05 46.5 3.3 30 34-63 184-214 (499)
397 PRK06035 3-hydroxyacyl-CoA deh 78.4 2 4.2E-05 42.5 3.3 31 34-64 5-36 (291)
398 COG2072 TrkA Predicted flavopr 78.4 2.4 5.3E-05 44.6 4.2 34 33-66 176-210 (443)
399 TIGR01470 cysG_Nterm siroheme 78.2 2.1 4.5E-05 39.9 3.2 29 34-62 11-40 (205)
400 COG1893 ApbA Ketopantoate redu 77.8 1.9 4.2E-05 42.8 3.0 31 35-65 3-34 (307)
401 COG1004 Ugd Predicted UDP-gluc 77.7 2.2 4.8E-05 43.1 3.4 30 35-64 3-33 (414)
402 PRK15116 sulfur acceptor prote 77.7 2.2 4.7E-05 41.4 3.2 35 31-65 29-65 (268)
403 TIGR02354 thiF_fam2 thiamine b 77.6 2.2 4.7E-05 39.5 3.2 34 31-64 20-55 (200)
404 cd01080 NAD_bind_m-THF_DH_Cycl 77.6 2.9 6.3E-05 37.5 3.9 33 31-63 43-77 (168)
405 PLN02172 flavin-containing mon 77.4 2.4 5.3E-05 44.8 3.9 32 33-64 205-237 (461)
406 TIGR00518 alaDH alanine dehydr 77.2 2.2 4.7E-05 43.7 3.3 33 31-63 166-199 (370)
407 cd01075 NAD_bind_Leu_Phe_Val_D 77.0 2.3 5E-05 39.4 3.2 30 34-63 30-60 (200)
408 PTZ00318 NADH dehydrogenase-li 77.0 2.3 5E-05 44.6 3.5 33 34-66 175-222 (424)
409 PRK12475 thiamine/molybdopteri 76.6 2.2 4.9E-05 43.0 3.2 35 31-65 23-59 (338)
410 PRK14618 NAD(P)H-dependent gly 76.5 2.8 6.1E-05 42.2 3.9 30 34-63 6-36 (328)
411 KOG2495 NADH-dehydrogenase (ub 76.3 1.5 3.3E-05 44.6 1.8 30 35-64 221-265 (491)
412 COG0686 Ald Alanine dehydrogen 75.9 2.8 6.1E-05 40.8 3.4 35 30-64 166-201 (371)
413 COG1748 LYS9 Saccharopine dehy 75.7 2.8 6E-05 42.8 3.5 31 34-64 3-35 (389)
414 PRK06130 3-hydroxybutyryl-CoA 75.4 3.1 6.7E-05 41.5 3.8 31 34-64 6-37 (311)
415 cd01483 E1_enzyme_family Super 75.4 2.9 6.2E-05 36.3 3.2 32 35-66 2-35 (143)
416 PRK05808 3-hydroxybutyryl-CoA 75.1 2.5 5.5E-05 41.5 3.1 31 34-64 5-36 (282)
417 PF01262 AlaDh_PNT_C: Alanine 74.8 2.9 6.3E-05 37.5 3.1 33 32-64 20-53 (168)
418 PRK07688 thiamine/molybdopteri 74.3 3 6.5E-05 42.1 3.4 35 31-65 23-59 (339)
419 cd05311 NAD_bind_2_malic_enz N 73.8 2.8 6.1E-05 39.6 2.9 33 33-65 26-62 (226)
420 TIGR01763 MalateDH_bact malate 73.7 3.2 6.9E-05 41.3 3.4 28 35-62 4-33 (305)
421 PRK00094 gpsA NAD(P)H-dependen 73.4 3.2 6.9E-05 41.6 3.4 31 34-64 3-34 (325)
422 cd01487 E1_ThiF_like E1_ThiF_l 73.2 3.6 7.8E-05 37.1 3.3 31 35-65 2-34 (174)
423 PLN02545 3-hydroxybutyryl-CoA 73.1 3.3 7.2E-05 40.9 3.4 30 35-64 7-37 (295)
424 PF13478 XdhC_C: XdhC Rossmann 73.0 3.8 8.3E-05 35.3 3.2 31 35-65 1-32 (136)
425 TIGR03026 NDP-sugDHase nucleot 72.9 3.6 7.7E-05 42.9 3.7 30 35-64 3-33 (411)
426 cd00401 AdoHcyase S-adenosyl-L 71.7 3.7 8E-05 42.5 3.4 32 33-64 203-235 (413)
427 PLN02612 phytoene desaturase 71.3 6.3 0.00014 43.0 5.3 47 207-266 318-364 (567)
428 PRK07233 hypothetical protein; 71.1 6.2 0.00014 41.2 5.1 55 203-272 204-258 (434)
429 PRK11749 dihydropyrimidine deh 70.6 4.1 8.9E-05 43.1 3.6 32 33-64 274-307 (457)
430 PRK12549 shikimate 5-dehydroge 70.5 4 8.6E-05 40.1 3.2 31 33-63 128-160 (284)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 70.5 3.8 8.3E-05 43.8 3.3 31 34-64 7-38 (503)
432 TIGR01915 npdG NADPH-dependent 70.5 4.4 9.5E-05 38.1 3.4 30 35-64 3-34 (219)
433 TIGR02356 adenyl_thiF thiazole 70.4 4.2 9.1E-05 37.7 3.2 36 30-65 19-56 (202)
434 PRK11064 wecC UDP-N-acetyl-D-m 70.3 4.2 9.1E-05 42.4 3.5 31 34-64 5-36 (415)
435 PRK14619 NAD(P)H-dependent gly 69.9 4 8.7E-05 40.6 3.2 30 34-63 6-36 (308)
436 cd05292 LDH_2 A subgroup of L- 69.9 4.5 9.7E-05 40.3 3.5 31 34-64 2-35 (308)
437 TIGR02853 spore_dpaA dipicolin 69.8 4.2 9.1E-05 40.0 3.2 32 33-64 152-184 (287)
438 PRK08328 hypothetical protein; 69.3 4.5 9.8E-05 38.4 3.2 34 31-64 26-61 (231)
439 cd00757 ThiF_MoeB_HesA_family 69.2 4.5 9.7E-05 38.3 3.2 34 31-64 20-55 (228)
440 TIGR02355 moeB molybdopterin s 69.1 5.6 0.00012 38.0 3.8 37 30-66 22-60 (240)
441 cd01486 Apg7 Apg7 is an E1-lik 68.6 5.4 0.00012 39.2 3.6 33 35-67 2-36 (307)
442 PRK08644 thiamine biosynthesis 68.3 5 0.00011 37.5 3.2 35 31-65 27-63 (212)
443 COG1250 FadB 3-hydroxyacyl-CoA 68.2 5.1 0.00011 39.5 3.4 30 35-64 6-36 (307)
444 cd05291 HicDH_like L-2-hydroxy 68.1 5.2 0.00011 39.8 3.5 30 35-64 3-35 (306)
445 PRK09496 trkA potassium transp 67.6 4.8 0.0001 42.5 3.3 31 34-64 2-33 (453)
446 PRK11730 fadB multifunctional 67.6 4.9 0.00011 45.1 3.5 31 34-64 315-346 (715)
447 TIGR01381 E1_like_apg7 E1-like 67.3 5.2 0.00011 43.4 3.4 36 32-67 338-375 (664)
448 PRK12548 shikimate 5-dehydroge 67.3 5 0.00011 39.6 3.1 32 33-64 127-160 (289)
449 TIGR03736 PRTRC_ThiF PRTRC sys 67.2 6 0.00013 37.8 3.5 34 31-64 10-55 (244)
450 cd05191 NAD_bind_amino_acid_DH 67.1 6.5 0.00014 30.7 3.2 30 33-62 24-55 (86)
451 KOG2304 3-hydroxyacyl-CoA dehy 67.1 6.1 0.00013 36.7 3.3 37 29-65 8-45 (298)
452 TIGR02437 FadB fatty oxidation 66.9 5.1 0.00011 44.9 3.5 31 34-64 315-346 (714)
453 PRK05690 molybdopterin biosynt 66.8 5.7 0.00012 38.1 3.4 35 31-65 31-67 (245)
454 cd01485 E1-1_like Ubiquitin ac 66.1 6.3 0.00014 36.4 3.4 35 31-65 18-54 (198)
455 PRK10669 putative cation:proto 65.9 6.5 0.00014 42.8 4.0 33 32-64 417-450 (558)
456 PRK08268 3-hydroxy-acyl-CoA de 65.9 5.6 0.00012 42.7 3.4 30 35-64 10-40 (507)
457 PF03807 F420_oxidored: NADP o 65.8 6.6 0.00014 31.1 3.1 30 35-64 2-36 (96)
458 PLN02712 arogenate dehydrogena 65.3 8.2 0.00018 42.8 4.7 31 33-63 53-84 (667)
459 cd01484 E1-2_like Ubiquitin ac 65.3 6.3 0.00014 37.4 3.3 30 35-64 2-33 (234)
460 TIGR00936 ahcY adenosylhomocys 65.2 6.4 0.00014 40.6 3.5 33 32-64 195-228 (406)
461 PRK07417 arogenate dehydrogena 65.0 5.6 0.00012 39.0 3.0 29 35-63 3-32 (279)
462 cd01492 Aos1_SUMO Ubiquitin ac 64.9 6.9 0.00015 36.1 3.4 34 31-64 20-55 (197)
463 PRK07531 bifunctional 3-hydrox 64.8 6.1 0.00013 42.3 3.5 31 34-64 6-37 (495)
464 PLN02353 probable UDP-glucose 64.6 6.5 0.00014 41.6 3.6 31 34-64 3-36 (473)
465 PRK02472 murD UDP-N-acetylmura 64.6 5.6 0.00012 41.9 3.2 31 34-64 7-38 (447)
466 PRK06223 malate dehydrogenase; 64.1 6.9 0.00015 38.9 3.5 30 34-63 4-35 (307)
467 cd01339 LDH-like_MDH L-lactate 63.9 5.9 0.00013 39.3 3.0 30 35-64 1-32 (300)
468 COG3486 IucD Lysine/ornithine 63.8 16 0.00035 37.2 5.9 56 208-273 289-346 (436)
469 COG3075 GlpB Anaerobic glycero 63.7 8.8 0.00019 37.9 3.9 54 206-271 267-320 (421)
470 PLN02520 bifunctional 3-dehydr 63.6 6.2 0.00013 42.5 3.2 31 33-63 380-411 (529)
471 PRK15057 UDP-glucose 6-dehydro 63.4 7 0.00015 40.3 3.5 30 35-64 3-32 (388)
472 KOG1346 Programmed cell death 63.2 56 0.0012 33.5 9.4 134 24-266 170-309 (659)
473 TIGR03376 glycerol3P_DH glycer 63.2 7.4 0.00016 39.3 3.5 29 34-62 1-38 (342)
474 PRK08306 dipicolinate synthase 62.9 7.3 0.00016 38.6 3.4 33 32-64 152-185 (296)
475 PRK05476 S-adenosyl-L-homocyst 62.6 7 0.00015 40.6 3.3 32 33-64 213-245 (425)
476 TIGR00507 aroE shikimate 5-deh 62.2 7.7 0.00017 37.8 3.4 31 33-63 118-149 (270)
477 TIGR02441 fa_ox_alpha_mit fatt 62.2 6.6 0.00014 44.2 3.2 31 34-64 337-368 (737)
478 PRK09496 trkA potassium transp 62.0 7.3 0.00016 41.1 3.4 32 33-64 232-264 (453)
479 PRK06153 hypothetical protein; 61.8 8.3 0.00018 39.2 3.5 34 32-65 176-211 (393)
480 PF00056 Ldh_1_N: lactate/mala 61.8 8.6 0.00019 33.3 3.3 31 34-64 2-36 (141)
481 PRK08223 hypothetical protein; 61.7 8 0.00017 37.8 3.3 36 30-65 25-62 (287)
482 PTZ00082 L-lactate dehydrogena 61.7 10 0.00022 38.0 4.2 34 32-65 6-41 (321)
483 cd00755 YgdL_like Family of ac 61.6 7.7 0.00017 36.8 3.1 34 32-65 11-46 (231)
484 cd01078 NAD_bind_H4MPT_DH NADP 61.1 8.5 0.00018 35.3 3.3 31 33-63 29-61 (194)
485 TIGR02032 GG-red-SF geranylger 60.9 22 0.00047 34.6 6.5 51 203-267 97-147 (295)
486 PRK08017 oxidoreductase; Provi 60.9 8.8 0.00019 36.6 3.6 30 35-64 5-36 (256)
487 PF03446 NAD_binding_2: NAD bi 60.8 8.1 0.00018 34.3 3.0 31 34-64 3-34 (163)
488 PLN02494 adenosylhomocysteinas 60.5 8.9 0.00019 40.2 3.5 32 33-64 255-287 (477)
489 PRK00066 ldh L-lactate dehydro 60.0 9.2 0.0002 38.2 3.5 31 33-63 7-40 (315)
490 cd01488 Uba3_RUB Ubiquitin act 59.9 8.5 0.00018 37.8 3.2 30 35-64 2-33 (291)
491 PRK05562 precorrin-2 dehydroge 59.8 9.3 0.0002 35.9 3.3 30 32-61 25-55 (223)
492 cd01489 Uba2_SUMO Ubiquitin ac 59.8 8.1 0.00018 38.4 3.0 31 35-65 2-34 (312)
493 cd01490 Ube1_repeat2 Ubiquitin 59.7 8.2 0.00018 40.2 3.1 31 35-65 2-39 (435)
494 PRK09424 pntA NAD(P) transhydr 59.5 8.4 0.00018 41.1 3.3 34 31-64 164-198 (509)
495 COG2085 Predicted dinucleotide 59.4 9.1 0.0002 35.3 3.0 29 35-63 4-33 (211)
496 PRK08762 molybdopterin biosynt 59.3 8.9 0.00019 39.4 3.4 35 31-65 134-170 (376)
497 TIGR01505 tartro_sem_red 2-hyd 59.1 7.6 0.00017 38.2 2.8 30 35-64 2-32 (291)
498 PRK12810 gltD glutamate syntha 58.8 20 0.00044 38.0 6.1 62 206-277 338-410 (471)
499 PRK11154 fadJ multifunctional 58.2 9.1 0.0002 42.9 3.5 31 34-64 311-343 (708)
500 PTZ00075 Adenosylhomocysteinas 57.6 10 0.00023 39.8 3.5 32 33-64 255-287 (476)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.8e-86 Score=706.74 Aligned_cols=538 Identities=61% Similarity=1.035 Sum_probs=404.0
Q ss_pred CCCcccccccccCCC----------CCCccEEEECCCcchHHHHHhhhcCCeEEEEeeCCCCCCCCCccchhhhhhccCC
Q 008675 15 APNYSFMHNATAAQP----------VSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSD 84 (557)
Q Consensus 15 ~~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~ 84 (557)
..+|+|+..+...+. ..+|||||||+|+|||++|.+|+++.+|||||+|+.....+.+..+..+.....+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d 107 (587)
T PLN02785 28 PYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLAD 107 (587)
T ss_pred ccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcccc
Confidence 467788888877666 5689999999999999999999998899999999864333444444444444457
Q ss_pred CCCCCcCccccCCCcccccCcceecccccccCceeecCCcchhccCCCChhhhhhhhhhhhhhhccCCCCCchhHHHHHH
Q 008675 85 LSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDG 164 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 164 (557)
|.+.+.+|....++++.+.|||+|||+|++|+|+|.|+++++++..||+|+.+.++|++.|+.+...|...++...+.++
T Consensus 108 ~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a 187 (587)
T PLN02785 108 TSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDS 187 (587)
T ss_pred cCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHH
Confidence 88888888888888999999999999999999999999999988889999999999999998765556667888999999
Q ss_pred HHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHHhhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCC
Q 008675 165 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT 244 (557)
Q Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~ 244 (557)
+.++|+++++++..+...|...+.++++..|.|+++..+++.+.+.|++|++++.|+||++++++ ...+|+||++.+.+
T Consensus 188 ~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~ 266 (587)
T PLN02785 188 LLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDEN 266 (587)
T ss_pred HHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECC
Confidence 99999998887766766666677777777899999888777778899999999999999998642 22389999998766
Q ss_pred CCeeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecCCccCCcCCCCCCceEEeeCCCcccchhHH
Q 008675 245 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ 316 (557)
Q Consensus 245 g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~p~VG~nl~dH~~~~~~~~~~~~~~~~~~~ 316 (557)
|..+++.+..+++++||||||+|+||+|||+|| ++|||++.|+|+||+||+|||...+.+..+.+......+
T Consensus 267 g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~ 346 (587)
T PLN02785 267 GNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQ 346 (587)
T ss_pred CceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHh
Confidence 765554322124689999999999999999999 899999999999999999999998888766553322222
Q ss_pred HhhccchhhhhhhccCCcccCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccceEEEEeecccC
Q 008675 317 VVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPV 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 396 (557)
.++....+.|.....+...... .+....+.+....+.+...++....++.+..++......+...+....++..+++|.
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~ 425 (587)
T PLN02785 347 TVGITKMGVYIEASSGFGQSPD-SIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPI 425 (587)
T ss_pred hhhhhccccceecccccccCch-hhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCCC
Confidence 2222222233221111100000 000011111111111111112222233333332111111111121124556778999
Q ss_pred cceEEEeccCCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHHccccccccccccCc-chhhhccccCCCCCCCCCCCCC
Q 008675 397 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMS-VPILVNMTASAPVNLLPRHSNA 475 (557)
Q Consensus 397 s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~ 475 (557)
|||+|+|+++||.+.|.|++||+.+|.|++.+.++++++++++++..++.+...+.. .+++.+.....+.++.|....+
T Consensus 426 SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 505 (587)
T PLN02785 426 STGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTND 505 (587)
T ss_pred cceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999888877533211 1122222222222334544467
Q ss_pred hHHHHHHHHhccccccccccccccCcccCCCCeEeccCCceEeeccCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhcc
Q 008675 476 STSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 554 (557)
Q Consensus 476 ~~~~~~~~~~~~~~~~H~~GT~rMG~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi~ala~r~a~~i~~~~~~~~ 554 (557)
+++|++|+|+...+.||++|||+||+|||+++||||++|||||||||||.+|++||++|+||||||+|++|+++++.++
T Consensus 506 d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~~ 584 (587)
T PLN02785 506 TKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRA 584 (587)
T ss_pred HHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=2.5e-86 Score=676.13 Aligned_cols=507 Identities=39% Similarity=0.554 Sum_probs=381.4
Q ss_pred CCcccccccccCCCCCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCCCCCCCCccchhhhhh----ccCCCCCCC
Q 008675 16 PNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGA----ALSDLSSTS 89 (557)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~~~~~~~~~~~~~~~~----~~~~~~~~~ 89 (557)
+..+++......+...+|||||||||+|||++|.||+| ..||||||||+.+ +...++..... ...||.|.+
T Consensus 41 ~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t 117 (623)
T KOG1238|consen 41 DPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHT 117 (623)
T ss_pred CcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcC
Confidence 34445555556667889999999999999999999999 5999999999876 22233223333 334789888
Q ss_pred cCccc----cCCCcccccCcceecccccccCceeecCCcchhcc------CCCChhhhhhhhhhhhhhhccCCCC-----
Q 008675 90 PSQRF----ISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE------VGWDERLVNESYQWVEKVVAFEPPM----- 154 (557)
Q Consensus 90 ~~~~~----~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~~------~gw~~~~~~~~~~~~e~~~~~~~~~----- 154 (557)
.++.. +.++...|+|||+|||+|.+|+|+|.|+++.||+. +||+|+++.+||++.|+.....+..
T Consensus 118 ~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~ 197 (623)
T KOG1238|consen 118 EPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHG 197 (623)
T ss_pred ccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccc
Confidence 87765 78889999999999999999999999999765543 5799999999999999875544332
Q ss_pred -------------CchhHHHHHHHHHcCCCCCCCCCcCCCCceeeeeeE---ECCCCccccHHH-hhh-h-cCCCCcEEE
Q 008675 155 -------------RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-Y-ANPSGLTLL 215 (557)
Q Consensus 155 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~g~r~~~~~-~l~-~-~~~~n~~i~ 215 (557)
.+....+.++..++|.... |..+....+... ...+|.|+++.. |+. . ..|+|+++.
T Consensus 198 ~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~ 272 (623)
T KOG1238|consen 198 AGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHIS 272 (623)
T ss_pred cCCcceeccccccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCcccccc
Confidence 2334567777777774321 122222222221 136788888765 665 3 347899999
Q ss_pred cCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecC
Q 008675 216 LHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQ 287 (557)
Q Consensus 216 ~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~ 287 (557)
.++.|++|++|..+ .++.||++....|+.++++ +.||||||||||+||||||+|| ++|||++.|+
T Consensus 273 ~~~~vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dL 345 (623)
T KOG1238|consen 273 RNAAVTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDL 345 (623)
T ss_pred ccceEEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccC
Confidence 99999999999653 5999999986337888887 7899999999999999999999 9999999999
Q ss_pred CccCCcCCCCCCceEEeeCCCcccchhHHHhhccchhhhhhhccCCcccCCCCCCCCccccccccccccc---------C
Q 008675 288 PLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSK---------V 358 (557)
Q Consensus 288 p~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 358 (557)
|+||+|||||+...+++....+......+..++.....|....+|+....+ ....+++......... .
T Consensus 346 P~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~---~e~~~f~~t~~~~~~~~~PD~~~~~~ 422 (623)
T KOG1238|consen 346 PGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG---VETLGFINTVSSNLSLDWPDIELHFV 422 (623)
T ss_pred cccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc---ceeeEEeccccccCcCCCCCeeEEec
Confidence 999999999999987776665554444455555555677776666543311 0111222211111000 0
Q ss_pred CC---CCCCH-------HHHHHHHhhhccCCCCCccceEEEEeecccCcceEEEeccCCCCCCCeEecCCCCCHHHHHHH
Q 008675 359 PP---KQRTP-------EAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRC 428 (557)
Q Consensus 359 ~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~ 428 (557)
.. ..... ++.+..+... .....+.++..+++|.|||+|.|+++||.+.|+|++||+.+|+|++.+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~ 497 (623)
T KOG1238|consen 423 AGSLSSDGLTALRKALGEIYQALFGEL-----TNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATL 497 (623)
T ss_pred cccccccchhhhhhhcchHHHHhhhhh-----hcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHH
Confidence 00 00000 1111111111 111245677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccccccccCcc--hhhhccccCCCCCCCCCCCCChHHHHHHHHhccccccccccccccC------
Q 008675 429 VQGISTIEKIIESKSFSKFKYESMSV--PILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------ 500 (557)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG------ 500 (557)
.++++.+.++.++..|+++......+ ++|-. ....+|++|+||+|....+.||++|||+||
T Consensus 498 vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~-----------~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~ 566 (623)
T KOG1238|consen 498 VEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDL-----------LAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPT 566 (623)
T ss_pred HHHHHHHHHHHcCHHHHHhcchhccccCCCccc-----------ccCCCHHHHHHHHHhccceeeccCCceEeCCccCCC
Confidence 99999999999999999988766421 11111 124689999999999999999999999999
Q ss_pred cccCCCCeEeccCCceEeeccCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccCC
Q 008675 501 KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 556 (557)
Q Consensus 501 ~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi~ala~r~a~~i~~~~~~~~~~ 556 (557)
+|||+++||||++||||+|||+||.+|++||++|+||||||+||.|++++...+.+
T Consensus 567 aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 567 AVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred cccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 89999999999999999999999999999999999999999999998888777654
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2.9e-74 Score=619.40 Aligned_cols=487 Identities=26% Similarity=0.351 Sum_probs=341.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCCCC-CCCCccchhhhhhc----cCCCCCCCcCccccCCCccc
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAA----LSDLSSTSPSQRFISEDGVI 101 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 101 (557)
+..+|||||||||++|+++|.+|+| |.+|||||+|+... ..+....+..+... ..+|.+.+.++....++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 3457999999999999999999999 89999999997531 12222222211111 12455666677777777888
Q ss_pred ccCcceecccccccCceeecCCcchhcc-------CCCChhhhhhhhhhhhhhhcc-------------C---CCCCchh
Q 008675 102 NSRARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAF-------------E---PPMRQWQ 158 (557)
Q Consensus 102 ~~~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~e~~~~~-------------~---~~~~~~~ 158 (557)
+.+|++|||+|.+|+|.|.|+++.+|+. .+|+|++++|||+++|+...- . ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 9999999999999999999999977653 479999999999999976410 0 1123445
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHH-hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEE
Q 008675 159 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAH 236 (557)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~ 236 (557)
+.+.++++++|++...........++......| .+|.|+++.. |++ ..+++|++|++++.|+||+++++ +++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~-~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~ 235 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTV-TNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV 235 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEeeec-CCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence 678889999998754322111122222111122 5788888765 776 44578999999999999999854 999
Q ss_pred EEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecCCccCCcCCCCCCceEEeeCCC
Q 008675 237 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 308 (557)
Q Consensus 237 gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~p~VG~nl~dH~~~~~~~~~~~ 308 (557)
||++.+.++ ..++. ++|+||||||+|+||+|||+|| ++||+++.++|+||+|||||+...+.+.++.
T Consensus 236 GV~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~ 310 (560)
T PRK02106 236 GVEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ 310 (560)
T ss_pred EEEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence 999987443 33443 5899999999999999999999 8899999999999999999999888877665
Q ss_pred cccchh-HHHh-hccchhhhhhhccCCcccCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccce
Q 008675 309 PVEVSL-IQVV-GITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 386 (557)
Q Consensus 309 ~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (557)
+..... ...+ .......|.....|..... .....++... ..... .+.... .++...+...... .......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~-~~~~~--~p~~~~-~~~~~~~~~~~~~-~~~~~~~ 382 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWLFTGTGLGASN---HFEAGGFIRS-RAGVD--WPNIQY-HFLPVAIRYDGSN-AVKGHGF 382 (560)
T ss_pred CcccccccchhhhhHHHHHHHhcCCCCcccc---ccceeeEEec-CCCCC--CCCeEE-EEeeccccccCCC-CCCCCeE
Confidence 432100 0000 0000112322222211000 0000000000 00000 000000 0000000000000 0001122
Q ss_pred EEEEeecccCcceEEEeccCCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHHccccccccccccCcchhhhccccCCCC
Q 008675 387 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPV 466 (557)
Q Consensus 387 ~~~~~~~~p~s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (557)
.+...+.+|.|||+|+|+++||++.|+|+++|+.++.|++++.++++++++++++++++.+...+
T Consensus 383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------- 447 (560)
T PRK02106 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE--------------- 447 (560)
T ss_pred EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---------------
Confidence 33345678999999999999999999999999999999999999999999999998877654322
Q ss_pred CCCCC-CCCChHHHHHHHHhccccccccccccccC----cccCCCCeEeccCCceEeeccCCCCCCCCChHHHHHHHHHH
Q 008675 467 NLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 541 (557)
Q Consensus 467 ~~~p~-~~~~~~~~~~~~~~~~~~~~H~~GT~rMG----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi~ala~r 541 (557)
..|. ...+++++++|++....+.+|++|||||| +|||++|||||++||||+|+||||+++++||++|+||||+|
T Consensus 448 -~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 448 -ISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred -cCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 2222 23678899999999988999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 008675 542 MGVRILSER 550 (557)
Q Consensus 542 ~a~~i~~~~ 550 (557)
+||+|+++.
T Consensus 527 aAd~I~~~~ 535 (560)
T PRK02106 527 AADLIRGRT 535 (560)
T ss_pred HHHHHhccC
Confidence 999887754
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.6e-73 Score=610.56 Aligned_cols=481 Identities=27% Similarity=0.371 Sum_probs=336.8
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCCCC-CCCccchhhhhh----ccCCCCCCCcCccccCCCcccccCcc
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG-NPNITNLGSFGA----ALSDLSSTSPSQRFISEDGVINSRAR 106 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~ 106 (557)
||||||||+||+++|.||+| + .||||||+|+.... .+....+..+.. ...+|.+.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 6 79999999975321 122222221111 11246666777777778888999999
Q ss_pred eecccccccCceeecCCcchhcc-------CCCChhhhhhhhhhhhhhhcc---------------CCCCCchhHHHHHH
Q 008675 107 VLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAF---------------EPPMRQWQSAVRDG 164 (557)
Q Consensus 107 ~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~ 164 (557)
+|||+|.+|+|.|.|+++.+|+. .+|+|++++|||+++|..... .+...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999976543 479999999999999976531 01123445778889
Q ss_pred HHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHH-hhhhc-CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 008675 165 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 242 (557)
Q Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~ 242 (557)
++++|++...........++......| .+|.|+++.. |++.+ +++|++|+++++|+||+++++ +|+||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 999998754322111111222111222 4788888765 77644 588999999999999999854 999999986
Q ss_pred CCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecCCccCCcCCCCCCceEEeeCCCcccchh
Q 008675 243 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 314 (557)
Q Consensus 243 ~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~p~VG~nl~dH~~~~~~~~~~~~~~~~~ 314 (557)
. +...++. ++|+||||||+++||+|||+|| ++||+++.++|+||+|||||+...+.+.++.+.....
T Consensus 235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 3 4444443 5899999999999999999999 8999999999999999999999888877665422100
Q ss_pred -HHHhh-ccchhhhhhhccCCcccCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccceEEEEee
Q 008675 315 -IQVVG-ITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKV 392 (557)
Q Consensus 315 -~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (557)
...+. ......|.....+...... . ...+++..... . . .+.. ...+...... .............+....
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~-~~~~~~~~~~~-~-~-~p~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNH--F-EGGGFVRSNDD-V-D-YPNI-QYHFLPVAIR-YDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccc--c-ceeEEEecCCC-C-C-CCCe-EEEEEeeeec-cCCCCCCCCCcEEEEEee
Confidence 00000 0000122221122111000 0 00000000000 0 0 0000 0000000000 000000001112333456
Q ss_pred cccCcceEEEeccCCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHHccccccccccccCcchhhhccccCCCCCCCC-C
Q 008675 393 MGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLP-R 471 (557)
Q Consensus 393 ~~p~s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 471 (557)
+.|.|||+|+|+++||++.|.|+++|+.++.|++.+.++++++++++++.+++.+...+ ..| .
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~ 445 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGP 445 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCC
Confidence 78999999999999999999999999999999999999999999999988776654322 122 2
Q ss_pred CCCChHHHHHHHHhccccccccccccccC------cccCCCCeEeccCCceEeeccCCCCCCCCChHHHHHHHHHHHHHH
Q 008675 472 HSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 545 (557)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~H~~GT~rMG------~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi~ala~r~a~~ 545 (557)
...+++++++|+|....+.+|++|||||| +|||++|||||++|||||||||||++|++||++|+||||||+||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999 499999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 008675 546 ILSE 549 (557)
Q Consensus 546 i~~~ 549 (557)
|+++
T Consensus 526 I~~~ 529 (532)
T TIGR01810 526 IRGK 529 (532)
T ss_pred Hhcc
Confidence 8754
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-67 Score=557.41 Aligned_cols=482 Identities=27% Similarity=0.361 Sum_probs=348.3
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCCccchhhhhhcc----CCCCCCCcCccccCCCcccc
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVIN 102 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 102 (557)
.+..+|||||||||.+||++|.+|++ |.+|||||+|+.... +.+..+..+.... .+|.+.+.++.+..++.+.+
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~ 81 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRR-PLIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAW 81 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCc-cceecchhHhhhccCcccCCccccCcccCCCCccccc
Confidence 45678999999999999999999999 999999999975322 1223333333322 25778888888888899999
Q ss_pred cCcceecccccccCceeecCCcchhcc-------CCCChhhhhhhhhhhhhhhcc--------CCC-----------CCc
Q 008675 103 SRARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAF--------EPP-----------MRQ 156 (557)
Q Consensus 103 ~~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~e~~~~~--------~~~-----------~~~ 156 (557)
++|++|||+|++|+|.|.|+.+.+|+. .+|+|++++|||+++|+.... +.. ..+
T Consensus 82 ~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~ 161 (542)
T COG2303 82 PRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNP 161 (542)
T ss_pred cccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchH
Confidence 999999999999999999999987743 459999999999999975443 110 123
Q ss_pred hhHHHHHHHHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHH-hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCe
Q 008675 157 WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPV 234 (557)
Q Consensus 157 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~ 234 (557)
....+.++..++|++....+.-....|+...+..+ .+|.|+++.. +++ ..+++|++|++++.|++|+++++ +
T Consensus 162 ~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r 235 (542)
T COG2303 162 IARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----R 235 (542)
T ss_pred HHHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----e
Confidence 45667777788898765433222222222222222 3788888765 776 57899999999999999999998 9
Q ss_pred EEEEEEEeCCCC-eeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecCCccCCcCCCCCCceEEee
Q 008675 235 AHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVP 305 (557)
Q Consensus 235 ~~gV~~~~~~g~-~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~p~VG~nl~dH~~~~~~~~ 305 (557)
++||++...++. ..... ++++||||||+|+||+|||+|| +.++.++.++|+||+|||||....+.+.
T Consensus 236 ~~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~ 311 (542)
T COG2303 236 AVGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFE 311 (542)
T ss_pred eEEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhhee
Confidence 999999864432 23333 6899999999999999999999 6899999999999999999999888776
Q ss_pred CCCcccchhHHHhhccch--hhhhhhccCCcccCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHhhhccC--CCC
Q 008675 306 SPVPVEVSLIQVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL--DDP 381 (557)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 381 (557)
.+.+.............. ..|.....|.... .....+ | ....+....++ ++..+...... ...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~g-f-------~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 378 (542)
T COG2303 312 ATEPTNDSVLSLFSKLGIGADRYLLTRDGPGAT----NHFEGG-F-------VRSGPAGEYPD-GQYHFAPLPLAIRAAG 378 (542)
T ss_pred ccCccccccccccccccccceeEEeecCCCccc----cccccc-c-------cccCccccCCC-cccccccccccccccc
Confidence 665431111100000000 0121111221100 000001 1 01111111111 11111110000 011
Q ss_pred CccceEEEEeecccCcceEEEeccCCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHHccccccccccccCcchhhhccc
Q 008675 382 AFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMT 461 (557)
Q Consensus 382 ~~~~~~~~~~~~~p~s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (557)
.....++.....+|.|+|.|++++.|+...|.|+++|+.++.|++.+.++++..++++.+..+..+...+
T Consensus 379 ~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e---------- 448 (542)
T COG2303 379 AEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE---------- 448 (542)
T ss_pred cCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh----------
Confidence 1234456666789999999999999999999999999999999999999999999999976666655443
Q ss_pred cCCCCCCCC-CCCCChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCCceEeeccCCCCCCCCChHHHH
Q 008675 462 ASAPVNLLP-RHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATV 535 (557)
Q Consensus 462 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG-----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi 535 (557)
..| ....+++++..|++....+.+|++|||||| +|+|++|||||++||||+|||+||+++++||++||
T Consensus 449 ------~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti 522 (542)
T COG2303 449 ------LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTI 522 (542)
T ss_pred ------hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhH
Confidence 223 245677889999999999999999999999 35559999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008675 536 MMLGRYMGVRILSE 549 (557)
Q Consensus 536 ~ala~r~a~~i~~~ 549 (557)
+|||+|+||+|+++
T Consensus 523 ~ala~raA~~I~~~ 536 (542)
T COG2303 523 IALAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999873
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.7e-51 Score=427.73 Aligned_cols=464 Identities=18% Similarity=0.166 Sum_probs=278.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCC-------c--c-chhhhhh----ccCCCC------C----
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN-------I--T-NLGSFGA----ALSDLS------S---- 87 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~-------~--~-~~~~~~~----~~~~~~------~---- 87 (557)
|||||||+|++|+++|+.|++ |++|+|||+|........ + . ....+.. .++... +
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 999999999976542110 0 0 0011111 111000 0
Q ss_pred --CCcC----ccccC-C-----C---cc-cccCcceecccccccCceeecCCcchhc--cCCCC--hhhhhhhhhhhhhh
Q 008675 88 --TSPS----QRFIS-E-----D---GV-INSRARVLGGGSCLNAGFYTRAAPYYVR--EVGWD--ERLVNESYQWVEKV 147 (557)
Q Consensus 88 --~~~~----~~~~~-~-----~---~~-~~~~g~~lGG~s~~n~~~~~r~~~~~~~--~~gw~--~~~~~~~~~~~e~~ 147 (557)
..+. ...+. + + .+ ...+-+.+||+|.+|++.+.|+.++... ..+|+ +++++|||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 0000 00000 0 0 11 1345689999999999999999985311 14687 79999999999999
Q ss_pred hccCCCCC--ch-hHHHH-HHHHHc-CC-CCCCCCCcCCCCceeeeeeEECCCCccccHH-Hhhh-----hcCCCCcEEE
Q 008675 148 VAFEPPMR--QW-QSAVR-DGLVEV-GV-LPYNGFTYDHMYGTKIGGTIFDQNGQRHTAA-DLLE-----YANPSGLTLL 215 (557)
Q Consensus 148 ~~~~~~~~--~~-~~~~~-~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~n~~i~ 215 (557)
+++.+... +. ..... ...+++ |. ..... . ..|... .| ..+.+++.. ..++ .+.++|++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----P-lA~~~~--~c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL----P-LACHRR--TD-PTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccC----c-hhhhcc--CC-CccceecCCccchhhhhhhhccCCCEEEE
Confidence 88765321 11 11111 122222 22 11110 0 001110 01 123334332 2222 2247899999
Q ss_pred cCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhhcCC--Ccc--eeec--CC
Q 008675 216 LHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--NIT--VVLD--QP 288 (557)
Q Consensus 216 ~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg~~--gi~--~~~~--~p 288 (557)
+++.|++|++++++ ..+|++|++.+. +|+.+++. ||.||||||+|+||+|||+|+.. +.| +.+. ++
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~~g 305 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPLLP 305 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCCCC
Confidence 99999999998641 128999999986 57777775 78999999999999999999932 233 4444 48
Q ss_pred ccCCcCCCCCCceEEeeCCCcccchhHHHhhccchhhhhhhccCCc--ccCCCCCCCCcccccccccccccCCCCCCCHH
Q 008675 289 LVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPE 366 (557)
Q Consensus 289 ~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (557)
.||||||||+...+.+.++.+....+........ .|........ +... .....+.....+ ...... ....+..
T Consensus 306 ~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~-~~~~w~~ 380 (544)
T TIGR02462 306 SLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLD--WWKEKVANHMMKHPED-PLPIPFRDPEPQ-VTTPFT-EEHPWHT 380 (544)
T ss_pred CCCcchhcCCCccEEEEecchhhhhccCCccccc--cccccchhhhccccCC-cccccccccCcc-cccccc-cccccch
Confidence 9999999999887776665442111100000000 0100000000 0000 000000000000 000000 0000000
Q ss_pred HH-HHHHh--hh-ccCCC-CCccceEEEEeecccCcceEEEecc--CCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHH
Q 008675 367 AI-AEAIE--NM-KALDD-PAFRGGFILEKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKII 439 (557)
Q Consensus 367 ~~-~~~~~--~~-~~~~~-~~~~~~~~~~~~~~p~s~g~V~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~ 439 (557)
.+ +..+. .. +.... .......+.+.+ |..+++|+|++ +|.+|.|++++.|..+++|++.+..+++.+.+++
T Consensus 381 ~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~ 458 (544)
T TIGR02462 381 QIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVA 458 (544)
T ss_pred hhhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 01 11110 00 00000 112233445555 66678899975 6999999999999999999999999999999998
Q ss_pred ccccccccccccCcchhhhccccCCCCCCCCCCCCChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCC
Q 008675 440 ESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDA 514 (557)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG-----~VVD~~~rV~g~~n 514 (557)
+.++..... . .+ .+ .....++|++|||||| +|||++|||||++|
T Consensus 459 ~~~G~~~~~--~-----------------~~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~N 507 (544)
T TIGR02462 459 AKIGGYLPG--S-----------------LP----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKN 507 (544)
T ss_pred HHcCCCccc--c-----------------cc----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCC
Confidence 877542111 0 00 00 0124578999999999 79999999999999
Q ss_pred ceEeeccCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 008675 515 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 549 (557)
Q Consensus 515 L~V~DaSv~P~~~~~np~lTi~ala~r~a~~i~~~ 549 (557)
|||+|+|+||+.+++|||+|+||+|+|+|++|+++
T Consensus 508 L~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 508 LYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred eEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=5.2e-43 Score=348.95 Aligned_cols=257 Identities=34% Similarity=0.498 Sum_probs=177.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCCCCCCCccchhhhhhcc---CCCCCCCcCccccCCCcccccCcce
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSRARV 107 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 107 (557)
|||||||||++|+++|.+|++ + .+|||||+|+...... ........... .++.+.+.++....++...+.+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 7999999998765433 11111111111 1233444455566777788889999
Q ss_pred ecccccccCceeecCCcchhcc-------CCCChhhhhhhhhhhhhhh-------------cc---CCCCCchhHHHHHH
Q 008675 108 LGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVV-------------AF---EPPMRQWQSAVRDG 164 (557)
Q Consensus 108 lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~e~~~-------------~~---~~~~~~~~~~~~~~ 164 (557)
|||+|.+|+|++.|+++.+|+. .+|+|+++++||+++|... .+ .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999976543 3599999999999999332 21 12234456788899
Q ss_pred HHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHH-hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 008675 165 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 242 (557)
Q Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~ 242 (557)
++++|++....+......+....+. .+.+|.|+++.. ||+ ..+++|++|+++++|+||++++++ .+|+||++.+
T Consensus 160 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~~ 235 (296)
T PF00732_consen 160 AEELGIPVPQDFNGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYVD 235 (296)
T ss_dssp HHHTTHHBCSCTTSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEEE
T ss_pred HHHcCCccccccccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeeee
Confidence 9999987222211111122111111 136788887754 776 556779999999999999997332 3999999998
Q ss_pred CCCC-eeEEeeecCCceEEEEccCCcCchHHHHhhc--------CCCcceeecCCccCCcCCCCCC
Q 008675 243 ATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 299 (557)
Q Consensus 243 ~~g~-~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg--------~~gi~~~~~~p~VG~nl~dH~~ 299 (557)
.++. ..++. ++|+||||||+|+||+|||+|| +.||+++.++| ||+||||||.
T Consensus 236 ~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~ 296 (296)
T PF00732_consen 236 NDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV 296 (296)
T ss_dssp TTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred cCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence 7776 33333 5899999999999999999999 78999999999 9999999983
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=8.6e-34 Score=251.04 Aligned_cols=139 Identities=34% Similarity=0.586 Sum_probs=110.2
Q ss_pred cCcceEEEeccCCCCCCCeEecCCCCCHHHHHHHHHHHHHHHHHHccccccccccccCcchhhhccccCCCCCCCCCCCC
Q 008675 395 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSN 474 (557)
Q Consensus 395 p~s~g~V~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 474 (557)
|.|||+|+|+++|+++.|.|+++|+.+++|++.+.++++.+++++++. ++.+......+ .. .+. .......
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~------~~-~~~-~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLP------GP-SPF-CPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEES------CG-CSC-CGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccc------cc-ccc-ccccccc
Confidence 789999999999999999999999999999999999999999999998 65554322100 00 000 0012346
Q ss_pred ChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCCceEeeccCCCCCCCCChHHHHHHHHHHH
Q 008675 475 ASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 542 (557)
Q Consensus 475 ~~~~~~~~~~~~~~~~~H~~GT~rMG-----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~np~lTi~ala~r~ 542 (557)
+++++++|+++...+.+|++|||||| +|||++|||||++||||+||||||+.+++||++|+||||+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 77899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.46 E-value=8.7e-13 Score=139.89 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=50.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhh
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~S 276 (557)
+...+++.|++++++++|++|+.+++ +++||++.+.+++...+. +|.||||+|++.+++.|+..
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 44456678999999999999998654 899999864456555554 68999999999998777765
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=2.1e-12 Score=138.61 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=47.1
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
..+++.|++|++++.|++|+.+++ +|+||.+.+ +|+...+. ++|.||||+|+++...=|+
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHH
Confidence 345668999999999999997644 999998875 56555565 6689999999999765443
No 11
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.42 E-value=2.9e-12 Score=136.63 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=47.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
+...+++.|++|++++.|++|+.+++ +++||++...+++..++. ++.||||+|++....=|+
T Consensus 196 L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 196 LLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SKAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cCeEEEeCCCcccCHHHH
Confidence 34455667999999999999987654 899999875455555554 799999999988764433
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=2.5e-12 Score=138.87 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=47.6
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
.++..|++|++++.|++|+.|+++ +|+||.+.. +|+..++. +++.||||+|+++...=|+
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHH
Confidence 556789999999999999998654 999999874 67666665 4567999999999744333
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=138.17 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=48.3
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
..+++.|++|+++++|++|+.+++ +|+||++.. +|+..++. +++.||||+|++....=|+
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHH
Confidence 456678999999999999998765 999999874 56666665 4578999999999865444
No 14
>PRK07121 hypothetical protein; Validated
Probab=99.40 E-value=2.8e-12 Score=136.73 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=48.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHh
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~ 275 (557)
+...+++.|++|+++++|++|+.++++ +++||++.+ +++..++. ++|.||||+|++....-|++
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHH
Confidence 334566789999999999999987654 899999874 55555665 34999999999886554443
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.39 E-value=3.4e-12 Score=133.62 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=45.0
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCchHHHHh
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~ 275 (557)
..+++.+++|++++.|++|+.+++ +|+||++.+ .+|+..+++ ++.||||+|++.. .++..
T Consensus 149 ~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 149 KAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG-HHHHH
T ss_pred HHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc-ccccc
Confidence 455667899999999999999876 999999995 357667775 6799999999999 55443
No 16
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=5.9e-12 Score=123.57 Aligned_cols=169 Identities=22% Similarity=0.330 Sum_probs=99.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCCccchhhhhhccCCCCCCCcCccccCCCcccccCccee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVL 108 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 108 (557)
++.+||||||+|+||+++|..+++ |.+|+|||+++.....- ..-
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKi-----------------------------------l~s 45 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI-----------------------------------LMS 45 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccccee-----------------------------------Eec
Confidence 357999999999999999999999 99999999998653110 011
Q ss_pred cccccccCceeecCCcchhccCCCChhhhhhhhhhhhhhhccCCCCCchhHHHHHHHHHcCCCCCCCCCcCCCCceeeee
Q 008675 109 GGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGG 188 (557)
Q Consensus 109 GG~s~~n~~~~~r~~~~~~~~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 188 (557)
||+.+ |-....- ...+..+.+=...-+.+.+.+ +. .+.+++.++.+|+.-.. ...+
T Consensus 46 GgGrC-N~Tn~~~-~~~~ls~~p~~~~fl~sal~~------ft------~~d~i~~~e~~Gi~~~e----------~~~G 101 (408)
T COG2081 46 GGGRC-NFTNSEA-PDEFLSRNPGNGHFLKSALAR------FT------PEDFIDWVEGLGIALKE----------EDLG 101 (408)
T ss_pred CCCCc-ccccccc-HHHHHHhCCCcchHHHHHHHh------CC------HHHHHHHHHhcCCeeEE----------ccCc
Confidence 22221 1111100 111111100000111111111 11 24567777788875321 1112
Q ss_pred eEECCCCccccHHH-hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCc
Q 008675 189 TIFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 267 (557)
Q Consensus 189 ~~~~~~g~r~~~~~-~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~ 267 (557)
..|+...+..+... ++..+++.|++|+++++|.+|..++. +..+..++|+ ++. ++.+|||+|+.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~ 166 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGK 166 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCc
Confidence 34444333333333 55677889999999999999998764 4455545675 343 79999999998
Q ss_pred CchHH
Q 008675 268 GSPQL 272 (557)
Q Consensus 268 ~sp~l 272 (557)
.-|++
T Consensus 167 S~P~l 171 (408)
T COG2081 167 SWPKL 171 (408)
T ss_pred CCCCC
Confidence 88864
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.37 E-value=7.1e-12 Score=133.86 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.7
Q ss_pred cCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 207 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 207 ~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
.++.|++|+++++|++|+.+++ +|+||++.. +|+..++. ++|.||||||+++..+-|+
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHH
Confidence 3456999999999999998754 999999864 57666666 4568999999997654443
No 18
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.36 E-value=9.8e-12 Score=129.79 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=42.8
Q ss_pred hhhhc-CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~-~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++..+ ++.|++|++++.|++|+.+++ +++||.+.+ +++..++. +|.||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 44433 456999999999999998765 899988764 45544554 6899999999764
No 19
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.35 E-value=1.8e-11 Score=131.91 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..++||||||+|.||+++|..+++ |.+|+||||+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999 99999999997
No 20
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.32 E-value=1.2e-11 Score=130.19 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=47.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lL 273 (557)
+...+++.|++|++++.|++|+.++++ +++||++.+.+++...+ ++|.||||+|++....-|
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHH
Confidence 344566789999999999999997654 89999998655543333 479999999998874433
No 21
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.32 E-value=2.9e-12 Score=131.28 Aligned_cols=167 Identities=24% Similarity=0.338 Sum_probs=79.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCCccchhhhhhccCCCCCCCcCccccCCCcccccCcceeccc
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGG 111 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 111 (557)
|||||||+|+||+++|..|++ |.+|+||||+...... + ..-|++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkK------------------------------i-----l~tG~G 45 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKK------------------------------I-----LITGNG 45 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH------------------------------H-----HHCGGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccc------------------------------e-----eecCCC
Confidence 899999999999999999999 9999999999764210 0 011111
Q ss_pred ccccCceeecCCcchhc-cCCCChhhhhhhhhhhhhhhccCCCCCchhHHHHHHHHHcCCCCCCCCCcCCCCceeeeeeE
Q 008675 112 SCLNAGFYTRAAPYYVR-EVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI 190 (557)
Q Consensus 112 s~~n~~~~~r~~~~~~~-~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (557)
-.|-.. ...+...|. ..+-..+-+.+.+... ..+.+.+-+.+.|++... ...+.+
T Consensus 46 -rCN~tn-~~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~ 101 (409)
T PF03486_consen 46 -RCNLTN-LNIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRV 101 (409)
T ss_dssp -T-EEEE-TTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEE
T ss_pred -Cccccc-cccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEE
Confidence 111000 011111110 0000001111111111 124466677778875210 011234
Q ss_pred ECCCCccccHHH-hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 191 FDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 191 ~~~~g~r~~~~~-~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++...+..+... ++..+++.|++|+++++|+.|+.+++ .+..|+.. +++ .+. ++.||||+|+...
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~--~~~-----a~~vILAtGG~S~ 167 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGG--EYE-----ADAVILATGGKSY 167 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTE--EEE-----ESEEEE----SSS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Ccc--ccc-----CCEEEEecCCCCc
Confidence 444333333333 44566778999999999999999887 66777762 333 233 6999999999888
Q ss_pred hHH
Q 008675 270 PQL 272 (557)
Q Consensus 270 p~l 272 (557)
|++
T Consensus 168 p~~ 170 (409)
T PF03486_consen 168 PKT 170 (409)
T ss_dssp GGG
T ss_pred ccc
Confidence 873
No 22
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.8e-11 Score=131.75 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 334455689999999999999988763 699998876 567655664 6999999999874
No 23
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=6.8e-11 Score=127.42 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=49.1
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhh
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~S 276 (557)
..+++.|++|++++.|++|+.+++ +|+||++.. +|+..++. +++.||||+|++.+.+-|+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 345678999999999999998755 999999874 56666665 446799999999997666554
No 24
>PRK12839 hypothetical protein; Provisional
Probab=99.27 E-value=7e-11 Score=127.28 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
++..+++.|++|++++.|++|+.++++ +|+||++.+.+|+ .++. ++|.||||+|++....-|+
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 344556779999999999999987544 9999998865554 3444 5789999999999854443
No 25
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.26 E-value=8.2e-11 Score=127.88 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=45.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+...+. +|.||||+|+++.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRFR-----AHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEEE-----CCcEEEeCCCCcc
Confidence 334556689999999999999985443 999999865 356655554 7899999999875
No 26
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.25 E-value=5e-11 Score=129.56 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=46.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCch
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSP 270 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp 270 (557)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+. +|+...+. +|.||||+|+++..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCccc
Confidence 334455679999999999999987443 9999998763 56655654 79999999998853
No 27
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=5.9e-11 Score=128.40 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=45.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++..+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 344556689999999999999987444 999999865 356655664 7999999999875
No 28
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=6.5e-11 Score=127.72 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcC
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+. +|+...+. +|.||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFFK-----TKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----eCeEEECCCccc
Confidence 33445557999999999999999765 9999999864 34444554 799999999987
No 29
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.24 E-value=1.6e-10 Score=125.18 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=47.2
Q ss_pred hhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 204 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 204 l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
...+++.|++|++++.|++|+.+++ +++||.+.+ ++...++. ++|.||||+|++....-++
T Consensus 224 ~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 224 LKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 3456678999999999999998754 999999875 34444554 3489999999998765553
No 30
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=8.1e-11 Score=128.32 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=44.3
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
.+++.|++|++++.|++|+.+++ +|+||.+.+. +|....+. +|.||||+|+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERHT-----ADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCccc
Confidence 45568999999999999998765 9999999864 46555554 7899999999885
No 31
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.24 E-value=1.2e-10 Score=125.17 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=48.5
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
..+.+.|++++++++|+.|..+++ +++||++.+. +|+..++. ++.||+|||+ ++.+|+...+
T Consensus 157 ~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~-wa~~l~~~~g 219 (546)
T PRK11101 157 LDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVVNAAGI-WGQHIAEYAD 219 (546)
T ss_pred HHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEEECCCh-hHHHHHHhcC
Confidence 456678999999999999988765 8999998763 35445565 7999999996 6788876555
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.23 E-value=2.6e-10 Score=123.55 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHh
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~ 275 (557)
..+++.|++|++++.|++|+.+++ +|+||++.+.++ ...+. +++.||||+|++....-++.
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence 345678999999999999998765 999999886333 34454 45789999999986655543
No 33
>PLN02815 L-aspartate oxidase
Probab=99.23 E-value=5.2e-11 Score=128.24 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+.+|++|++++.+++|+.++++ +..+|+||.+.+. +|....+. +|.||||+|+++.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 3469999999999999986432 1114999998753 56555554 7999999999874
No 34
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.23 E-value=1.8e-10 Score=123.70 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=42.2
Q ss_pred CCCCcEEEcCcEEEEEEEecCC-CCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRIKG-KARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~-~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+.+|++|++++.|++|+.++.. ..+.+|+||.+.+. +|+...+. +|.||||+|++..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIR-----AKFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEe-----cCeEEECCCCCCC
Confidence 4579999999999999986410 00029999998763 46555554 7999999999874
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.23 E-value=2.2e-10 Score=132.97 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=45.3
Q ss_pred CCCcEEEcCcEEEEEEEecCC----CCCCeEEEEEEEeC---CCCeeEEeeecCCceEEEEccCCcCchH
Q 008675 209 PSGLTLLLHASVHKVLFRIKG----KARPVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (557)
Q Consensus 209 ~~n~~i~~~~~V~~i~~~~~~----~~~~~~~gV~~~~~---~g~~~~v~~~~~aa~~VIlaaGa~~sp~ 271 (557)
+.|++|++++.|++|+.++++ +...+|+||++.+. +|+...+. +|.||||+|+++...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence 469999999999999997521 01238999999875 67666664 699999999999854
No 36
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.22 E-value=5.5e-11 Score=127.52 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=41.3
Q ss_pred CCCCcEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++.|++|++++.|++|+.++ ++ +|+||.+.+ +|....+. +|.||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i~-----AkaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWLR-----AGAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEEE-----cCEEEEcCCCCcc
Confidence 35699999999999999874 23 899998874 56554454 7999999999753
No 37
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.1e-10 Score=126.71 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=46.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++..+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 344556679999999999999987643 999999865 356655654 6899999999885
No 38
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=9.7e-11 Score=126.85 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=44.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+++.|++|++++.|++|+.+++ +|.||...+ .+|+...+. +|.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 44455677999999999999998765 999998754 355544554 7999999999864
No 39
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=3.3e-10 Score=122.72 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=48.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
++..+++.|++|++++.|++|+.+++ +|+||.+.+ +|+.+++. +++.||||+|++....=|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHH
Confidence 34456678999999999999998755 999999874 56555555 4689999999999864444
No 40
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.4e-10 Score=125.55 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 210 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 210 ~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
.+++++.++.+++|+.++++ +|+||.+.+. +|+...+ .+|.||||+|++..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 35899999999999987543 9999999874 3444444 37999999999885
No 41
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.21 E-value=1.9e-10 Score=122.66 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=41.8
Q ss_pred CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 210 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 210 ~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
.|++|++++.|++|+.+++ ++.||.+.+.+|+...+. +|.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 6999999999999988765 999999887556655554 7999999999875
No 42
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.20 E-value=1.6e-10 Score=124.21 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
..+.++||||||+|.||+.+|.++++ |.+|+||||+...
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 34568999999999999999999999 9999999999753
No 43
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=2.3e-10 Score=124.00 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=44.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++..+.+.|++++.++.|++|+.++++ +|+||.+.+. +|+...+. +|.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYILE-----AKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence 344456689999999999999987543 8999998753 45544553 7999999999874
No 44
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=4.7e-10 Score=121.37 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+.+|+++++++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 346899999999999998765 999998865 356555554 7999999999774
No 45
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.17 E-value=1.6e-10 Score=126.28 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=45.2
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
..+.+.|++|+.++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|+++.
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 345678999999999999998765 999999986 467665554 7999999999874
No 46
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.16 E-value=4.8e-10 Score=119.25 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=43.0
Q ss_pred hhhhcCC-CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~-~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+++ +|++|++++.|++|+.+++ +++||.+.+. +....+. ++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i~-----A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETCH-----ADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEEE-----cCEEEECCCcccC
Confidence 3344444 7999999999999998755 8999998764 4444443 7999999999875
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.14 E-value=7e-10 Score=119.76 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+.+|++++.++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 346899999999999998765 999998865 356655554 7999999999774
No 48
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=3.3e-10 Score=123.47 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=39.4
Q ss_pred cEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCch
Q 008675 212 LTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSP 270 (557)
Q Consensus 212 ~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~sp 270 (557)
++|+.++.|++|+.+++ +++||.+.+ .+|+...+. +|.||||+|+++..
T Consensus 166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~~ 215 (626)
T PRK07803 166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGKS 215 (626)
T ss_pred eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccCC
Confidence 99999999999998765 899998765 356555554 78999999997643
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.13 E-value=4.9e-10 Score=121.63 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=44.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
++..+.+.|+++++++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 34445556999999999999998765 999999875 356555554 7999999999864
No 50
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=111.00 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=45.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
+...+...|++|..|++|++|..+++ .++-+.. .+|++. ++ +|.||.|||. .+-+|+..+|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~--~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT--SNGEET-LE-----AKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--cCCcEE-EE-----eeEEEECCch-hHHHHHHHhC
Confidence 55555666999999999999998876 2222222 356554 44 7999999995 8889999998
No 51
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=5.1e-10 Score=121.38 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+..|++++.++.|++|+.+++ +++||.+.+. +|+...+. +|.||||+|++..
T Consensus 149 ~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhcc
Confidence 347999999999999998765 9999988753 55544554 7999999999863
No 52
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=5.1e-10 Score=121.34 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=44.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecC---CCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIK---GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~---~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+.+.|+++++++.|++|+.+++ + +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 33456678999999999999998752 3 899998864 345544554 7999999999874
No 53
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.09 E-value=7.5e-11 Score=120.52 Aligned_cols=58 Identities=28% Similarity=0.321 Sum_probs=43.5
Q ss_pred hhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 204 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 204 l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
...+++.|++|+++++|++|..+++ +++||++. +|+ +. ++.||+|+|+ +|++|+..++
T Consensus 154 ~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 154 AAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred HHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 3455667999999999999999987 88888875 453 33 6999999996 7888887665
No 54
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.08 E-value=8e-10 Score=120.29 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=49.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
++..+.+.|++++.+++|++|..++ ++ ++++|++.+. +++..++. ++.||+|||+ ++.+|+...+
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCH-hHHHHHHhcc
Confidence 3456677899999999999998874 33 8899998763 45544554 7999999997 6788877664
No 55
>PRK08275 putative oxidoreductase; Provisional
Probab=99.06 E-value=1.3e-09 Score=117.60 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=43.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcC
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
+...+++.|++|+.++.|++|+.++++ +++||.+.+ .+|+...+. +|.||||+|++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVIR-----AKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEEE-----CCEEEECCCCcc
Confidence 334456689999999999999987443 899998865 356544554 789999999975
No 56
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.06 E-value=2.2e-10 Score=103.69 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=30.3
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
..+|||+|||+|++|+++|+.|++ |+||+|+|+...
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 357999999999999999999999 999999999854
No 57
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.05 E-value=1.8e-09 Score=115.24 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=42.2
Q ss_pred hhhhcC-CCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYAN-PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~-~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+. +.|++++.++.|++|+.+++ +|+||.+.+ .+...++. +|.||||+|+++.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i~-----Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVLP-----ARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEEE-----CCEEEEcCCCCcC
Confidence 334443 45999999999999987754 999999875 34444443 7899999999864
No 58
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.05 E-value=1e-09 Score=118.97 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCc
Q 008675 209 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 209 ~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
..|++|++++.|++|+.++++ +|+||.+.+. +|+...+. +|.||||+|+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 468999999999999987654 9999999864 46555554 7899999999864
No 59
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.05 E-value=8.5e-10 Score=106.59 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
...+|||+|||+|++|+++|..|++ |++|+|||+...
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3457999999999999999999999 999999999754
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.01 E-value=4.6e-09 Score=110.61 Aligned_cols=38 Identities=37% Similarity=0.618 Sum_probs=33.4
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~ 65 (557)
..+..|||||||||..|+++|+.|++ + .+|+||||...
T Consensus 41 ~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred ccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 44567999999999999999999998 3 69999999863
No 61
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.01 E-value=4.2e-09 Score=114.53 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=41.1
Q ss_pred hhcCC-CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcC
Q 008675 205 EYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 205 ~~~~~-~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
..+++ .|++++.++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|++.
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 34444 4699999999999998765 899998754 345544554 799999999976
No 62
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.01 E-value=2.5e-09 Score=114.16 Aligned_cols=39 Identities=33% Similarity=0.536 Sum_probs=35.5
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.|++.|||||||||+.|+.+|+.|++ |+||+|||+++..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 2 TMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45678999999999999999999999 9999999998654
No 63
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.00 E-value=2.4e-09 Score=96.32 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+-||||||+|++|+++|++||+ |+||+|+||.-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 35799999999999999999999 99999999974
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.99 E-value=2.1e-09 Score=103.51 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
..+|||+|||+|++|+++|+.|++ |.+|+||||+..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 357999999999999999999999 999999999864
No 65
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.99 E-value=3.1e-09 Score=114.63 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=40.9
Q ss_pred CCCCcEEEcCcEEEEEEEecC--CCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcC
Q 008675 208 NPSGLTLLLHASVHKVLFRIK--GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~--~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
...+++|+.++.|++|+.+++ + +|+||.+.+ .+|+...+. +|.||||+|++.
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 345679999999999998752 3 999999865 356555554 799999999985
No 66
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.97 E-value=1.5e-08 Score=105.68 Aligned_cols=46 Identities=33% Similarity=0.512 Sum_probs=37.5
Q ss_pred cccccccCCCCCCccEEEECCCcchHHHHHhhhc--C-CeEEEEeeCCC
Q 008675 20 FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGS 65 (557)
Q Consensus 20 ~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvLE~G~~ 65 (557)
|...+........|||||||+|..|+.+|+.|++ | .+|+||||+..
T Consensus 18 ~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 18 WKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 3444444555678999999999999999999997 7 49999999853
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.97 E-value=2.3e-08 Score=105.71 Aligned_cols=64 Identities=30% Similarity=0.388 Sum_probs=43.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
++..+++.|++|+++++|++|..++++ .+ .|.+.+ ..|+..++. ++.||+|||+ ++.+|+..+|
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSG 248 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcC
Confidence 445556679999999999999875542 22 233332 234333454 7999999997 6778887776
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.96 E-value=6e-09 Score=108.79 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+||||||||..|+.+|++|++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999974
No 69
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=6.9e-09 Score=117.95 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=41.3
Q ss_pred CCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 209 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 209 ~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
..++++.+++.+++|+.+++ +|+||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 35899999999999998755 999999875 357665654 7999999999863
No 70
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.93 E-value=4.1e-09 Score=112.15 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcC-----chHHHHhhc-----
Q 008675 209 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG-----SPQLLMLSG----- 277 (557)
Q Consensus 209 ~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~-----sp~lLl~Sg----- 277 (557)
..+++++.+..|++|+.++++ .+.||...+. +|+...++ +|.||+|+|+.+ |+-.....|
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g~~~~~~t~~~~~tGdG~~m 221 (562)
T COG1053 151 FSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAGRLYPYTTNAHIGTGDGVAM 221 (562)
T ss_pred hhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCceEEEeccCCccccCCcHHHH
Confidence 367899999999999998773 5899988864 46555554 699999999998 444444433
Q ss_pred --CCCcceeecCCccCCcCCCCCCc
Q 008675 278 --AHNITVVLDQPLVGQGMSDNPMN 300 (557)
Q Consensus 278 --~~gi~~~~~~p~VG~nl~dH~~~ 300 (557)
+.|.++ . ..+..|-||..
T Consensus 222 a~~aGa~l-~----dme~~Q~hpt~ 241 (562)
T COG1053 222 AYRAGAPL-I----DMEFVQFHPTG 241 (562)
T ss_pred HHhcCCcc-c----CCCccccccce
Confidence 444442 1 34466777754
No 71
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.93 E-value=1e-08 Score=109.47 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=35.5
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.|..+|||||||||+.|+.+|+.|++ |.+|+|||+++..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 35677999999999999999999999 9999999999654
No 72
>PLN02661 Putative thiazole synthesis
Probab=98.93 E-value=7.4e-09 Score=102.45 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~ 65 (557)
..++||+|||+|++|+++|+.|++ |.+|+|||++..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 346899999999999999999996 799999999753
No 73
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.91 E-value=2e-08 Score=104.24 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=49.7
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
.+...|.++++.++|++++.+++ +.||++.|. +|++++++ ++.||-|||. ++-+++...+
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhc
Confidence 45668999999999999998753 889999985 47777776 7999999996 7888888775
No 74
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.90 E-value=1.6e-08 Score=104.31 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
..|||||||+|..|+++|+.|++ |.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 46999999999999999999999 999999999864
No 75
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.90 E-value=7.3e-09 Score=108.74 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=44.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ .++. +|.||||+|++...+-|+
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHH
Confidence 4445677899999999999999873 33 899988742 22 3443 689999999998866544
No 76
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.89 E-value=2.7e-08 Score=103.28 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=39.1
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCCc
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNI 72 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~~ 72 (557)
|+++|||||||+|.+||++|..|++ |+|||+||+.+...+....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 5678999999999999999999999 9999999999887654443
No 77
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.88 E-value=2.6e-08 Score=100.54 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=43.9
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcC
Q 008675 203 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 203 ~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
++. ..+++|++|+.++.+.+|+.+++. .+.||.+.+.+++..++. ++.||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~~-----a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTFR-----AKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEEe-----cCeEEEecCCCc
Confidence 444 445699999999999999999873 556999986544345554 799999999864
No 78
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.86 E-value=4.1e-08 Score=103.86 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
+..|||||||||..|+++|+.|++ |.+|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 456999999999999999999998 689999999864
No 79
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.85 E-value=1.2e-08 Score=98.97 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
.+..+|+++..++ |.+|+.+++ .+.||.+.++.|++.+.. |.--|+|-|.+..
T Consensus 157 a~slpNV~~eeGt-V~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEGT-VKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeeee-HHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHH
Confidence 4567899986554 888888777 999999998888776665 7899999997754
No 80
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.85 E-value=2e-08 Score=106.16 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+||||||+|.||+.+|.+|++ |.+|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999 99999999974
No 81
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.84 E-value=3.7e-08 Score=101.79 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=31.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999864
No 82
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.82 E-value=2.1e-08 Score=104.00 Aligned_cols=34 Identities=38% Similarity=0.747 Sum_probs=31.4
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
.|||||||||.+|+++|+.|++ |.+|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4899999999999999999997 799999999864
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=2.9e-08 Score=105.03 Aligned_cols=38 Identities=32% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
..+.++||||||+|.+|+.+|++|++ |.+|+|||++..
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 44567999999999999999999997 689999999854
No 84
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.80 E-value=2.5e-08 Score=104.35 Aligned_cols=36 Identities=44% Similarity=0.719 Sum_probs=33.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+.|||||||+|++|+++|+.|++ |.+|+||||+..+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999754
No 85
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.80 E-value=2.3e-08 Score=103.71 Aligned_cols=37 Identities=41% Similarity=0.701 Sum_probs=34.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
.+|||||||+|+||+++|++|++ |.+|+|||++..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 47999999999999999999999 99999999998764
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.79 E-value=1e-07 Score=100.11 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc---CCeEEEEeeC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERG 63 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G 63 (557)
.+..+||||||||.+|+++|+.|++ +.+|+||||-
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 4567899999999999999999998 6999999993
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.79 E-value=1.1e-07 Score=99.49 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||||||+|.+|+++|++|++ |.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 79999999999999999999 999999999853
No 88
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.78 E-value=4.1e-09 Score=110.14 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
.+.+.|++|++++.|..++.+++ ++++|++.+..| ..++. ++.||-|+|- ..|+-++|
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i~-----A~~~IDaTG~---g~l~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEIR-----AKVFIDATGD---GDLAALAG 156 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-ccccc-----cccccccccc---cccccccc
Confidence 44668999999999999999876 899999987655 55664 8999999993 57888888
No 89
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.74 E-value=4.1e-08 Score=93.91 Aligned_cols=40 Identities=35% Similarity=0.443 Sum_probs=36.7
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
.+...+|+||||+|.-|+.+|++|++ |.++|+||+-+.+.
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 46678999999999999999999999 99999999988764
No 90
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.74 E-value=7.4e-08 Score=102.22 Aligned_cols=35 Identities=40% Similarity=0.669 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+..|||||||||+||+.+|..||+ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 457999999999999999999999 99999999864
No 91
>PRK10015 oxidoreductase; Provisional
Probab=98.72 E-value=9.8e-08 Score=99.78 Aligned_cols=36 Identities=36% Similarity=0.665 Sum_probs=33.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
++|||||||+|+||+++|+.|++ |.+|+||||+..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 46999999999999999999999 9999999999754
No 92
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.68 E-value=4.6e-07 Score=95.39 Aligned_cols=63 Identities=19% Similarity=0.408 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...++..|++++++++|++|+++.++ ...+|+||++.. +|+..++.+. +++.||+++|++.+
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCcc
Confidence 334667789999999999999986221 224899999974 3444444332 78999999999764
No 93
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.66 E-value=9.1e-08 Score=98.31 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|||||||+|.+|+++|++|++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 799999999999999999999 999999999864
No 94
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.66 E-value=2e-07 Score=98.96 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=35.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
..|||||||||.+|+++|..||+ |++|+||||.....+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 57999999999999999999999 999999999877654
No 95
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.66 E-value=8.5e-07 Score=84.68 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=33.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
..++||||||+|.+|+++|.+|++ |++|+|||.-..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 457999999999999999999999 999999998654
No 96
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.64 E-value=9.9e-08 Score=93.46 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=48.5
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe----CCCCe-------eEEeeecCCceEEEEccCCcCc-
Q 008675 203 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD----ATGAK-------HRAYLKNGPKNEIIVSAGALGS- 269 (557)
Q Consensus 203 ~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~----~~g~~-------~~v~~~~~aa~~VIlaaGa~~s- 269 (557)
+|. .|+..|++|+.+..+..|++++++ .|.||...| ++|.. ..+. +|..|+|-|.-++
T Consensus 188 wLg~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~h-----ak~TifAEGc~G~L 258 (621)
T KOG2415|consen 188 WLGEKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEFH-----AKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCccccccccceec-----ceeEEEeccccchh
Confidence 554 778899999999999999999886 899998865 23421 2232 7889999887664
Q ss_pred -hHHHHhhc
Q 008675 270 -PQLLMLSG 277 (557)
Q Consensus 270 -p~lLl~Sg 277 (557)
-+++.+-.
T Consensus 259 skqi~kkf~ 267 (621)
T KOG2415|consen 259 SKQIIKKFD 267 (621)
T ss_pred HHHHHHHhC
Confidence 46665443
No 97
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.63 E-value=1.8e-07 Score=103.58 Aligned_cols=34 Identities=41% Similarity=0.526 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+||||||||.+|+++|+.|++ |.+|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999 999999999853
No 98
>PRK06185 hypothetical protein; Provisional
Probab=98.57 E-value=4.5e-07 Score=94.65 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+..+|||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4467999999999999999999999 999999999853
No 99
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.57 E-value=6.7e-07 Score=95.63 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=49.0
Q ss_pred EECCCCccccHHHhhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 190 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 190 ~~~~~g~r~~~~~~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
.++.+|...-...+...+++.|++|++++.|++|..+++ ++.+|++. +|+. +. ++.||+|+|...+
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~~-----ad~vV~a~~~~~~ 287 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--IY-----AKRIVSNATRWDT 287 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--EE-----cCEEEECCChHHH
Confidence 334445432222344566778999999999999998765 88899875 4643 33 6889999998665
Q ss_pred hHHHH
Q 008675 270 PQLLM 274 (557)
Q Consensus 270 p~lLl 274 (557)
-..|+
T Consensus 288 ~~~Ll 292 (493)
T TIGR02730 288 FGKLL 292 (493)
T ss_pred HHHhC
Confidence 54443
No 100
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.52 E-value=1.4e-06 Score=87.95 Aligned_cols=85 Identities=29% Similarity=0.426 Sum_probs=57.7
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCchHHHHhhcCCC
Q 008675 203 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN 280 (557)
Q Consensus 203 ~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg~~g 280 (557)
++. ..+++|+++.++++|++|...+++ ---|.+.+ .+|+..++. ++-|+|.||+ ++=.||++||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg--- 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG--- 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC---
Confidence 454 334569999999999999987762 22344443 246666665 8999999998 6788899898
Q ss_pred cceeecCCccCCcCCCCCCceEEeeCCC
Q 008675 281 ITVVLDQPLVGQGMSDNPMNAIFVPSPV 308 (557)
Q Consensus 281 i~~~~~~p~VG~nl~dH~~~~~~~~~~~ 308 (557)
|| =|+++..=|....++..+.
T Consensus 253 i~-------e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 253 IP-------EGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred Ch-------hhcccCCCcccceEEecCC
Confidence 22 2555555565555555443
No 101
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.52 E-value=7.4e-07 Score=92.38 Aligned_cols=31 Identities=52% Similarity=0.664 Sum_probs=28.8
Q ss_pred EEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 36 IIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 36 IIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
||||+|++|+++|.+|++ |.+|+||||.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 699999999999999999 9999999998654
No 102
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.52 E-value=1.7e-07 Score=87.68 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=34.7
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhh
Q 008675 203 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (557)
Q Consensus 203 ~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~S 276 (557)
|+. .+++.+++++++++|+++..+++ + --|.+ .++ .++. ++.||+|+|.+..|+++..-
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence 443 55666888999999999999876 3 22443 355 3343 69999999999999886533
No 103
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=6.3e-07 Score=83.41 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+++|||+|++|+++|+.|++ |.+|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 69999999999999999999 999999999964
No 104
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.51 E-value=8.2e-07 Score=84.38 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=42.6
Q ss_pred CcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCch
Q 008675 211 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 270 (557)
Q Consensus 211 n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp 270 (557)
-++|+++++|++|+.+++ +|.||++.|.+|+...+. .+.||+|+|+++-.
T Consensus 159 ~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYS 208 (477)
T ss_pred HHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcC
Confidence 489999999999996555 999999999888876654 68899999999863
No 105
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.51 E-value=9.2e-07 Score=92.91 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=35.5
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
.+....+|+|||+|++|+++|..|.+ |.+|+|+|++....
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG 46 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG 46 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 45557899999999999999999999 99999999987653
No 106
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=9.9e-08 Score=96.55 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCCccccHHHhh--h-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcC
Q 008675 193 QNGQRHTAADLL--E-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 193 ~~g~r~~~~~~l--~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
.+|...++..-+ . -|.+.|+++.-+.+|.+++.++++ ++.|++++|. .|++++|+ +|.||-|+|-+.
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs 287 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS 287 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence 466666664322 2 345789999999999999999885 8999999984 68888887 799999999764
Q ss_pred chHHHH
Q 008675 269 SPQLLM 274 (557)
Q Consensus 269 sp~lLl 274 (557)
-.|+.
T Consensus 288 -DsIr~ 292 (680)
T KOG0042|consen 288 -DSIRK 292 (680)
T ss_pred -HHHHh
Confidence 44433
No 107
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.47 E-value=4.1e-07 Score=91.63 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=37.0
Q ss_pred cCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCch
Q 008675 207 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 270 (557)
Q Consensus 207 ~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp 270 (557)
...+|++|+ +.+|+.|+.+++ ++.||... +|+. +. ++.||||+|.+...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEecccccCc
Confidence 456899996 678999999887 99999885 5653 33 79999999995443
No 108
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=9.9e-07 Score=93.56 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|+..||+||||+|++|..+|.+|++ |++|+|+|+..
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3557999999999999999999999 99999999864
No 109
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.44 E-value=3.7e-06 Score=87.04 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=34.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+..+||||||+|.+|+++|+.|++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 467999999999999999999999 9999999998754
No 110
>PLN02985 squalene monooxygenase
Probab=98.42 E-value=3.4e-06 Score=89.97 Aligned_cols=38 Identities=32% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 27 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
...+..|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 345668999999999999999999999 99999999964
No 111
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.42 E-value=3.4e-06 Score=88.30 Aligned_cols=39 Identities=33% Similarity=0.509 Sum_probs=34.9
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.+..+|||+|||+|++|+++|..|++ |.+|+|||+.+..
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34457999999999999999999999 9999999998753
No 112
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.39 E-value=2.3e-06 Score=88.85 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=34.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+...+||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4567999999999999999999999 999999999864
No 113
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.39 E-value=7.7e-07 Score=95.51 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=43.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
+...+++.|++|++++.|++|..+++ ++++|++. +|+. +. ++.||+|++...+-..|+
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~~-----ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--LD-----ADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--EE-----CCEEEECCcHHHHHHHhc
Confidence 44455677999999999999998765 88888875 5543 32 688999988766665554
No 114
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=6.4e-06 Score=86.24 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCe-EEEEeeCCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSPY 67 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G~~~~ 67 (557)
...+.+||+|||+|++|+++|++|.+ |.. ++|+||.....
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 45678999999999999999999999 877 99999997654
No 115
>PRK07208 hypothetical protein; Provisional
Probab=98.32 E-value=7.6e-06 Score=87.35 Aligned_cols=40 Identities=30% Similarity=0.304 Sum_probs=35.9
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
|++..||||||||.+|+++|++|++ |.+|+|||+.+...+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4677899999999999999999999 999999999876544
No 116
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.30 E-value=1e-05 Score=81.17 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc------CCeEEEEeeCCCCCCCCCccchhhhhhccCCCCCCCcCccccCCCccc
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVI 101 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae------g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (557)
.|...||+||||+|++|+.+|++|+. .++|+++|.|.......- + .... +.. ..+ .+ ....
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~---~-~~~~---~~~--~c~--~~--~~~~ 80 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLC---P-KDEK---KLE--KCP--KC--DPCP 80 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhc---c-cccc---chh--hcC--CC--CCce
Confidence 45668999999999999999999995 479999999976532100 0 0000 000 000 00 0111
Q ss_pred ccCcceecccccccCceee-cCCc-chhcc--CCCCh-hhhhhhhhhhhhhhccCCC--CCchhHHHHH-HHHHcCC--C
Q 008675 102 NSRARVLGGGSCLNAGFYT-RAAP-YYVRE--VGWDE-RLVNESYQWVEKVVAFEPP--MRQWQSAVRD-GLVEVGV--L 171 (557)
Q Consensus 102 ~~~g~~lGG~s~~n~~~~~-r~~~-~~~~~--~gw~~-~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~-~~~~~g~--~ 171 (557)
--.++||+..+..+... |+.. .+++. .+|.. -++..+-+...-+++.... ..+....+.+ .+.+.|. +
T Consensus 81 --I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~e 158 (486)
T COG2509 81 --IVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEE 158 (486)
T ss_pred --eEecccccccccccceecccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCce
Confidence 12467888887777665 2221 12211 12221 0011111111111111100 0111122221 2223332 2
Q ss_pred CCCCCCcCCCCceeeeeeEECCCCccccHHHhhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEe
Q 008675 172 PYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 251 (557)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~ 251 (557)
...- ...+. | .+..+.-..++....+..|++++.+++|+.|++.++ .+.+|... +|.+ +
T Consensus 159 il~~-~~rHi-----G-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--i- 217 (486)
T COG2509 159 ILPI-YQRHI-----G-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--I- 217 (486)
T ss_pred eeec-ccccc-----C-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--E-
Confidence 1100 00111 1 122222223344455667899999999999999887 67777765 5654 3
Q ss_pred eecCCceEEEEccCCcCchHHHHhhcCCCcc
Q 008675 252 LKNGPKNEIIVSAGALGSPQLLMLSGAHNIT 282 (557)
Q Consensus 252 ~~~~aa~~VIlaaGa~~sp~lLl~Sg~~gi~ 282 (557)
.++.||||-|--+.-.+-++..+.|+.
T Consensus 218 ----~~~~vvlA~Grsg~dw~~~l~~K~Gv~ 244 (486)
T COG2509 218 ----EADYVVLAPGRSGRDWFEMLHKKLGVK 244 (486)
T ss_pred ----ecCEEEEccCcchHHHHHHHHHhcCcc
Confidence 279999999988877777777655554
No 117
>PRK06126 hypothetical protein; Provisional
Probab=98.30 E-value=1.7e-05 Score=86.00 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
..++||+|||+|++|+++|..|++ |.+|+|+||...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 446999999999999999999999 999999998753
No 118
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.30 E-value=1.3e-05 Score=86.56 Aligned_cols=37 Identities=38% Similarity=0.500 Sum_probs=33.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+||+|||+|++|+++|..|++ |.+|+||||....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 567999999999999999999999 9999999998643
No 119
>PRK06834 hypothetical protein; Provisional
Probab=98.27 E-value=9.4e-06 Score=86.34 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.++||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999 999999999764
No 120
>PLN02697 lycopene epsilon cyclase
Probab=98.26 E-value=5.5e-06 Score=88.06 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=31.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
...|||||||+|+||+++|..|++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 446999999999999999999999 9999999985
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.26 E-value=1.4e-05 Score=83.26 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999986
No 122
>PRK08244 hypothetical protein; Provisional
Probab=98.26 E-value=1.4e-05 Score=85.44 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+|||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4899999999999999999999 9999999998643
No 123
>PRK06847 hypothetical protein; Provisional
Probab=98.24 E-value=1.8e-05 Score=81.66 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|.+..||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3456899999999999999999999 999999999754
No 124
>PRK06184 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-05 Score=86.45 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 46999999999999999999999 9999999997643
No 125
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.17 E-value=6.4e-06 Score=87.57 Aligned_cols=32 Identities=44% Similarity=0.728 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|||||||+|.+|+.+|..+++ |.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999974
No 126
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.17 E-value=2.4e-05 Score=81.49 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~ 65 (557)
.|||+|||+|++|+++|..|++ | .+|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 3899999999999999999999 6 89999999864
No 127
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.16 E-value=1.8e-06 Score=90.66 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=35.0
Q ss_pred ccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 25 TAAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 25 ~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.......|||||||+|+||+++|..|++ |.+|+|||+..
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 33444567999999999999999999999 99999999964
No 128
>PRK07190 hypothetical protein; Provisional
Probab=98.13 E-value=1.4e-05 Score=85.04 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
..+||||||+|++|+++|..|++ |.+|+||||.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 45899999999999999999999 9999999998643
No 129
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.12 E-value=1.7e-05 Score=79.14 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCch
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 270 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp 270 (557)
..+.+++.|.+|.++++|.+|+.|++ +|+||.+. +|++ ++ +|.||-.|+-+.|=
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTF 323 (561)
T ss_pred HHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcE--EE-----eeeeecCCchHHHH
Confidence 55677889999999999999999996 99999998 6765 33 57787777776665
No 130
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.10 E-value=1.6e-05 Score=82.21 Aligned_cols=32 Identities=44% Similarity=0.649 Sum_probs=31.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.+||+|||+|++|+++|..|++ |.+|+|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5899999999999999999999 9999999998
No 131
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=4.5e-05 Score=82.72 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+ .+|+...+. +|.||||+|+++.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 334556789999999999999987544 999999865 457665654 7899999999885
No 132
>PRK11445 putative oxidoreductase; Provisional
Probab=98.09 E-value=4.7e-05 Score=77.65 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhcCCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Laeg~~VlvLE~G~~ 65 (557)
|||+|||+|+||+++|..|++..+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999988789999999864
No 133
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.06 E-value=7.9e-05 Score=80.83 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
....+||+|||+|++|+++|..|++ |.+|+||||...
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3467999999999999999999999 999999999863
No 134
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.05 E-value=3.2e-06 Score=63.47 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.1
Q ss_pred EECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 37 IIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 37 IVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
|||+|++|+++|++|++ |.+|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999 99999999998654
No 135
>PRK07236 hypothetical protein; Provisional
Probab=98.03 E-value=8.5e-05 Score=76.89 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+..+||||||||++|+++|..|++ |.+|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 456899999999999999999999 999999999753
No 136
>PRK07588 hypothetical protein; Provisional
Probab=97.99 E-value=2.1e-05 Score=81.57 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 89999999999999999999 999999999853
No 137
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=7.2e-06 Score=78.40 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=34.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~ 69 (557)
.||+||||||.+|+++|..|++ |.+||||||-+...++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 3899999999999999999999 9999999998766543
No 138
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.96 E-value=2e-05 Score=84.07 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
-|+|||||++|+++|..|.| |..|+++||.+...
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC
Confidence 38999999999999999999 99999999987654
No 139
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=2e-05 Score=80.76 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=39.5
Q ss_pred cCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 207 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 207 ~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
...+|++|+-++ |+.|+.+++. +|.||... +|..+ .++.|||++|.|-.-+|
T Consensus 111 e~~~NL~l~q~~-v~dli~e~~~----~v~GV~t~--~G~~~-------~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 111 ENQPNLHLLQGE-VEDLIVEEGQ----RVVGVVTA--DGPEF-------HAKAVVLTTGTFLRGKI 162 (621)
T ss_pred hcCCCceehHhh-hHHHhhcCCC----eEEEEEeC--CCCee-------ecCEEEEeecccccceE
Confidence 356899998665 8888887663 79999986 57542 37999999999866555
No 140
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.94 E-value=7.2e-05 Score=80.40 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
...||++|||||+||+.+|..|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999975
No 141
>PRK06753 hypothetical protein; Provisional
Probab=97.94 E-value=0.00011 Score=75.80 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
||||||||++|+++|..|++ |.+|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999998753
No 142
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.93 E-value=5.9e-06 Score=85.60 Aligned_cols=31 Identities=45% Similarity=0.813 Sum_probs=30.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
|||||||+|+||+++|+.|++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 899999999999999999999 9999999997
No 143
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.93 E-value=5.6e-05 Score=78.91 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred eEECCCCccccHHH---hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccC
Q 008675 189 TIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG 265 (557)
Q Consensus 189 ~~~~~~g~r~~~~~---~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaG 265 (557)
-+.+.+|.-..... +...|++.|+.|+.+|.|++|....+ +..||++. .|... +..||=|||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~ie--------t~~~VNaaG 240 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSIE--------TECVVNAAG 240 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Cccee--------cceEEechh
Confidence 34455665544433 34477889999999999999999877 45588875 57542 577999999
Q ss_pred CcCchHHHHhhc
Q 008675 266 ALGSPQLLMLSG 277 (557)
Q Consensus 266 a~~sp~lLl~Sg 277 (557)
-+. -..--++|
T Consensus 241 vWA-r~Vg~m~g 251 (856)
T KOG2844|consen 241 VWA-REVGAMAG 251 (856)
T ss_pred HHH-HHhhhhcC
Confidence 554 33344455
No 144
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.91 E-value=4.1e-05 Score=72.92 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=34.4
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCC
Q 008675 27 AQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (557)
Q Consensus 27 ~~~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~ 66 (557)
+.....||.||||+|..|++.|++|.- +++|+|||+-...
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 344568999999999999999999875 8999999998643
No 145
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.90 E-value=8.9e-06 Score=80.67 Aligned_cols=34 Identities=41% Similarity=0.726 Sum_probs=32.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
|||+|||+|++|+++|..|++ |.+|+|||+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999998754
No 146
>PRK06370 mercuric reductase; Validated
Probab=97.89 E-value=1.1e-05 Score=85.64 Aligned_cols=38 Identities=47% Similarity=0.683 Sum_probs=34.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
|+.+||+||||+|+||..+|.+|++ |++|+|+|++...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G 40 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLG 40 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccC
Confidence 5678999999999999999999999 9999999997543
No 147
>PRK06116 glutathione reductase; Validated
Probab=97.88 E-value=9.9e-06 Score=85.63 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.+||+||||+|+||+.+|.+|++ |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 457999999999999999999999 99999999974
No 148
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.85 E-value=0.00022 Score=77.41 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCcCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~~s 269 (557)
+...+.+.|++|++++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 34456678999999999999998754 999999865 356655654 7999999999875
No 149
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.84 E-value=1.2e-05 Score=84.82 Aligned_cols=34 Identities=41% Similarity=0.568 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.||+||||||+||+.+|.+|++ |++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46999999999999999999999 99999999975
No 150
>PRK05868 hypothetical protein; Validated
Probab=97.83 E-value=0.00017 Score=74.11 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 89999999999999999999 999999999754
No 151
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.82 E-value=0.00017 Score=83.34 Aligned_cols=64 Identities=23% Similarity=0.182 Sum_probs=47.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
++...++.|+++++++.|+++.-+ + ++.+|++...+|...++. ++.|+++.|..-+..|+...|
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhcC
Confidence 334456779999999999998632 2 677888774334445554 799999999888888887766
No 152
>PRK08013 oxidoreductase; Provisional
Probab=97.82 E-value=1.5e-05 Score=82.81 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+.|||+|||+|++|+++|..|++ |.+|+|||+.+..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 46999999999999999999999 9999999998753
No 153
>PLN02463 lycopene beta cyclase
Probab=97.81 E-value=1.7e-05 Score=82.86 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=33.3
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.....|||||||+|+||+++|..|++ |++|+|||+.+
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 34456999999999999999999999 99999999964
No 154
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=1.4e-05 Score=84.92 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|...||+||||||+||+.+|.+|++ |++|+|+|++..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 38 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL 38 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 4568999999999999999999999 999999999743
No 155
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.81 E-value=1.3e-05 Score=81.60 Aligned_cols=35 Identities=37% Similarity=0.623 Sum_probs=30.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+|||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 4899999999999999999999 9999999998654
No 156
>PRK09126 hypothetical protein; Provisional
Probab=97.80 E-value=1.5e-05 Score=82.82 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=33.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+|||||||+|++|+++|..|++ |.+|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 6999999999999999999999 9999999999753
No 157
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.80 E-value=1.6e-05 Score=83.67 Aligned_cols=34 Identities=44% Similarity=0.585 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.||+||||||+||+.+|.+|++ |.+|+|+|+++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 46999999999999999999999 99999999975
No 158
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.79 E-value=1.9e-05 Score=81.84 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
++..|||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3557999999999999999999999 999999999754
No 159
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.79 E-value=1.4e-05 Score=84.29 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
++||+||||+|+||..+|.+|++ |.+|+|+|++..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~ 36 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL 36 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc
Confidence 46999999999999999999999 999999999643
No 160
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.77 E-value=1.5e-05 Score=82.61 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+||||||+|+||+++|..|++ |.+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999964
No 161
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.76 E-value=2e-05 Score=81.82 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+.|||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 356999999999999999999999 999999999753
No 162
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.76 E-value=0.00024 Score=76.41 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=50.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
++..+.+.|++|+++++|++|+.+++ ++.||++.+. +|+..++. ++.||+|||+ ++.+|+...|
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~~g 198 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGI-WAGRIAEYAG 198 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCc-chHHHHHhcC
Confidence 33466778999999999999998766 8999998753 45555565 7999999996 6788876655
No 163
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.75 E-value=0.00016 Score=73.01 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=38.3
Q ss_pred Hhhh-hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 202 DLLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 202 ~~l~-~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
.|+. .+++-.-.+..+++|++|..+.++ +.....|++.+.+|...++. ++.||||+| .+|.|
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~--~~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDG--DEDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEET--TEEEEEEEEEETTS-EEEEE-----ESEEEE------EE--
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCC--CccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCC
Confidence 3565 455555558889999999998763 11456677766667666665 799999999 66654
No 164
>PTZ00058 glutathione reductase; Provisional
Probab=97.75 E-value=2.2e-05 Score=84.38 Aligned_cols=36 Identities=36% Similarity=0.559 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+.+||+||||+|+||..+|.+|++ |.+|+|||++..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~ 82 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL 82 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 357999999999999999999999 999999999743
No 165
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.75 E-value=0.00019 Score=69.19 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=31.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-----CCeEEEEeeCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 67 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~~~~ 67 (557)
.+||+|||+|..|+..|+-|.| |++|+|+|+-....
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 6899999999999999998876 69999999987543
No 166
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.75 E-value=2.2e-05 Score=81.33 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=32.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.|||||||+|++|+++|..|++ |.+|+|||++...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 5899999999999999999999 9999999998754
No 167
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.75 E-value=2.1e-05 Score=83.48 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+..||+||||+|+||..+|.+|++ |.+|+|+|++..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~ 38 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW 38 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 346999999999999999999999 999999999743
No 168
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.75 E-value=2.3e-05 Score=83.15 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+..||+||||+|++|+.+|.+|++ |++|+|+|++...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 456999999999999999999999 9999999997543
No 169
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=2.3e-05 Score=83.07 Aligned_cols=32 Identities=38% Similarity=0.561 Sum_probs=30.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
..||+||||+|+||+.+|.+|++ |++|+|+|+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 35999999999999999999999 999999997
No 170
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=0.00015 Score=75.07 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
..-+++|||+|+||+++|+.|.+ |..|.++||.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG 42 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc
Confidence 35689999999999999999999 99999999997653
No 171
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.72 E-value=2.4e-05 Score=80.94 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
++|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 35899999999999999999999 99999999874
No 172
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.72 E-value=2.3e-05 Score=81.65 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=32.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
|+..|||+|||+|++|+++|..|++ |.+|+|||+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3457999999999999999999999 9999999996
No 173
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.71 E-value=4.1e-05 Score=80.52 Aligned_cols=34 Identities=47% Similarity=0.674 Sum_probs=27.1
Q ss_pred cEEEECCCcchHHHHHhhhc-C---CeEEEEeeCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSPY 67 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g---~~VlvLE~G~~~~ 67 (557)
||||||+|+||..+|..|++ + .+|+|||+...+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~ 38 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR 38 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC
Confidence 79999999999999999999 6 8999999987553
No 174
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.71 E-value=2.3e-05 Score=82.75 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=31.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+||+||||+|+||..+|.+|++ |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999 99999999964
No 175
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.71 E-value=2.9e-05 Score=79.00 Aligned_cols=35 Identities=43% Similarity=0.689 Sum_probs=32.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
||++|||||++|+++|.+|++ |.+|+|||+.....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 799999999999999999999 99999999976544
No 176
>PRK07045 putative monooxygenase; Reviewed
Probab=97.67 E-value=3.1e-05 Score=80.26 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=34.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+..|||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 357999999999999999999999 9999999999754
No 177
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=3.2e-05 Score=82.09 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..||+||||||++|+.+|.+|++ |++|+|||++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 56999999999999999999999 99999999943
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=3.3e-05 Score=81.97 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+||+||||+|+||+.+|.+|++ |.+|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999 99999999976
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.63 E-value=3.8e-05 Score=83.16 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
...|||||||||+||+.+|..|++ |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 446999999999999999999999 999999999753
No 180
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=4.7e-05 Score=80.27 Aligned_cols=41 Identities=32% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
......+|||||||.||+++|+.|.+ |.+|+|||+-++..+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 44567899999999999999999999 999999999877654
No 181
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.63 E-value=3.8e-05 Score=78.95 Aligned_cols=33 Identities=45% Similarity=0.717 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhh--hc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATL--SQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~L--ae-g~~VlvLE~G~~~ 66 (557)
||||||+|+||+.+|.+| ++ |.+|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 66 9999999998653
No 182
>PRK14694 putative mercuric reductase; Provisional
Probab=97.63 E-value=4.3e-05 Score=81.12 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+..||+||||+|+||+.+|.+|++ |++|+|+|++..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~ 40 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI 40 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 3568999999999999999999999 999999999753
No 183
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.9e-05 Score=75.73 Aligned_cols=35 Identities=46% Similarity=0.691 Sum_probs=30.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCe-EEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G~~ 65 (557)
+.||+|||||||||+++|..+++ +++ ++|+|++..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~ 38 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence 57999999999999999999999 988 777777643
No 184
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.62 E-value=4.3e-05 Score=79.49 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
++.+||+||||+|+||.++|.++++ |.||+|+|++.
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 3568999999999999999999999 98899999995
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=4e-05 Score=81.50 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
..+||+||||+|+||+.+|.+|++ |.+|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 457999999999999999999999 999999998
No 186
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.59 E-value=5.1e-05 Score=82.86 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+||+||||+|++|..+|.++++ |+||+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7999999999999999999999 9999999975
No 187
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.59 E-value=5.2e-05 Score=80.49 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.||+||||||++|+.+|.+|++ |.+|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999994
No 188
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.59 E-value=4.8e-05 Score=78.63 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=31.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999764
No 189
>PTZ00367 squalene epoxidase; Provisional
Probab=97.58 E-value=5.3e-05 Score=81.47 Aligned_cols=35 Identities=49% Similarity=0.620 Sum_probs=32.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.+|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 457999999999999999999999 99999999975
No 190
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.58 E-value=4.8e-05 Score=80.73 Aligned_cols=33 Identities=42% Similarity=0.660 Sum_probs=31.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||+||||||+||..+|.+|++ |++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 899999999999999999999 999999999753
No 191
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.57 E-value=6.1e-05 Score=67.63 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.1
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~ 66 (557)
+.|+||||+|.+|+.+|+..+. +++|.+||..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 4699999999999999999996 7999999997543
No 192
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.57 E-value=4.8e-05 Score=78.80 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||||||+|++|+.+|+.|++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999854
No 193
>PLN02507 glutathione reductase
Probab=97.56 E-value=5e-05 Score=81.05 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
..+||+||||+|++|..+|.+|++ |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 457999999999999999999999 999999996
No 194
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.56 E-value=5.4e-05 Score=75.31 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
||++|||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999985
No 195
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.55 E-value=0.0034 Score=64.67 Aligned_cols=59 Identities=20% Similarity=0.441 Sum_probs=46.2
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcC
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~ 268 (557)
.++..||+++.+++|+.|.++..+ ...+|+++++. .+|+..+|.+. ..+.|++..|++-
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~t 274 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSMT 274 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCccc
Confidence 456789999999999999998653 34578888887 46776666654 7799999999754
No 196
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.53 E-value=6.2e-05 Score=80.38 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=30.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
..||+||||+|+||+.+|.+|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 36999999999999999999999 9999999973
No 197
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.52 E-value=6.9e-05 Score=77.46 Aligned_cols=33 Identities=39% Similarity=0.660 Sum_probs=31.2
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~ 66 (557)
||||||+|++|+++|..|++ | .+|+|+|+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999998754
No 198
>PRK13748 putative mercuric reductase; Provisional
Probab=97.51 E-value=7.2e-05 Score=81.48 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999974
No 199
>PRK09897 hypothetical protein; Provisional
Probab=97.50 E-value=0.00078 Score=71.85 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.8
Q ss_pred ccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~ 66 (557)
++|+|||+|++|+.+|.+|.+ ..+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 479999999999999999987 3699999997643
No 200
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00017 Score=72.57 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=39.9
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
..+|++|+.++ |..|++.+..++..++.||... +|.. |+ ++.|||.+|.|-+.+|
T Consensus 136 st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~--dgt~--v~-----a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 136 STPNLEIREGA-VADLIVEDPDDGHCVVSGVVLV--DGTV--VY-----AESVILTTGTFLRGQI 190 (679)
T ss_pred cCCcchhhhhh-hhheeeccCCCCceEEEEEEEe--cCcE--ec-----cceEEEeeccceeeEE
Confidence 45799998776 6666665543344579999987 5643 43 7899999999877766
No 201
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.49 E-value=7.1e-05 Score=77.09 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999975
No 202
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.49 E-value=8e-05 Score=77.35 Aligned_cols=33 Identities=48% Similarity=0.643 Sum_probs=30.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc----CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae----g~~VlvLE~G 63 (557)
..|||+|||+|++|+++|..|++ |.+|+||||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 56999999999999999999976 8999999996
No 203
>PLN02546 glutathione reductase
Probab=97.48 E-value=9.5e-05 Score=79.58 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
..+||+||||+|++|..+|.+|++ |.||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999999999999999999 999999996
No 204
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.48 E-value=8.7e-05 Score=79.48 Aligned_cols=36 Identities=39% Similarity=0.556 Sum_probs=33.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
-||||||||.+|+++|..|++ |++|+|||+.....+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 589999999999999999999 999999999976654
No 205
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.45 E-value=9e-05 Score=76.75 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4899999999999999999999 999999999864
No 206
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.44 E-value=0.00011 Score=76.48 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
....||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999 999999999864
No 207
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.43 E-value=9.5e-05 Score=76.70 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5899999999999999999999 999999999864
No 208
>PLN02268 probable polyamine oxidase
Probab=97.40 E-value=0.00013 Score=76.94 Aligned_cols=36 Identities=39% Similarity=0.481 Sum_probs=33.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
.+|||||+|.+|+++|++|.+ |.+|+|||+.+...+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 379999999999999999999 999999999887664
No 209
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.39 E-value=0.00011 Score=77.30 Aligned_cols=32 Identities=44% Similarity=0.773 Sum_probs=30.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-----CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~ 64 (557)
|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 89999999964
No 210
>PRK06996 hypothetical protein; Provisional
Probab=97.38 E-value=0.00014 Score=75.49 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=32.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C----CeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g----~~VlvLE~G~~ 65 (557)
..+|||+|||+|++|+++|..|++ | ++|+|+|+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 456899999999999999999998 7 47999999753
No 211
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.37 E-value=0.00014 Score=77.33 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc--CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G 63 (557)
.+||+||||+|++|..+|.++++ |.||+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 57999999999999999999999 6999999984
No 212
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.33 E-value=0.00015 Score=76.67 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=31.5
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 68 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~~~ 68 (557)
+|||||||.+|+++|+.|++ | .+|+|||+.+...+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999999 7 89999999876543
No 213
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.32 E-value=0.00016 Score=74.84 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+||+||||+|.+|+++|..|++ |.+|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999999999999999 99999999984
No 214
>PRK10262 thioredoxin reductase; Provisional
Probab=97.32 E-value=0.00019 Score=72.20 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..+.+||+|||+|+||+.+|..|++ |++|+++|+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 4568999999999999999999999 99999999653
No 215
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.29 E-value=0.00017 Score=73.85 Aligned_cols=32 Identities=38% Similarity=0.660 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
||||||+|+||+.+|.+|++ |++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 89999999999999999987 899999999863
No 216
>PRK07233 hypothetical protein; Provisional
Probab=97.29 E-value=0.0002 Score=75.41 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
+|||||||.+|+++|+.|++ |++|+|||+.....+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999999 999999999987654
No 217
>PLN02568 polyamine oxidase
Probab=97.28 E-value=0.00024 Score=76.30 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-C-----CeEEEEeeCCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSPYG 68 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g-----~~VlvLE~G~~~~~ 68 (557)
|++.+||||||+|.+|+++|.+|++ | .+|+|||+.....+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 3446899999999999999999997 7 89999999887654
No 218
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00027 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
....||||||+|.+|+++|++|.+ |++|+|||+-+...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 567899999999999999999999 999999999876543
No 219
>PLN02576 protoporphyrinogen oxidase
Probab=97.27 E-value=0.00027 Score=75.81 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=34.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG 68 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~~~~ 68 (557)
...+||||||||.+|+++|++|++ |.+|+|||+.+...+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 445799999999999999999998 799999999876654
No 220
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.24 E-value=0.00082 Score=63.57 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-C------CeEEEEeeCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSP 66 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g------~~VlvLE~G~~~ 66 (557)
+.+.--++|||+|..|+.+|+.|++ + ..|.++|.-...
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 3444679999999999999999999 5 689999987654
No 221
>PRK14727 putative mercuric reductase; Provisional
Probab=97.22 E-value=0.0003 Score=74.93 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..||+||||+|++|..+|.+|++ |.+|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 46999999999999999999999 99999999974
No 222
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.21 E-value=0.0043 Score=63.12 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCceeeeeeEECCCCccccHHH-hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEE
Q 008675 159 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHG 237 (557)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~g 237 (557)
..+.+-+++.|++... ...+.+||...+..+... ++..+++.|++|++++.|+.| +++ + ..
T Consensus 57 ~d~~~fF~~~Gi~~~~----------e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~~ 118 (376)
T TIGR03862 57 VALQDWARGLGIETFV----------GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-LR 118 (376)
T ss_pred HHHHHHHHHCCCceEE----------CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-EE
Confidence 4566777788875211 112245554444444444 445777899999999999999 332 2 34
Q ss_pred EEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 238 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 238 V~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
|.+. .+. ..+. ++.||||+|+...|++
T Consensus 119 v~~~--~~~-~~~~-----a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 119 FETP--DGQ-STIE-----ADAVVLALGGASWSQL 145 (376)
T ss_pred EEEC--CCc-eEEe-----cCEEEEcCCCcccccc
Confidence 5443 222 1233 7999999999887765
No 223
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.21 E-value=0.00023 Score=75.65 Aligned_cols=32 Identities=41% Similarity=0.655 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+||+||||+|++|..+|.+|++ |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999 9999999974
No 224
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.18 E-value=0.00025 Score=65.88 Aligned_cols=31 Identities=45% Similarity=0.753 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
||||||||+||+.+|.+|++ +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999 99999997764
No 225
>PRK07538 hypothetical protein; Provisional
Probab=97.18 E-value=0.00026 Score=74.04 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999754
No 226
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.17 E-value=0.00038 Score=76.39 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=33.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~ 65 (557)
|.+++||+|||+|++|+++|..|++ |.+|+|||+-+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 899999999754
No 227
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.15 E-value=0.00032 Score=71.74 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-||+|||||.+|+.+|..|++ |.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 489999999999999999999 9999999987643
No 228
>PLN02676 polyamine oxidase
Probab=97.13 E-value=0.00038 Score=73.98 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=34.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG 68 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~~~~ 68 (557)
...+||||||+|++|+++|++|++ |. +|+|||+.....+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 346899999999999999999999 97 6999999887654
No 229
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.11 E-value=0.0034 Score=66.05 Aligned_cols=32 Identities=16% Similarity=0.494 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
.|||||+|+||+.+|.+|.+ +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 59999999999999999987 579999999864
No 230
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.09 E-value=0.00046 Score=72.86 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=27.9
Q ss_pred CccEEEECCCcchHHHHHhhhcCCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvLE~G~~ 65 (557)
.||+||||+|++|..+|.++ .|.||+|+|++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 59999999999998886554 2999999998654
No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00042 Score=71.43 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=32.0
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
|+|+|+|.||+++|+.|++ |++|.|+|+++...+
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 8999999999999999999 999999999987654
No 232
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.05 E-value=0.00049 Score=73.09 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=32.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-----CCeEEEEeeCCCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG 68 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~~~~~ 68 (557)
.||||||||.+|+++|++|++ |.+|+|+|+.+...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 689999999999999999997 589999999876543
No 233
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.04 E-value=0.00054 Score=74.49 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=33.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
....++|+|||||++|+++|..|++ |.+|+|+||..
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3556999999999999999999999 99999999964
No 234
>PLN02612 phytoene desaturase
Probab=97.03 E-value=0.001 Score=72.21 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
....||+|||+|.+|+++|++|++ |.+|+|+|+.....
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 345799999999999999999999 99999999976543
No 235
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.02 E-value=0.0005 Score=73.90 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
...||++|||||+||+.+|..|++ |.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999974
No 236
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.00052 Score=66.10 Aligned_cols=34 Identities=38% Similarity=0.613 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+|||+|||+|.||+++|.+|.+ |+++.++-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999974
No 237
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.97 E-value=0.00054 Score=70.18 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=45.6
Q ss_pred hhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 204 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 204 l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
...+++.|++++.+++|+++..+++ ++++|.+. ++...++. ++.||||+|++-|..|+...+
T Consensus 270 ~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l~-----AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 270 KHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPLR-----ADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceEE-----CCEEEEccCCCcCHHHHhhcC
Confidence 3445567899999999999988776 78887764 33223343 688999999988888876555
No 238
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.95 E-value=0.00074 Score=76.60 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+||+|||||+||+++|+.|++ |++|+|+|+.+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 346899999999999999999999 9999999998654
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=96.95 E-value=0.00081 Score=70.98 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=29.4
Q ss_pred CccEEEECCCcchHHHHHhhhcCCeEEEEeeCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPY 67 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvLE~G~~~~ 67 (557)
+||+||||+|++|..+|.++ .|+||+|+|++....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~GG 35 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTFGG 35 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCCCC
Confidence 49999999999999888773 399999999975443
No 240
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.92 E-value=0.00067 Score=72.09 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=30.9
Q ss_pred cEEEECCCcchHHHHHhhhc-C------CeEEEEeeCCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG 68 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g------~~VlvLE~G~~~~~ 68 (557)
+|||||||.+|+++|++|++ | .+|+|||+.+...+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 68999999876654
No 241
>PRK12831 putative oxidoreductase; Provisional
Probab=96.91 E-value=0.001 Score=70.48 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.....||+|||+|+||+.+|..|++ |++|+|+|+....
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3456899999999999999999999 9999999987543
No 242
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.91 E-value=0.00073 Score=71.56 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
+|+|||+|.+|+++|++|++ |++|+|||+.+...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999876543
No 243
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.89 E-value=0.0032 Score=63.67 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=39.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
++..+.+.|++++.+++|+.|..+++ ++++|... +| ++. ++.||+|+|+ ++++|
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~~-----a~~vV~a~G~-~~~~l 196 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DVQ-----ADQVVLAAGA-WAGEL 196 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EEE-----CCEEEEcCCh-hhhhc
Confidence 44566678999999999999997665 77787643 44 233 7899999997 44443
No 244
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00091 Score=64.58 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=33.8
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 27 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
....-+||.||||+|.+|+++|.+.+. |.||.+|+-=.
T Consensus 14 ~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 14 LFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred hcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 445668999999999999999999999 99999998753
No 245
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.87 E-value=0.025 Score=50.25 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.4
Q ss_pred EEECCCcchHHHHHhhhc-C-----CeEEEEeeCCC
Q 008675 36 IIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGS 65 (557)
Q Consensus 36 IIVGsG~aG~~~A~~Lae-g-----~~VlvLE~G~~ 65 (557)
+|||+|++|+.++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999876 2 58999999544
No 246
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.84 E-value=0.00066 Score=70.09 Aligned_cols=43 Identities=35% Similarity=0.382 Sum_probs=32.2
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~ 71 (557)
|+++|||||+|.|..-|++|..|+. |+|||.|++.+...+...
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 5679999999999999999999999 999999999998775443
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.82 E-value=0.001 Score=70.48 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
++||||+|+||..+|.+|++ |++|+|+|++...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 69999999999999999999 9999999997654
No 248
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.81 E-value=0.00091 Score=69.60 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
=+|+|||||++|+++|..|++ |.+|.|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 369999999999999999999 999999999753
No 249
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.81 E-value=0.0011 Score=65.13 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=31.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+||+||||+|++|-++|.+.++ |++...+|+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 68999999999999999999999 99999999943
No 250
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.77 E-value=0.001 Score=68.51 Aligned_cols=32 Identities=38% Similarity=0.482 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
||+|||+|.+||.+|..|++ |.+|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 79999999999999999999 999999998654
No 251
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.75 E-value=0.026 Score=58.16 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=41.4
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
...++.|+++++++.|+++..+++ . ..|+.. +|+. +. ++.||+|+|.-..+.++..+|
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~~--~g~~--i~-----~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATLD--SGRS--IE-----VDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccCC-----E-EEEEEc--CCcE--EE-----CCEEEECcCCCcchHHHHHCC
Confidence 345567999999999999976543 2 234443 5643 43 799999999877777877776
No 252
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.74 E-value=0.0065 Score=62.72 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=36.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
+...+.+ |++++.++.|++|..+++ + ..|+ ..+|.. +. ++.||+|+|+ +++.|
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v~--t~~g~~--~~-----a~~vV~a~G~-~~~~l 193 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE-----G-WQLL--DANGEV--IA-----ASVVVLANGA-QAGQL 193 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC-----e-EEEE--eCCCCE--EE-----cCEEEEcCCc-ccccc
Confidence 3345667 999999999999987654 3 2343 335642 32 7999999996 44444
No 253
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.69 E-value=0.0019 Score=50.25 Aligned_cols=32 Identities=38% Similarity=0.626 Sum_probs=30.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
++|||+|..|+-+|..|++ |.+|.|||+++..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999765
No 254
>PLN02529 lysine-specific histone demethylase 1
Probab=96.68 E-value=0.0016 Score=71.76 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=34.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
....||||||+|++|+.+|..|++ |++|+|||+.....+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 356899999999999999999999 999999999876543
No 255
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.67 E-value=0.0017 Score=64.58 Aligned_cols=36 Identities=47% Similarity=0.817 Sum_probs=31.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-----CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~~ 65 (557)
...|||||||||+.|.++|..|.. .+||+|||.|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 347999999999999999999976 489999999964
No 256
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.67 E-value=0.0018 Score=68.29 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+||+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 456899999999999999999999 9999999997643
No 257
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.66 E-value=0.0019 Score=68.60 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 456799999999999999999999 9999999998654
No 258
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.66 E-value=0.0016 Score=65.16 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+-+|||||||.+|++.|..|.+ |.+|+|+|+-..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4579999999999999999999 999999999543
No 259
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.65 E-value=0.0018 Score=71.78 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
....+|||||+|++|+.+|+.|++ |.+|+|+|+.....+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 456899999999999999999999 999999999876543
No 260
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.64 E-value=0.0022 Score=62.34 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 28 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
....+|||.|||+|.+|...|++.++ |.||.|+|..-
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 34558999999999999999999999 99999999983
No 261
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.61 E-value=0.0017 Score=67.19 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=30.9
Q ss_pred EEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 68 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~~~ 68 (557)
++|||||.+|+.+|++|.+ + ..|.|+|+++...+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 7999999999999999999 7 89999999976543
No 262
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.54 E-value=0.0021 Score=65.18 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=33.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
.-+++|||||.||+.+|..|++ |.+|.|+|+-+...+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 4579999999999999999999 999999999876653
No 263
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.52 E-value=0.0021 Score=68.25 Aligned_cols=64 Identities=17% Similarity=0.341 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHH
Q 008675 204 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (557)
Q Consensus 204 l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lL 273 (557)
....++.|.+|++++.|++|..++++++..++++|++.+.++. .++ .++.||+|+......+||
T Consensus 226 ~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 226 LEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence 3344557999999999999998752101114888888532221 223 368999999987777765
No 264
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.51 E-value=0.0027 Score=72.56 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=33.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
...+|+|||||+||+++|..|++ |++|+|+|+.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 35789999999999999999999 99999999986543
No 265
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.51 E-value=0.002 Score=67.33 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
.|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 7 59999999754
No 266
>PLN02487 zeta-carotene desaturase
Probab=96.44 E-value=0.0038 Score=67.30 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
+..+|+|||+|++|+++|+.|++ |++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 34699999999999999999999 99999999987654
No 267
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.41 E-value=0.003 Score=64.18 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=34.2
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG 68 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~~~ 68 (557)
.....-+||||+|.||+.+|.+|-+ | ..|+|+|+.++..+
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3445679999999999999999997 4 79999999987754
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.40 E-value=0.0026 Score=73.37 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+|+|||||+||+++|..|++ |++|+|+|++...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35799999999999999999999 9999999998654
No 269
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.39 E-value=0.003 Score=70.04 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+|+|||||+||+++|..|++ |++|+|+|+....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999997654
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.38 E-value=0.0033 Score=71.21 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
....+|+|||||+||+.+|+.|++ |++|+|+|+.+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 345789999999999999999999 99999999986543
No 271
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.36 E-value=0.0033 Score=66.61 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
....+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 445799999999999999999999 9999999998654
No 272
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.36 E-value=0.0034 Score=70.72 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
....||+|||||+||+++|..|++ |++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 356799999999999999999999 999999999643
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.34 E-value=0.0029 Score=67.21 Aligned_cols=32 Identities=41% Similarity=0.642 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|+||||+|++|+.+|..|++ |.+|+|+|++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~ 35 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 79999999999999999999 999999999764
No 274
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.28 E-value=0.0048 Score=65.10 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~~ 67 (557)
....|+|||||+||+.+|..|++ |++|.|+|+-+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 35689999999999999999984 89999999987654
No 275
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.22 E-value=0.0053 Score=62.62 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=32.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+++|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34689999999999999999999 9999999998654
No 276
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.12 E-value=0.031 Score=59.29 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999999999999999999 999999999753
No 277
>PLN03000 amine oxidase
Probab=96.09 E-value=0.0053 Score=68.35 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~ 68 (557)
...||||||+|++|+.+|+.|++ |++|+|+|+.....+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 46899999999999999999999 999999999877654
No 278
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.06 E-value=0.0064 Score=67.22 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+|+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45799999999999999999999 9999999998654
No 279
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.00 E-value=0.01 Score=61.96 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=38.0
Q ss_pred CCcccccccccCCCCCCccEEEECCCcchHHHHHhhh-c-CCeEEEEeeCCCCCC
Q 008675 16 PNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSPYG 68 (557)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La-e-g~~VlvLE~G~~~~~ 68 (557)
...+|...-...+.....-|+|||||+||+.+|.+|. + |.+|.|+|+-+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 23 GKLPFTGKCFFTNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCCCCccccCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 3344443332333334457999999999999999865 5 999999999987653
No 280
>PLN02976 amine oxidase
Probab=95.94 E-value=0.0071 Score=70.00 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
..+|++|||+|++|+.+|+.|++ |.+|+|||+.....
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 35899999999999999999999 99999999976554
No 281
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.93 E-value=0.06 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY 67 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~~ 67 (557)
.-+||||||.+|+.+|.+|.+ . .+|+|||+-....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 358999999999999999999 4 8899999987643
No 282
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.85 E-value=0.0062 Score=68.63 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~ 65 (557)
+|+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999998 689999999864
No 283
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.85 E-value=0.0071 Score=67.88 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.....|+|||+|+||+.+|+.|++ |++|+|+|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 345789999999999999999999 99999999864
No 284
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.84 E-value=0.0083 Score=63.63 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999998654
No 285
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.80 E-value=0.096 Score=56.43 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=43.7
Q ss_pred CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHh
Q 008675 210 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (557)
Q Consensus 210 ~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~ 275 (557)
.|+++++++.|+++.-+++ ++++|++.+. +|+..++. ++.|++|.|..-.+.+|..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHhh
Confidence 5899999999999986544 8889988763 45555554 7999999998887777654
No 286
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.74 E-value=0.094 Score=55.74 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 68999999999999999999 999999998753
No 287
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.66 E-value=0.011 Score=63.05 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
...+|+|||+|++|+.+|..|++ |.+|+|+|+...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999 999999999864
No 288
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.65 E-value=0.12 Score=55.57 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHH
Q 008675 210 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (557)
Q Consensus 210 ~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl 274 (557)
.|+++++++.|+++.-+++ ++++|++.+. +|+..++. ++.||+|.|..-.+.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i~-----~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQLD-----LDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEEeCCcCCchHHh
Confidence 5899999999999975544 7888988753 34444554 799999999877777664
No 289
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.61 E-value=0.037 Score=56.93 Aligned_cols=32 Identities=38% Similarity=0.656 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
||++|||+|.+|+++|..|++ |++|+|+|+|.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 799999999999999999999 99999999986
No 290
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.59 E-value=0.13 Score=54.76 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=30.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 379999999999999999999 999999999853
No 291
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.58 E-value=0.011 Score=65.20 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 46789999999999999999999 99999999987543
No 292
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.43 E-value=0.068 Score=60.51 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=27.4
Q ss_pred EEEECCCcchHHHHHhhhc----CCeEEEEeeCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 66 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae----g~~VlvLE~G~~~ 66 (557)
+||||+|+||+.+|.+|.+ +.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 5899999999999998766 4699999988653
No 293
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.37 E-value=0.13 Score=54.74 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 68999999999999999999 999999998753
No 294
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.35 E-value=0.02 Score=55.96 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCccEEEECCCcchHHHHHhhhcCCeEEEEeeCCCCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNP 70 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Laeg~~VlvLE~G~~~~~~~ 70 (557)
..-++.|||+|.+|+++|+.|+.-.+|.|.|++....+..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence 4467999999999999999999988999999998776543
No 295
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.27 E-value=0.16 Score=53.22 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.+|||+|..|+-.|.-++. |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 49999999999999999999 9999999999754
No 296
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.21 E-value=0.021 Score=57.45 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~~ 67 (557)
..-+++|||+|.+|+.+|+.|++ + ..|.|.|++++..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 35689999999999999999999 4 5678899998754
No 297
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.016 Score=57.76 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=38.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~ 71 (557)
|+++|||||+|.|.-=|+++..|+- |.+||.++|.+...+...
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 5667999999999999999999999 999999999988765433
No 298
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.15 E-value=0.018 Score=62.74 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
...-+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345689999999999999999999 9999999987654
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=95.13 E-value=0.023 Score=62.49 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
....+++|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 456789999999999999999999 9999999998754
No 300
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.08 E-value=0.02 Score=59.41 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~ 66 (557)
..+|||||+|+||+.+|..|++ | .+|+|+++....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4579999999999999999998 6 489999998643
No 301
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.23 Score=51.29 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=28.0
Q ss_pred ccEEEECCCcchHHHHHhhhc----CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae----g~~VlvLE~G~~ 65 (557)
++|+|||+|++|..+|..|.+ ..+|.|+|.-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 789999999999999999977 234999998654
No 302
>PRK10262 thioredoxin reductase; Provisional
Probab=94.99 E-value=0.33 Score=48.77 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.++|||+|..|+-+|..|++ +.+|.++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 68999999999999999999 99999999874
No 303
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.014 Score=56.95 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=48.8
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhh
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~S 276 (557)
.+.-+|++|++|++-+.|.=|+. +|+|.+|++. +|+.+.+. =..|.+--|-+-+..+|.-+
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HhcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 34568999999999999987766 9999999985 46666665 36788888988888888755
No 304
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.89 E-value=0.36 Score=47.67 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=39.5
Q ss_pred CCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchHHHHhh
Q 008675 210 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (557)
Q Consensus 210 ~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~S 276 (557)
.|++++++++|+++.-+ + ++.+|++.+. +|+..++. ++.||+|+|....+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD-N-----KVEGVKIKNTVTGEEEELK-----VDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc-C-----cEEEEEEEecCCCceEEEE-----ccEEEEeeCCCCChHHHHHh
Confidence 37889999999998643 2 6667777642 35545554 79999999976666666544
No 305
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.72 E-value=0.19 Score=57.14 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHHHhhc
Q 008675 209 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (557)
Q Consensus 209 ~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lLl~Sg 277 (557)
+.|+++++++.|++|..++.. ....|.+. +|+. +. ++.||+|+|.--+..|+..+|
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i~-----~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--LE-----VDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--EE-----cCEEEECCCcccCchHHhhcC
Confidence 458999999999999754332 45556654 5653 33 799999999887778776676
No 306
>PRK12831 putative oxidoreductase; Provisional
Probab=94.70 E-value=0.19 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999 99999998764
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.69 E-value=0.026 Score=59.61 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~~~ 66 (557)
.|||||+|+||+.+|..|++ + .+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 59999999999999999998 5 599999998753
No 308
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.68 E-value=0.24 Score=52.34 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999999874
No 309
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.56 E-value=0.039 Score=57.83 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
+...++||||+|.||+.+|.+|.. +.+|+|||+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 445789999999999999999987 7999999987654
No 310
>PLN02507 glutathione reductase
Probab=94.29 E-value=0.38 Score=51.51 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 69999999999999999999 999999998753
No 311
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.054 Score=54.01 Aligned_cols=41 Identities=34% Similarity=0.385 Sum_probs=37.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~~~ 71 (557)
.+||+||||.|..=+++|...++ |.+||-|++.....+++.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccc
Confidence 57999999999999999999999 999999999988776554
No 312
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.95 E-value=0.28 Score=55.56 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 58999999999999999999 99999999875
No 313
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.73 E-value=0.05 Score=56.96 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.-.|.||||||+|+.+|..|+. |++|++.|+-+..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 3789999999999999999999 9999999997654
No 314
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.70 E-value=0.1 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=30.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
..||.+|||+|-||+-+|..|+| |.+|.++-+-
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 35999999999999999999999 9999998764
No 315
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.09 Score=51.94 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=35.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~~~ 69 (557)
.|||||+|.|.-=|+++.+|+- |.+||+|++.+.....
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 6999999999999999999998 9999999999877643
No 316
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.074 Score=52.73 Aligned_cols=36 Identities=33% Similarity=0.414 Sum_probs=30.9
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY 67 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~~ 67 (557)
..-|+|||||+||..+|..|-+ +.+|-|.|+-+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 4479999999999999998765 69999999987654
No 317
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=0.073 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=29.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-+.|||+|.||+-+|+++++ |.+|.|.|--+..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 48999999999999999999 9999999986543
No 318
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.13 E-value=0.085 Score=54.04 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhhc----CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae----g~~VlvLE~G~~~ 66 (557)
.|||||+|+||..+|.+|.+ +.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999963 6899999988754
No 319
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.06 E-value=0.12 Score=57.82 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=33.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
.-.-|.|||||++|+.+|..|-+ |+.|+|.||.++..
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 34789999999999999999999 99999999998764
No 320
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.72 E-value=0.43 Score=47.34 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=37.0
Q ss_pred CcccccccccCCCCCCccEEEECCCcchHHHHHhhhc-----CCeEEEEeeCCCC
Q 008675 17 NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSP 66 (557)
Q Consensus 17 ~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~~~ 66 (557)
|+.-+..++.......--+-|||+|.||+++|.-|-+ |.++-+||.=+..
T Consensus 7 nyeafa~pkkpE~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~ 61 (587)
T COG4716 7 NYEAFAEPKKPENVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLA 61 (587)
T ss_pred cHHHhcCccCccccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCccc
Confidence 3444445555444555668899999999999999876 5799999986654
No 321
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.20 E-value=0.12 Score=49.95 Aligned_cols=39 Identities=26% Similarity=0.522 Sum_probs=33.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--C-CeEEEEeeCCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSPY 67 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvLE~G~~~~ 67 (557)
..++|.++|||||.+|+.+|.++.+ + -+|.|||--.+..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy 77 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY 77 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcc
Confidence 3468999999999999999999998 4 5899999876543
No 322
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.19 E-value=0.11 Score=49.02 Aligned_cols=32 Identities=38% Similarity=0.683 Sum_probs=28.9
Q ss_pred EEEECCCcchHHHHHhhhc---CCeEEEEeeCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~ 66 (557)
+||||||.||-.+|..|+. ...||||-+.+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 7999999999999999998 6899999888654
No 323
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.64 E-value=0.15 Score=44.89 Aligned_cols=30 Identities=40% Similarity=0.579 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.|+|+|..|+..|++|++ |.+|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 5899999999999999999 99999999886
No 324
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.33 E-value=0.17 Score=52.53 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.-+++|||+|..|+.+|..|++ |.+|.++|+.+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 4689999999999999999999 9999999999765
No 325
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.18 E-value=0.19 Score=47.55 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=29.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+||||+|--|..+|..|++ |..|+++|+-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 58999999999999999999 999999999753
No 326
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.58 E-value=0.65 Score=48.32 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=43.0
Q ss_pred hhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHH
Q 008675 204 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (557)
Q Consensus 204 l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lL 273 (557)
....++.|++++++++|+++..+++ +++.|.. .+|+...+. ++.||||+|.+.+.-|.
T Consensus 266 ~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 266 RRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCcee
Confidence 3445567999999999999988765 6766653 255555554 78999999998766653
No 327
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.55 E-value=1.3 Score=50.13 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCe-EEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G~ 64 (557)
.|||||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999988 876 99998863
No 328
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.17 E-value=0.27 Score=50.98 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 369999999999999999999 9999999998653
No 329
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.04 E-value=0.67 Score=49.61 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=46.2
Q ss_pred CCCccccHHHhhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCCeeEEeeecCCceEEEEccCCcCchH
Q 008675 193 QNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (557)
Q Consensus 193 ~~g~r~~~~~~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~v~~~~~aa~~VIlaaGa~~sp~ 271 (557)
.+|...-+..+...+++.|.+|++++.|++|+.+++ ++++|.+.+. +|+..++. ++.||+++....+.+
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLLE 297 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHHH
Confidence 344333233344455567999999999999999876 7889987642 12223343 788999888755544
Q ss_pred H
Q 008675 272 L 272 (557)
Q Consensus 272 l 272 (557)
|
T Consensus 298 l 298 (492)
T TIGR02733 298 L 298 (492)
T ss_pred h
Confidence 3
No 330
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=0.28 Score=45.11 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=29.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||||+|+-++|..+++ .+|-+|.|-+..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~ 42 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA 42 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeec
Confidence 369999999999999999999 899999998643
No 331
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.65 E-value=0.24 Score=43.92 Aligned_cols=29 Identities=38% Similarity=0.522 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+.|+|+|..|.++|..|++ |.+|.|..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 6899999999999999999 9999998775
No 332
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.98 E-value=0.37 Score=50.75 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998653
No 333
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.84 E-value=0.4 Score=49.33 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=31.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 469999999999999999999 9999999998753
No 334
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.79 E-value=0.42 Score=44.14 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3579999999999999999999 999999988764
No 335
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.73 E-value=0.39 Score=47.82 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 58999999999999999999 99999999974
No 336
>PRK07846 mycothione reductase; Reviewed
Probab=88.47 E-value=0.43 Score=50.41 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 479999999999999999999 9999999998643
No 337
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.30 E-value=0.45 Score=50.46 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 379999999999999999999 9999999998643
No 338
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=88.18 E-value=0.44 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|||+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 69999999999999999999 9999999998653
No 339
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.18 E-value=0.42 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.8
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|.|||+|..|..+|..++. |.+|.|++...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 6899999999999999999 99999999853
No 340
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.15 E-value=0.44 Score=50.67 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=30.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|||+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 69999999999999999999 9999999998753
No 341
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.00 E-value=0.46 Score=50.41 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 479999999999999999999 9999999998643
No 342
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.64 E-value=0.66 Score=46.82 Aligned_cols=38 Identities=34% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEeeCCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP 66 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~G~~~ 66 (557)
|++.+|+|.||-|+.-+.+|..|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 5678999999999999999999999 6899999998643
No 343
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.64 E-value=0.37 Score=49.43 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=29.8
Q ss_pred CccEEEECCCcchHHHHHhhhc--C------------CeEEEEeeCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ--N------------ASVLLLERGGSP 66 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae--g------------~~VlvLE~G~~~ 66 (557)
.-+++|||||+.|.=+|.+|++ . .+|.|+|+|+..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 3579999999999999999876 1 299999999865
No 344
>PRK06370 mercuric reductase; Validated
Probab=87.00 E-value=0.59 Score=49.62 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=31.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 379999999999999999999 9999999998653
No 345
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.74 E-value=0.62 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 369999999999999999999 9999999998643
No 346
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.46 E-value=0.61 Score=49.11 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 69999999999999999999 999999999864
No 347
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.46 E-value=0.66 Score=49.24 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 69999999999999999999 9999999998653
No 348
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=86.43 E-value=1.2 Score=47.06 Aligned_cols=53 Identities=13% Similarity=0.329 Sum_probs=38.0
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCee-EEeeecCCceEEEEccCC
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKH-RAYLKNGPKNEIIVSAGA 266 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~-~v~~~~~aa~~VIlaaGa 266 (557)
..+++.|.+|++++.|++|..++++ +++||++.+..|+.. ++. ++.||+|+..
T Consensus 221 ~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~ 274 (453)
T TIGR02731 221 DYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEVT-----ADAYVSAMPV 274 (453)
T ss_pred HHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence 3344568999999999999876553 788999875333222 343 7889999865
No 349
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=86.39 E-value=0.65 Score=48.73 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=30.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 369999999999999999999 999999999864
No 350
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.08 E-value=0.74 Score=42.07 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.5
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.|||.|..|+.+|..||+ |++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999998874
No 351
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.03 E-value=0.87 Score=45.54 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+.|||+|..|+.+|.+|++ |.+|.++-|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 59999999999999999999 99999998874
No 352
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=85.99 E-value=0.72 Score=48.90 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 369999999999999999999 9999999998643
No 353
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.87 E-value=0.77 Score=38.14 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|||||.|..|..+|..|.+ +.+|+++|+-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 77999999975
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=85.66 E-value=0.75 Score=48.78 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 369999999999999999999 9999999998643
No 355
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.30 E-value=0.8 Score=48.44 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 469999999999999999999 999999999864
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.00 E-value=0.88 Score=48.04 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 59999999999999999999 9999999998653
No 357
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=85.00 E-value=0.84 Score=52.03 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.6
Q ss_pred cEEEECCCcchHHHHHhhhc-----CCeEEEEeeCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 67 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-----g~~VlvLE~G~~~~ 67 (557)
.+||||+|+||+.+|.+|.+ +.+|+|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 69999999999999999864 47999999987653
No 358
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.83 E-value=0.79 Score=45.54 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
+.|||+|..|+.+|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 999999988
No 359
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.70 E-value=0.86 Score=45.25 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=27.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+.|||+|..|+.+|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 7899999999999999999 9999999983
No 360
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=84.54 E-value=0.93 Score=50.03 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 69999999999999999999 9999999998754
No 361
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.54 E-value=0.79 Score=45.70 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.|.|||+|..|+.+|..|++ |.+|.++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999 99999999864
No 362
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=0.65 Score=44.82 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=35.6
Q ss_pred CCCcccccccccCCCCCCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCC
Q 008675 15 APNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (557)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~ 64 (557)
+-|+.|+-..........| |||||+|-.|+.++.-|.+ | .|+.+++=-.
T Consensus 58 arN~aFfGee~m~kl~~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 58 ARNYAFFGEEGMEKLTNSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred HhHHhhhhhhHHHHhcCcE-EEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 3566666554333334444 8999999999999999999 7 5888886543
No 363
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.16 E-value=0.99 Score=49.09 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 369999999999999999999 999999999863
No 364
>PTZ00058 glutathione reductase; Provisional
Probab=83.92 E-value=0.99 Score=48.95 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 369999999999999999999 999999999864
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.72 E-value=0.99 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.++|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999 99999999764
No 366
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=83.72 E-value=1.1 Score=47.64 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 69999999999999999999 9999999998653
No 367
>PRK06116 glutathione reductase; Validated
Probab=83.57 E-value=1.1 Score=47.39 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 369999999999999999999 999999999864
No 368
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=83.38 E-value=1 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 469999999999999999999 999999998764
No 369
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.84 E-value=1.3 Score=39.31 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=25.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEE
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLL 60 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvL 60 (557)
--++|||+|..|.-.|..|.+ |.+|.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 359999999999999999988 9999999
No 370
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.82 E-value=0.98 Score=36.81 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
..-++|||+|..|..-+..|.+ |.+|.|+..-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3569999999999999999999 9999998665
No 371
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=82.72 E-value=0.81 Score=47.49 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.8
Q ss_pred cchHHHHHhhhc-CCeEEEEeeCCCCCCC
Q 008675 42 TAGCPLAATLSQ-NASVLLLERGGSPYGN 69 (557)
Q Consensus 42 ~aG~~~A~~Lae-g~~VlvLE~G~~~~~~ 69 (557)
.||+++|++|++ |.+|+|||+.+...+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 489999999999 9999999999877653
No 372
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=82.69 E-value=1.3 Score=46.77 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 69999999999999999999 9999999998643
No 373
>PRK04148 hypothetical protein; Provisional
Probab=82.68 E-value=1.3 Score=37.94 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=27.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
--+++||.| .|..+|..|++ |..|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 88888999999 999999998753
No 374
>PLN02546 glutathione reductase
Probab=82.65 E-value=1.2 Score=48.26 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 379999999999999999999 9999999998643
No 375
>PRK13748 putative mercuric reductase; Provisional
Probab=82.39 E-value=1.2 Score=48.66 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.++|||+|..|+-+|..|++ |.+|.|+|++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 69999999999999999999 99999999853
No 376
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.34 E-value=1.2 Score=43.83 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+.|||+|..|..+|..|++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999 99999998753
No 377
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.90 E-value=1.3 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=27.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
--++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 359999999999999999999 999999974
No 378
>PRK14694 putative mercuric reductase; Provisional
Probab=81.63 E-value=1.5 Score=46.61 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=29.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.++|||+|..|+-+|..|++ |.+|.|++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 369999999999999999999 99999999753
No 379
>PRK14727 putative mercuric reductase; Provisional
Probab=81.48 E-value=1.3 Score=47.18 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=28.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
-.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 369999999999999999999 9999999975
No 380
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.29 E-value=1.3 Score=43.63 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.|||+|..|..+|..|++ |.+|.++++..
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 7899999999999999999 99999998864
No 381
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.68 E-value=1.6 Score=43.65 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+.|||+|..|+-.|..++. |++|.+.+.-+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999999764
No 382
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.54 E-value=1.4 Score=46.60 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=28.5
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
|.|||.|.+|..+|.-|.+ |.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 7999999999999999999 999999998754
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.44 E-value=1.6 Score=42.96 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-|.|||+|..|.-.|..|+. |++|.++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48899999999999999999 99999999875
No 384
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=80.38 E-value=3.7 Score=43.69 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=31.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~~ 67 (557)
+++|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 48999999999999999999 99999999987654
No 385
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.11 E-value=1.6 Score=43.92 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=27.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+.|||+|..|+.+|..|++ |.+|.++.|.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7899999999999999999 9999999874
No 386
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.06 E-value=1.8 Score=37.11 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
.-++|||+|.-|+.+|..|+. |. ++.|++....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 348999999999999999999 85 8999988754
No 387
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.97 E-value=1.6 Score=44.18 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=28.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.+.|||+|..|+..|..|++ |.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 38999999999999999999 9999999985
No 388
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.87 E-value=1.7 Score=44.32 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCe-EEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G~ 64 (557)
.++|||+|..|+-+|..|++ |.+ |.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999999999999999988 876 99999864
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.84 E-value=1.5 Score=46.23 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=29.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.++|||+|..|..+|..|++ |.+|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 458999999999999999999 99999998864
No 390
>PLN02487 zeta-carotene desaturase
Probab=79.78 E-value=3.6 Score=44.67 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=43.1
Q ss_pred hhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHHH
Q 008675 205 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (557)
Q Consensus 205 ~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~lL 273 (557)
...++.|.+|++++.|++|+.+.+.++..+++||++.+ ++....+ .++.||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 34567899999999999999985421122589999852 2332233 368999999976555544
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=79.53 E-value=1.8 Score=41.83 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C-------CeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g-------~~VlvLE~G 63 (557)
...+++|||+|..|++.|..+.+ . .+|.|++--
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 45689999999999999977666 3 477777544
No 392
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.36 E-value=2.1 Score=42.35 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+.|||+|..|..+|..|+. |.+|.+.++-.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998753
No 393
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=78.97 E-value=2 Score=45.77 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.2
Q ss_pred ccEEEECCCcchHHHHHh---hhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAAT---LSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~---Lae-g~~VlvLE~G~~~ 66 (557)
-.++|||+|..|+-+|.. |.+ |.+|.|+|+++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 359999999999999864 445 8999999998754
No 394
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.91 E-value=1.9 Score=37.10 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=27.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCe-EEEEeeC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG 63 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G 63 (557)
.--++|||+|-+|-.++..|.+ |.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4569999999999999999999 865 9998774
No 395
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=78.90 E-value=1.7 Score=46.37 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 59999999999999999999 9999999974
No 396
>PTZ00052 thioredoxin reductase; Provisional
Probab=78.55 E-value=1.8 Score=46.46 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 69999999999999999999 9999999874
No 397
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.42 E-value=2 Score=42.49 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+.|||+|..|..+|..|+. |.+|.++++-.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38899999999999999999 99999998754
No 398
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=78.36 E-value=2.4 Score=44.58 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~~ 66 (557)
-.|+|||+|.+|.-+|..|++ |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 479999999999999999999 9999999998754
No 399
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=78.22 E-value=2.1 Score=39.85 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=26.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEee
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~ 62 (557)
-++|||+|..|..-|..|.+ |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 59999999999999999999 999999964
No 400
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.80 E-value=1.9 Score=42.84 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=28.1
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+.|+|+|+.|+..|++|++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 7899999999999999999 988999888753
No 401
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.72 E-value=2.2 Score=43.13 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.|||+|.-|++.|.-||+ |+.|+.++.-.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6899999999999999999 99999998764
No 402
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=77.68 E-value=2.2 Score=41.41 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
...-|+|||.|..|+.+|..|++ | .++.|+|.-..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45679999999999999999999 8 68999997643
No 403
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=77.63 E-value=2.2 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=29.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~ 64 (557)
...-|.|||+|..|+.+|..|+. |. ++.|++...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35679999999999999999999 97 699988764
No 404
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.61 E-value=2.9 Score=37.45 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.7
Q ss_pred CCccEEEECCCc-chHHHHHhhhc-CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGT-AGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~-aG~~~A~~Lae-g~~VlvLE~G 63 (557)
....++|||+|- .|..+|..|.+ |.+|.++.|-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999995 69989999998 9899999875
No 405
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=77.38 E-value=2.4 Score=44.80 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=29.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.|+|||+|.+|+=+|..|++ +.+|.++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 369999999999999999999 99999999875
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.22 E-value=2.2 Score=43.74 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
..-+++|||+|..|..+|..|.. |.+|.++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 34679999999999999999999 9999999875
No 407
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.98 E-value=2.3 Score=39.35 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
-++|+|.|-.|..+|.+|.+ |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 49999999999999999999 9999998754
No 408
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=76.95 E-value=2.3 Score=44.55 Aligned_cols=33 Identities=33% Similarity=0.726 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc---------------CCeEEEEeeCCCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGSP 66 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae---------------g~~VlvLE~G~~~ 66 (557)
.++|||+|+.|+-+|..|++ +.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 69999999999999998874 5789999998653
No 409
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=76.61 E-value=2.2 Score=42.99 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
...-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45679999999999999999999 86 8999988754
No 410
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.52 E-value=2.8 Score=42.18 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=28.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
-+.|||+|..|..+|..|++ |.+|.++.+.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 48999999999999999999 9999999885
No 411
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=76.29 E-value=1.5 Score=44.58 Aligned_cols=30 Identities=33% Similarity=0.759 Sum_probs=0.0
Q ss_pred EEEECCCcchHHHHHhhh--------------c-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLS--------------Q-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~La--------------e-g~~VlvLE~G~ 64 (557)
+|||||||.|.-.|.+|+ . ..+|.+||+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.88 E-value=2.8 Score=40.85 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
...-+|+|+|+|..|.-+|.-+.- |.+|.+||...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 456789999999999999988888 99999999974
No 413
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.69 E-value=2.8 Score=42.81 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~ 64 (557)
+++|||+|-.|.++|..|++ + .+|++..|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999 6 8999999874
No 414
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.44 E-value=3.1 Score=41.52 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+.|||+|..|+.+|..|++ |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998753
No 415
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=75.37 E-value=2.9 Score=36.28 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEeeCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~~ 66 (557)
++|||.|.-|+.+|..|+. |. ++.+++.....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 7899999999999999999 85 79999887543
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.15 E-value=2.5 Score=41.47 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+.|||+|..|+.+|..|+. |.+|+++|.-+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998653
No 417
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=74.83 E-value=2.9 Score=37.47 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..-|+|+|+|.+|.-+|.-|.. |.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4679999999999999999888 99999998753
No 418
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.27 E-value=3 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
...-|+|||+|.-|+.+|..|+. |. ++.|++....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 45679999999999999999999 86 8999998643
No 419
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=73.84 E-value=2.8 Score=39.65 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=28.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC---eEEEEeeCCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGS 65 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~---~VlvLE~G~~ 65 (557)
--++|+|+|.+|..+|..|.+ |. +|.|++|-+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 359999999999999999998 85 5999999753
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.71 E-value=3.2 Score=41.26 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=26.1
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEee
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLER 62 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~-~VlvLE~ 62 (557)
+.|||+|..|+.+|..|+. |. +|+++|.
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7899999999999999999 75 8999998
No 421
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.42 E-value=3.2 Score=41.59 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+.|||+|..|+.+|..|++ |..|.++.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 99999998853
No 422
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.21 E-value=3.6 Score=37.13 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=27.6
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
|.|||+|..|+.+|..|+. |. ++.+++....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7899999999999999999 86 6999988653
No 423
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=73.14 E-value=3.3 Score=40.92 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|.|||+|..|..+|..|+. |.+|.+.++..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999998764
No 424
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=72.96 E-value=3.8 Score=35.27 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
.+|+|+|..+..+|.-++. |++|.|++--+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999998888 999999998754
No 425
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=72.92 E-value=3.6 Score=42.91 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.|||.|..|+.+|..|++ |.+|.++++..
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 7899999999999999999 99999998764
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.71 E-value=3.7 Score=42.47 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.|+|+|.|+.|..+|..|.. |.+|+++|.-+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 469999999999999999988 99999998754
No 427
>PLN02612 phytoene desaturase
Probab=71.27 E-value=6.3 Score=42.99 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=35.2
Q ss_pred cCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCC
Q 008675 207 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 266 (557)
Q Consensus 207 ~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa 266 (557)
.++.|.+|++++.|++|..++++ ++++|++. +|+. +. ++.||+|+..
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~~-----ad~VI~a~p~ 364 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--VE-----GDVYVSATPV 364 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--EE-----CCEEEECCCH
Confidence 34568999999999999987653 67788875 5643 33 6889998753
No 428
>PRK07233 hypothetical protein; Provisional
Probab=71.05 E-value=6.2 Score=41.19 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=38.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchHH
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~l 272 (557)
+...++..|.+|+++++|++|..+++ +++++.. +++. +. ++.||+|+..-..+.|
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~~-----ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--ED-----FDAVISTAPPPILARL 258 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--EE-----CCEEEECCCHHHHHhh
Confidence 44455667899999999999998765 5655542 3432 33 6889999986544444
No 429
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=70.59 E-value=4.1 Score=43.14 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~ 64 (557)
-.++|||+|..|+-+|..|++ |. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999998 86 899999864
No 430
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=70.52 E-value=4 Score=40.15 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G 63 (557)
-.++|||+|-+|..+|..|++ |. +|.|+.|-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999998 85 79999875
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=70.51 E-value=3.8 Score=43.78 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-|-|||+|..|.-+|..|+. |++|.|.|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999999 99999998864
No 432
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.51 E-value=4.4 Score=38.09 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.7
Q ss_pred EEEEC-CCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIG-GGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVG-sG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+.||| +|..|..+|..|++ |.+|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987653
No 433
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.38 E-value=4.2 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
-...-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 345679999999999999999999 85 8999988653
No 434
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=70.33 E-value=4.2 Score=42.41 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+.|||.|..|+.+|..|++ |.+|.++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 38999999999999999999 99999998754
No 435
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.90 E-value=4 Score=40.65 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=27.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
.+.|||+|..|..+|.+|++ |.+|.+..+.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999999999 9999998875
No 436
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.89 E-value=4.5 Score=40.31 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.6
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~ 64 (557)
.+.|||+|..|+++|..|+. | ..|.++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999999 7 5899999864
No 437
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.83 E-value=4.2 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
--++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999 99999998854
No 438
>PRK08328 hypothetical protein; Provisional
Probab=69.27 E-value=4.5 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=28.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~ 64 (557)
...-|+|||+|..|+.+|..|+. | .++.|++...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35679999999999999999999 8 4788886543
No 439
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.22 E-value=4.5 Score=38.33 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=29.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~ 64 (557)
...-|+|||.|..|+.+|..|+. |. ++.|++...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45679999999999999999999 84 788887654
No 440
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=69.09 E-value=5.6 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 66 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~ 66 (557)
-....|+|||+|..|+.+|..|+. | .++.+++.....
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 345789999999999999999999 8 588888876543
No 441
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.62 E-value=5.4 Score=39.18 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=29.0
Q ss_pred EEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 67 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~~ 67 (557)
|+|||+|.-|+.+|..|+. | .++.+++.+....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~ 36 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY 36 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 7899999999999999999 8 5899999886543
No 442
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=68.35 E-value=5 Score=37.50 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
...-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 45679999999999999999999 85 6999988643
No 443
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=68.22 E-value=5.1 Score=39.54 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.8
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+-|||+|..|.-.|..++. |++|.+.+...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999999 89999999873
No 444
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=68.14 E-value=5.2 Score=39.84 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhhc-C--CeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~ 64 (557)
+.|||+|..|.++|+.|++ | ..|.|+++-.
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7899999999999999999 7 4799999854
No 445
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.63 E-value=4.8 Score=42.51 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.++|||+|..|..+|..|.+ |..|.++|+..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999998 99999999854
No 446
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.62 E-value=4.9 Score=45.12 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-|.|||+|..|.-+|..++. |++|.|+|.-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 447
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=67.35 E-value=5.2 Score=43.45 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=31.2
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 67 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~~~ 67 (557)
..-|.|||+|.-||.+|..|+. | .++.+++.+....
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~ 375 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSY 375 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECC
Confidence 4569999999999999999999 8 5899999887543
No 448
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=67.25 E-value=5 Score=39.57 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCe-EEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~-VlvLE~G~ 64 (557)
--++|+|+|-+|.++|..|++ |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 358999999999999999998 875 99998753
No 449
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=67.18 E-value=6 Score=37.76 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-----------eEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-----------SVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-----------~VlvLE~G~ 64 (557)
....|+|||+|..|+.++..|++ |. ++.|++...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45789999999999999999997 62 666666543
No 450
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=67.14 E-value=6.5 Score=30.66 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.6
Q ss_pred ccEEEECCCcchHHHHHhhhc--CCeEEEEee
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ--NASVLLLER 62 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae--g~~VlvLE~ 62 (557)
-.++|+|+|..|..+|..|.+ +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 459999999999999999998 478999888
No 451
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=67.10 E-value=6.1 Score=36.68 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCCC
Q 008675 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (557)
Q Consensus 29 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~~ 65 (557)
+.+.--|-|||+|..|+-+|.-.+. |+.|.|.++...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 3445569999999999999999888 999999988753
No 452
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=66.89 E-value=5.1 Score=44.90 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-|.|||+|+.|.-+|..++. |+.|.|+|.-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999864
No 453
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=66.82 E-value=5.7 Score=38.06 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=30.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
....|+|||.|.-|+.+|..|+. | .++.|++....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 46789999999999999999999 8 48888887643
No 454
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=66.10 E-value=6.3 Score=36.40 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
...-|+|||.|.-|+.+|..|+. |. ++.+++....
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 34679999999999999999999 84 7999987643
No 455
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.88 E-value=6.5 Score=42.81 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=30.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+-.+||+|.|.-|-.+|.+|.+ |.+|+++|+-+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4579999999999999999998 99999999864
No 456
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=65.87 E-value=5.6 Score=42.65 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=28.1
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
|-|||+|..|.-+|..|+. |+.|.|.|+..
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999 99999999864
No 457
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=65.76 E-value=6.6 Score=31.14 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.1
Q ss_pred EEEECCCcchHHHHHhhhc-C---CeEEEE-eeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N---ASVLLL-ERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g---~~VlvL-E~G~ 64 (557)
+.|||+|-.|..++..|.+ | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5789999999999999999 8 899976 7764
No 458
>PLN02712 arogenate dehydrogenase
Probab=65.32 E-value=8.2 Score=42.83 Aligned_cols=31 Identities=39% Similarity=0.381 Sum_probs=27.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
--+.|||.|..|..+|..|.+ |.+|+++++.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 359999999999999999999 9999998775
No 459
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=65.28 E-value=6.3 Score=37.45 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=26.6
Q ss_pred EEEECCCcchHHHHHhhhc-C-CeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~ 64 (557)
|+|||+|.-|+.++..|+. | .++.|++...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999 8 4788888764
No 460
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.19 E-value=6.4 Score=40.63 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=29.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.--++|||.|..|..+|..|.. |.+|.++|.-+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3469999999999999999998 99999999764
No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.04 E-value=5.6 Score=38.96 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=26.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+.|||.|..|..+|..|++ |.+|.++++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7899999999999999999 9999999874
No 462
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=64.86 E-value=6.9 Score=36.11 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~ 64 (557)
...-|+|||+|.-|+.+|..|+. |. ++.+++-..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35679999999999999999999 85 788888764
No 463
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=64.84 E-value=6.1 Score=42.29 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-+-|||+|..|...|..|+. |.+|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999998853
No 464
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=64.62 E-value=6.5 Score=41.62 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.4
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g--~~VlvLE~G~ 64 (557)
.+.|||+|..|+++|..||+ | .+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 7899998754
No 465
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.61 E-value=5.6 Score=41.92 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-++|+|+|..|..+|..|++ |.+|++.++..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 38999999999999999999 99999998764
No 466
>PRK06223 malate dehydrogenase; Reviewed
Probab=64.11 E-value=6.9 Score=38.92 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CC-eEEEEeeC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 63 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G 63 (557)
-+.|||+|..|..+|..|+. |. .|.|++.-
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 48999999999999999998 65 89999983
No 467
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=63.92 E-value=5.9 Score=39.29 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=26.5
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~ 64 (557)
+.|||+|..|..+|..|+. +. .|.|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999987 65 999999864
No 468
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.76 E-value=16 Score=37.23 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=39.6
Q ss_pred CCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCCeeEEeeecCCceEEEEccCCc-CchHHH
Q 008675 208 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGAL-GSPQLL 273 (557)
Q Consensus 208 ~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~v~~~~~aa~~VIlaaGa~-~sp~lL 273 (557)
..+++.++++++|.+++-.+++ + .-+.+.. ..|+..++. .+.||||+|-= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g----~-~~l~~~~~~~~~~~t~~-----~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDG----R-YRLTLRHHETGELETVE-----TDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCCCc----e-EEEEEeeccCCCceEEE-----eeEEEEecccccCCchhh
Confidence 3679999999999999887763 4 4455543 246666665 69999999953 345444
No 469
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=63.65 E-value=8.8 Score=37.92 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=42.7
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCcCchH
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~~sp~ 271 (557)
..++.|..++++-+|.+..+.++ +++.|.++ ++....+. ++.+|||+|++-|--
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~tr--n~~diP~~-----a~~~VLAsGsffskG 320 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTR--NHADIPLR-----ADFYVLASGSFFSKG 320 (421)
T ss_pred HHHHcCceEecCCceeeeeeeCC-----eEEEEEec--ccccCCCC-----hhHeeeecccccccc
Confidence 34567899999999999999887 99999987 44444443 799999999987653
No 470
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=63.58 E-value=6.2 Score=42.54 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=27.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
--++|+|+|-+|..+|+.|++ |.+|.++.|-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999 9999999763
No 471
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=63.39 E-value=7 Score=40.32 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=27.2
Q ss_pred EEEECCCcchHHHHHhhhcCCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQNASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Laeg~~VlvLE~G~ 64 (557)
+.|||.|..|+.+|..|+.|++|.++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 789999999999998887799999999865
No 472
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=63.25 E-value=56 Score=33.51 Aligned_cols=134 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred cccCCCCCCccEEEECCCcchHHHHHhhhc---CCeEEEEeeCCCCCCCCCccchhhhhhccCCCCCCCcCccccCCCcc
Q 008675 24 ATAAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGV 100 (557)
Q Consensus 24 ~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (557)
|.........-+.|||+|++..+++..... +.+||+|-.-+..+
T Consensus 170 P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP--------------------------------- 216 (659)
T KOG1346|consen 170 PSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP--------------------------------- 216 (659)
T ss_pred CccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------------------------------
Q ss_pred cccCcceecccccccCceeecCCcc---hhccCCCChhhhhhhhhhhhhhhccCCCCCchhHHHHHHHHHcCCCCCCCCC
Q 008675 101 INSRARVLGGGSCLNAGFYTRAAPY---YVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFT 177 (557)
Q Consensus 101 ~~~~g~~lGG~s~~n~~~~~r~~~~---~~~~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 177 (557)
|+|++-. | |..+. ...+++-+.++++-.
T Consensus 217 ------------------YmRPPLSKELW-----~~~dp--------------------------n~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 217 ------------------YMRPPLSKELW-----WYGDP--------------------------NSAKKLRFKQWSGKE 247 (659)
T ss_pred ------------------ccCCCcchhce-----ecCCC--------------------------ChhhheeecccCCcc
Q ss_pred cCCCCceeeeeeEECCCCccccHHHhhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCc
Q 008675 178 YDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 257 (557)
Q Consensus 178 ~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa 257 (557)
.. -++..++...+... |+.+...|+-|+.+-.|++|..++. -|... +|.+...
T Consensus 248 Rs---------iffepd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y------- 300 (659)
T KOG1346|consen 248 RS---------IFFEPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY------- 300 (659)
T ss_pred ce---------eEecCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-------
Q ss_pred eEEEEccCC
Q 008675 258 NEIIVSAGA 266 (557)
Q Consensus 258 ~~VIlaaGa 266 (557)
++..+|+|.
T Consensus 301 dkcLIATG~ 309 (659)
T KOG1346|consen 301 DKCLIATGV 309 (659)
T ss_pred hheeeecCc
No 473
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=63.25 E-value=7.4 Score=39.30 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=26.6
Q ss_pred cEEEECCCcchHHHHHhhhc-C--------CeEEEEee
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-N--------ASVLLLER 62 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g--------~~VlvLE~ 62 (557)
.+.|||+|..|.++|..|++ | .+|.+..+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 37899999999999999999 8 89999877
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.91 E-value=7.3 Score=38.55 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..-+.|||.|.+|..+|..|.. |.+|.+.++-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999 99999998863
No 475
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=62.62 E-value=7 Score=40.62 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=28.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
--++|+|.|..|..+|.+|.. |.+|.+.|.-+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 459999999999999999998 99999998764
No 476
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=62.23 E-value=7.7 Score=37.80 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=27.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
-.++|+|+|.+|..+|..|++ |.+|.++.|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999999999999999999 9999999775
No 477
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=62.21 E-value=6.6 Score=44.21 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-|.|||+|..|.-+|..++. |+.|.++|...
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 48999999999999999999 99999999764
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.96 E-value=7.3 Score=41.11 Aligned_cols=32 Identities=41% Similarity=0.566 Sum_probs=29.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.+||||.|.-|..+|..|.+ |.+|+++|+-+
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 459999999999999999999 99999999764
No 479
>PRK06153 hypothetical protein; Provisional
Probab=61.80 E-value=8.3 Score=39.24 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
..-|.|||.|-.|+.+|..|++ | .++.|++....
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4579999999999999999999 7 58999887653
No 480
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=61.75 E-value=8.6 Score=33.29 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=26.8
Q ss_pred cEEEECC-CcchHHHHHhhhc-C--CeEEEEeeCC
Q 008675 34 DYIIIGG-GTAGCPLAATLSQ-N--ASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGs-G~aG~~~A~~Lae-g--~~VlvLE~G~ 64 (557)
.+.|||+ |.-|..+|..|.. + ..+.|++.-.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 3789999 9999999999988 4 5799998863
No 481
>PRK08223 hypothetical protein; Validated
Probab=61.72 E-value=8 Score=37.83 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=30.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 30 VSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 30 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
-...-|+|||.|--|+.+|..|+. | .++.|++....
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 346789999999999999999999 8 47888887643
No 482
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=61.69 E-value=10 Score=38.01 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
..-+.|||+|..|..+|+.|+. |. +|.|+|.-..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3469999999999999999988 85 8999998543
No 483
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=61.63 E-value=7.7 Score=36.78 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4569999999999999999999 84 8888877643
No 484
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=61.11 E-value=8.5 Score=35.30 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.1
Q ss_pred ccEEEECC-CcchHHHHHhhhc-CCeEEEEeeC
Q 008675 33 YDYIIIGG-GTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGs-G~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
-.++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999996 9999999999999 8999999664
No 485
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=60.94 E-value=22 Score=34.61 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=34.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCCeeEEeeecCCceEEEEccCCc
Q 008675 203 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 267 (557)
Q Consensus 203 ~l~~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~v~~~~~aa~~VIlaaGa~ 267 (557)
++..+.+.|++++.+++|+++..+++ ++ .|.+. ++ ..++. ++.||+|.|..
T Consensus 97 l~~~~~~~gv~~~~~~~v~~~~~~~~-----~~-~~~~~--~~-~~~~~-----a~~vv~a~G~~ 147 (295)
T TIGR02032 97 LAERAQEAGAELRLGTTVLDVEIHDD-----RV-VVIVR--GG-EGTVT-----AKIVIGADGSR 147 (295)
T ss_pred HHHHHHHcCCEEEeCcEEeeEEEeCC-----EE-EEEEc--Cc-cEEEE-----eCEEEECCCcc
Confidence 34455667999999999999988776 32 23332 22 22343 68999999964
No 486
>PRK08017 oxidoreductase; Provisional
Probab=60.92 E-value=8.8 Score=36.64 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=26.8
Q ss_pred EEEECC-CcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGs-G~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
++|.|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999998 99999987753
No 487
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.84 E-value=8.1 Score=34.32 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=25.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
.+-|||-|..|..+|.+|.+ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 36799999999999999999 99999998763
No 488
>PLN02494 adenosylhomocysteinase
Probab=60.45 E-value=8.9 Score=40.22 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=29.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
-.++|+|.|..|..+|.+|.. |.+|+++|+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999988 99999999864
No 489
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=59.99 E-value=9.2 Score=38.21 Aligned_cols=31 Identities=16% Similarity=0.456 Sum_probs=27.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC--eEEEEeeC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERG 63 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~--~VlvLE~G 63 (557)
.-+.|||+|..|..+|+.|+. +. .++|++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 469999999999999999998 75 79999984
No 490
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=59.87 E-value=8.5 Score=37.81 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=26.5
Q ss_pred EEEECCCcchHHHHHhhhc-C-CeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~ 64 (557)
|+|||+|.-|+-++..|+. | .++.|++-..
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 7899999999999999999 8 4788887654
No 491
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=59.81 E-value=9.3 Score=35.88 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEe
Q 008675 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLE 61 (557)
Q Consensus 32 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE 61 (557)
..-++|||||..+.-=+..|.+ |.+|.|+-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3459999999999888888888 99999983
No 492
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=59.80 E-value=8.1 Score=38.40 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=27.3
Q ss_pred EEEECCCcchHHHHHhhhc-C-CeEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g-~~VlvLE~G~~ 65 (557)
|+|||+|.-|+-+|..|+. | .++.|++....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 7899999999999999999 8 57888887653
No 493
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=59.67 E-value=8.2 Score=40.18 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhhc-CC------eEEEEeeCCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NA------SVLLLERGGS 65 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~------~VlvLE~G~~ 65 (557)
|+|||+|..||-++..|+. |. ++.|++....
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 7899999999999999999 86 7888877643
No 494
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=59.53 E-value=8.4 Score=41.06 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
..-.|+|+|+|++|+.++..+.. |.+|.++|...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35679999999999988888777 99999998764
No 495
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=59.39 E-value=9.1 Score=35.35 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=25.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G 63 (557)
+.|+|.|--|..+|.+|+. |+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 6899999999999999999 9999997443
No 496
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.35 E-value=8.9 Score=39.40 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEeeCCC
Q 008675 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (557)
Q Consensus 31 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvLE~G~~ 65 (557)
...-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 34679999999999999999999 85 7999987643
No 497
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=59.09 E-value=7.6 Score=38.24 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 35 vIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
+-|||.|..|..+|.+|++ |.+|.+.++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 6799999999999999999 99999987753
No 498
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=58.78 E-value=20 Score=38.02 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=42.0
Q ss_pred hcCCCCcEEEcCcEEEEEEEecCCCCCCeEEEEEEEe---C-------CCCeeEEeeecCCceEEEEccCCcCc-hHHHH
Q 008675 206 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 274 (557)
Q Consensus 206 ~~~~~n~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~---~-------~g~~~~v~~~~~aa~~VIlaaGa~~s-p~lLl 274 (557)
.+.+.|+++++++.+++|.-+++ ++++|++.. . .|+..++. ++.||+|.|..-. ..|+.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i~-----~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVLP-----ADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEEE-----CCEEEECcCcCCCchhhcc
Confidence 34557999999999999975444 888887652 1 23444554 7999999995443 34554
Q ss_pred hhc
Q 008675 275 LSG 277 (557)
Q Consensus 275 ~Sg 277 (557)
..|
T Consensus 408 ~~g 410 (471)
T PRK12810 408 QFG 410 (471)
T ss_pred ccC
Confidence 443
No 499
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=58.21 E-value=9.1 Score=42.94 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred cEEEECCCcchHHHHHhhh-c-CCeEEEEeeCC
Q 008675 34 DYIIIGGGTAGCPLAATLS-Q-NASVLLLERGG 64 (557)
Q Consensus 34 DvIIVGsG~aG~~~A~~La-e-g~~VlvLE~G~ 64 (557)
-|.|||+|..|.-+|..++ . |..|.++|...
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999988 7 99999999853
No 500
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=57.57 E-value=10 Score=39.76 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEeeCC
Q 008675 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (557)
Q Consensus 33 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvLE~G~ 64 (557)
--++|||.|..|..+|.+|.. |.+|++.|+.+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999988 99999998864
Done!