Query 008676
Match_columns 557
No_of_seqs 447 out of 3001
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 15:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 5.6E-92 1.2E-96 781.9 52.8 488 46-557 20-512 (613)
2 PLN03211 ABC transporter G-25; 100.0 7.6E-89 1.6E-93 763.9 60.6 491 45-557 33-561 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.6E-86 3.5E-91 744.1 55.4 469 67-556 36-514 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 6.1E-85 1.3E-89 782.5 54.1 493 48-556 26-574 (1394)
5 PLN03140 ABC transporter G fam 100.0 2.5E-84 5.4E-89 775.1 58.8 482 49-557 865-1370(1470)
6 PLN03140 ABC transporter G fam 100.0 1.4E-83 3.1E-88 768.5 53.9 496 48-557 128-692 (1470)
7 KOG0065 Pleiotropic drug resis 100.0 4.2E-85 9E-90 739.6 36.2 476 52-556 788-1277(1391)
8 TIGR00956 3a01205 Pleiotropic 100.0 9.4E-83 2E-87 763.7 58.2 480 50-557 758-1259(1394)
9 KOG0065 Pleiotropic drug resis 100.0 2.1E-75 4.5E-80 660.8 38.3 473 69-555 128-612 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.1E-54 2.3E-59 410.0 22.1 217 51-283 2-224 (240)
11 COG1135 AbcC ABC-type metal io 100.0 1.2E-51 2.5E-56 407.7 22.9 220 52-283 2-230 (339)
12 COG1125 OpuBA ABC-type proline 100.0 1.6E-51 3.5E-56 395.7 22.3 225 52-306 2-234 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 3.2E-50 6.9E-55 385.1 23.0 220 49-284 6-235 (263)
14 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-50 9.9E-55 389.1 23.8 204 51-271 3-207 (248)
15 COG1131 CcmA ABC-type multidru 100.0 1.1E-49 2.4E-54 407.3 27.0 221 51-288 4-230 (293)
16 COG1136 SalX ABC-type antimicr 100.0 1.8E-49 3.9E-54 384.5 25.2 209 52-273 2-220 (226)
17 COG1120 FepC ABC-type cobalami 100.0 8.7E-50 1.9E-54 393.9 22.7 219 51-283 2-227 (258)
18 COG3839 MalK ABC-type sugar tr 100.0 2.5E-49 5.4E-54 404.7 24.2 217 51-284 3-223 (338)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.2E-49 9.1E-54 387.2 24.5 218 50-284 3-227 (254)
20 COG3842 PotA ABC-type spermidi 100.0 2.9E-49 6.4E-54 406.2 21.7 218 50-283 4-225 (352)
21 COG1118 CysA ABC-type sulfate/ 100.0 3.8E-49 8.1E-54 389.0 20.4 220 50-284 1-227 (345)
22 COG4555 NatA ABC-type Na+ tran 100.0 4.5E-49 9.7E-54 366.9 17.4 217 52-284 2-222 (245)
23 COG3638 ABC-type phosphate/pho 100.0 1.1E-48 2.5E-53 373.5 20.5 222 50-284 2-237 (258)
24 COG2884 FtsE Predicted ATPase 100.0 5E-48 1.1E-52 357.1 20.5 211 52-278 2-220 (223)
25 PRK13537 nodulation ABC transp 100.0 3.6E-47 7.9E-52 391.7 28.2 217 51-284 7-227 (306)
26 TIGR02314 ABC_MetN D-methionin 100.0 7.9E-47 1.7E-51 393.4 28.3 219 52-283 2-229 (343)
27 TIGR03265 PhnT2 putative 2-ami 100.0 8.6E-47 1.9E-51 395.4 28.4 217 51-284 4-224 (353)
28 COG1117 PstB ABC-type phosphat 100.0 1.3E-47 2.8E-52 360.5 19.5 222 50-283 6-236 (253)
29 PRK11650 ugpC glycerol-3-phosp 100.0 9.7E-47 2.1E-51 395.4 28.1 217 51-283 3-223 (356)
30 PRK11432 fbpC ferric transport 100.0 1.6E-46 3.4E-51 392.8 28.4 216 51-283 6-225 (351)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-46 4.1E-51 393.5 28.3 216 51-283 5-227 (362)
32 COG1124 DppF ABC-type dipeptid 100.0 8E-47 1.7E-51 363.3 22.9 221 50-284 2-231 (252)
33 PRK13536 nodulation factor exp 100.0 3.2E-46 6.8E-51 389.2 29.3 219 49-284 39-261 (340)
34 cd03261 ABC_Org_Solvent_Resist 100.0 3.7E-46 8.1E-51 370.4 27.0 215 52-282 1-224 (235)
35 PRK10851 sulfate/thiosulfate t 100.0 4.3E-46 9.4E-51 390.1 28.6 220 50-283 1-225 (353)
36 PRK09452 potA putrescine/sperm 100.0 6.1E-46 1.3E-50 391.1 28.8 217 50-283 13-233 (375)
37 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-46 5.6E-51 368.5 23.2 217 51-284 3-228 (235)
38 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-45 2.4E-50 380.5 28.4 218 50-284 3-224 (303)
39 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.5E-45 3.3E-50 362.4 27.0 216 52-280 1-219 (220)
40 KOG0058 Peptide exporter, ABC 100.0 9.2E-47 2E-51 408.3 19.9 250 1-284 432-691 (716)
41 cd03265 ABC_DrrA DrrA is the A 100.0 1.3E-45 2.8E-50 362.9 25.8 213 52-281 1-218 (220)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-45 2.9E-50 361.0 25.6 209 52-277 1-213 (213)
43 PRK11607 potG putrescine trans 100.0 2.6E-45 5.6E-50 386.9 29.0 216 51-283 19-238 (377)
44 cd03296 ABC_CysA_sulfate_impor 100.0 2.6E-45 5.5E-50 365.4 27.3 219 50-282 1-224 (239)
45 PRK11153 metN DL-methionine tr 100.0 2.6E-45 5.7E-50 383.5 28.3 219 52-283 2-229 (343)
46 PRK11000 maltose/maltodextrin 100.0 2.6E-45 5.5E-50 386.9 28.3 216 51-283 3-222 (369)
47 cd03218 ABC_YhbG The ABC trans 100.0 2.8E-45 6E-50 363.3 26.1 214 52-282 1-220 (232)
48 TIGR03522 GldA_ABC_ATP gliding 100.0 3.7E-45 8E-50 376.3 27.9 216 51-284 2-221 (301)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 2.9E-45 6.4E-50 364.0 26.0 217 52-282 1-230 (236)
50 TIGR00960 3a0501s02 Type II (G 100.0 2.4E-45 5.3E-50 359.9 24.7 207 52-273 2-216 (216)
51 PRK13643 cbiO cobalt transport 100.0 5.2E-45 1.1E-49 372.9 27.7 231 52-295 2-247 (288)
52 PRK13637 cbiO cobalt transport 100.0 7.9E-45 1.7E-49 371.4 28.8 221 51-283 2-233 (287)
53 cd03258 ABC_MetN_methionine_tr 100.0 5.6E-45 1.2E-49 361.4 26.2 218 52-282 2-228 (233)
54 TIGR01188 drrA daunorubicin re 100.0 3.6E-45 7.8E-50 376.6 25.7 205 68-284 5-213 (302)
55 cd03301 ABC_MalK_N The N-termi 100.0 6.4E-45 1.4E-49 356.0 26.1 209 52-277 1-213 (213)
56 cd03263 ABC_subfamily_A The AB 100.0 5.9E-45 1.3E-49 358.0 25.3 215 52-282 1-219 (220)
57 COG3840 ThiQ ABC-type thiamine 100.0 1.6E-45 3.4E-50 338.0 19.7 213 52-283 2-218 (231)
58 PRK13634 cbiO cobalt transport 100.0 1.1E-44 2.5E-49 370.8 28.4 220 51-283 2-234 (290)
59 PRK13651 cobalt transporter AT 100.0 1.3E-44 2.7E-49 372.4 27.9 220 51-283 2-253 (305)
60 cd03269 ABC_putative_ATPase Th 100.0 7.6E-45 1.6E-49 354.8 25.0 209 52-277 1-210 (210)
61 cd03266 ABC_NatA_sodium_export 100.0 9.5E-45 2.1E-49 356.0 25.6 213 52-277 2-218 (218)
62 cd03260 ABC_PstB_phosphate_tra 100.0 6.8E-45 1.5E-49 359.4 24.5 214 52-281 1-226 (227)
63 COG1137 YhbG ABC-type (unclass 100.0 2.5E-46 5.4E-51 348.2 13.0 219 51-284 4-228 (243)
64 TIGR01186 proV glycine betaine 100.0 1E-44 2.3E-49 379.6 26.6 204 68-283 5-218 (363)
65 cd03256 ABC_PhnC_transporter A 100.0 1.1E-44 2.5E-49 360.8 25.6 218 52-282 1-232 (241)
66 PRK13631 cbiO cobalt transport 100.0 3.5E-44 7.7E-49 371.3 30.1 232 50-294 20-278 (320)
67 COG4988 CydD ABC-type transpor 100.0 8.1E-45 1.7E-49 386.6 25.9 248 1-284 285-543 (559)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.6E-45 1.9E-49 356.4 24.0 208 52-273 1-218 (218)
69 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-44 2.4E-49 356.4 24.7 212 52-282 1-219 (222)
70 PRK15079 oligopeptide ABC tran 100.0 2.8E-44 6.2E-49 373.4 28.7 224 50-283 7-250 (331)
71 PRK09493 glnQ glutamine ABC tr 100.0 2.6E-44 5.7E-49 358.2 27.3 215 52-282 2-223 (240)
72 COG2274 SunT ABC-type bacterio 100.0 3E-45 6.6E-50 409.9 22.5 249 2-284 438-696 (709)
73 PRK13646 cbiO cobalt transport 100.0 2.3E-44 5.1E-49 367.8 27.0 221 50-283 1-234 (286)
74 PRK11264 putative amino-acid A 100.0 3.1E-44 6.7E-49 359.8 27.2 216 51-282 3-231 (250)
75 PRK09536 btuD corrinoid ABC tr 100.0 2.1E-44 4.6E-49 381.7 27.4 219 51-283 3-227 (402)
76 COG4152 ABC-type uncharacteriz 100.0 2.6E-45 5.6E-50 350.7 18.3 220 51-287 2-222 (300)
77 PRK11831 putative ABC transpor 100.0 3.7E-44 8E-49 363.3 27.8 216 51-282 7-231 (269)
78 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.1E-44 6.7E-49 358.2 26.5 214 52-282 1-223 (242)
79 PRK13647 cbiO cobalt transport 100.0 5.4E-44 1.2E-48 362.9 28.8 216 51-282 4-225 (274)
80 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-44 3.5E-49 360.2 23.9 218 52-282 2-233 (243)
81 COG0411 LivG ABC-type branched 100.0 4.8E-45 1E-49 351.3 19.3 220 51-284 4-239 (250)
82 cd03268 ABC_BcrA_bacitracin_re 100.0 1.9E-44 4.2E-49 351.5 23.8 205 52-277 1-208 (208)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.3E-44 1.6E-48 354.2 28.0 214 52-283 2-220 (236)
84 PRK11248 tauB taurine transpor 100.0 7E-44 1.5E-48 358.4 28.1 212 52-280 2-216 (255)
85 TIGR02673 FtsE cell division A 100.0 3.2E-44 7E-49 351.3 25.0 205 52-272 2-214 (214)
86 PRK11174 cysteine/glutathione 100.0 1.5E-44 3.3E-49 404.3 25.5 245 2-284 316-572 (588)
87 COG4175 ProV ABC-type proline/ 100.0 7.2E-45 1.6E-49 359.0 20.0 223 50-284 3-254 (386)
88 PRK11629 lolD lipoprotein tran 100.0 1E-43 2.3E-48 352.4 28.1 215 51-279 5-229 (233)
89 PRK13641 cbiO cobalt transport 100.0 7.7E-44 1.7E-48 364.2 27.8 220 51-283 2-233 (287)
90 cd03292 ABC_FtsE_transporter F 100.0 4.3E-44 9.3E-49 350.3 24.8 206 52-273 1-214 (214)
91 PRK11124 artP arginine transpo 100.0 6.4E-44 1.4E-48 355.9 26.4 215 50-281 1-227 (242)
92 cd03264 ABC_drug_resistance_li 100.0 4.3E-44 9.2E-49 349.8 24.5 207 52-277 1-211 (211)
93 PRK10895 lipopolysaccharide AB 100.0 5.7E-44 1.2E-48 356.0 25.8 216 51-282 3-224 (241)
94 COG0444 DppD ABC-type dipeptid 100.0 5.1E-44 1.1E-48 358.1 25.2 227 52-284 2-243 (316)
95 PRK10619 histidine/lysine/argi 100.0 1.1E-43 2.4E-48 357.5 27.5 216 51-282 5-239 (257)
96 COG0410 LivF ABC-type branched 100.0 3.2E-44 6.9E-49 343.2 22.2 216 51-284 3-226 (237)
97 PRK10070 glycine betaine trans 100.0 9.4E-44 2E-48 376.5 28.1 202 70-283 42-253 (400)
98 cd03234 ABCG_White The White s 100.0 1.1E-43 2.5E-48 350.5 26.7 217 52-277 4-226 (226)
99 PRK13650 cbiO cobalt transport 100.0 1.1E-43 2.4E-48 361.5 27.3 218 51-283 4-228 (279)
100 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.9E-44 1.1E-48 362.4 24.4 214 53-283 26-249 (269)
101 PRK11247 ssuB aliphatic sulfon 100.0 8.1E-44 1.8E-48 358.1 25.8 207 51-280 12-219 (257)
102 TIGR00972 3a0107s01c2 phosphat 100.0 1.5E-43 3.3E-48 354.3 27.6 216 52-282 2-230 (247)
103 PRK11614 livF leucine/isoleuci 100.0 8.7E-44 1.9E-48 353.8 25.4 214 51-283 5-225 (237)
104 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-43 3.1E-48 353.3 26.4 216 52-282 3-229 (242)
105 PRK10908 cell division protein 100.0 1.6E-43 3.4E-48 348.6 26.3 207 52-274 2-216 (222)
106 cd03226 ABC_cobalt_CbiO_domain 100.0 4.8E-44 1E-48 348.0 22.3 201 53-274 1-205 (205)
107 PRK11308 dppF dipeptide transp 100.0 2.1E-43 4.5E-48 366.6 28.5 222 51-283 5-243 (327)
108 PRK09473 oppD oligopeptide tra 100.0 2.3E-43 4.9E-48 366.7 28.9 228 50-283 11-250 (330)
109 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-43 3.5E-48 355.2 26.8 215 52-282 1-234 (252)
110 PRK11300 livG leucine/isoleuci 100.0 1.6E-43 3.5E-48 355.7 26.6 218 51-282 5-241 (255)
111 PRK13649 cbiO cobalt transport 100.0 2.8E-43 6.1E-48 358.8 28.6 221 50-283 1-233 (280)
112 PRK13636 cbiO cobalt transport 100.0 2.4E-43 5.1E-48 359.9 27.9 217 51-283 5-230 (283)
113 PRK13638 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 358.1 27.2 215 52-283 2-224 (271)
114 TIGR01978 sufC FeS assembly AT 100.0 1.9E-43 4.1E-48 352.4 26.3 219 52-283 1-233 (243)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 2E-43 4.3E-48 347.4 26.0 209 52-274 2-220 (221)
116 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-43 2.4E-48 347.1 23.8 206 52-273 1-213 (213)
117 cd03225 ABC_cobalt_CbiO_domain 100.0 1.2E-43 2.7E-48 346.5 24.0 205 53-272 1-211 (211)
118 COG1132 MdlB ABC-type multidru 100.0 4.6E-44 1E-48 398.8 23.7 246 2-284 297-552 (567)
119 PRK10575 iron-hydroxamate tran 100.0 2.1E-43 4.5E-48 357.0 26.4 225 44-282 4-235 (265)
120 PRK11231 fecE iron-dicitrate t 100.0 1.7E-43 3.6E-48 355.7 25.5 218 51-282 2-225 (255)
121 cd03235 ABC_Metallic_Cations A 100.0 6.3E-44 1.4E-48 349.1 21.6 209 54-277 2-213 (213)
122 PRK14268 phosphate ABC transpo 100.0 3E-43 6.4E-48 354.5 27.1 216 51-282 12-240 (258)
123 PRK13548 hmuV hemin importer A 100.0 3.4E-43 7.3E-48 354.1 27.3 216 51-283 2-229 (258)
124 PRK11022 dppD dipeptide transp 100.0 3.7E-43 8E-48 364.8 28.2 227 51-283 3-242 (326)
125 PRK13644 cbiO cobalt transport 100.0 1.8E-43 3.8E-48 359.2 25.1 215 52-283 2-223 (274)
126 cd03257 ABC_NikE_OppD_transpor 100.0 3.5E-43 7.5E-48 347.1 26.1 214 52-277 2-228 (228)
127 TIGR03740 galliderm_ABC gallid 100.0 3.1E-43 6.7E-48 346.7 25.5 209 52-281 1-210 (223)
128 PRK14267 phosphate ABC transpo 100.0 4.7E-43 1E-47 351.9 27.2 220 51-283 4-236 (253)
129 TIGR03415 ABC_choXWV_ATP choli 100.0 3.6E-43 7.8E-48 369.7 27.2 204 68-283 36-253 (382)
130 PRK13635 cbiO cobalt transport 100.0 6.6E-43 1.4E-47 355.8 28.3 217 51-283 5-228 (279)
131 PRK09984 phosphonate/organopho 100.0 3.8E-43 8.3E-48 354.5 26.3 220 51-281 4-239 (262)
132 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-43 4.9E-48 349.2 24.0 211 52-282 1-219 (230)
133 PRK14247 phosphate ABC transpo 100.0 7.3E-43 1.6E-47 349.9 28.0 220 51-283 3-233 (250)
134 PRK13639 cbiO cobalt transport 100.0 8.5E-43 1.8E-47 354.4 28.8 216 52-283 2-225 (275)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.3E-43 7.2E-48 343.5 24.7 207 52-277 1-211 (211)
136 PRK14242 phosphate transporter 100.0 7.7E-43 1.7E-47 350.4 27.5 221 51-282 6-235 (253)
137 PRK13652 cbiO cobalt transport 100.0 5.4E-43 1.2E-47 356.2 26.5 217 51-283 3-226 (277)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 5E-43 1.1E-47 352.4 25.8 217 52-282 2-224 (256)
139 PRK14273 phosphate ABC transpo 100.0 7.2E-43 1.6E-47 350.8 26.9 218 51-283 7-237 (254)
140 cd03300 ABC_PotA_N PotA is an 100.0 7.9E-43 1.7E-47 346.0 26.7 214 52-282 1-218 (232)
141 TIGR02769 nickel_nikE nickel i 100.0 7.1E-43 1.5E-47 353.2 26.5 222 51-283 2-239 (265)
142 KOG0055 Multidrug/pheromone ex 100.0 5E-44 1.1E-48 406.5 20.1 251 2-284 316-576 (1228)
143 PRK14269 phosphate ABC transpo 100.0 9.4E-43 2E-47 348.4 27.0 223 51-283 2-229 (246)
144 PRK10584 putative ABC transpor 100.0 9.7E-43 2.1E-47 344.2 26.8 211 51-275 6-226 (228)
145 PRK14250 phosphate ABC transpo 100.0 6.1E-43 1.3E-47 348.7 24.9 210 51-282 3-219 (241)
146 TIGR00968 3a0106s01 sulfate AB 100.0 9.8E-43 2.1E-47 346.4 26.3 215 52-283 1-219 (237)
147 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.4E-43 5.1E-48 401.3 24.9 242 2-284 420-673 (686)
148 TIGR01257 rim_protein retinal- 100.0 1.3E-40 2.8E-45 401.7 49.9 222 49-286 926-1151(2272)
149 PRK15093 antimicrobial peptide 100.0 1.3E-42 2.9E-47 361.5 28.4 229 51-283 3-247 (330)
150 PRK14256 phosphate ABC transpo 100.0 1.6E-42 3.5E-47 347.9 28.0 222 51-282 4-234 (252)
151 PRK10253 iron-enterobactin tra 100.0 9.2E-43 2E-47 352.3 26.4 220 50-283 6-232 (265)
152 PRK13632 cbiO cobalt transport 100.0 1.1E-42 2.4E-47 352.9 26.5 218 50-283 6-230 (271)
153 PRK13648 cbiO cobalt transport 100.0 2.1E-42 4.6E-47 350.4 28.5 217 51-283 7-230 (269)
154 PRK14235 phosphate transporter 100.0 1.5E-42 3.3E-47 351.1 27.3 222 51-282 19-249 (267)
155 TIGR02142 modC_ABC molybdenum 100.0 8.9E-43 1.9E-47 366.1 26.4 207 56-283 4-220 (354)
156 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-42 3.1E-47 339.7 26.1 208 52-278 1-212 (213)
157 PRK10744 pstB phosphate transp 100.0 1.8E-42 3.9E-47 349.2 27.5 225 48-283 10-243 (260)
158 PRK14245 phosphate ABC transpo 100.0 2.1E-42 4.5E-47 346.7 27.7 221 51-283 3-233 (250)
159 PRK13640 cbiO cobalt transport 100.0 1.3E-42 2.9E-47 354.2 26.6 220 51-283 5-231 (282)
160 COG4525 TauB ABC-type taurine 100.0 8.7E-43 1.9E-47 323.1 22.8 219 52-285 4-225 (259)
161 PRK14274 phosphate ABC transpo 100.0 1.8E-42 4E-47 348.9 27.2 222 51-283 12-242 (259)
162 COG1123 ATPase components of v 100.0 9.2E-43 2E-47 372.3 26.1 227 51-284 5-244 (539)
163 PRK10771 thiQ thiamine transpo 100.0 1.6E-42 3.4E-47 343.8 25.8 213 52-283 2-218 (232)
164 PRK14237 phosphate transporter 100.0 2.7E-42 5.8E-47 349.3 27.9 223 49-282 18-249 (267)
165 PRK11144 modC molybdate transp 100.0 1.1E-42 2.4E-47 364.9 26.1 206 52-283 2-217 (352)
166 cd03299 ABC_ModC_like Archeal 100.0 2.4E-42 5.2E-47 343.2 26.8 213 52-282 1-217 (235)
167 PRK13645 cbiO cobalt transport 100.0 1.7E-42 3.7E-47 354.7 26.4 220 51-283 6-239 (289)
168 PRK14241 phosphate transporter 100.0 2.4E-42 5.3E-47 347.8 26.9 219 51-283 4-241 (258)
169 PRK14270 phosphate ABC transpo 100.0 3.2E-42 7E-47 345.5 27.5 219 50-283 3-234 (251)
170 PRK14239 phosphate transporter 100.0 2.8E-42 6E-47 346.1 27.0 222 51-283 5-235 (252)
171 PRK13549 xylose transporter AT 100.0 1.5E-42 3.3E-47 381.3 27.4 220 51-282 5-230 (506)
172 COG4559 ABC-type hemin transpo 100.0 7E-43 1.5E-47 327.9 21.0 218 52-284 2-230 (259)
173 COG4987 CydC ABC-type transpor 100.0 1.8E-43 3.9E-48 370.8 18.5 244 3-284 306-561 (573)
174 PRK10790 putative multidrug tr 100.0 2E-42 4.3E-47 387.5 28.2 242 2-284 310-563 (592)
175 PRK11176 lipid transporter ATP 100.0 1.2E-42 2.7E-47 388.5 26.5 246 2-284 310-567 (582)
176 TIGR01184 ntrCD nitrate transp 100.0 1.7E-42 3.7E-47 343.2 24.1 200 72-281 1-201 (230)
177 PRK14240 phosphate transporter 100.0 4.8E-42 1E-46 344.0 27.6 221 51-282 3-232 (250)
178 PRK15112 antimicrobial peptide 100.0 2.6E-42 5.6E-47 349.4 25.9 222 51-283 4-238 (267)
179 PRK10762 D-ribose transporter 100.0 2.1E-42 4.5E-47 379.9 27.1 218 51-282 4-228 (501)
180 PRK11160 cysteine/glutathione 100.0 5.2E-43 1.1E-47 390.5 22.6 246 2-284 306-562 (574)
181 PRK14244 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 345.0 26.6 222 51-282 5-235 (251)
182 PRK13633 cobalt transporter AT 100.0 3.1E-42 6.7E-47 351.2 26.2 219 51-283 4-232 (280)
183 cd03267 ABC_NatA_like Similar 100.0 2.1E-42 4.6E-47 343.8 24.4 198 68-277 33-236 (236)
184 PRK14262 phosphate ABC transpo 100.0 4.3E-42 9.2E-47 344.4 26.7 222 51-283 3-233 (250)
185 TIGR03375 type_I_sec_LssB type 100.0 1.1E-42 2.3E-47 396.4 24.9 248 2-285 430-689 (694)
186 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.7E-43 1.7E-47 398.6 23.7 251 2-284 438-700 (710)
187 TIGR00958 3a01208 Conjugate Tr 100.0 6.8E-43 1.5E-47 398.2 22.7 245 2-284 446-702 (711)
188 PRK11701 phnK phosphonate C-P 100.0 5.5E-42 1.2E-46 345.3 26.6 216 51-282 6-239 (258)
189 PRK14248 phosphate ABC transpo 100.0 7.4E-42 1.6E-46 346.2 27.6 219 50-283 20-251 (268)
190 PRK14272 phosphate ABC transpo 100.0 8.5E-42 1.8E-46 342.6 27.8 220 50-283 3-235 (252)
191 TIGR01193 bacteriocin_ABC ABC- 100.0 8.3E-43 1.8E-47 398.1 23.1 246 2-284 440-697 (708)
192 PRK14259 phosphate ABC transpo 100.0 4.4E-42 9.6E-47 348.0 25.9 221 50-283 12-252 (269)
193 cd03233 ABC_PDR_domain1 The pl 100.0 4.1E-42 8.9E-47 333.9 24.4 195 51-277 3-202 (202)
194 cd03297 ABC_ModC_molybdenum_tr 100.0 4.4E-42 9.5E-47 336.4 24.8 200 56-277 5-214 (214)
195 PRK14253 phosphate ABC transpo 100.0 7.3E-42 1.6E-46 342.5 26.2 221 51-282 3-231 (249)
196 PRK09700 D-allose transporter 100.0 4.1E-42 8.9E-47 378.4 26.7 218 51-282 5-232 (510)
197 PRK14249 phosphate ABC transpo 100.0 9.8E-42 2.1E-46 342.0 27.0 222 51-283 4-234 (251)
198 PRK14261 phosphate ABC transpo 100.0 1E-41 2.3E-46 342.2 27.1 222 51-283 6-236 (253)
199 COG4181 Predicted ABC-type tra 100.0 8E-43 1.7E-47 317.1 17.0 211 51-275 6-226 (228)
200 PRK13547 hmuV hemin importer A 100.0 6.5E-42 1.4E-46 347.0 25.6 220 52-282 2-242 (272)
201 PRK14271 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 345.3 28.2 223 50-283 20-250 (276)
202 PRK14255 phosphate ABC transpo 100.0 1.9E-41 4.1E-46 340.1 27.9 223 50-283 4-235 (252)
203 COG1123 ATPase components of v 100.0 4.7E-42 1E-46 366.9 24.9 226 49-284 278-519 (539)
204 KOG0055 Multidrug/pheromone ex 100.0 1.2E-42 2.5E-47 395.4 21.2 251 2-284 953-1213(1228)
205 PRK14238 phosphate transporter 100.0 1.7E-41 3.7E-46 344.1 27.6 222 50-282 23-253 (271)
206 PRK14236 phosphate transporter 100.0 1.6E-41 3.5E-46 344.5 27.5 221 51-282 25-254 (272)
207 TIGR03608 L_ocin_972_ABC putat 100.0 5.8E-42 1.3E-46 333.3 23.1 197 54-268 1-206 (206)
208 PRK14258 phosphate ABC transpo 100.0 1.9E-41 4.1E-46 342.0 27.6 223 51-283 7-244 (261)
209 PRK13642 cbiO cobalt transport 100.0 1.3E-41 2.8E-46 346.1 26.6 218 51-283 4-228 (277)
210 TIGR02982 heterocyst_DevA ABC 100.0 9.5E-42 2.1E-46 335.5 24.8 209 52-273 2-219 (220)
211 PRK15439 autoinducer 2 ABC tra 100.0 9.1E-42 2E-46 375.4 27.3 212 51-283 11-228 (510)
212 TIGR01842 type_I_sec_PrtD type 100.0 5.4E-42 1.2E-46 380.3 25.5 246 2-283 286-541 (544)
213 PRK14257 phosphate ABC transpo 100.0 1.8E-41 4E-46 352.1 27.6 224 50-283 79-312 (329)
214 PRK14260 phosphate ABC transpo 100.0 1.8E-41 3.9E-46 341.8 26.5 218 51-283 7-242 (259)
215 PRK14275 phosphate ABC transpo 100.0 2.6E-41 5.6E-46 345.3 27.7 221 48-283 36-269 (286)
216 PRK14251 phosphate ABC transpo 100.0 2.5E-41 5.3E-46 339.1 26.8 217 51-282 4-233 (251)
217 PRK14263 phosphate ABC transpo 100.0 3E-41 6.4E-46 340.5 27.5 223 48-283 5-244 (261)
218 PRK10418 nikD nickel transport 100.0 2.9E-41 6.4E-46 339.2 27.2 216 51-283 4-229 (254)
219 cd03252 ABCC_Hemolysin The ABC 100.0 4.1E-42 8.9E-47 341.7 20.7 212 52-283 1-224 (237)
220 PRK13657 cyclic beta-1,2-gluca 100.0 9.5E-42 2.1E-46 381.7 25.8 245 2-283 301-557 (588)
221 KOG0057 Mitochondrial Fe/S clu 100.0 1.9E-42 4.1E-47 363.4 18.8 212 51-284 351-574 (591)
222 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-41 4.6E-46 371.9 27.4 219 52-282 2-228 (500)
223 TIGR02770 nickel_nikD nickel i 100.0 1.7E-41 3.7E-46 336.0 24.1 204 71-283 1-214 (230)
224 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-41 6.1E-46 326.0 24.7 188 50-277 2-194 (194)
225 TIGR02323 CP_lyasePhnK phospho 100.0 3.8E-41 8.1E-46 338.1 26.4 217 51-283 3-237 (253)
226 CHL00131 ycf16 sulfate ABC tra 100.0 6.9E-41 1.5E-45 336.0 28.3 219 51-282 7-239 (252)
227 PRK14254 phosphate ABC transpo 100.0 4.3E-41 9.4E-46 343.4 26.9 216 50-282 38-267 (285)
228 PRK10419 nikE nickel transport 100.0 4.8E-41 1E-45 340.3 26.9 222 51-283 3-240 (268)
229 COG4598 HisP ABC-type histidin 100.0 1.2E-42 2.7E-47 318.0 13.5 217 51-283 6-240 (256)
230 PRK10261 glutathione transport 100.0 3.4E-41 7.4E-46 378.6 28.3 223 50-283 312-552 (623)
231 PRK10982 galactose/methyl gala 100.0 2.2E-41 4.7E-46 371.0 25.9 214 55-282 2-221 (491)
232 PRK14265 phosphate ABC transpo 100.0 5E-41 1.1E-45 341.2 26.3 223 48-283 17-257 (274)
233 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-41 2.5E-46 337.7 21.2 213 52-284 1-225 (234)
234 cd03232 ABC_PDR_domain2 The pl 100.0 3.7E-41 7.9E-46 324.6 23.8 186 51-277 3-192 (192)
235 PRK11288 araG L-arabinose tran 100.0 4.7E-41 1E-45 369.2 27.9 215 51-279 4-224 (501)
236 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-41 2.9E-46 379.3 23.6 245 2-283 299-555 (571)
237 PTZ00265 multidrug resistance 100.0 7E-42 1.5E-46 411.7 22.8 255 2-283 1128-1451(1466)
238 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-41 3.3E-46 386.8 24.5 246 2-284 423-680 (694)
239 PRK14266 phosphate ABC transpo 100.0 8.4E-41 1.8E-45 335.0 26.9 222 50-282 2-232 (250)
240 COG1129 MglA ABC-type sugar tr 100.0 3.6E-41 7.9E-46 357.9 25.0 216 50-279 7-229 (500)
241 PRK14246 phosphate ABC transpo 100.0 6.7E-41 1.4E-45 337.2 25.3 216 51-283 10-240 (257)
242 PRK15056 manganese/iron transp 100.0 5.9E-41 1.3E-45 340.4 25.1 218 51-282 6-228 (272)
243 PRK14243 phosphate transporter 100.0 7.1E-41 1.5E-45 338.3 25.5 220 51-283 10-247 (264)
244 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.7E-41 3.7E-46 337.5 20.6 214 52-284 1-226 (238)
245 PRK10789 putative multidrug tr 100.0 2.2E-41 4.8E-46 377.1 23.8 244 2-283 282-537 (569)
246 TIGR01257 rim_protein retinal- 100.0 4.9E-41 1.1E-45 405.3 28.4 223 50-287 1936-2162(2272)
247 cd03245 ABCC_bacteriocin_expor 100.0 3.5E-41 7.6E-46 331.2 21.9 207 52-277 3-220 (220)
248 COG4618 ArpD ABC-type protease 100.0 1.9E-41 4.2E-46 352.6 21.0 254 2-286 304-562 (580)
249 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.8E-41 1E-45 331.5 22.6 202 52-277 23-224 (224)
250 PRK03695 vitamin B12-transport 100.0 5.9E-41 1.3E-45 335.9 23.5 198 71-282 11-220 (248)
251 PRK13538 cytochrome c biogenes 100.0 9E-41 2E-45 324.8 24.1 197 52-268 2-202 (204)
252 PRK14264 phosphate ABC transpo 100.0 1.8E-40 3.9E-45 342.1 27.6 227 48-283 42-288 (305)
253 PRK13543 cytochrome c biogenes 100.0 9.1E-41 2E-45 327.2 24.3 200 51-270 11-212 (214)
254 PRK09580 sufC cysteine desulfu 100.0 1.9E-40 4.1E-45 331.9 26.8 218 52-282 2-233 (248)
255 PRK13546 teichoic acids export 100.0 3.5E-40 7.6E-45 332.8 28.9 215 50-284 3-232 (264)
256 TIGR01192 chvA glucan exporter 100.0 5.9E-41 1.3E-45 374.6 25.6 246 2-284 301-558 (585)
257 cd03254 ABCC_Glucan_exporter_l 100.0 3E-41 6.6E-46 333.7 20.5 212 51-283 2-225 (229)
258 PRK10261 glutathione transport 100.0 6.9E-41 1.5E-45 376.1 25.9 221 51-283 12-257 (623)
259 TIGR02204 MsbA_rel ABC transpo 100.0 4.5E-41 9.7E-46 375.5 24.1 248 2-283 303-562 (576)
260 TIGR03269 met_CoM_red_A2 methy 100.0 8.3E-41 1.8E-45 368.9 25.8 217 52-285 1-259 (520)
261 cd03231 ABC_CcmA_heme_exporter 100.0 8.4E-41 1.8E-45 324.4 22.7 194 52-268 1-198 (201)
262 PRK14252 phosphate ABC transpo 100.0 2.6E-40 5.6E-45 334.4 26.9 221 50-282 15-247 (265)
263 PRK10247 putative ABC transpor 100.0 9.3E-41 2E-45 329.7 23.0 207 51-278 7-221 (225)
264 cd03230 ABC_DR_subfamily_A Thi 100.0 9.3E-41 2E-45 316.5 21.9 169 52-273 1-173 (173)
265 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-40 3.1E-45 367.0 26.0 221 51-284 279-517 (520)
266 COG4604 CeuD ABC-type enteroch 100.0 4.1E-42 9E-47 319.1 11.5 218 52-284 2-225 (252)
267 PRK15134 microcin C ABC transp 100.0 1.4E-40 3E-45 367.8 25.3 222 51-283 275-514 (529)
268 PRK15134 microcin C ABC transp 100.0 2.4E-40 5.1E-45 365.9 27.1 224 51-283 5-245 (529)
269 TIGR02868 CydC thiol reductant 100.0 3.1E-41 6.7E-46 373.1 19.9 220 2-254 299-529 (529)
270 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-40 4.5E-45 321.4 23.3 186 52-286 1-195 (200)
271 cd03253 ABCC_ATM1_transporter 100.0 6.9E-41 1.5E-45 332.6 20.4 211 52-283 1-223 (236)
272 PRK09544 znuC high-affinity zi 100.0 2.7E-40 5.8E-45 331.6 24.1 201 51-282 4-207 (251)
273 COG4161 ArtP ABC-type arginine 100.0 7.4E-41 1.6E-45 301.4 17.7 215 50-280 1-226 (242)
274 TIGR02324 CP_lyasePhnL phospho 100.0 4.6E-40 9.9E-45 324.3 24.9 206 52-269 2-223 (224)
275 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.1E-40 4.5E-45 336.0 22.8 212 51-284 2-225 (275)
276 PRK13549 xylose transporter AT 100.0 2.2E-40 4.8E-45 364.3 24.9 221 51-282 259-492 (506)
277 PRK13539 cytochrome c biogenes 100.0 4E-40 8.6E-45 321.1 23.7 197 51-270 2-200 (207)
278 TIGR01189 ccmA heme ABC export 100.0 3.6E-40 7.7E-45 319.1 23.1 193 52-267 1-197 (198)
279 cd03229 ABC_Class3 This class 100.0 2.6E-40 5.7E-45 314.8 21.6 170 52-272 1-178 (178)
280 cd03244 ABCC_MRP_domain2 Domai 100.0 3.3E-40 7.2E-45 324.5 21.7 207 51-278 2-220 (221)
281 PRK09700 D-allose transporter 100.0 4E-40 8.6E-45 362.6 24.7 213 51-279 265-493 (510)
282 cd03215 ABC_Carb_Monos_II This 100.0 6.5E-40 1.4E-44 313.2 22.3 170 51-273 4-182 (182)
283 cd03248 ABCC_TAP TAP, the Tran 100.0 1.7E-40 3.6E-45 327.8 18.5 210 50-273 10-226 (226)
284 PRK13545 tagH teichoic acids e 100.0 1.5E-39 3.3E-44 348.9 27.0 212 51-284 21-232 (549)
285 COG4148 ModC ABC-type molybdat 100.0 5.6E-41 1.2E-45 326.3 14.0 193 74-284 16-218 (352)
286 PLN03232 ABC transporter C fam 100.0 7.4E-40 1.6E-44 397.1 27.0 249 2-284 1198-1458(1495)
287 PRK10938 putative molybdenum t 100.0 5.7E-40 1.2E-44 359.7 23.3 208 51-283 3-223 (490)
288 PRK13540 cytochrome c biogenes 100.0 1.1E-39 2.4E-44 316.3 22.6 192 52-266 2-197 (200)
289 PLN03130 ABC transporter C fam 100.0 1.1E-39 2.4E-44 396.1 28.1 249 2-284 1201-1461(1622)
290 COG3845 ABC-type uncharacteriz 100.0 9.8E-40 2.1E-44 340.4 23.4 214 51-278 4-223 (501)
291 TIGR02857 CydD thiol reductant 100.0 4.3E-40 9.3E-45 364.0 21.9 229 2-268 289-529 (529)
292 TIGR01166 cbiO cobalt transpor 100.0 9.5E-40 2.1E-44 314.0 21.0 175 68-254 4-187 (190)
293 cd03246 ABCC_Protease_Secretio 100.0 1.1E-39 2.4E-44 309.1 21.0 168 52-273 1-173 (173)
294 KOG0056 Heavy metal exporter H 100.0 7.7E-41 1.7E-45 344.4 13.9 246 6-284 508-761 (790)
295 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-39 2.4E-44 321.5 21.7 197 77-283 1-200 (223)
296 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-39 4E-44 326.7 23.4 213 50-283 18-242 (257)
297 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-39 3.1E-44 357.4 24.6 221 50-281 256-489 (500)
298 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-39 2.5E-44 310.3 20.7 174 52-277 1-178 (178)
299 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.8E-39 6.2E-44 314.9 23.5 197 51-279 6-207 (207)
300 PRK10762 D-ribose transporter 100.0 2.5E-39 5.3E-44 355.5 25.1 213 51-282 257-482 (501)
301 PRK11288 araG L-arabinose tran 100.0 1.8E-39 4E-44 356.6 23.5 214 51-282 257-483 (501)
302 COG4172 ABC-type uncharacteriz 100.0 5.2E-39 1.1E-43 325.8 24.6 228 47-284 272-516 (534)
303 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-39 5.3E-44 393.1 26.2 249 2-284 1248-1508(1522)
304 cd03250 ABCC_MRP_domain1 Domai 100.0 2.5E-39 5.5E-44 314.6 20.7 196 52-272 1-204 (204)
305 COG0396 sufC Cysteine desulfur 100.0 9.9E-39 2.1E-43 304.2 24.1 231 50-293 2-242 (251)
306 PRK10522 multidrug transporter 100.0 8.7E-39 1.9E-43 354.8 26.0 232 2-276 291-530 (547)
307 TIGR01187 potA spermidine/putr 100.0 6.2E-39 1.3E-43 333.3 23.1 185 87-283 1-189 (325)
308 cd03214 ABC_Iron-Siderophores_ 100.0 2.7E-39 5.9E-44 308.4 18.6 174 53-277 1-180 (180)
309 PRK10535 macrolide transporter 100.0 7.9E-38 1.7E-42 352.6 33.6 218 51-282 4-230 (648)
310 PTZ00265 multidrug resistance 100.0 6.2E-39 1.3E-43 386.3 26.1 244 2-271 350-655 (1466)
311 PRK15439 autoinducer 2 ABC tra 100.0 8E-39 1.7E-43 352.1 24.7 213 51-282 268-490 (510)
312 PTZ00243 ABC transporter; Prov 100.0 2E-38 4.4E-43 384.5 27.8 214 50-284 1307-1533(1560)
313 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.7E-38 5.9E-43 351.2 26.3 209 50-276 336-551 (555)
314 cd03216 ABC_Carb_Monos_I This 100.0 3E-38 6.4E-43 296.5 22.0 156 52-275 1-162 (163)
315 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.5E-38 1.8E-42 318.0 26.6 202 49-283 37-246 (282)
316 cd03228 ABCC_MRP_Like The MRP 100.0 2.1E-38 4.5E-43 299.8 20.4 166 52-272 1-171 (171)
317 cd03290 ABCC_SUR1_N The SUR do 100.0 3.1E-38 6.7E-43 310.0 22.1 199 53-272 2-218 (218)
318 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-38 6.5E-43 297.3 20.7 164 52-272 1-164 (166)
319 PRK15064 ABC transporter ATP-b 100.0 4.1E-38 9E-43 348.1 24.9 209 52-283 2-241 (530)
320 TIGR01271 CFTR_protein cystic 100.0 4.3E-38 9.3E-43 381.3 26.9 213 50-284 1216-1440(1490)
321 PRK13541 cytochrome c biogenes 100.0 5.8E-38 1.3E-42 303.0 22.0 190 52-265 2-192 (195)
322 COG4619 ABC-type uncharacteriz 100.0 1.5E-39 3.3E-44 294.8 9.5 192 67-273 14-212 (223)
323 PRK11819 putative ABC transpor 100.0 7.9E-38 1.7E-42 347.5 24.9 210 50-282 5-248 (556)
324 PRK15177 Vi polysaccharide exp 100.0 6.3E-38 1.4E-42 306.9 20.5 195 70-288 1-196 (213)
325 PRK10982 galactose/methyl gala 100.0 8E-38 1.7E-42 342.8 23.4 215 50-280 249-476 (491)
326 COG4172 ABC-type uncharacteriz 100.0 1.6E-37 3.4E-42 315.1 22.6 227 51-283 6-246 (534)
327 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.7E-37 5.9E-42 308.8 23.4 189 70-281 8-204 (246)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-37 4.2E-42 344.2 24.5 211 50-283 3-247 (552)
329 PRK15064 ABC transporter ATP-b 100.0 1.7E-37 3.8E-42 343.1 23.9 203 50-283 318-524 (530)
330 PRK10938 putative molybdenum t 100.0 1.3E-37 2.7E-42 341.2 22.2 214 50-277 259-485 (490)
331 COG4608 AppF ABC-type oligopep 100.0 1.6E-37 3.4E-42 305.3 20.5 190 51-284 4-199 (268)
332 COG1119 ModF ABC-type molybden 100.0 9E-38 2E-42 301.0 17.4 216 49-278 29-256 (257)
333 COG4674 Uncharacterized ABC-ty 100.0 1.2E-37 2.6E-42 288.9 15.4 219 50-283 4-234 (249)
334 COG4586 ABC-type uncharacteriz 100.0 1.2E-37 2.6E-42 302.6 15.9 207 69-287 37-249 (325)
335 PLN03232 ABC transporter C fam 100.0 6.4E-37 1.4E-41 371.5 26.0 237 2-283 583-827 (1495)
336 PLN03130 ABC transporter C fam 100.0 1.4E-36 3.1E-41 369.0 27.2 236 2-283 583-827 (1622)
337 PRK11819 putative ABC transpor 100.0 1.7E-36 3.8E-41 336.7 25.0 203 50-280 323-529 (556)
338 COG1101 PhnK ABC-type uncharac 100.0 6.7E-37 1.5E-41 288.2 18.1 217 52-277 2-231 (263)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.4E-36 5.1E-41 335.5 24.3 202 50-279 321-526 (552)
340 PRK13409 putative ATPase RIL; 100.0 2.1E-36 4.5E-41 336.3 23.8 199 50-280 339-538 (590)
341 TIGR00954 3a01203 Peroxysomal 100.0 1.7E-36 3.6E-41 342.3 21.7 198 51-269 451-652 (659)
342 COG5265 ATM1 ABC-type transpor 100.0 5.3E-37 1.2E-41 313.1 14.5 216 50-284 261-486 (497)
343 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.6E-36 7.9E-41 302.0 19.7 198 56-277 5-220 (255)
344 PRK10636 putative ABC transpor 100.0 7.2E-36 1.6E-40 336.0 23.4 202 50-283 311-516 (638)
345 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-35 2.5E-40 361.1 26.8 243 2-283 602-849 (1522)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-35 2.4E-40 273.4 19.7 144 52-272 1-144 (144)
347 COG4136 ABC-type uncharacteriz 100.0 4.3E-36 9.3E-41 267.6 15.0 193 51-258 2-198 (213)
348 cd03222 ABC_RNaseL_inhibitor T 100.0 1.9E-35 4.1E-40 280.4 20.4 156 55-283 4-162 (177)
349 COG1134 TagH ABC-type polysacc 100.0 5.4E-35 1.2E-39 282.2 22.8 219 51-288 3-240 (249)
350 PRK11147 ABC transporter ATPas 100.0 2.4E-35 5.2E-40 332.1 23.5 204 50-281 318-525 (635)
351 PRK10636 putative ABC transpor 100.0 3.1E-35 6.7E-40 330.8 23.5 207 52-282 2-234 (638)
352 KOG0059 Lipid exporter ABCA1 a 100.0 9.2E-36 2E-40 345.0 19.7 223 50-288 563-791 (885)
353 cd03238 ABC_UvrA The excision 100.0 3.9E-35 8.4E-40 277.9 19.9 159 67-274 6-167 (176)
354 PLN03073 ABC transporter F fam 100.0 1.3E-34 2.9E-39 327.5 25.2 206 50-284 507-714 (718)
355 COG4167 SapF ABC-type antimicr 100.0 4.7E-35 1E-39 268.9 17.1 222 52-284 5-239 (267)
356 PRK11147 ABC transporter ATPas 100.0 1.9E-34 4.1E-39 324.8 24.2 206 51-282 3-241 (635)
357 TIGR01271 CFTR_protein cystic 100.0 3.3E-34 7.3E-39 347.4 27.3 191 69-283 439-635 (1490)
358 COG4107 PhnK ABC-type phosphon 100.0 1.3E-34 2.9E-39 263.9 14.5 215 51-284 6-241 (258)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1E-33 2.2E-38 263.9 20.5 151 54-272 2-157 (157)
360 COG4133 CcmA ABC-type transpor 100.0 5.3E-34 1.1E-38 264.0 15.3 187 51-256 2-192 (209)
361 PRK13409 putative ATPase RIL; 100.0 7.2E-34 1.6E-38 316.0 18.7 188 57-271 79-287 (590)
362 KOG0054 Multidrug resistance-a 100.0 6.7E-33 1.5E-37 322.6 25.0 240 2-284 485-731 (1381)
363 COG0488 Uup ATPase components 100.0 3.6E-33 7.8E-38 303.7 19.5 207 51-281 3-237 (530)
364 KOG0054 Multidrug resistance-a 100.0 5.7E-33 1.2E-37 323.2 20.1 247 4-284 1104-1362(1381)
365 PTZ00243 ABC transporter; Prov 100.0 1.4E-32 3.1E-37 333.7 22.2 198 68-283 672-869 (1560)
366 PLN03073 ABC transporter F fam 100.0 2.6E-32 5.7E-37 308.8 17.8 215 48-281 174-428 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 2E-31 4.4E-36 263.3 20.7 190 67-277 6-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 6.2E-32 1.3E-36 245.7 12.8 209 51-270 4-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 2.8E-31 6E-36 241.1 12.9 132 72-223 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 5.7E-30 1.2E-34 256.7 20.4 195 69-279 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.1E-28 2.4E-33 262.7 22.3 214 49-280 261-486 (500)
372 COG0488 Uup ATPase components 100.0 9.5E-29 2.1E-33 269.1 21.1 203 48-282 318-523 (530)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 2.8E-29 6E-34 242.8 13.6 165 73-270 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 3.5E-30 7.7E-35 235.3 6.2 206 51-283 3-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.1E-27 2.3E-32 239.0 14.1 183 68-269 14-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.7E-29 1.5E-33 242.8 3.2 188 51-270 5-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.9E-27 8.4E-32 236.4 10.7 182 82-269 25-242 (251)
378 COG4615 PvdE ABC-type sideroph 99.9 3.6E-27 7.9E-32 239.0 10.1 234 2-277 291-530 (546)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 3E-26 6.5E-31 224.4 16.0 190 51-272 5-210 (213)
380 COG4178 ABC-type uncharacteriz 99.9 3.3E-26 7.1E-31 248.3 17.8 197 49-269 390-587 (604)
381 COG3845 ABC-type uncharacteriz 99.9 1.2E-25 2.6E-30 235.1 21.3 222 48-282 254-490 (501)
382 PRK00635 excinuclease ABC subu 99.9 8.3E-26 1.8E-30 269.9 21.5 137 139-283 759-905 (1809)
383 cd03240 ABC_Rad50 The catalyti 99.9 2.5E-26 5.5E-31 223.4 12.9 164 74-270 15-197 (204)
384 PRK00349 uvrA excinuclease ABC 99.9 6.3E-25 1.4E-29 252.8 22.2 125 143-283 792-926 (943)
385 COG4170 SapD ABC-type antimicr 99.9 1.1E-25 2.4E-30 211.3 10.7 229 52-284 4-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 5.8E-24 1.2E-28 244.4 22.7 125 142-282 789-923 (924)
387 KOG0927 Predicted transporter 99.9 2E-24 4.3E-29 227.0 13.3 215 49-282 73-307 (614)
388 COG1245 Predicted ATPase, RNas 99.9 1.1E-23 2.4E-28 217.2 17.2 190 49-269 340-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.3E-23 2.8E-28 203.4 13.9 168 72-272 12-192 (198)
390 KOG0927 Predicted transporter 99.9 4.3E-24 9.3E-29 224.5 11.1 203 48-279 386-591 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-23 2.3E-28 211.0 10.2 177 83-270 23-233 (247)
392 KOG0062 ATPase component of AB 99.9 4.2E-23 9.2E-28 216.0 9.7 201 49-280 78-281 (582)
393 KOG0060 Long-chain acyl-CoA tr 99.9 3.9E-22 8.4E-27 211.3 16.6 204 50-270 432-641 (659)
394 KOG2355 Predicted ABC-type tra 99.9 2.3E-21 5E-26 181.8 15.7 211 49-284 11-237 (291)
395 KOG0066 eIF2-interacting prote 99.9 1E-21 2.2E-26 201.1 13.4 191 49-270 584-776 (807)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.9 4.5E-21 9.9E-26 187.6 15.2 81 191-272 123-211 (213)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.7E-21 3.6E-26 189.0 11.3 146 72-277 17-172 (200)
398 KOG0062 ATPase component of AB 99.8 1.2E-20 2.6E-25 197.7 14.8 198 49-275 360-559 (582)
399 COG1245 Predicted ATPase, RNas 99.8 8.1E-21 1.7E-25 196.2 11.8 168 79-270 97-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 8.7E-20 1.9E-24 173.6 15.7 74 195-270 95-172 (178)
401 KOG0064 Peroxisomal long-chain 99.8 7E-20 1.5E-24 191.8 11.8 192 51-266 481-679 (728)
402 PRK00635 excinuclease ABC subu 99.8 7E-19 1.5E-23 211.0 21.5 128 142-284 1660-1796(1809)
403 COG0178 UvrA Excinuclease ATPa 99.8 6.6E-19 1.4E-23 193.0 19.0 128 142-284 783-919 (935)
404 cd03283 ABC_MutS-like MutS-lik 99.8 1.3E-19 2.7E-24 175.6 10.3 147 69-268 14-163 (199)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.1E-19 2.3E-24 179.1 7.7 153 68-278 16-175 (222)
406 COG2401 ABC-type ATPase fused 99.8 9.3E-19 2E-23 179.1 14.5 185 68-273 395-587 (593)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 5.8E-19 1.3E-23 165.5 11.0 75 194-270 77-155 (162)
408 cd03241 ABC_RecN RecN ATPase i 99.8 6.4E-18 1.4E-22 172.0 15.4 76 194-272 170-249 (276)
409 PRK00349 uvrA excinuclease ABC 99.7 8.7E-18 1.9E-22 194.0 14.8 136 140-283 434-584 (943)
410 TIGR00630 uvra excinuclease AB 99.7 1.5E-17 3.2E-22 191.8 15.5 135 141-283 433-582 (924)
411 cd03243 ABC_MutS_homologs The 99.7 2.9E-18 6.2E-23 166.6 6.8 155 74-281 21-176 (202)
412 cd03242 ABC_RecF RecF is a rec 99.7 8.4E-17 1.8E-21 163.3 16.9 76 193-273 182-269 (270)
413 KOG0066 eIF2-interacting prote 99.7 9.9E-18 2.1E-22 172.1 8.3 211 48-278 261-493 (807)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1E-16 2.3E-21 155.7 8.3 135 68-254 15-151 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.5E-16 7.5E-21 153.5 10.8 157 69-283 18-180 (216)
416 TIGR02858 spore_III_AA stage I 99.6 3.6E-15 7.8E-20 150.5 10.6 138 83-282 112-267 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.6 6.9E-15 1.5E-19 151.4 12.4 179 67-269 347-531 (592)
418 smart00534 MUTSac ATPase domai 99.5 4.8E-15 1E-19 142.0 5.0 80 193-275 60-141 (185)
419 PRK00064 recF recombination pr 99.5 3.7E-13 8.1E-18 142.0 18.8 77 193-273 272-359 (361)
420 PF01061 ABC2_membrane: ABC-2 99.5 1.3E-15 2.8E-20 146.8 -0.1 170 384-556 1-172 (210)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 3.8E-14 8.3E-19 139.2 6.5 88 168-269 121-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 6.9E-13 1.5E-17 129.9 12.4 128 71-254 18-154 (213)
423 TIGR01069 mutS2 MutS2 family p 99.4 1.2E-13 2.6E-18 158.0 7.8 128 75-254 314-445 (771)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 2E-13 4.4E-18 118.0 6.4 72 69-152 2-78 (107)
425 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.4E-12 2.9E-17 128.4 9.2 138 69-262 18-160 (222)
426 KOG0063 RNAse L inhibitor, ABC 99.4 1.7E-12 3.6E-17 134.0 9.1 172 80-270 98-288 (592)
427 PTZ00132 GTP-binding nuclear p 99.3 1.3E-12 2.7E-17 127.9 7.3 44 199-242 157-205 (215)
428 cd01128 rho_factor Transcripti 99.3 3.4E-12 7.5E-17 127.5 9.3 172 77-273 11-211 (249)
429 TIGR00634 recN DNA repair prot 99.3 3.5E-12 7.6E-17 142.3 9.7 77 193-272 439-519 (563)
430 PRK07721 fliI flagellum-specif 99.3 1.8E-11 3.9E-16 131.3 13.5 172 68-281 145-340 (438)
431 PRK00409 recombination and DNA 99.3 2.4E-12 5.2E-17 147.6 6.3 81 193-276 389-470 (782)
432 PRK08533 flagellar accessory p 99.3 3.1E-11 6.7E-16 119.7 13.1 150 78-269 20-184 (230)
433 PRK10869 recombination and rep 99.3 1E-11 2.3E-16 137.7 10.6 77 193-272 429-509 (553)
434 TIGR00618 sbcc exonuclease Sbc 99.3 1.2E-11 2.7E-16 147.3 11.3 80 191-271 947-1036(1042)
435 COG0178 UvrA Excinuclease ATPa 99.3 5E-11 1.1E-15 131.8 14.2 137 140-284 426-577 (935)
436 PHA02562 46 endonuclease subun 99.3 8.7E-12 1.9E-16 139.3 8.0 79 191-273 465-555 (562)
437 cd01124 KaiC KaiC is a circadi 99.2 7E-11 1.5E-15 112.6 12.7 146 84-269 1-163 (187)
438 PF13304 AAA_21: AAA domain; P 99.2 3.3E-11 7.2E-16 118.2 9.3 63 192-254 234-299 (303)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.2 7.2E-11 1.6E-15 115.9 11.3 134 68-254 16-153 (218)
440 PRK13695 putative NTPase; Prov 99.2 1.8E-11 3.8E-16 116.0 4.6 78 193-276 77-156 (174)
441 PRK03918 chromosome segregatio 99.1 1.6E-10 3.4E-15 135.9 9.8 77 191-269 785-867 (880)
442 COG3910 Predicted ATPase [Gene 99.1 1.5E-09 3.3E-14 101.5 13.1 62 193-255 128-189 (233)
443 PRK10246 exonuclease subunit S 99.1 3.7E-10 7.9E-15 134.3 11.2 79 191-270 946-1032(1047)
444 PRK06793 fliI flagellum-specif 99.1 4.6E-10 1E-14 119.8 10.5 169 52-279 131-306 (432)
445 PRK13830 conjugal transfer pro 99.1 2.2E-09 4.8E-14 124.5 16.6 68 210-278 650-727 (818)
446 TIGR00606 rad50 rad50. This fa 99.1 4.7E-10 1E-14 136.5 11.4 76 184-262 1191-1277(1311)
447 TIGR02788 VirB11 P-type DNA tr 99.1 3.7E-10 8E-15 116.8 8.8 142 75-283 137-280 (308)
448 cd01120 RecA-like_NTPases RecA 99.0 6.2E-10 1.3E-14 102.6 8.0 62 195-256 68-139 (165)
449 PRK01156 chromosome segregatio 99.0 1.2E-09 2.6E-14 128.7 10.7 77 191-269 798-883 (895)
450 PRK06067 flagellar accessory p 99.0 7.3E-09 1.6E-13 102.9 13.5 162 70-269 12-186 (234)
451 TIGR02168 SMC_prok_B chromosom 98.9 2E-09 4.3E-14 130.0 7.6 76 191-269 1086-1165(1179)
452 PRK06995 flhF flagellar biosyn 98.9 9.7E-09 2.1E-13 111.2 10.5 152 70-253 244-401 (484)
453 cd01131 PilT Pilus retraction 98.8 1.5E-08 3.3E-13 98.1 10.3 57 204-269 66-122 (198)
454 cd01125 repA Hexameric Replica 98.8 2.3E-08 4.9E-13 99.7 11.8 135 82-254 1-159 (239)
455 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.8E-09 6E-14 113.8 5.0 51 69-124 19-70 (504)
456 PRK02224 chromosome segregatio 98.8 8.5E-09 1.8E-13 121.4 9.5 78 192-271 779-869 (880)
457 TIGR02169 SMC_prok_A chromosom 98.8 8.5E-09 1.8E-13 124.6 8.5 77 191-270 1071-1151(1164)
458 smart00382 AAA ATPases associa 98.7 4.9E-07 1.1E-11 80.0 14.7 118 81-252 1-124 (148)
459 PRK07196 fliI flagellum-specif 98.6 3.1E-08 6.8E-13 105.9 5.8 87 68-155 142-239 (434)
460 TIGR02655 circ_KaiC circadian 98.6 1.8E-08 3.8E-13 110.7 3.4 165 71-269 9-190 (484)
461 TIGR01026 fliI_yscN ATPase Fli 98.6 4.1E-07 9E-12 98.0 13.8 174 68-282 150-346 (440)
462 PRK13891 conjugal transfer pro 98.6 1.5E-06 3.2E-11 101.7 18.2 69 205-274 680-751 (852)
463 TIGR00611 recf recF protein. A 98.6 1.1E-07 2.4E-12 100.6 7.2 58 194-254 275-341 (365)
464 TIGR03881 KaiC_arch_4 KaiC dom 98.5 2.4E-08 5.3E-13 98.7 1.5 33 71-103 8-41 (229)
465 cd01130 VirB11-like_ATPase Typ 98.5 2.2E-07 4.8E-12 89.0 8.0 81 71-154 14-98 (186)
466 PRK14079 recF recombination pr 98.5 1.9E-07 4.2E-12 98.3 8.0 73 194-274 263-344 (349)
467 COG0419 SbcC ATPase involved i 98.5 3.4E-07 7.5E-12 108.0 10.6 78 191-270 812-897 (908)
468 cd02023 UMPK Uridine monophosp 98.5 1.1E-07 2.3E-12 92.0 5.2 112 84-227 1-113 (198)
469 TIGR01420 pilT_fam pilus retra 98.5 1.2E-06 2.6E-11 92.1 12.1 56 204-268 187-242 (343)
470 PRK06002 fliI flagellum-specif 98.5 3.8E-07 8.2E-12 97.8 8.0 85 46-138 134-230 (450)
471 PRK05399 DNA mismatch repair p 98.4 4.7E-07 1E-11 105.6 8.4 138 69-264 595-738 (854)
472 TIGR00767 rho transcription te 98.4 5.2E-07 1.1E-11 95.1 7.3 81 2-107 102-193 (415)
473 PLN03210 Resistant to P. syrin 98.3 1.5E-06 3.2E-11 105.2 10.2 165 72-291 197-365 (1153)
474 TIGR02680 conserved hypothetic 98.3 9.4E-07 2E-11 107.7 7.3 61 191-254 1244-1316(1353)
475 PRK13898 type IV secretion sys 98.3 1.7E-05 3.7E-10 92.6 17.0 48 208-255 638-686 (800)
476 PRK09825 idnK D-gluconate kina 98.2 9.4E-07 2E-11 84.0 3.6 64 81-151 2-69 (176)
477 PF13555 AAA_29: P-loop contai 98.2 2E-06 4.3E-11 66.9 4.3 37 72-108 12-49 (62)
478 cd01122 GP4d_helicase GP4d_hel 98.2 5.8E-05 1.3E-09 76.4 15.9 37 69-105 17-53 (271)
479 TIGR03861 phenyl_ABC_PedC alco 98.1 0.00028 6E-09 70.8 20.1 166 383-553 1-178 (253)
480 PF09818 ABC_ATPase: Predicted 98.1 7.3E-05 1.6E-09 79.3 15.9 79 194-273 322-416 (448)
481 PRK06315 type III secretion sy 98.1 6.5E-06 1.4E-10 88.5 8.2 109 68-180 151-277 (442)
482 cd01876 YihA_EngB The YihA (En 98.1 4.9E-06 1.1E-10 76.5 6.4 64 169-240 101-169 (170)
483 TIGR01247 drrB daunorubicin re 98.1 0.0002 4.4E-09 70.9 17.9 158 392-554 1-166 (236)
484 PRK01889 GTPase RsgA; Reviewed 98.1 2.9E-06 6.3E-11 89.6 4.9 76 72-151 185-262 (356)
485 PRK13873 conjugal transfer ATP 98.1 9.8E-05 2.1E-09 86.3 17.8 47 209-255 632-679 (811)
486 cd00009 AAA The AAA+ (ATPases 98.1 3.4E-05 7.3E-10 68.9 10.8 54 200-254 72-130 (151)
487 PF13558 SbcCD_C: Putative exo 98.0 1.1E-05 2.4E-10 68.0 6.5 48 192-239 30-90 (90)
488 PRK00454 engB GTP-binding prot 98.0 8.5E-05 1.8E-09 71.0 13.1 67 169-243 126-195 (196)
489 TIGR00152 dephospho-CoA kinase 98.0 5.4E-06 1.2E-10 79.5 4.8 72 197-270 60-132 (188)
490 TIGR02903 spore_lon_C ATP-depe 98.0 1.7E-05 3.6E-10 89.6 9.4 113 81-239 174-291 (615)
491 TIGR00416 sms DNA repair prote 98.0 1.2E-05 2.6E-10 87.5 7.8 62 211-272 169-247 (454)
492 PF00488 MutS_V: MutS domain V 98.0 2.3E-05 5E-10 78.0 8.9 45 210-254 120-166 (235)
493 PRK08149 ATP synthase SpaL; Va 98.0 8.2E-06 1.8E-10 87.4 6.0 69 68-137 138-215 (428)
494 PRK13764 ATPase; Provisional 98.0 5.3E-05 1.1E-09 84.5 12.1 65 209-281 321-402 (602)
495 TIGR00235 udk uridine kinase. 98.0 6.5E-06 1.4E-10 80.2 4.2 28 80-107 4-31 (207)
496 TIGR03880 KaiC_arch_3 KaiC dom 97.9 0.00014 3E-09 71.7 13.5 58 211-269 106-177 (224)
497 PRK07594 type III secretion sy 97.9 8.1E-06 1.8E-10 87.6 5.0 64 51-122 129-192 (433)
498 PRK09270 nucleoside triphospha 97.9 9.1E-06 2E-10 80.5 4.5 72 80-155 31-107 (229)
499 cd01136 ATPase_flagellum-secre 97.9 1.7E-05 3.7E-10 82.2 5.9 50 68-121 56-105 (326)
500 TIGR02524 dot_icm_DotB Dot/Icm 97.9 5.6E-05 1.2E-09 79.8 9.7 28 80-107 132-159 (358)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-92 Score=781.91 Aligned_cols=488 Identities=43% Similarity=0.693 Sum_probs=427.1
Q ss_pred CCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-
Q 008676 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (557)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~- 124 (557)
...++.++|+|+++..+.+....+++|+|||++++|||++||||||||||||||++|+|+...+...+|+|++||++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998654334688999999999999999999999999999999999999875567999999997543
Q ss_pred -CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..++.+|||.|||.++|++||+|+|.|++.+|+|...+.++++++|+++++++||.+|+|+.+|+...|++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 2346789999999999999999999999999999888899999999999999999999999999988899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCChhHHHHHhhcc--hhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHH
Q 008676 284 EFFAQAGFPCPALRNPSDHFLRCINSD--FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (557)
Q Consensus 284 ~~f~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (557)
+||++.|++||+..||+||++++++.+ .+...+ ..+.....+.++..+...+....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE----------------------AVRIAKLINKFSQTDNLKKTLEA 317 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh----------------------HHHHHHHhhhccccchhhhhHHH
Confidence 999999999999999999999998743 111110 11111122222211100110000
Q ss_pred HhhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 008676 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 441 (557)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff 441 (557)
..... ...... .....++||.|++.|++|.+++++|||.++..|+++.+++|+++|++||+++++..++++|.|++||
T Consensus 318 ~~~~~-~~~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~ 395 (613)
T KOG0061|consen 318 LEKSL-STSKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFF 395 (613)
T ss_pred Hhhhc-cccccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Confidence 00000 000000 1112789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHH
Q 008676 442 VFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 520 (557)
Q Consensus 442 ~~~~~~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~ 520 (557)
++.++.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|+++
T Consensus 396 ~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~ 475 (613)
T KOG0061|consen 396 ILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLI 475 (613)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 99999888775 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008676 521 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 521 ~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+++..+++++++++++++.||...|.++++++++.++
T Consensus 476 ~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~ 512 (613)
T KOG0061|consen 476 ILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFL 512 (613)
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.6e-89 Score=763.94 Aligned_cols=491 Identities=32% Similarity=0.526 Sum_probs=412.1
Q ss_pred CCCcceEEEEEeEEEEEEccC------------------------cccccceeceeEEEeCCeEEEEECCCCCcHHHHHH
Q 008676 45 SGDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (557)
Q Consensus 45 ~~~~~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~ 100 (557)
+...++.++|.|++|++...+ -+++.+|+|||+++++||++||+||||||||||||
T Consensus 33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~ 112 (659)
T PLN03211 33 SSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLN 112 (659)
T ss_pred CCCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 344578999999999986431 02467999999999999999999999999999999
Q ss_pred HHHcCCCCCCCceeEEEECCEeCCC-CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008676 101 ALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 101 ~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
+|+|+.+++ ..+|+|.+||++... ..++++||+|++.+++.+||+||+.|++.++.+...+.++++++++++++.+||
T Consensus 113 iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL 191 (659)
T PLN03211 113 ALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL 191 (659)
T ss_pred HHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999998763 248999999987532 235699999999999999999999998877655445566667789999999999
Q ss_pred CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 008676 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (557)
Q Consensus 180 ~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 259 (557)
+++.|+.+|+..+++||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++.
T Consensus 192 ~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~ 271 (659)
T PLN03211 192 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVY 271 (659)
T ss_pred hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999998889999999999976789
Q ss_pred hcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchH
Q 008676 260 ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTA 339 (557)
Q Consensus 260 ~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (557)
++||++++|++|+++++|+++++.+||++.|++||++.||+||++++++.+.... +. ...+.+
T Consensus 272 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~-----~~~~~~------- 334 (659)
T PLN03211 272 QMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV-----SEREKP------- 334 (659)
T ss_pred HhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-----cccccc-------
Confidence 9999999999999999999999999999999999999999999999876532100 00 000000
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHhh--hhcc--------cCccc--cCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHH
Q 008676 340 EAIKNLIDFYQTSQHSYAAKEKVEG--ISKV--------KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLR 407 (557)
Q Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~--------~~~~~--~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r 407 (557)
...+.+.+.|++... .......+. .... ..... ....+.++|++|+++|++|++++ |||+.+...|
T Consensus 335 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r 412 (659)
T PLN03211 335 NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLR 412 (659)
T ss_pred hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHH
Confidence 011223334432111 111000000 0000 00000 11234578999999999999988 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHH
Q 008676 408 LVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM-SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSA 486 (557)
Q Consensus 408 ~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~-~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~ 486 (557)
+++++++|+++|++||+++ +.++++|.|++||+++++.+. ++..++.|+.||++|+||+.+|+|++++|++|++++|
T Consensus 413 ~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~e 490 (659)
T PLN03211 413 VFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGD 490 (659)
T ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999985 678999999999998886664 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008676 487 MPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 487 lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++||+.+|++++|.++++++
T Consensus 491 lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~ 561 (659)
T PLN03211 491 LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV 561 (659)
T ss_pred HHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.6e-86 Score=744.13 Aligned_cols=469 Identities=34% Similarity=0.571 Sum_probs=412.6
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCC
Q 008676 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (557)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35789999999999999999999999999999999999987754458999999997542 2457899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
|+|||.|++.++.+...+.++++++++++++.+||.+++|+.+|+. ..++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999998887766677778889999999999999999999974 367899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHH
Q 008676 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~ 303 (557)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||++.|++||+..||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhccc-C-----ccccCCC
Q 008676 304 LRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK-G-----TVLDAGG 377 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~-----~~~~~~~ 377 (557)
+++++.+.+.. ....+..+++.+.|+.++...+..+......... + ...+...
T Consensus 276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (617)
T TIGR00955 276 VQVLAVIPGSE---------------------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334 (617)
T ss_pred HHHhhcCcccc---------------------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccc
Confidence 98875431110 0011223455666766655544433332111100 0 0111245
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-hhHHH
Q 008676 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPS 456 (557)
Q Consensus 378 ~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~-~~~~~ 456 (557)
+..+|+.|+++|++|++++.||||.++..|+++.+++|+++|++||++++++.++++|.|++|++++++.|.++ ..++.
T Consensus 335 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~ 414 (617)
T TIGR00955 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINV 414 (617)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999988888765 56889
Q ss_pred HHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008676 457 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 536 (557)
Q Consensus 457 ~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~ 536 (557)
|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.+++++++++++
T Consensus 415 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~ 494 (617)
T TIGR00955 415 FTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLIS 494 (617)
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHhc
Q 008676 537 SIVPNFLMGIITGAGIQVSV 556 (557)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~~ 556 (557)
+++||..+|..+++.++.++
T Consensus 495 ~~~~~~~~a~~~~~~~~~~~ 514 (617)
T TIGR00955 495 CAFSSTSMALTVGPPFVIPF 514 (617)
T ss_pred HhcCchHHHHHHHHHHHHHH
Confidence 99999999999999988775
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.1e-85 Score=782.52 Aligned_cols=493 Identities=24% Similarity=0.410 Sum_probs=421.6
Q ss_pred cceEEEEEeEEEEEEcc---------------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHH
Q 008676 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~ 100 (557)
+.+.+.|+||++..... +...+++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 36779999999876321 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEeCCC----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-H
Q 008676 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (557)
Q Consensus 101 ~L~g~~~~~-~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v 170 (557)
+|+|+..+. ...+|+|.+||++... .++.++||+|++.+++.+||+|||.|+++++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987531 2345999999999999999999999998876542 2334443333 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 008676 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (557)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~ 249 (557)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999987 4999999
Q ss_pred EeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccC
Q 008676 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (557)
Q Consensus 250 ~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++.+.+...... + .+ .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~---~-----~e-~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKP---G-----YE-K 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccc---c-----cc-c
Confidence 9999988999999999999999999999999999999999999999999999999876543211100 0 00 0
Q ss_pred CCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc------------------cCccccCCCCCCcHHHHHHHHHH
Q 008676 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~Q~~~L~~ 391 (557)
..+ ...+++++.|+.|+.+++..+.++..... .......+.+..||++|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 011 11235778888887665554444322100 00011234578899999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHhcCC
Q 008676 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 471 (557)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~~~er~v~~rE~~~g 471 (557)
|+++++||||.+++.|+++++++|+++|++||++++++.++++|.|++||++++.+|+++..++.++.||+||+||+.++
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 008676 472 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAG 551 (557)
Q Consensus 472 ~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~ 551 (557)
+|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||+.+|+.+++.
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 008676 552 IQVSV 556 (557)
Q Consensus 552 ~~~~~ 556 (557)
++.++
T Consensus 570 ~~~~~ 574 (1394)
T TIGR00956 570 LLLAL 574 (1394)
T ss_pred HHHHH
Confidence 87765
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.5e-84 Score=775.06 Aligned_cols=482 Identities=28% Similarity=0.431 Sum_probs=418.5
Q ss_pred ceEEEEEeEEEEEEccCc--------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008676 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
++.+.|+||+|.++.+.. +.+.+|+|||++++||++++|+||||||||||||+|+|+.++. ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 457999999999864321 2457999999999999999999999999999999999997642 3589999999
Q ss_pred EeCCC--CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 121 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998877665556666778899999999999999999997767899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (557)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999989999999999998778999999999996 8999999
Q ss_pred Cc----chHHHHHHhC-CCC-CCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhc
Q 008676 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (557)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (557)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5789999997 664 999999999999876432100 001246788888
Q ss_pred chhhHHHHHHHhhhhccc-C--ccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 008676 352 SQHSYAAKEKVEGISKVK-G--TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (557)
Q Consensus 352 s~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~ 428 (557)
|+.++...+.+.+..... + ......++.++|++|+++|++|+++++||||.+++.|+++++++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 887766655544332211 1 1111356789999999999999999999999999999999999999999999999976
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 008676 429 Y---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFM 504 (557)
Q Consensus 429 ~---~~~~~r~g~lff~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m 504 (557)
+ .++++|.|++|++++++.+..+ ..+|.|..||++|+|||.+|+|++++|++|++++|+|+.++.+++|.+|+|||
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m 1317 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAM 1317 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 4677889999998888777554 45799999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008676 505 VRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 505 ~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
+||++++.+||+|++++|++.++++++|+++++++||..+|.++++.++++|+
T Consensus 1318 ~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140 1318 VAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988763
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.4e-83 Score=768.52 Aligned_cols=496 Identities=24% Similarity=0.392 Sum_probs=420.6
Q ss_pred cceEEEEEeEEEEEEc-----------------------------cCcccccceeceeEEEeCCeEEEEECCCCCcHHHH
Q 008676 48 VSARLTWKDLTVMVTL-----------------------------SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL 98 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~-----------------------------~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTL 98 (557)
+.+.+.|+||++.... +++.++.||+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 5678999999997651 01124669999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-------CCCHHHH---
Q 008676 99 LDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK--- 166 (557)
Q Consensus 99 l~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~--- 166 (557)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|+++++.+. ..+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998765569999999987532 2467999999999999999999999998765321 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008676 167 ---------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 167 ---------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
+..++++++.+||++++||.+|+..+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCChhHHH
Q 008676 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (557)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~ 304 (557)
|+.++.++++.|+++++ .|+|+|+++|||.++++++||+|++|++|+++|+|+++++.+||+++|+.||++.||+||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987 58999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc---cCccccCCCCCCc
Q 008676 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQAS 381 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 381 (557)
++.+.+.... . +.....|..... .+++++.|+++...+...+++...... .......+.+..+
T Consensus 448 ~v~s~~~~~~--~--------~~~~~~p~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 448 EVTSKKDQEQ--Y--------WADRNKPYRYIS----VSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred HhcCchhhhh--h--------hhccCCccccCC----HHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 8775431110 0 000111111111 235788888887766655544322111 1111123568899
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008676 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFV 458 (557)
Q Consensus 382 ~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~r~g~lff~~~~~~~~~~~~~~~~~ 458 (557)
++.|++.|++|+++.++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.+|.++..++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997543 34566778889999888898888999999
Q ss_pred HhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008676 459 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASI 538 (557)
Q Consensus 459 ~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~ 538 (557)
.||+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++++++++++++
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~ 673 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASV 673 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcC
Q 008676 539 VPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 539 ~p~~~~a~~~~~~~~~~~~ 557 (557)
+||+.+|+.+++.++.+++
T Consensus 674 ~~~~~~A~~~~~~~~l~~~ 692 (1470)
T PLN03140 674 CRTMIIANTGGALVLLLVF 692 (1470)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-85 Score=739.55 Aligned_cols=476 Identities=30% Similarity=0.473 Sum_probs=427.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-Cccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFGT 129 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~-~~~~ 129 (557)
..|+|+.+++..++ +.+++|+|||+.++||.++||||+||||||||||+|+||...+ .++|+|++||.+.. . -.|.
T Consensus 788 ~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred EEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccc
Confidence 56777777665443 5688999999999999999999999999999999999997653 57999999999865 2 3477
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
+|||.|+|.|.+.+||||.|.|+|.+|+|..++.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999966 99999999999999999
Q ss_pred HhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEEEcCcch----HH
Q 008676 210 LMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----AF 283 (557)
Q Consensus 210 ~~~p-~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~ 283 (557)
+.|| .||+|||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|+ +|++||+|+..+ +.
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li 1024 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLI 1024 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHH
Confidence 9999 89999999999999999999999999999999999999999999999999999998 789999999765 45
Q ss_pred HHHHhCC-CCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHH
Q 008676 284 EFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362 (557)
Q Consensus 284 ~~f~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (557)
+||++.| .+||...|||||+++++....+. +...++.+.|++|+.+++.++++
T Consensus 1025 ~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1025 EYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHHH
Confidence 6999986 78999999999999988653211 00124789999999999998888
Q ss_pred hhhhccc-C---ccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 008676 363 EGISKVK-G---TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSC 438 (557)
Q Consensus 363 ~~~~~~~-~---~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~ 438 (557)
++..... + +...++++.+|+|.|++.+++|++..+||+|.++++|++..++.|+++|+.||+++.+..+++|..|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 8765432 2 11225678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhH-HHHHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHH
Q 008676 439 ASFVFGFVTFMSIGGF-PSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFF 517 (557)
Q Consensus 439 lff~~~~~~~~~~~~~-~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f 517 (557)
+|..+++..-...+.. +....||.+++||+.+|+||+.+|++|++++|+|+.++++.+|.+|+|||+|+..++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9988877655544444 445568889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 008676 518 VLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSV 556 (557)
Q Consensus 518 ~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~ 556 (557)
|+..+++.++.+.+|+++.+++||.++|.++.+.+++++
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.4e-83 Score=763.66 Aligned_cols=480 Identities=29% Similarity=0.452 Sum_probs=415.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-Ccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFG 128 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~ 128 (557)
..++|+||++.+..++ +++.+|+|||+++++||+++|+||||||||||||+|+|+.++....+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 4589999999985322 34679999999999999999999999999999999999987433348999999998642 246
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++||+|++.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+. ..+|||||||||+||++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 79999999999999999999999988876655566677788999999999999999999863 34899999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC-eEEEEcCc----chH
Q 008676 209 ILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAA 282 (557)
Q Consensus 209 L~~~p~-llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~ 282 (557)
|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999987678899999999987 99999997 567
Q ss_pred HHHHHhCCC-CCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHH
Q 008676 283 FEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (557)
Q Consensus 283 ~~~f~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (557)
.+||+..|+ +||+..|||||++++++.+... +..+.+.+.|+.|...+...+.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHHH
Confidence 899999996 8999999999999987543110 0011355667766665554443
Q ss_pred Hhhhhcc---cCc---cccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008676 362 VEGISKV---KGT---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILAR 435 (557)
Q Consensus 362 ~~~~~~~---~~~---~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r 435 (557)
++..... ... ....+++.++|++|+++|++|+++++||||.+++.|+++++++|+++|++||++++++.++++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3322111 000 0112467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHH-HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHH-
Q 008676 436 GSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH- 513 (557)
Q Consensus 436 ~g~lff~~~~~~~~~~~~~~~~~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~- 513 (557)
.|++|+++.+..+.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..
T Consensus 1130 ~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~ 1209 (1394)
T TIGR00956 1130 MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccc
Confidence 99999988877776667789999999886 9999999999999999999999999999999999999999999988765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC
Q 008676 514 ------YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQVSVL 557 (557)
Q Consensus 514 ------f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~ 557 (557)
|++|+++++++.++++++|+++++++||..+|.+++|.++++++
T Consensus 1210 ~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~ 1259 (1394)
T TIGR00956 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCL 1259 (1394)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988763
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-75 Score=660.79 Aligned_cols=473 Identities=28% Similarity=0.469 Sum_probs=419.9
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCCHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
.++|+|+|+-++||+++.++||+||||||||++|+|.++.....+|+|.+||++.+. .++.++|++|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 469999999999999999999999999999999999987665568899999987543 246799999999999999999
Q ss_pred HHHHHHhhccCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008676 147 ETISYSARLRLPDK----MPWSEKR-TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 147 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
|+|.|+++++.+.. .++.++. +.++.+++.+||++|+||+||+...||+||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 2333332 267889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHhCCCCCCCCCCCh
Q 008676 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~ 300 (557)
|+|||+.++.++++.|+++++ .+.|+++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhcchhhHHHHHHHhhhhcc---cCccccCCC
Q 008676 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGG 377 (557)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~ 377 (557)
||+.++.+... . ...+...+.+....+ ..++.+.|.+++.+.+...+++..... .......+.
T Consensus 368 DfLt~vts~k~-~---------~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKKD-Q---------EQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCcc-c---------cccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 99888765210 0 011111222221112 246888999999888877766654322 122234677
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008676 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (557)
Q Consensus 378 ~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~~~~~~~r~g~lff~~~~~~~~~~~~~~~ 456 (557)
+..++|.|++.|++|.|.++.||..++..++.+.+++|+++|++||+.+ .+..+...|+|++||.+++.+|.++.+++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 777889999999999999999999999999
Q ss_pred HHHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008676 457 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 536 (557)
Q Consensus 457 ~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~ 536 (557)
.++.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||+++++++++.+|+.+++++++
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHh
Q 008676 537 SIVPNFLMGIITGAGIQVS 555 (557)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~ 555 (557)
+++||+..|+.+|+..+..
T Consensus 594 ~l~~t~~~An~~g~~~~L~ 612 (1391)
T KOG0065|consen 594 SLSRTLSIANLIGGILLLV 612 (1391)
T ss_pred HhcchHHHHhhHhHHHHHH
Confidence 9999999999998876653
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=409.96 Aligned_cols=217 Identities=31% Similarity=0.438 Sum_probs=198.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++||++.| ++..+|+|||+++++||+++|+|||||||||||+||.++..++ +|+|.++|++..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 48999999999 5788999999999999999999999999999999999999986 999999997542
Q ss_pred CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..++++|+|+|+.+|||++||.||+..+...- .+.++++.++++.++|+.+||.+.+|. +|.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999985432 256788889999999999999999887 56789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++..
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 7899999999999999999999887653
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=407.75 Aligned_cols=220 Identities=27% Similarity=0.387 Sum_probs=200.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|..+.++...+|+|||++|++||+++|+|.||||||||+|+|.++..|+ +|+|.+||+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHH
Confidence 7899999998653223467999999999999999999999999999999999999997 9999999987421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+++||++||+++++...||.||+.|..++. +.++++.++++.++|+.+||++..+. +|.+|||||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRV 150 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRV 150 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHH
Confidence 2467999999999999999999999998775 46789999999999999999988887 5678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++||+|||||+|||.+...|+++|+++.+ .|.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999976 599999999995 789999999999999999999998876
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 230 F 230 (339)
T COG1135 230 F 230 (339)
T ss_pred h
Confidence 4
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=395.67 Aligned_cols=225 Identities=25% Similarity=0.432 Sum_probs=204.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++|+|+|+.| .++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||+++.. .
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHH
Confidence 7899999999 4688999999999999999999999999999999999999997 9999999998643 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
++++|||-|...|||++||.||+.+-..+. ++++++.+++++++++.+||++ ..++ +|++|||||+|||.
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVG 145 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVG 145 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHH
Confidence 478999999999999999999999987765 5678888999999999999975 3443 78999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||||+.+|+++++|||+++|||.++.++-+.++++.+ -|+|||++||| .+|+.+++|||.+|++|+++..++|+++.
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999977 59999999999 57999999999999999999999999886
Q ss_pred HHHHhCCCCCCCCCCChhHHHHH
Q 008676 284 EFFAQAGFPCPALRNPSDHFLRC 306 (557)
Q Consensus 284 ~~f~~~g~~~~~~~~~~~~~~~~ 306 (557)
. ||++-|+..
T Consensus 225 ~-------------~Pan~FV~~ 234 (309)
T COG1125 225 A-------------NPANDFVED 234 (309)
T ss_pred h-------------CccHHHHHH
Confidence 5 666666654
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.2e-50 Score=385.15 Aligned_cols=220 Identities=33% Similarity=0.463 Sum_probs=199.7
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...++++++++++ +++.|++|||++|++||+++|+||||||||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4569999999998 6789999999999999999999999999999999999999997 9999999987431
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (557)
.++++|+++|+..||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... ++. +|.+|||||
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchH
Confidence 1367999999999999999999999975543 356788888899999999999876 444 778999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
+||++||||++.||+++++||||+||||.++..+.++++++.+ -|.|++++|||. ++++.+|||+++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999999987 499999999995 78999999999999999999999
Q ss_pred cchHHH
Q 008676 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-50 Score=389.07 Aligned_cols=204 Identities=32% Similarity=0.420 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++++++.| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999999 3478999999999999999999999999999999999999996 999999999875555789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+||+|++.++|.+||+||+.++..... .++++.+++++++|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 999999999999999999999987652 4566777899999999999998887 67899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
.+|++|+||||+++||+.++..+.+.|.++.+ .++||+++|||. +|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999865 689999999995 7899999999999984
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-49 Score=407.29 Aligned_cols=221 Identities=37% Similarity=0.515 Sum_probs=198.2
Q ss_pred EEEEEeEEEEEEccCcc-cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
.++++||++.| + .+.+|+||||++++||++||+||||||||||+|+|+|+..|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999999 4 578999999999999999999999999999999999999996 9999999987542
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++++||+||++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..+++ +++||+|||||++|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHH
Confidence 2467999999999999999999999999887432 245567899999999999855554 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+||+++|++|||||||+||||.++.++++.|++++++| +||+++||++ +++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999977 8999999996 68999999999999999999999888766
Q ss_pred HHHh
Q 008676 285 FFAQ 288 (557)
Q Consensus 285 ~f~~ 288 (557)
.+..
T Consensus 227 ~~~~ 230 (293)
T COG1131 227 KFGG 230 (293)
T ss_pred hhcc
Confidence 5543
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-49 Score=384.52 Aligned_cols=209 Identities=32% Similarity=0.465 Sum_probs=182.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++||++.|..+.. ...+|++||++|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 568999998864332 267999999999999999999999999999999999999986 9999999976431
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
+++.+|||+|+..|.|++||+||+.+...+.. .+..+.+++++++++.+||.+..+.. +|.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~----~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC----CchhcCHHHHHH
Confidence 24579999999999999999999998765542 22335667788999999998766521 567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|+|||||+.+|+++|+||||.+||+.++..++++|++++++ |+|||++|||| ++..+|||++.|++|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999874 99999999996 68899999999999984
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.7e-50 Score=393.93 Aligned_cols=219 Identities=35% Similarity=0.444 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++.+||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58999999999 5688999999999999999999999999999999999999986 9999999987542
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++||||.+.....+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHH
Confidence 2367999999998888999999999984322111 11233444579999999999999998764 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||+ +.+.++||++++|++|+++++|+|++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999985 699999999996 6899999999999999999999998875
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=404.74 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=199.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999999 2222999999999999999999999999999999999999997 9999999998643 34
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
|.+++|||+..+||+|||+||+.|+.+.+ ..++++.+++++++.+.++|++..|+ +|++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHH
Confidence 78999999999999999999999998876 45688889999999999999999988 45789999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+++|+++|||||.|+||+..+..+...|+++.+ -|.|+|.+|||. .|+..++|||.+|++|++...|++.++.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999976 589999999995 68999999999999999999999998754
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-49 Score=387.17 Aligned_cols=218 Identities=30% Similarity=0.467 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--c
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--~ 127 (557)
..++++|+++.|. .+++|+||||++++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3589999999993 226999999999999999999999999999999999999986 99999999875433 3
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 128 ~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.+||||||.. .-|| +||+|.+.++...+.. ...+ ++.++.+++.|+.+|+.+..|+.+| +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 5799999964 3355 6999999987433221 1222 3346889999999999999999887 499999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||+ ..+.++||+|+.|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999999999999999996 68999999999995 678899999887
Q ss_pred HH
Q 008676 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 54
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-49 Score=406.25 Aligned_cols=218 Identities=27% Similarity=0.450 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
..++++|+++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 358999999999 4688999999999999999999999999999999999999997 9999999998642 3
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+|.+|+|||+-.|||+|||+||+.|+.+.+ ....+++.++++.++++.++|++.+++ ++.+|||||||||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234456788999999999999997776 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||. +|+..++|||.+|++|++...|+|+++-
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999976 699999999995 7899999999999999999999999874
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=389.03 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~~~~- 125 (557)
|+++++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..|+ +|.|.+||+ +...
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 457888988888 4677999999999999999999999999999999999999997 999999999 4322
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..++||||+|+..+|++|||.||+.|+.+.+ ....++.+.+.++.++|+.+.|++..+. +|.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 3478999999999999999999999998776 2334567788999999999999988776 6789999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
++||||+.+|++||||||+++||..-+.++.+.|+++.++ |.|++++|||+ ++++++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 799999999999999999999999988
Q ss_pred HH
Q 008676 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 53
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-49 Score=366.94 Aligned_cols=217 Identities=31% Similarity=0.424 Sum_probs=199.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|++++++++|. ...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+... .+
T Consensus 2 l~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHh
Confidence 67889999883 2345999999999999999999999999999999999999997 9999999987432 25
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+++|.++.+..++..||++|||.|.+++. ++...+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHH
Confidence 78999998889999999999999999886 56677888999999999999999999876 59999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||++||++++|||||||||..+...+.+.+++++++|++||++||. .+++..+||+|++|++|++++.|+.++...
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999 589999999999999999999999887654
No 23
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-48 Score=373.48 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=194.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.|+++||++.|+ +++++|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4689999999995 4688999999999999999999999999999999999999886 9999999976321
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (557)
.++++||++|++.+.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+++|+.+.+-++.+ .||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 2467999999999999999999999875333221 12234455678889999999988877554 699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|||+|||+|||||+.+|+++|.|||+++|||.++.++++.|+++++ +|.|||++.|+. +-+.++|||++-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999986 799999999995 78999999999999999999
Q ss_pred EcCcchHHH
Q 008676 276 FGETSAAFE 284 (557)
Q Consensus 276 ~G~~~~~~~ 284 (557)
+|+++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5e-48 Score=357.06 Aligned_cols=211 Identities=29% Similarity=0.385 Sum_probs=192.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++|+|+++.|. .++.+|+||||.+++||++-|+||||||||||||+|.+...|+ +|+|++||+++..
T Consensus 2 I~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeeccccccccc
Confidence 78999999984 3477999999999999999999999999999999999999996 9999999987421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+++||+|+||..+.++.||+||+.|+.+.. +.+.++.++++.++|+.+||.+.++. .|.+|||||+|||
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRv 146 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRV 146 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHH
Confidence 2478999999999999999999999997765 45678889999999999999988776 5678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
+||||++.+|++||.||||.+|||..+.+|++++.++.+.|.||++.||| ..-+..+-.|++.|++|+++....
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999 567888889999999999986543
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.6e-47 Score=391.73 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=194.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.++++||++.| +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999998 3467999999999999999999999999999999999999986 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.+||+||++.+++.+||+||+.+.+.++ ..+..+.+++++++++.++|.+..++.++ +||||||||++||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876553 23344555678899999999988888664 6999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987899999999995 68999999999999999999999988754
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.9e-47 Score=393.38 Aligned_cols=219 Identities=26% Similarity=0.393 Sum_probs=193.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+ +..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998421 11357999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|+||+..+++.+||+||+.+..... ..++.+.++++.++++.+||.+..|.+ +++|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1357999999999999999999999876542 234556677899999999999887764 467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999874 99999999995 688899999999999999999998776
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 4
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.6e-47 Score=395.36 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=195.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 9999999987532 24
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+||++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 244566678899999999999888774 4679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+.+|+++||||||++||+.++..+.+.|+++.++ |.|+|++||++ +++..++|++++|++|+++..|+++++.+
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999774 89999999996 68999999999999999999999987753
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=360.46 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=193.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++||++.| +++.+|+|||+.|++++++|++|||||||||||+++....+ |..+.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 57889999999999999999999999999999999998754 445688999999997532
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++++|+|+|.|..|| +|++||+.|+.++.. ...++.++.|+..|+...|.+--.....+ ...+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHH
Confidence 2478999999999999 799999999988752 22367778899999998886533222322 4567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||||+.+|++||||||||+|||.+..+|-+++.+|+ +.-|||++||.+ ..+.+..|+...+..|+++++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999997 469999999995 7899999999999999999999998
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 234 ~iF 236 (253)
T COG1117 234 KIF 236 (253)
T ss_pred hhh
Confidence 764
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-47 Score=395.39 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.|. +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2367999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|++.+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234556667899999999999887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999775 99999999995 6899999999999999999999998764
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=392.82 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||+++.. ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999986 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. ++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 234566678899999999998877764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++ +++..++|+|++|++|+++..|+++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 6899999999999999999999998764
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-46 Score=393.51 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~--G~I~~~G~~~~~--- 125 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 48999999998 3457999999999999999999999999999999999999886 7 999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++||+|+..+||++||+||+.|+.+.+ ..+..+.+++++++++.++|++..++. +++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999986543 244566677899999999999888775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++||++ +++..++|+|++|++|+++..|+++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999995 6899999999999999999999998774
No 32
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-47 Score=363.34 Aligned_cols=221 Identities=28% Similarity=0.366 Sum_probs=189.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++||++.|..++. -..+|+||||++.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 35899999999953221 125999999999999999999999999999999999999996 9999999976432
Q ss_pred --CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.+.+||||+ .+.|..||++.|.-+... .+.++. ++++.++++.+||.+..-. ++|.+|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLD----RRPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHh----cCchhcChhHHH
Confidence 246799999997 588999999999876543 233333 3448999999999764322 377899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||||+.+|++||||||||+||+..+.+|+++|.++++ .|.|.|++||| ...+..+||||++|++|++++.++.+
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999999999987 58999999999 57899999999999999999999998
Q ss_pred hHHH
Q 008676 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++..
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8754
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.2e-46 Score=389.22 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=195.0
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...++++||++.| +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999998 4567999999999999999999999999999999999999986 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.+||+||++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ +||||||||++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHH
Confidence 2356999999999999999999999865543 12334455677889999999988888664 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999988899999999995 78999999999999999999999988764
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-46 Score=370.38 Aligned_cols=215 Identities=31% Similarity=0.472 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+||+||+.+...... ..+..+..+++.++++.+||.+..++.+ ++|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13469999999999999999999998754221 1234455567889999999987776654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 678899999999999999999987654
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=390.06 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=194.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
|.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 358999999998 3467999999999999999999999999999999999999886 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++||+|++.+||++||+||+.|+...... ...+.++.+++++++++.++|.+..+++ +++|||||||||+|
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 147 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVAL 147 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 35799999999999999999999998653211 1234555667899999999998877764 46799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++..+||+|++|++|++++.|+++++.
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999996 6899999999999999999999988774
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.1e-46 Score=391.09 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 358999999998 3467999999999999999999999999999999999999986 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++||+|++.+||++||+||+.|+.+.+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 367999999999999999999999986533 234556667889999999999888774 467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999874 99999999996 6899999999999999999999988764
No 37
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=368.47 Aligned_cols=217 Identities=31% Similarity=0.458 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.++++|+++.|+. ++.+|+|+|+++++||.++|+|+||||||||+++|+|++.|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5789999999842 268999999999999999999999999999999999999996 899999998743
Q ss_pred CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 125 LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 125 ~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..++++|||+|++ .++. -||.|.+.|+.... ..+.++.+++++++++.+|+.+.++. .+..||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqR 146 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQR 146 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceee
Confidence 2347799999997 4454 49999999997654 45677889999999999999998776 557899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++||| .+.+..++|++++|++|+++++|++.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999886 7999999999 578999999999999999999999877
Q ss_pred HHH
Q 008676 282 AFE 284 (557)
Q Consensus 282 ~~~ 284 (557)
+.+
T Consensus 226 i~~ 228 (235)
T COG1122 226 IFN 228 (235)
T ss_pred Hhh
Confidence 654
No 38
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-45 Score=380.55 Aligned_cols=218 Identities=29% Similarity=0.398 Sum_probs=191.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 458999999998 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++.+ ++||||||||++|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 1356999999999999999999998755432 1233444566788999999988877765 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 68889999999999999999999887654
No 39
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-45 Score=362.39 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.|... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 4689999988311 01157999999999999999999999999999999999999886 9999999987654446799
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.+++.+|++||+.+....+ ........++++++++.++|.+..++.+ ++||||||||++|||||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233444567889999999987766644 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcc
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (557)
+|+++||||||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 589999999996 57889999999999 79999888764
No 40
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-47 Score=408.34 Aligned_cols=250 Identities=30% Similarity=0.447 Sum_probs=210.8
Q ss_pred CchhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEe
Q 008676 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (557)
|.|..|++|++|+++.+|..+..+ -..| ......|+|+|+++.|+.+ ++..||+|+||+|+
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G--~~~p---------------~~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTG--TLAP---------------DHLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCC--cccc---------------ccccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 789999999999999999876421 0011 0123469999999999754 45789999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008676 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
|||++||+||||+||||+.++|-.+++|+ +|+|.+||+|++. .+++||+|.|+|.+|.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999997 9999999998642 24789999999999998 99999999864
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008676 156 RLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 156 ~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..+.++.. +.+.+.+ .++++.+||.||+ ++.+||||||||++|||||++||.||||||.||+||+++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 22333332 2333444 3678899999997 6678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
..+.+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+-+|+++
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998865 599999999964 468899999999999999998777654
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=362.85 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999986431 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.++|.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999999999999999875443 2233445567889999999987777754 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999876 89999999996 67889999999999999999887664
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=360.96 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=182.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTY-----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEe-----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+..... .....+.++++.++++.++|.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1233444567889999999987777654 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999976 489999999996 6788999999999999998765
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=386.90 Aligned_cols=216 Identities=27% Similarity=0.394 Sum_probs=193.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999998 3457999999999999999999999999999999999999886 9999999987532 24
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.+|||+|++.+||++||.||+.|+.+.+ ..+..+.++++.++++.++|.+..++. +++|||||||||+|||
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALAR 162 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234566677899999999998877764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999866 589999999995 6899999999999999999999998765
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-45 Score=365.36 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=187.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~ 126 (557)
|.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 358999999998 3467999999999999999999999999999999999999886 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.+ .+||||||||++|
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 147 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVAL 147 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHH
Confidence 35699999999999999999999987543211 00123334566788999999987766644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999999874 89999999996 578899999999999999999987664
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=383.51 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=190.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+ +.++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998411 11357999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+++.+||+||+.+..... ..+..+.++++.++++.+||.+..++. +++||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999876543 233445567789999999998877764 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999764 89999999995 678899999999999999999998776
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=386.87 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 2334555678899999999988777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ +++..+||++++|++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999995 6889999999999999999999988764
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.8e-45 Score=363.26 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999986421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHH
Confidence 1245999999999999999999999865432 1223444567889999999987777644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999987899999999996 578999999999999999999987654
No 48
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.7e-45 Score=376.28 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.+||+||++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.+ +.||||||||++||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999876653 2234455567899999999998888765 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+||+++|++|||||||+|||+.++..+++.|+++++ ++|||++||++ +++.++|||+++|++|++++.|++++...
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999995 68999999999999999999999988754
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.9e-45 Score=363.99 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRF-----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEE-----CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 4688999988 2456999999999999999999999999999999999999886 99999999875321
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
...++|++|++.+++.+||+||+.+......... ....+..+++.++++.+||++..++.+ ++||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHH
Confidence 2359999999999999999999998754321110 013344567889999999987776644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987899999999996 67889999999999999999998
Q ss_pred cchH
Q 008676 279 TSAA 282 (557)
Q Consensus 279 ~~~~ 282 (557)
+++.
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 7765
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.4e-45 Score=359.86 Aligned_cols=207 Identities=27% Similarity=0.383 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999998831 1246999999999999999999999999999999999999886 9999999987521
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+||+||+.+....+ .....+.++++.++++.+||.+..++.+ .+||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875432 1233445567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999996 678889999999999974
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-45 Score=372.93 Aligned_cols=231 Identities=26% Similarity=0.389 Sum_probs=193.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999998421111236999999999999999999999999999999999999886 9999999987531
Q ss_pred ---CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 008676 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ---~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++||+|++ .+++ .||.||+.|+.... ..+..+.++++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 134699999986 5665 59999999876432 234556667889999999996 35555 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987899999999996 678899999999999999999999
Q ss_pred chHHH---HHHhCCCCCCC
Q 008676 280 SAAFE---FFAQAGFPCPA 295 (557)
Q Consensus 280 ~~~~~---~f~~~g~~~~~ 295 (557)
++... .++..|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 88642 34556666554
No 52
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-45 Score=371.38 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.|.......+.+|+||||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999988421111256999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHH
Q 008676 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGer 200 (557)
..+.+|||+|++. .+...||+||+.+..... ..+.++..++++++++.+||. +..++ .++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1356999999863 233469999999875432 234556667889999999997 55565 4467999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++|||+++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999874 99999999995 678889999999999999999998
Q ss_pred chHH
Q 008676 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8764
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-45 Score=361.41 Aligned_cols=218 Identities=26% Similarity=0.386 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+..+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 68899999883110 0127999999999999999999999999999999999999886 89999999875321
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.++|.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHH
Confidence 356999999999999999999998875432 1233444567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||++|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999775 89999999996 678899999999999999999987654
No 54
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.6e-45 Score=376.62 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=183.0
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEccCCCCCCCC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~l 143 (557)
++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 357999999999999999999999999999999999999886 99999999875321 34699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008676 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
||+||+.+.+..+ ..+..+.+++++++++.+||.+..++.+ +.||||||||++||+||+++|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2334455567899999999988877755 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999987899999999995 68899999999999999999999888754
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.4e-45 Score=356.02 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=182.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRF-----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEE-----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999987532 224
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.+ +.||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 2234445567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 6788999999999999999876
No 56
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.9e-45 Score=358.04 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468899998831 1267999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+ ..+..+..++++++++.++|.+..++.+ +.||||||||++|||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875433 1233444567889999999987777654 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999976 59999999996 578889999999999999999987653
No 57
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-45 Score=338.01 Aligned_cols=213 Identities=29% Similarity=0.416 Sum_probs=183.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
+.+++++++|.. .==..++.+++||++||+||||||||||||+|+|+..|. +|+|++||++... ..+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 456677777721 223578899999999999999999999999999999986 9999999997432 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
-++.++|+.++|.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+.. |.+|||||||||++||+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHH
Confidence 68999999999999999999998743211 12 345567899999999999988775 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+++-+||+||||+|+|||.-+.+++.++.++++ ++.|++++||+| +++.+++|+++++++|+|.++|+.++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999986 689999999998 6899999999999999999999987654
No 58
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=370.75 Aligned_cols=220 Identities=25% Similarity=0.324 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|....+..+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999998421111256999999999999999999999999999999999999886 9999999987531
Q ss_pred ----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008676 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
..+.++||+|++ .+++ .||+||+.|+.... ..+..+.+++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHH
Confidence 124699999986 4554 69999999875432 234555567789999999996 455654 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||||++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999764 99999999995 6788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988764
No 59
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=372.42 Aligned_cols=220 Identities=25% Similarity=0.357 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++|+++.|..+......+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48899999998422111246999999999999999999999999999999999999886 899999986431
Q ss_pred -----------------------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008676 125 -----------------------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 125 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
...+.+|||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 0124689999985 344 469999999875432 34455666789999999999
Q ss_pred C-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 008676 180 Q-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 180 ~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 258 (557)
. +..++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++
T Consensus 155 ~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~ 228 (305)
T PRK13651 155 DESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNV 228 (305)
T ss_pred ChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHH
Confidence 6 556654 467999999999999999999999999999999999999999999999987899999999995 678
Q ss_pred HhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 259 FELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.++||||++|++|++++.|++++..
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999999999999988764
No 60
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-45 Score=354.83 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999988 3456999999999999999999999999999999999999886 9999999986532 23569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+|++||+.+....+ ..+..+.++.+.++++.+|+.+..++.+ ++||||||||++||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875443 1233445567889999999987777644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5788899999999999998754
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=9.5e-45 Score=356.04 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+... ...+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6889999988321 01126999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 2234455677889999999987777654 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999987899999999996 6788999999999999998754
No 62
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.8e-45 Score=359.37 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~-----~~~~~~~G~I~~~G~~~~~- 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999988 3457999999999999999999999999999999999998 665 8999999987421
Q ss_pred ------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008676 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++.++ .+||+||+.+....+. .....+.++++.++++.+||.+..++.+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 134699999999888 7899999998754321 11222345678899999999876655420 36799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578899999999999999999987
Q ss_pred ch
Q 008676 280 SA 281 (557)
Q Consensus 280 ~~ 281 (557)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 63
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=348.19 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=196.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|..+||.++| +.++++++||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58889999998 5688999999999999999999999999999999999999997 9999999998542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+..+||+||++..|-.|||+||+......+... ....+.+.+++++|++++|.|..+++- ..||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 1235899999999999999999999887765322 223456667889999999999998853 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
|||||+.+|+.++||||++|+||.+..+|.++++.|++.|..|+++-|+. .|...+|||.+++++|++.++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999996 58899999999999999999999998764
No 64
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1e-44 Score=379.59 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=183.2
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cccEEEEccCCC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVTQDDN 138 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~ 138 (557)
.+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 466999999999999999999999999999999999999986 99999999875321 357999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 008676 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 218 (557)
+||++||+||+.|..... ..++++..+++.++++.+||++..+++ +..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 334556677899999999998777764 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||||++||+.++..+.+.|+++.+ .|+|||++||+. +++.++||+|++|++|+++..|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999976 489999999995 6889999999999999999999988764
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=360.77 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=183.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889999882 1257999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++.+||+||+.+...... ..........+++.++++.++|.+..++. +++||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12469999999999999999999987532110 00111223346678899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999976 489999999996 6788899999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88765
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=371.27 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=191.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++|+++.|.......+.+|+|||+++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 359999999998421111246999999999999999999999999999999999999886 9999999976421
Q ss_pred -----------------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 008676 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (557)
Q Consensus 126 -----------------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 185 (557)
.++.++||+|++ .+++. ||+||+.|+.... ..+..+..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999986 56664 9999998875322 234455566788999999996 44554
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008676 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4567999999999999999999999999999999999999999999999987899999999995 5788999999
Q ss_pred EEeeCCeEEEEcCcchHHH---HHHhCCCCCC
Q 008676 266 YLLSGGKTVYFGETSAAFE---FFAQAGFPCP 294 (557)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 294 (557)
++|++|++++.|++++... .+...+...|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999887642 3344444433
No 67
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-45 Score=386.62 Aligned_cols=248 Identities=30% Similarity=0.394 Sum_probs=206.2
Q ss_pred CchhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEe
Q 008676 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (557)
|.|.+|++++..++++++....- .+..+....+++.++.+|+++.++ +++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~---------------~~~~~~~~~~~~ei~~~~l~~~y~----~g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGS---------------GEKAEVANEPPIEISLENLSFRYP----DGKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCC---------------ccccccccCCCceeeecceEEecC----CCCcccCCceeEec
Confidence 57889999999999876653320 111123344566788889999985 33489999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008676 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
+|+.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++.+|+. |++||+.++..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~- 420 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP- 420 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-
Confidence 99999999999999999999999999986 9999999987532 24789999999999998 99999998732
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 156 RLPDKMPWSEKRTLVERTIIEMGL------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++ +.+.++++..|| ++..|+.+|+ +.++|||||+|||++||||+++++++++||||++||.++
T Consensus 421 ----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 421 ----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred ----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 1223 335556666665 3467888987 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..|.+.|.+++++ +|+|++||++ ....-+|+|++|++|+++..|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 9999999996 3467899999999999999999888753
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.6e-45 Score=356.35 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.|...+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999883110 0157999999999999999999999999999999999999886 9999999987532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||.+..++.+ +.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHH
Confidence 1246999999999999999999999876443 1223344567889999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 589999999996 4565 9999999999974
No 69
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-44 Score=356.44 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999987 3457999999999999999999999999999999999999886 8999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 12459999999999999999999998754321 122345567778887 576666664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987889999999996 678899999999999999999987654
No 70
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.8e-44 Score=373.45 Aligned_cols=224 Identities=26% Similarity=0.387 Sum_probs=191.4
Q ss_pred eEEEEEeEEEEEEccCc--------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008676 50 ARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
..|+++||++.|..+++ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCE
Confidence 46999999999853211 1356999999999999999999999999999999999999885 999999998
Q ss_pred eCCC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCc
Q 008676 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW 190 (557)
Q Consensus 122 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 190 (557)
+... .++.++||+|++ .++|.+||.||+.+......+ ..+.++.++++.++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~----- 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR----- 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC-----
Confidence 7532 135699999997 588999999999987543211 234566677888999999995 34454
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
++++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999774 89999999995 67889999999999
Q ss_pred CCeEEEEcCcchHH
Q 008676 270 GGKTVYFGETSAAF 283 (557)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (557)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (331)
T PRK15079 237 LGHAVELGTYDEVY 250 (331)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987764
No 71
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-44 Score=358.23 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 6899999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..++. ++.||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHH
Confidence 13469999999999999999999988642111 223444556788999999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +++..+||++++|++|++++.|++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 678889999999999999999987765
No 72
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3e-45 Score=409.86 Aligned_cols=249 Identities=29% Similarity=0.366 Sum_probs=205.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+...|.+|+.++++.+|+.+.-- .+ . ........++++|++++|.. .+..+|+|+|++|+|
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~----~~--------~----~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDK----TL--------I----HLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccc----cc--------c----cccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 45788999999999888855300 00 0 11123346999999999953 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|++.|. +|+|.+||.+.+. .++++|||+||+.+|.. |++||+.++...
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~- 573 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPE- 573 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 9999999998532 25789999999999988 999999987432
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 157 LPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.+.++. .+.+.+.+. .++..+||.+|+ +..+||||||||++|||||+++|+||+||||||+||+.+++
T Consensus 574 ----~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 574 ----ATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 222222 222333332 467789999997 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.|.+.|.++. +|+|+|+++|+++ ..+.||||++|++|+++.+|+.+++..
T Consensus 647 ~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 647 IILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999985 4799999999974 688999999999999999999998875
No 73
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=367.81 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=187.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
|.++++|+++.|..+....+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 358999999998421111246999999999999999999999999999999999999886 8999999987521
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.++.+|||+|++ .+++ .||+||+.|+.... ..+..+..+++.++++.+||. +..++ .++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSG 148 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCH
Confidence 134699999986 4665 49999999875432 234555667789999999996 55665 3467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++|||+++|++|++++.
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 589999999995 678899999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 228 g~~~~~~ 234 (286)
T PRK13646 228 TSPKELF 234 (286)
T ss_pred CCHHHHH
Confidence 9987754
No 74
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.1e-44 Score=359.82 Aligned_cols=216 Identities=30% Similarity=0.410 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 38899999998 3457999999999999999999999999999999999999886 8999999986431
Q ss_pred --------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 --------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||.+..++. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988543211 123344556788899999998776664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999995 6788999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 87665
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-44 Score=381.67 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=190.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 48999999998 3578999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..++++||+|++.+++.+||+||+.++...+... .....+.+++++++++.+|+.+..++.+ ++||||||||++
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999988999999999864321100 1112334567899999999998887754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987889999999995 7889999999999999999999998753
No 76
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-45 Score=350.73 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=205.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-Cccc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~ 129 (557)
.|+++++++++ +++.+++|+||++++|++.+++|||||||||++++|.|++.|+ +|+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58999999999 6789999999999999999999999999999999999999996 9999999998653 3467
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
|||+|.+..|++.+||.|.|.|.+.++ +++.++.++.++.+|+++++......+| .+||.|++|++.+..++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999987 6788999999999999999988777655 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHH
Q 008676 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 287 (557)
+++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|+ .+.+.++||++++|++|+.|.+|+.+++...|.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 578999999999999999999999999887553
No 77
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.7e-44 Score=363.29 Aligned_cols=216 Identities=25% Similarity=0.420 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhh
Confidence 58999999988 3467999999999999999999999999999999999999886 9999999987531
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||.||+.+...... .....+.++++.++++.+||.+..++.+ +.||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 151 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARR 151 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 12469999999999999999999988643211 1233444566788999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 89999999995 67889999999999999999998776
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 231 ~ 231 (269)
T PRK11831 231 L 231 (269)
T ss_pred H
Confidence 5
No 78
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=358.24 Aligned_cols=214 Identities=27% Similarity=0.459 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 52 LTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
++++|+++.+. + +.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 46889999883 3 56999999999999999999999999999999999999886 8999999987432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.++|.+ ..++ .++.||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHH
Confidence 1346899999999999999999999875432 2234445567889999999985 5555 3467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|++++.
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 578899999999999999999987654
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=362.93 Aligned_cols=216 Identities=27% Similarity=0.358 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 1356999999999999999999999999999999999999886 99999999875321
Q ss_pred -cccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 127 -FGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+.++|++|++. .++..||+||+.|..... .....+.++++.++++.+||.+..++.+ ..||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHH
Confidence 256999999963 345679999999874422 2334455567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999995 678899999999999999999998653
No 80
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-44 Score=360.25 Aligned_cols=218 Identities=30% Similarity=0.389 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899999882 1456999999999999999999999999999999999999886 9999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--P---DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++.+||+||+.+...... . ......+.++++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13469999999999999999999987532100 0 0011233456788899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999976 489999999996 5788999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87654
No 81
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-45 Score=351.32 Aligned_cols=220 Identities=28% Similarity=0.397 Sum_probs=196.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++.+||++++ ++-.+++|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 47899999999 6788999999999999999999999999999999999999997 99999999975421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL--------PD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
+..++.-||...+|++|||.||+..+...+. +. ....++..+++.++|+.+||.+.+|+..| +|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cC
Confidence 2457889999999999999999998855321 11 11345667889999999999999999876 49
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++++ .|.||+++-|+. ..+.++||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999999999999999988 579999999995 7899999999999999999
Q ss_pred EEcCcchHHH
Q 008676 275 YFGETSAAFE 284 (557)
Q Consensus 275 ~~G~~~~~~~ 284 (557)
++|+|+++.+
T Consensus 230 AeG~P~eV~~ 239 (250)
T COG0411 230 AEGTPEEVRN 239 (250)
T ss_pred ccCCHHHHhc
Confidence 9999998764
No 82
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.9e-44 Score=351.47 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=179.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999988 2467999999999999999999999999999999999999886 9999999986431 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+....+ .. .+++++++++.++|.+..++.+ +.|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 11 1345788999999988777644 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ +++.+++|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999996 5788899999999999998765
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.3e-44 Score=354.25 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 6789999988 3467999999999999999999999999999999999999886 9999999986532 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999998888999999998865432 2233444567888999999987777654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++. .+|++++|++|++++.|++++..
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 589999999996 4565 59999999999999999876654
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-44 Score=358.44 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.......++
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999987643334689
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 223444556788999999998766664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcc
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (557)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++..+||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999855 589999999996 67889999999998 59999887654
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.2e-44 Score=351.28 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=178.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 68999999883 1356999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+|++||+.+....+ .......++++.++++.++|.+..++.+ +.||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987666644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999987799999999996 67888999999999985
No 86
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-44 Score=404.34 Aligned_cols=245 Identities=24% Similarity=0.371 Sum_probs=196.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++.... .+ .. .........++++|+++.+. +++.+|+|+|++++|
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~---~~-----------~~--~~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ---QG-----------EK--ELASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC---CC-----------cc--ccCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 567899999999986553211 00 00 00001123599999997653 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+++|+|++ |+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 75 8999999988542 24679999999999987 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 449 ---~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 ---DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred ---CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 223333 333333333 45678999997 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 521 e~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 521 EQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999885 5799999999973 467799999999999999999877653
No 87
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-45 Score=359.02 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=199.9
Q ss_pred eEEEEEeEEEEEEcc-------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 008676 50 ARLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~ 110 (557)
..++++|+++.+... +.+...-++|+|++++.||++.|||-||||||||+++|.++..|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 358889998877531 012234689999999999999999999999999999999999996
Q ss_pred CceeEEEECCEeCC---------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 008676 111 FLSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (557)
Q Consensus 111 ~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (557)
+|+|+++|.++. .+++++++|||...|+|+.||.||..|+..++ +++++++++++.++|+.+||..
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 999999998742 13467999999999999999999999998876 6789999999999999999999
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHh
Q 008676 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFE 260 (557)
Q Consensus 182 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~ 260 (557)
..+. +|++|||||||||.|||||+.+|+|||+|||+|+|||--+.++-+.|.+|.+ -++||+++|||. +|+.+
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 8887 5678999999999999999999999999999999999999999999999976 589999999995 79999
Q ss_pred cCCeEEEeeCCeEEEEcCcchHHH
Q 008676 261 LFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 261 ~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.|||.+|++|+++..|+|+|+..
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999999864
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=352.44 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 489999999884211 1246999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++.+++.+|++||+.+..... .....+.++++.++++.+||.+..++. +++|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 146999999999999999999999865432 123344556788999999998776664 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999996 45555 589999999999988764
No 89
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-44 Score=364.18 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|.......+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 57899999988311101256999999999999999999999999999999999999986 9999999987521
Q ss_pred ----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008676 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++ .++ .+||+||+.+..... ....++..++++++++.+||. +..++.+ +.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHH
Confidence 124699999996 355 579999998865432 233455566789999999997 5666644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999999995 67889999999999999999999
Q ss_pred cchHH
Q 008676 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 87754
No 90
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.3e-44 Score=350.31 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999883 1256999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+||++..++.+ ++||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHH
Confidence 1246999999999999999999999875432 1234445567889999999987776644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
No 91
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=355.88 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=185.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~----- 124 (557)
|.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 358999999998 3467999999999999999999999999999999999999886 999999998642
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
..++.++|++|++.+++.+||+||+.+. .... .....+..+++.++++.+|+++..++.+ +.|||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 144 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSG 144 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 0124699999999999999999999753 2221 1233444567889999999987766644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.+++|++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 5778899999999999999999
Q ss_pred Ccch
Q 008676 278 ETSA 281 (557)
Q Consensus 278 ~~~~ 281 (557)
++++
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 8764
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-44 Score=349.80 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+||++++| +++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRY-----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEE-----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 4689999988 3357999999999999 99999999999999999999999886 9999999986432 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+ ..||||||||++|||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999865443 1223344567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5778899999999999998765
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=356.05 Aligned_cols=216 Identities=24% Similarity=0.447 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48899999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.+...... .....+.+.+++++++.+|+.+..++. ++.||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 12469999999999999999999987643321 122344556788999999998766654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999987899999999996 678899999999999999999987765
No 94
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-44 Score=358.11 Aligned_cols=227 Identities=28% Similarity=0.388 Sum_probs=194.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKTK----- 124 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~-~~~~~G~I~~~G~~~~----- 124 (557)
|+++||++.|...++ ...+++||||++++||++||+|+|||||||+.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999975432 4679999999999999999999999999999999999997 4 3346899999998631
Q ss_pred ----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+.+.++||||++ .|.|.+||.+.+.-...... .. .+++.++++.++|+.+||.+... +-+.+|++|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSG 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCC
Confidence 1235799999996 68999999999887765432 12 35667788999999999986321 22448999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||. .-+.++||||.||+.|++|+.
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999999987 699999999995 689999999999999999999
Q ss_pred cCcchHHH
Q 008676 277 GETSAAFE 284 (557)
Q Consensus 277 G~~~~~~~ 284 (557)
|+++++..
T Consensus 236 g~~~~i~~ 243 (316)
T COG0444 236 GPVEEIFK 243 (316)
T ss_pred CCHHHHhc
Confidence 99987653
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=357.48 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++||++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 38999999998 3467999999999999999999999999999999999999886 8999999986421
Q ss_pred -------------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 008676 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (557)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~ 191 (557)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. ++ .
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12469999999999999999999987542111 123444566788999999997653 44 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++|||+++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 467999999999999999999999999999999999999999999999987899999999996 6788899999999999
Q ss_pred eEEEEcCcchH
Q 008676 272 KTVYFGETSAA 282 (557)
Q Consensus 272 ~iv~~G~~~~~ 282 (557)
++++.|++++.
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999987664
No 96
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=343.15 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++||+..| +..++|++||+++++||+++|+|+||||||||||+|+|+.++. +|+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 48899999998 5688999999999999999999999999999999999999885 89999999986421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
+..++||||...+||.|||+|||..++..+.. +...+...+++.+.|- |.+..++.-| .|||||||.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 35689999999999999999999998654421 1111122666666664 5556666554 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++ ...+.+++||.++|.+|+++++|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-ARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 7899999888 5789999999999999999999999887
Q ss_pred HH
Q 008676 283 FE 284 (557)
Q Consensus 283 ~~ 284 (557)
..
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-44 Score=376.55 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=179.2
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cccEEEEccCCCCC
Q 008676 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVTQDDNLI 140 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~l~ 140 (557)
.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... ++.++||+|++.++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4899999999999999999999999999999999999886 99999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008676 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
+++||+||+.+....+ ..+..+.++++.++++.+||.+..++. +++|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 233445566788999999998877764 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|+++..|++++..
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999976 589999999995 6788999999999999999999887654
No 98
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-43 Score=350.55 Aligned_cols=217 Identities=47% Similarity=0.721 Sum_probs=182.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSGTILLNGHKTKL--S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~---~~~~~~G~I~~~G~~~~~--~ 126 (557)
+.|+|+++.+...+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|++... .
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQF 79 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHh
Confidence 67999999985322 13679999999999999999999999999999999999988 54 9999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
++.++|++|++.+++.+||+||+.+......+..........++++ .++.+++.+..++. ++.||||||||++|
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 154 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSI 154 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHH
Confidence 3569999999999999999999998765432221122223334555 88888988766664 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||+|+.+|+++||||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998778999999999745789999999999999998765
No 99
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.51 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999999832 11245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++ ..++.+||+||+.|..... ..+.++..+++.++++.+||.+..+..+ ..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHH
Confidence 124699999997 4677789999999875432 2345556677899999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|++++..
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999874 99999999996 456 589999999999999999988764
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-44 Score=362.38 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=184.8
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 008676 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------- 125 (557)
.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 456777776 4567999999999999999999999999999999999999886 8999999987431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++.+ ++||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 489999999995 678899999999999999999987765
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
No 101
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-44 Score=358.07 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999998 3467999999999999999999999999999999999999886 999999998754334679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++. +..||||||||++|||+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987521 0 1235678899999998776664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5788899999999999999888754
No 102
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.5e-43 Score=354.28 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=184.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 6899999988 3456999999999999999999999999999999999998762 1128999999987532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++ +|++||+.+....+. ..+..+..+.+.++++.+||. +..++ .++.||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999998888 899999998754321 123344556788999999997 54554 44679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ +|+|++||++ .++.+++|++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999764 8999999996 57889999999999999999998
Q ss_pred cchH
Q 008676 279 TSAA 282 (557)
Q Consensus 279 ~~~~ 282 (557)
+++.
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 7765
No 103
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-44 Score=353.82 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 48999999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.+..... ...+..+.+.++++.+ ++.+..++. ++.||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998864321 1222334566777777 476555553 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999987899999999996 6789999999999999999999887663
No 104
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-43 Score=353.29 Aligned_cols=216 Identities=24% Similarity=0.402 Sum_probs=185.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 3 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 3 LYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred EEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHH
Confidence 7899999988 3457999999999999999999999999999999999999886 9999999986532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~ 149 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQK 149 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 123599999999999999999999986432100 0 0112334567889999999987777654 56999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999999976 68999999995 6788999999999999999999876
Q ss_pred hH
Q 008676 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.6e-43 Score=348.60 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 68899999883 2356999999999999999999999999999999999999886 9999999986431
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|++||+.+..... .....+..+.++++++.+++.+..++. ++.||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1246899999998888899999998875432 223444455678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++..+||++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999987789999999996 6788899999999999985
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-44 Score=347.98 Aligned_cols=201 Identities=30% Similarity=0.417 Sum_probs=172.5
Q ss_pred EEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Cccc
Q 008676 53 TWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (557)
+++|+++.|. + +.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... ..+.
T Consensus 1 ~~~~l~~~~~-----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeC-----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 3678888872 3 67999999999999999999999999999999999999886 9999999987531 2356
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 130 AAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 130 ~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
++|++|++. .+..+|++||+.+..... . . ..+++.++++.+||.+..++.+ +.||||||||++||||
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHH
Confidence 999999974 234579999998864322 1 1 1246788999999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999987899999999996 5788899999999999874
No 107
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=366.61 Aligned_cols=222 Identities=24% Similarity=0.297 Sum_probs=190.3
Q ss_pred EEEEEeEEEEEEccCc-----ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 008676 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~ 125 (557)
.|+++||++.|....+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 4899999999853211 1357999999999999999999999999999999999999885 8999999987521
Q ss_pred --------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 008676 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (557)
Q Consensus 126 --------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 194 (557)
.++.++||+|++ .+.|.+||.+++........ .....+.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2345566678999999999963 4555 5578
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
||||||||++|||||+.+|++||+||||++||..++.++++.|+++++ .|.|+|++|||. ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977 499999999995 678889999999999999
Q ss_pred EEEcCcchHH
Q 008676 274 VYFGETSAAF 283 (557)
Q Consensus 274 v~~G~~~~~~ 283 (557)
++.|+++++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988764
No 108
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.3e-43 Score=366.73 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=192.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++||++.|...+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3589999999985322 23569999999999999999999999999999999999998742348999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
+.+.++||+|++ .++|.+|+.+++........ ..+..+..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124699999997 68899999999987654321 23455666788999999999754322 2 2367899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999774 89999999995 6788899999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 988775
No 109
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-43 Score=355.16 Aligned_cols=215 Identities=30% Similarity=0.380 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++||++.+ +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRF-----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEe-----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999986521
Q ss_pred ------------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008676 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 126 ------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
..+.++|++|++.+++.+|+.||+.++.... ......+..+.+.++++.+|+.+..++. ++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hh
Confidence 1346999999999999999999998863211 1223444556788999999998776664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999774 89999999996 67889999999999999
Q ss_pred EEEEcCcchH
Q 008676 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
+++.|+.++.
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987655
No 110
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=355.67 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----------DKM--PWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (557)
....++|++|++.+++.+||+||+.++...... ... ...+..+.+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 123489999999999999999999986431100 000 11223456788899999987777654
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999995 6788999999999999
Q ss_pred eEEEEcCcchH
Q 008676 272 KTVYFGETSAA 282 (557)
Q Consensus 272 ~iv~~G~~~~~ 282 (557)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999987765
No 111
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=358.83 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=185.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
|.|+++|+++.|.......+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 358899999988421111146999999999999999999999999999999999999886 9999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 008676 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++ .+++ .||+||+.+..... ....++.+++++++++.+||.+ ..++. ++.|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSg 148 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSG 148 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCH
Confidence 124699999996 4555 69999998865432 1234445567888999999973 45554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987789999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 228 ~~~~~~ 233 (280)
T PRK13649 228 KPKDIF 233 (280)
T ss_pred CHHHHh
Confidence 987763
No 112
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=359.88 Aligned_cols=217 Identities=28% Similarity=0.451 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.|. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 489999999983 2356999999999999999999999999999999999999886 9999999987531
Q ss_pred --CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHH
Confidence 1256999999973 234569999998865422 2344555567899999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++|||+++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999995 67888999999999999999999887
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 229 ~~ 230 (283)
T PRK13636 229 VF 230 (283)
T ss_pred Hh
Confidence 65
No 113
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=358.09 Aligned_cols=215 Identities=30% Similarity=0.420 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcccEEEEccCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.. +...|+.||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHH
Confidence 12469999999753 34458999998864432 2233444566888999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++++..
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987789999999996 6788999999999999999999987754
No 114
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.9e-43 Score=352.41 Aligned_cols=219 Identities=28% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE-----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 4689999998 3467999999999999999999999999999999999995 454 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
....++|++|++.+++.+|++||+.+....... . .....+..+++.++++.+||.+ ..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886432210 0 0122334567889999999973 4555432 249999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++... ||++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987889999999996 577777 8999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2e-43 Score=347.40 Aligned_cols=209 Identities=26% Similarity=0.366 Sum_probs=176.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 6789999988421 11256999999999999999999999999999999999999886 99999999875311
Q ss_pred ----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 146999999999999999999999865432 1223344566788999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++ ..+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999976 489999999996 455 458999999999875
No 116
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-43 Score=347.14 Aligned_cols=206 Identities=31% Similarity=0.432 Sum_probs=178.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSF-----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEE-----CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 4688999988 2357999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... .....+.++++.++++.+|+.+..++. +++||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHH
Confidence 13569999999999999999999988643111 223344556788899999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999999996 678899999999999974
No 117
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-43 Score=346.46 Aligned_cols=205 Identities=31% Similarity=0.452 Sum_probs=173.6
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----Cc
Q 008676 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SF 127 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~ 127 (557)
+++|+++.+.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..
T Consensus 1 ~~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 1 ELKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred CceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHH
Confidence 36788888731 1257999999999999999999999999999999999999886 9999999987532 12
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 128 GTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 ~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+.++|++|++. .++.+|++||+.+..... .....+.++.+.++++.++|.+..++. ++.||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 146 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIA 146 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHH
Confidence 56899999974 366789999998865432 123334456788899999998766664 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999987799999999995 67888999999999985
No 118
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.6e-44 Score=398.75 Aligned_cols=246 Identities=30% Similarity=0.437 Sum_probs=202.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|...... .+ .......++|+|+++.|+ +++.+|+|+|+++++
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 47889999999999877643201 00 111223499999999993 257899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|.|+++|+ +|+|.+||.+++. .++.++||+|++.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 9999999998642 24679999999999995 999999987431
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.++++..+. +.+.++ .+++.+||.+|+ ++..||||||||++||||+++||++|+||||||+||+.++.
T Consensus 430 ----at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIA--NLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHH--hCcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 233333222 233333 346678999995 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+.+.++++. +|+|+|+++|++ +.+.+ +|+|++|++|++++.|+.+++..
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999886 578999999997 44544 99999999999999999988765
No 119
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=357.01 Aligned_cols=225 Identities=30% Similarity=0.385 Sum_probs=188.6
Q ss_pred cCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 008676 44 FSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (557)
Q Consensus 44 ~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~ 123 (557)
+++..+..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~~~~~~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~ 75 (265)
T PRK10575 4 YTNHSDTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPL 75 (265)
T ss_pred ccCCCCceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEeh
Confidence 333344469999999988 3467999999999999999999999999999999999999886 89999999874
Q ss_pred CC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 124 KL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 124 ~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.. ..+.++|++|++.+++.+|+.||+.+....... .........++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 21 124699999998888899999999875321110 00111233456888999999987667654 56999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999764 89999999996 678899999999999999999
Q ss_pred cCcchH
Q 008676 277 GETSAA 282 (557)
Q Consensus 277 G~~~~~ 282 (557)
|++++.
T Consensus 230 ~~~~~~ 235 (265)
T PRK10575 230 GTPAEL 235 (265)
T ss_pred cCHHHh
Confidence 987664
No 120
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=355.69 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58899999988 3467999999999999999999999999999999999999886 9999999987421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|+..+++.+|+.||+.++...... .........++++++++.+||.+..++.+ +.||||||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHH
Confidence 124699999999888889999999885311000 01111233456788999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987799999999996 678899999999999999999987665
No 121
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.3e-44 Score=349.08 Aligned_cols=209 Identities=33% Similarity=0.462 Sum_probs=174.1
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEE
Q 008676 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv 133 (557)
++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSY-----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEE-----CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 57888888 2356999999999999999999999999999999999999886 999999998653233569999
Q ss_pred ccCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 134 TQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 134 ~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++.++ ..+||+||+.+....... .....++.+++++++++.+++.+..++.+ ..||||||||++|||||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 9998763 347999999886432110 00112234467889999999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 6788999999999876 55554
No 122
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=354.53 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 12 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 12 QIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 59999999988 34569999999999999999999999999999999999987510 148999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++ +|++||+.+..... ..+..+.++++.++++.+++. +..++ .+..|||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSg 157 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLSG 157 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCH
Confidence 1346999999998888 89999999875432 223344456688899999984 33344 4457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 79999999995 6788999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 88765
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-43 Score=354.12 Aligned_cols=216 Identities=32% Similarity=0.444 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 37899999988 3467999999999999999999999999999999999999886 9999999986432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888899999998864321 1122333456788999999987777654 5799999999999
Q ss_pred HHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 206 a~aL~------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5789999999996 67888999999999999999998
Q ss_pred cchHH
Q 008676 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 76653
No 124
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=364.76 Aligned_cols=227 Identities=23% Similarity=0.284 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-~~~G~I~~~G~~~~~---- 125 (557)
.|+++||++.|..+. +...+|+||||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999984321 12469999999999999999999999999999999999987421 248999999987531
Q ss_pred -----CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++||+|++ .++|.+|+.+++........ ....++.++++.++++.+||.+..+. -+.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHH
Confidence 113699999997 57899999999876644321 23455666789999999999752111 12256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||. ..+.+++|+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999987 599999999995 6788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 988764
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=359.20 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=185.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 68899999883 2356999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .+...|+.||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHH
Confidence 1246999999975 356679999998875432 2344555667889999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++ ..||++++|++|++++.|++++..
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987899999999996 466 569999999999999999987754
No 126
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.5e-43 Score=347.08 Aligned_cols=214 Identities=31% Similarity=0.412 Sum_probs=176.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|... .....+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 6789999988311 00126999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 008676 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 124699999998 4677899999998865432111 11222222 35788999995 455554 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999996 5778899999999999998654
No 127
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.1e-43 Score=346.69 Aligned_cols=209 Identities=29% Similarity=0.443 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-cccE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-~~~~ 130 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRF-----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 4688999987 3467999999999999999999999999999999999999886 99999999875322 2569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+|++||+.+....+. .. ..++.++++.+|+.+..++.+ ..||||||||++|||+++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988754321 11 245778899999988777644 569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++.+
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999987899999999996 57889999999999999999998653
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=351.93 Aligned_cols=220 Identities=28% Similarity=0.377 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---C
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---L 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~---~ 125 (557)
.|+++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|++.. .
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 48999999998 3456999999999999999999999999999999999998762 124899999998753 1
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.+....+.. ....++..+++.++++.+++.+ ..++ .+..|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 152 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLND-----YPSNLSG 152 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhcc-----ChhhCCH
Confidence 124699999999999999999999987543210 1123344456788999999853 2333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 69999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 231 ~~~~~~ 236 (253)
T PRK14267 231 PTRKVF 236 (253)
T ss_pred CHHHHH
Confidence 877653
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.6e-43 Score=369.68 Aligned_cols=204 Identities=27% Similarity=0.390 Sum_probs=180.9
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CcccEEEEc
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKL---------SFGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~----~~~---------~~~~~~yv~ 134 (557)
...+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++ ... +.+.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999999999999999999986 9999999962 211 124699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008676 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
|++.+++.+||+||+.++.... ..++.+.++++.++++.+||.+..++.+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 2345566678899999999988777754 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++||+++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999774 89999999995 6889999999999999999999988764
No 130
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=355.81 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999998831 2356999999999999999999999999999999999999986 9999999987532
Q ss_pred CcccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 3666789999998875432 2334555677899999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++. .||++++|++|++++.|++++..
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 4565 59999999999999999987764
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=354.46 Aligned_cols=220 Identities=29% Similarity=0.429 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++||++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 48999999988 34679999999999999999999999999999999999998753246999999986421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++.+++.+||+||+.+......+. .....+.+.++.++++.+||.+..++.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1245899999999999999999998764211000 0112234567889999999987777654 569
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 489999999996 5788999999999999999
Q ss_pred EEcCcch
Q 008676 275 YFGETSA 281 (557)
Q Consensus 275 ~~G~~~~ 281 (557)
+.|++++
T Consensus 233 ~~g~~~~ 239 (262)
T PRK09984 233 YDGSSQQ 239 (262)
T ss_pred EeCCHHH
Confidence 9998765
No 132
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-43 Score=349.21 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYY-----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEe-----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 4689999988 3457999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+...... .. ..+..+++++.++ +.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHH
Confidence 12469999999999999999999988754321 11 1233566777776 55555554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ +++.++||++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999995 678889999999999999999988765
No 133
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=349.94 Aligned_cols=220 Identities=29% Similarity=0.389 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 48899999988 3457999999999999999999999999999999999998741 1248999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGe 199 (557)
.++.++|++|++.+++.+||+||+.+....... .....+..+.+.++++.+||.+ ..++ .+.+|||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~ 151 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDA-----PAGKLSGGQ 151 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----CcccCCHHH
Confidence 135699999999888899999999987543211 1123444567889999999864 2344 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999999864 79999999996 578889999999999999999988
Q ss_pred chHH
Q 008676 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 7653
No 134
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-43 Score=354.41 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 68999999883 2356999999999999999999999999999999999999886 8999999987531
Q ss_pred -CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++. .+...||.||+.+..... .....+..+++.++++.+||.+..++.+ +.||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1246999999963 333469999998764321 2234455567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999995 6788899999999999999999988764
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-43 Score=343.48 Aligned_cols=207 Identities=29% Similarity=0.412 Sum_probs=176.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. ++. .|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46889999882 232 3999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+...... .. ..+.++++.++++.+||.+..++.+ .+||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 1233456889999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999976 489999999995 6788999999999999998654
No 136
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=350.37 Aligned_cols=221 Identities=26% Similarity=0.343 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 48999999998 24569999999999999999999999999999999999864 111248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||+||+.+....+. .......+++++++++.+++.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13569999999988884 99999998754321 1123334567888999999854221111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 67889999999999999999998765
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 4
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=356.23 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+. +.+.+|+|+||++++||+++|+|+||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 378999999883 2345999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .+...||.||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHH
Confidence 1246899999973 333579999998765422 2334455567889999999987777754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 6788999999999999999999988764
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5e-43 Score=352.45 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6889999988 3467999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.+.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+++.+..++.+ ..||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 24689999998878889999999885321000 01112233456888999999987777654 5699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999996 678899999999999999999987664
No 139
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-43 Score=350.84 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 58999999998 34569999999999999999999999999999999999987621 138999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++ +||+||+.+...... .....+.++++.+.++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112334456788889998873 33444 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||+++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999996 5788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 887653
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-43 Score=345.99 Aligned_cols=214 Identities=29% Similarity=0.437 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFY-----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 4689999988 3467999999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999998875433 1223344567788999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999874 89999999996 678899999999999999999876654
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.1e-43 Score=353.15 Aligned_cols=222 Identities=26% Similarity=0.335 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008676 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++|+++.+.... .+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 378999999984210 11367999999999999999999999999999999999999886 9999999987531
Q ss_pred -------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008676 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++ .+++.+||+||+.+...... .....+..+++.++++.+||. +..++. +++|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhC
Confidence 124699999996 46778999999987643211 122334456788999999996 555654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +.+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999874 89999999995 6788899999999999999
Q ss_pred EEcCcchHH
Q 008676 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|++++..
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987654
No 142
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-44 Score=406.52 Aligned_cols=251 Identities=29% Similarity=0.434 Sum_probs=206.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|.+|+.+|+++.+..|..+... .+ .+ ...+....++|+|++++|+.+ ++..||+|+|+.|++
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~-~~----------~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~ 378 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYS-KG----------GR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIPS 378 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCccc-cc----------CC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeCC
Confidence 57899999999999988876522 10 01 122344569999999999754 356799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.+||+|||||||||++++|.++++|+ +|+|.+||.+++. .+.++|.|.|+|.+|.. |++||+.|+..-
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d- 453 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD- 453 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc-
Confidence 9999999999999999999999999996 9999999988542 24679999999998876 999999987421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.+.++..+ .+.+.+ ..|.+.+||.+|+.. -+||||||||++|||||++||+|||||||||+||+.++.
T Consensus 454 ----at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g-~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~ 526 (1228)
T KOG0055|consen 454 ----ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERG-VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER 526 (1228)
T ss_pred ----ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCC-CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence 22322222 222223 356788999999844 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+.+.|.+.. +|+|.|+++|+. +.+.+ +|+|++|++|++++.|+.+|+..
T Consensus 527 ~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 527 VVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 9999998874 589999999996 45655 99999999999999999999874
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-43 Score=348.43 Aligned_cols=223 Identities=26% Similarity=0.362 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 47899999998 34679999999999999999999999999999999999975312248999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++ .|++||+.++...+.. .......++++.++++.++|.+...... +..++.||||||||++|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 5999999987543211 0012334456788999999953221111 12456799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||++ +++.+++|++++|++|++++.|+.++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 89999999995 6788999999999999999999877653
No 144
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.7e-43 Score=344.23 Aligned_cols=211 Identities=30% Similarity=0.363 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++|+++.+.... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 489999999884210 1135999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++.+++.+|+.||+.+....+ .....+.++++.++++.++|.+..++.+ ..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 146999999999999999999998865332 1233445567889999999987766644 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +.+ +.+|++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 89999999996 455 5599999999999875
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=348.75 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58999999988 3457999999999999999999999999999999999999886 9999999987431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++ .||+||+.+....+ . ....++.++++.++|. +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1134577899999996 44555 44679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999977 489999999996 678889999999999999999988765
No 146
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.8e-43 Score=346.43 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|.++|. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999883 457999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1223344567789999999987777644 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++..
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999775 89999999996 6788999999999999999999877653
No 147
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.4e-43 Score=401.25 Aligned_cols=242 Identities=27% Similarity=0.341 Sum_probs=197.4
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..+.+|+.++++.+++.+. +. ... ......++++|++++|+. .++.+|+|+|+++++
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~----~~----------~~~----~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE----AK----------TDP----GKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc----Cc----------CCC----CCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 467889999999986554221 00 000 011235999999999942 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||++.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.+. +.+.+.++..|+ ++..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234455555554 4567899987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.++.+.|+++ ++|+|+++|++ +..+.+|+|++|++|++++.|+.+++.+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 58999999997 3467799999999999999999887653
No 148
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-40 Score=401.67 Aligned_cols=222 Identities=27% Similarity=0.388 Sum_probs=196.6
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...|+++||++.+.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLD 999 (2272)
T ss_pred CceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHH
Confidence 346999999999831 2467999999999999999999999999999999999999986 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.+||+||++.+++.+||+||+.+.++++ +.+.++.+++++++++.+||.+..|+.+ ++|||||||||+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLs 1071 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLS 1071 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999999999999999987654 2334455677899999999998887755 569999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++ +++..++|||++|++|+++..|+++++++
T Consensus 1072 LArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999995 599999999995 68889999999999999999999998876
Q ss_pred HH
Q 008676 285 FF 286 (557)
Q Consensus 285 ~f 286 (557)
.|
T Consensus 1150 ~~ 1151 (2272)
T TIGR01257 1150 CF 1151 (2272)
T ss_pred hc
Confidence 55
No 149
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=361.47 Aligned_cols=229 Identities=19% Similarity=0.231 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~~---- 125 (557)
.|+++||++.|..++ +.+.+|+||||+|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999985322 2356999999999999999999999999999999999998642 1248999999987531
Q ss_pred -----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008676 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
..+.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+..+ ..+.++++|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1246999999975 6788999999976432111000 112344567889999999975321 112256789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.+++|+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999874 99999999995 6888999999999999999
Q ss_pred EEcCcchHH
Q 008676 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|+++++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999987664
No 150
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=347.93 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 489999999983 4579999999999999999999999999999999999985 321248999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++.+|++||+.+..... ......+.++++.++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998764432 111233445668889999998642211111 145679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 58999999995 67889999999999999999998776
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 5
No 151
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-43 Score=352.32 Aligned_cols=220 Identities=29% Similarity=0.391 Sum_probs=186.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHH
Confidence 469999999998 3467999999999999999999999999999999999999886 8999999987432
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+|++||+.+......+. ....+...++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHHH
Confidence 1246999999999998899999998752111000 001123345678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 678999999999999999999988765
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 232 ~ 232 (265)
T PRK10253 232 V 232 (265)
T ss_pred h
Confidence 4
No 152
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=352.88 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=185.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHH
Confidence 35999999998831 2357999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++. .++.+||+||+.+..... .....+.++++.++++.+||.+..++.+ +.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHH
Confidence 1356999999974 577789999998865422 2234445567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ ++|||++||++ +++ ..||++++|++|+++..|++++.
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999876 59999999997 455 47999999999999999987765
Q ss_pred H
Q 008676 283 F 283 (557)
Q Consensus 283 ~ 283 (557)
.
T Consensus 230 ~ 230 (271)
T PRK13632 230 L 230 (271)
T ss_pred h
Confidence 3
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=350.39 Aligned_cols=217 Identities=23% Similarity=0.331 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999998831 1245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++. +++..|+++|+.+..... .....+..+++.++++.+++.+..++. ++.||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 677789999998875432 223444456788899999998777764 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.. +|++++|++|++++.|++++..
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 89999999997 45654 9999999999999999987764
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=351.13 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|+++|. .+.+|+|+++|++...
T Consensus 19 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 19 KMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred eEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 69999999998 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..+++.++++.+||.+...... +..++.|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13468999999988885 999999987543211 0123344566888999999964211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +.+.++||++++|++|+++..|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999995 67889999999999999999998766
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 249 ~ 249 (267)
T PRK14235 249 M 249 (267)
T ss_pred H
Confidence 5
No 155
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.9e-43 Score=366.11 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=180.2
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 008676 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---------~ 126 (557)
||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 4 ~l~~~~-----~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRL-----GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEE-----CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 778777 2333 4 999999999999999999999999999999999886 9999999987421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ ++|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 12334567889999999988777754 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ +++..++|++++|++|+++..|+++++.
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 6788999999999999999999987764
No 156
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-42 Score=339.70 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. .+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999882 2568999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++|||+
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987543211 1 1122345678899999998776664 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++ .++.+++|++++|++|+++..|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999995 67788999999999999998875
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=349.24 Aligned_cols=225 Identities=25% Similarity=0.366 Sum_probs=184.4
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~ 125 (557)
....++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|++...
T Consensus 10 ~~~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 10 APSKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CCceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 34469999999998 23569999999999999999999999999999999999986 211248999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.+++ .||+||+.+...... ..+..+..++++++++.+++.+...... +..+..||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 160 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGG 160 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHH
Confidence 1356999999998887 799999988754321 1234444567889999999853211111 1245679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||++ .++.+++|++++|++|+++..|+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999996 478999999996 57888999999999999999998
Q ss_pred cchHH
Q 008676 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
+++..
T Consensus 239 ~~~~~ 243 (260)
T PRK10744 239 TDTIF 243 (260)
T ss_pred HHHHH
Confidence 77653
No 158
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=346.71 Aligned_cols=221 Identities=24% Similarity=0.334 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCCC--
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~---~~~~~~~G~I~~~G~~~~~-- 125 (557)
.++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 58899999988 3467999999999999999999999999999999999973 331 138999999987532
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++.++|++|++.+++ .|++||+.+....+. ........+.++++++.+||.+...+... ..+..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~ 152 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHH
Confidence 1246999999998887 599999988754321 11123344667889999998643221111 24567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 479999999996 5788999999999999999999887
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14245 231 KIF 233 (250)
T ss_pred HHh
Confidence 764
No 159
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=354.18 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=186.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999998831 12469999999999999999999999999999999999998852113999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .++..||+||+.+..... ..+.++..+++.++++.+||.+..++. ++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246999999974 567789999998864332 234555567789999999998777664 4679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++ ..||++++|++|++++.|++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 89999999996 455 579999999999999999987764
No 160
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-43 Score=323.07 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=194.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
+...+++.+|.. ..+.+|+|+|++|.+||.++++||||||||||||+++|+.+|. .|+|.+||+++.-....-|
T Consensus 4 l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaerg 77 (259)
T COG4525 4 LNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAERG 77 (259)
T ss_pred eehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccce
Confidence 556778888742 2355999999999999999999999999999999999999996 8999999998764445569
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
.|+|++.++|.+||.||+.|+.+++ ++.+.++++++.+.+..+||++..++++ -+||||||||+.|||||+.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhc
Confidence 9999999999999999999998887 6788999999999999999998877755 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee--CCeEEEEcCcchHHHH
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF 285 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~~~~ 285 (557)
+|++|+||||+++||.-+++++-++|-++.+ .|+.++++||+. +|+.-+++++++|+ .|+++..=+++=...|
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999999999999999999999988866 799999999995 78888999999998 6899988777644444
No 161
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=348.94 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~--~~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++| ....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 58999999988 345799999999999999999999999999999999999863 21248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+...... +..+++|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13469999999988886 99999988653321 1123444566788899999854211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|+++.+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 67889999999999999999999876
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 53
No 162
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.2e-43 Score=372.33 Aligned_cols=227 Identities=31% Similarity=0.400 Sum_probs=199.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~----- 124 (557)
.|+++||++.|... ++...+++||||++++||++||+|+|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 58999999999765 33357999999999999999999999999999999999999876 456899999998531
Q ss_pred ----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.+.+.++||||++ .+.|-+||.+-+.-....+.. .+.++.++++.++|+.+||++.... +.++++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1236799999996 467778999999877665532 3477888999999999999886554 4589999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+ .-+.++||||++|++|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 699999999996 7899999999999999999999
Q ss_pred CcchHHH
Q 008676 278 ETSAAFE 284 (557)
Q Consensus 278 ~~~~~~~ 284 (557)
+++++..
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9999875
No 163
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=343.77 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
++++|+++.+. ++ ..|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 68999999983 22 23999999999999999999999999999999999886 8999999987532 125
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++.+ +.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987532110 11 2234566889999999987777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++.+|+++||||||+|||+.++..+.+.|+++++ .|+|+|++||++ .++.+++|++++|++|++++.|+.++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999976 489999999996 6788999999999999999999876654
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=349.32 Aligned_cols=223 Identities=26% Similarity=0.335 Sum_probs=185.1
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~- 125 (557)
...++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3469999999998 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008676 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
..+.++|++|++.+++ .||+||+.++.... ......+.++++.++++.++|.+..+.... ..++.|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-KSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCcccCCHHH
Confidence 1346999999998887 59999999875422 112233445678889999998643222222 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999996 479999999996 578899999999999999999998
Q ss_pred chH
Q 008676 280 SAA 282 (557)
Q Consensus 280 ~~~ 282 (557)
++.
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 765
No 165
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=364.91 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=180.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|++ ||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~-----~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQL-----GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEe-----CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 556 888887 2232 3 899999999999999999999999999999999886 9999999986421
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++.+||+||+.++... ...++++++++.+||.+..++. +++||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 135799999999999999999999886321 1235688999999998877764 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ +++..+||++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 68899999999999999999999887
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 74
No 166
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=343.19 Aligned_cols=213 Identities=29% Similarity=0.458 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Ccc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (557)
|+++|+++.+. .+ +|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46889999872 23 899999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++.+ +.||||||||++||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998875332 2233445566788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|++++.|+.++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999764 89999999996 678889999999999999999987654
No 167
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=354.67 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+..+....+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999998321000135999999999999999999999999999999999999886 8999999986421
Q ss_pred -----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++. +++ .||+||+.+..... .....+..++++++++.++|. +..++. ++.|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 1246999999973 444 59999999865322 123444456678899999994 555654 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999996 578899999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9887653
No 168
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=347.85 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. +.+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 48899999998 34579999999999999999999999999999999999986421 248999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++.+||+||+.+....+. .....+.+++++++++.+|+.+ ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 12469999999999999999999988754321 1123444567888999999842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee------CC
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G 271 (557)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999995 67889999999997 79
Q ss_pred eEEEEcCcchHH
Q 008676 272 KTVYFGETSAAF 283 (557)
Q Consensus 272 ~iv~~G~~~~~~ 283 (557)
++++.|++++..
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887653
No 169
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=345.55 Aligned_cols=219 Identities=24% Similarity=0.351 Sum_probs=183.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 358899999988 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++ +|++||+.+...... .....+..+++.++++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 149 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKLS 149 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCC
Confidence 1356999999998887 899999998754321 1123344566788999998853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 678899999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|+++++.
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 9987753
No 170
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=346.08 Aligned_cols=222 Identities=28% Similarity=0.387 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYY-----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 48999999988 34579999999999999999999999999999999999853 421238999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ +||+||+.+..... . .......++++.++++.+++.+...+.. +..++.|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1346999999998887 79999999875432 1 1122334466788899998753211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999996 67889999999999999999998876
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 53
No 171
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=381.34 Aligned_cols=220 Identities=23% Similarity=0.327 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.|+++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999998761 1389999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
++.++||+|++.+++.+||+||+.+....+.......++..++++++++.+|+.+..++.+ ++||||||||++
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 2459999999999999999999988754321111223444567889999999987777755 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999987899999999995 678899999999999999999998765
No 172
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-43 Score=327.92 Aligned_cols=218 Identities=30% Similarity=0.437 Sum_probs=187.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
|+.+||||++ .++.+|++||++++|||+++|+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHH
Confidence 6889999998 5688999999999999999999999999999999999999986 99999999975432
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.++-+.+||+..+-...||+|.+.++..-... .-...+..+.+++.|...++.+.+...+ ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHH
Confidence 24568999998875556999999998532211 1122244556788999999988776643 56999999999999
Q ss_pred HHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 207 LEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 207 ~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|.|+. ++++||||||||+||...+..++++.++++++|..|+++.||. +....+||||++|++||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 4569999999999999999999999999999999999999995 6789999999999999999999999
Q ss_pred hHHH
Q 008676 281 AAFE 284 (557)
Q Consensus 281 ~~~~ 284 (557)
++..
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
No 173
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=370.82 Aligned_cols=244 Identities=27% Similarity=0.372 Sum_probs=202.6
Q ss_pred hhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCC
Q 008676 3 DSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPG 82 (557)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~G 82 (557)
...|++|+.++.+++|+..- + ..++..... .++++|++++|+. +..++|+|+|+++++|
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~---------------~--~~~~~~~~~-~l~~~~vsF~y~~---~~~~~L~~~~l~l~~G 364 (573)
T COG4987 306 VIASARRLNDILDQKPEVTF---------------P--DEQTATTGQ-ALELRNVSFTYPG---QQTKALKNFNLTLAQG 364 (573)
T ss_pred HHHHHHHHhhhccCCcccCC---------------C--ccccCCccc-eeeeccceeecCC---CccchhhccceeecCC
Confidence 46789999999988887542 0 011111122 6999999999953 3457999999999999
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhccC
Q 008676 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (557)
|.+||+|+||||||||+++|.|.++|+ +|+|.+||.++... ++.+++++|..++|.+ |+|+||..+..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~--- 437 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP--- 437 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC---
Confidence 999999999999999999999999997 99999999875422 3468999999999988 99999988632
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008676 158 PDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
+ .+. +.+.++++.+||+ +..||.+|+ .++.||||||||++|||+|++|.++++|||||.|||+.++
T Consensus 438 -~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 438 -D-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred -C-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhH
Confidence 1 223 3356677777774 356778887 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.++++.|.+-++ |+|+|++||+... .+.||||++|++|+++++|...++..
T Consensus 511 ~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 511 RQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999988654 8999999999753 67899999999999999999888754
No 174
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-42 Score=387.52 Aligned_cols=242 Identities=21% Similarity=0.271 Sum_probs=199.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|++|+.++++.++.... . . +.. .....++++|+++.|+ .++.+|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~-~----------~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N-D----------DRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C-C----------ccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 467899999999975543211 0 0 000 0122599999999984 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .+++++||||++.+|+. |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999996 8999999997542 24679999999999998 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
.+. +++.++++.+|+ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335566666664 4567899987 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++.+ ++|+|++||++ .....||+|++|++|+++..|+.+++.+
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999864 69999999997 3467799999999999999999988753
No 175
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=388.54 Aligned_cols=246 Identities=26% Similarity=0.374 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+. +.. .. .+..-.++++|+++.|+. .++.+|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~----~~~---------~~-----~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE----GKR---------VI-----ERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC----CCc---------CC-----CCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 456788999999876544221 000 00 011225999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 441 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR--- 441 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC---
Confidence 9999999999999999999999999996 8999999998542 24679999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
++..+.+ ++.+.++..| +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 442 -~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 442 -TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1112222 3444455444 45667999987 457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++ ...+.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 516 ERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999885 469999999997 3577899999999999999999887653
No 176
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.7e-42 Score=343.19 Aligned_cols=200 Identities=33% Similarity=0.478 Sum_probs=172.4
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHH
Q 008676 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999999886 999999998764322335899999999999999999988
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
......+ .....+.++++.++++.+||.+..++.+ ++||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 2234445567889999999987777654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 232 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999764 89999999996 67889999999999999998886554
No 177
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=344.04 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~--~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999982 45799999999999999999999999999999999998753 11248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ +|++||+.+....+. ..+..+.++.+.++++.+++.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346999999998887 899999998754321 1123344567788888888753211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999995 67889999999999999999998776
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 5
No 178
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-42 Score=349.40 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008676 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++||++.|..+. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 489999999984211 01356999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 008676 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++. +++.+|+.|++.+...... .....+..+.+.++++.+||. +..++. +..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 1246999999974 6788899999988654321 123344456788999999994 455553 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999774 89999999996 6788899999999999999998
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 876653
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=379.88 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+.++|++|++.+++.+||+||+.++...... ......+.++++.++++.+||.+..++.+ ..|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHH
Confidence 124699999999999999999999986432210 11223444567889999999988777755 46999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|+++++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999987899999999996 678899999999999999999998765
No 180
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.2e-43 Score=390.47 Aligned_cols=246 Identities=28% Similarity=0.404 Sum_probs=200.8
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|.... . .+ ... ......++++|+++.|+. +++.+|+|+|+++++
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~-~-~~-----------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTF-P-TT-----------STA----AADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-C-cc-----------cCC----CCCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 568899999999987765321 0 00 000 011235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999986 9999999997542 23579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..+ ++.+.+.++..++. +..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 112 23456677777764 457899987 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
..+.+.|+++. +++|+|+++|+++ . ...+|+|++|++|++++.|+.+++.+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999985 5899999999974 4 45699999999999999999877653
No 181
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=345.03 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.-+++|+++.+ +.+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 34688999988 34679999999999999999999999999999999999976 211248999999986421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+....+ .......+.++.+.++++.+||.+...+.+. ..+.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHH
Confidence 13569999999988886 9999998874332 1111223344567889999999653222221 245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 489999999996 57888999999999999999998765
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 5
No 182
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=351.19 Aligned_cols=219 Identities=26% Similarity=0.402 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCc-ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 51 RLTWKDLTVMVTLSNG-ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
.++++|++++|....+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 4899999999842110 1356999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 --SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 --~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++. ++ ..||.||+.|..... ..+..+.+++++++++.+||.+..++.+ +.|||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~q 151 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQ 151 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHH
Confidence 1356999999974 44 469999999875432 2334555677899999999988777754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.. ||++++|++|++++.|+++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 499999999996 45655 9999999999999999988
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 764
No 183
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.1e-42 Score=343.80 Aligned_cols=198 Identities=29% Similarity=0.429 Sum_probs=171.4
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CcccEEEEc-cCCCCCCC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIGT 142 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~-Q~~~l~~~ 142 (557)
.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 457999999999999999999999999999999999999886 9999999986421 235689998 55678888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 008676 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 222 (557)
+|++||+.+..... .....+..++++++++.+|+.+..++.+ ..||||||||++||++|+.+|+++||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875432 2233444566788999999988877755 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 89999999996 5788999999999999998765
No 184
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=344.39 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 48899999988 3467999999999999999999999999999999999998741 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++ +|++||+.+...... .......++.+++.++.+++.+..+... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHH
Confidence 1356999999998887 799999998754321 1123334456788899999864211111 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999965 78999999996 57889999999999999999998876
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
+.
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
No 185
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.1e-42 Score=396.40 Aligned_cols=248 Identities=26% Similarity=0.390 Sum_probs=200.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.+++... +..+ . . .......++++|++++|+. ..+.+|+|+|+++++
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~----~~~~---------~--~-~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE----GTRF---------L--H-RPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------C--C-CCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 467899999999987664221 0000 0 0 0011235999999999942 245699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999996 9999999998542 24679999999999987 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.+ .+.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 12232 2344444444 45677999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
+..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+.
T Consensus 637 e~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 637 EERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999986 4799999999973 4678999999999999999998887653
No 186
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.7e-43 Score=398.57 Aligned_cols=251 Identities=25% Similarity=0.309 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.++++.++.... . ..+ .. +... .........++++|++++|+. .++.+|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~---~~~--~~---~~~~-~~~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-E---EEE--AP---AAGS-EPSPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-c---ccc--cc---cccc-ccCCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 467899999999987655321 0 000 00 0000 000111235999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--- 577 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--- 577 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC---
Confidence 9999999999999999999999999996 9999999998532 24679999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..++ ++..||.+|+ .+.+||||||||++|||||+++|++||||||||+||+.+
T Consensus 578 -~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 578 -P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1 12222 24444555444 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|++ .++|+|++||+++ ....||+|++|++|++++.|+.+++.+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4799999999963 456799999999999999999888754
No 187
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.8e-43 Score=398.18 Aligned_cols=245 Identities=30% Similarity=0.407 Sum_probs=196.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.+|..+... . ..+ ......++++|+++.|+.. +++.+|+|+|++++|
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~---~----------~~~----~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG---T----------LAP----LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC---C----------CCC----CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57889999999998766533200 0 000 0112359999999998521 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||++.+. .+++++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998542 23679999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+. +.+.+.++..++ ++..||.+|+ ...+||||||||++|||||+++|++||||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1122 234455555554 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 236899999999963 467799999999999999999888754
No 188
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.5e-42 Score=345.30 Aligned_cols=216 Identities=27% Similarity=0.343 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-----~~~ 125 (557)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 489999999883 357999999999999999999999999999999999999886 9999999986 421
Q ss_pred ---------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 008676 126 ---------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (557)
..+.++|++|++ .+++.+|++||+.+...... .....+.+..+.++++.+++.+ ..++ .+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----LPT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCc
Confidence 123599999997 36778899999976532211 1122334566788999999964 4555 345
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +.+.+++|++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 89999999995 67888999999999999
Q ss_pred EEEEcCcchH
Q 008676 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999987765
No 189
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=346.25 Aligned_cols=219 Identities=26% Similarity=0.350 Sum_probs=180.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 358999999988 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+ ..++ .+..||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 166 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALSLS 166 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----CcccCC
Confidence 13469999999988885 99999988643221 1112233455777888888853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|++++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 68999999996 578899999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 245 ~~~~~~~ 251 (268)
T PRK14248 245 DQTEQIF 251 (268)
T ss_pred CCHHHHH
Confidence 9877653
No 190
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=342.55 Aligned_cols=220 Identities=26% Similarity=0.363 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
+.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 358899999998 34679999999999999999999999999999999999987631 137999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCC
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LS 196 (557)
.++.++|++|++.+++.+|+.||+.+...... ....++..+.+.+.++.+++. +..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 13469999999999999999999987654321 112233445667777777764 23344 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 69999999996 678889999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|++++..
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9887653
No 191
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.3e-43 Score=398.10 Aligned_cols=246 Identities=23% Similarity=0.289 Sum_probs=198.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+.+|.+|+.++++.++..+.. ... .. .......++++|+++.|+ .++.+|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~----~~~-------~~-----~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINK----KKR-------TE-----LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCccccc----ccc-------cC-----CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 4678999999999866553220 000 00 001122599999999984 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+||||||||||+|+|+|+++|+ +|+|++||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-- 573 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-- 573 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999997532 24679999999999987 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..+ +++..||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 574 -~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 574 -E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1 12222 2334444444 34567999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999973 467899999999999999999887654
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=348.03 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=180.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 469999999998 34679999999999999999999999999999999999976310 148999999987421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.++.++|++|++.+++. ||+||+.+.+..+ ... .+.++++.++++.+++........ +..+..||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~ 160 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQ 160 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHH
Confidence 12469999999988885 9999999876432 111 223455677888888743211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC----------
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG---------- 270 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~---------- 270 (557)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccc
Confidence 999999999999999999999999999999999999999964 79999999996 688999999999996
Q ss_pred -CeEEEEcCcchHH
Q 008676 271 -GKTVYFGETSAAF 283 (557)
Q Consensus 271 -G~iv~~G~~~~~~ 283 (557)
|++++.|+++++.
T Consensus 239 ~g~~~~~~~~~~~~ 252 (269)
T PRK14259 239 VGYLVEFNETKKIF 252 (269)
T ss_pred cceEEEeCCHHHHH
Confidence 6789999887764
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-42 Score=333.86 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~ 126 (557)
.+.|+|+++.|+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999997542 35679999999999999999999999999999999999998321249999999987532 2
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++.+||+||+.+..... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998753210 222 3457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+||+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.++||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999775 6787777776556888999999999999998765
No 194
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-42 Score=336.41 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=172.7
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 008676 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---------~ 126 (557)
||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 5 ~l~~~~-----~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRL-----PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEec-----CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 888888 33444 99999999 999999999999999999999999886 9999999986421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++. ++.||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 346999999999999999999998864321 2233446688899999998766664 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999995 6788999999999999998765
No 195
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-42 Score=342.51 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 48899999988 3467999999999999999999999999999999999998752 0238999999987521
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
.++.++|++|++.+++ .||.||+.+..... ........++++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1346999999999887 79999998874332 11122334466778888888754221111 12456799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 678999999999999999999987654
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=378.38 Aligned_cols=218 Identities=23% Similarity=0.353 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++....
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
.+.++||+|++.+++.+||+||+.++..... ... ....+.++++.++++.+||.+..++.+ ++||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 2459999999999999999999987532110 001 123344567889999999988777755 46999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999995 6788999999999999999999987
Q ss_pred hH
Q 008676 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 75
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-42 Score=342.05 Aligned_cols=222 Identities=24% Similarity=0.357 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 48899999988 34569999999999999999999999999999999999988741 126999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+....+.. ...++..+.+++.++.+++.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998885 999999987543211 112233455777888888753221111 2255679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 589999999995 67889999999999999999998776
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 233 ~~ 234 (251)
T PRK14249 233 IF 234 (251)
T ss_pred HH
Confidence 53
No 198
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=342.23 Aligned_cols=222 Identities=27% Similarity=0.344 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999988 34679999999999999999999999999999999999875321 138999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13469999999988885 99999998755431 1122334456788888888854221111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67888999999999999999998876
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 235 ~~ 236 (253)
T PRK14261 235 IF 236 (253)
T ss_pred HH
Confidence 53
No 199
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8e-43 Score=317.09 Aligned_cols=211 Identities=31% Similarity=0.412 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+.+++++.+.... ....||++|++.+++||.++|+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 477888888774332 3467999999999999999999999999999999999999986 999999998742
Q ss_pred ---CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.+.+++|+|+|...+.|+||..||+...+.++-. +..+......++|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 1346799999999999999999999998877632 334455678899999999887766 56789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
||+||||++..|++||.||||.+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|||.+-|..|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999876 699999999997 4678899999999999874
No 200
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=347.01 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=182.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCC-
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-----~~~G~I~~~G~~~~~- 125 (557)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999988 34679999999999999999999999999999999999987730 127999999987532
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 124589999998766668999999875321100 0111123345678899999998766654 457999999
Q ss_pred HHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 201 qRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999875 89999999996 678889999999999
Q ss_pred CeEEEEcCcchH
Q 008676 271 GKTVYFGETSAA 282 (557)
Q Consensus 271 G~iv~~G~~~~~ 282 (557)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999987765
No 201
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=345.34 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 368999999998 3467999999999999999999999999999999999998751 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++ .|++||+.+..... ...+..+.+..+.+.++.+++.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999998864322 112344445567788999998753322221 245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67889999999999999999999876
Q ss_pred HH
Q 008676 282 AF 283 (557)
Q Consensus 282 ~~ 283 (557)
..
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 63
No 202
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=340.07 Aligned_cols=223 Identities=25% Similarity=0.348 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 358999999988 34679999999999999999999999999999999999865 321238999999986521
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++ .|++||+.+....+.. ......++.+.+.++.+++........ +..+..||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHH
Confidence 1356999999998888 6999999987543211 112222345677788887642211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++.+++|++++|++|+++..|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 58999999996 6788999999999999999999877
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 233 ~~~ 235 (252)
T PRK14255 233 QMF 235 (252)
T ss_pred HHh
Confidence 653
No 203
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-42 Score=366.88 Aligned_cols=226 Identities=28% Similarity=0.344 Sum_probs=194.4
Q ss_pred ceEEEEEeEEEEEEccC------cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008676 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
...++++||++.|..++ .+...+++||||++.+||++||+|+||||||||.|+|+|+.+|+ +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 34588999999997532 23457899999999999999999999999999999999999996 9999999976
Q ss_pred CC-------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008676 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 123 ~~-------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
.. ..++++-+|+||+ .+.|.+||++++.-....... ....+.++++.++++.+||... +.+.+++
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1234678888886 689999999999987665432 2356677889999999999852 2334788
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+||||||||++|||||+.+|+++++|||||.||+..+.+++++|+++.+ .|.|.|++|||. ..+..+||||.+|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 9999999999999999999999999999999999999999999999987 499999999995 78999999999999999
Q ss_pred EEEEcCcchHHH
Q 008676 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
+|+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998877653
No 204
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-42 Score=395.43 Aligned_cols=251 Identities=29% Similarity=0.389 Sum_probs=208.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|+.|+.+++++++.+|..+..-.. .... ......++++|+++.|+.+ ++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~-----------~~~~----~~~~G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTS-----------GGKL----PNVKGDIEFRNVSFAYPTR--PDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCC-----------CCcc----ccceeEEEEeeeEeeCCCC--CCchhhcCCcEEecC
Confidence 4788999999999999965531100 0001 1123459999999999753 567899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.+||+|||||||||.+.+|-..++|+ +|.|.+||++++. .++++|.|.|+|.||.. |++|||.|+.
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~--- 1088 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS--- 1088 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC---
Confidence 9999999999999999999999999996 9999999998643 25789999999999987 9999999982
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
. ..+.++..+ .+.+.+ .+|++.+||.||+ +..+||||||||++||||+++||+||||||.||+||+++.+
T Consensus 1089 -~-~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1089 -E-EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred -C-CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 1 134444322 222222 4789999999998 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+-+.|.+.. .|+|.|++.|+++ ..+.||.|.|+++|+++++|+-+++..
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999874 6899999999975 468899999999999999999888765
No 205
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=344.13 Aligned_cols=222 Identities=20% Similarity=0.331 Sum_probs=179.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
..++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 23 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWY-----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 369999999988 34569999999999999999999999999999999999986 211248999999987521
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++. ||+||+.++...+ ........++.+.+.++.+++.+...... +..+..||||||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHH
Confidence 13569999999988875 9999999875432 11122233455677777775432111111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 79999999995 6788999999999999999999877
Q ss_pred hH
Q 008676 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 252 ~~ 253 (271)
T PRK14238 252 KI 253 (271)
T ss_pred HH
Confidence 65
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=344.49 Aligned_cols=221 Identities=26% Similarity=0.346 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFY-----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEE-----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 59999999998 2457999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999988886 99999988754321 1122333456788888888864211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++.+.||++++|++|++++.|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999999996 67889999999999999999998765
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 4
No 207
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.8e-42 Score=333.27 Aligned_cols=197 Identities=32% Similarity=0.437 Sum_probs=169.4
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 008676 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---~----- 125 (557)
++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.. .
T Consensus 1 i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKF-----GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEE-----CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 36788887 3457999999999999999999999999999999999999886 999999998732 1
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++.+ ++||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1246999999999999999999999875432 2233445567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ .. .+.||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 99999999999999999999999999999999999987799999999996 33 5789999875
No 208
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=342.02 Aligned_cols=223 Identities=26% Similarity=0.391 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 58999999998 23569999999999999999999999999999999999988631 237999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999988888 799999988653321 1123344566788999999854222111 2245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeC-----CeEEE
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~ 275 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++.++||++++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 688999999999999 99999
Q ss_pred EcCcchHH
Q 008676 276 FGETSAAF 283 (557)
Q Consensus 276 ~G~~~~~~ 283 (557)
.|+++++.
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99988764
No 209
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=346.09 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 4899999999841 11245999999999999999999999999999999999999886 9999999987532
Q ss_pred CcccEEEEccCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566789999998864322 223445556788999999998777664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++. .+|++++|++|+++..|++++..
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 4565 69999999999999999987764
No 210
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=9.5e-42 Score=335.50 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 6889999987321 11267999999999999999999999999999999999999886 9999999987531
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998754321 123445566789999999998777664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++ + +.++||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999976 589999999996 3 5689999999999986
No 211
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.1e-42 Score=375.38 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.+.++|++|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 23599999999999999999999875321 1234466889999999987777755 469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999999999999988899999999995 6788999999999999999999987653
No 212
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.4e-42 Score=380.25 Aligned_cols=246 Identities=28% Similarity=0.419 Sum_probs=195.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.++.... + ...+ .....++++|+++.|+. +++.+|+|+|+++++
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~----~----------~~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP----A----------MPLP-----EPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC----C----------CCCC-----CCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 468899999999976554221 0 0000 11235999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||||++.+|+. |++||+.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987532 23579999999999987 99999985421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
..+.++..+ ..++.++. +++..||.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 122222211 12233333 34456888876 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+.+.|+++..+|+|+|+++|++. ..+.||++++|++|++++.|+.++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998767899999999973 45789999999999999999987654
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=352.13 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=186.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~--- 124 (557)
..++++|+++.+.. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999842 2356999999999999999999999999999999999997531 124899999999863
Q ss_pred ----CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008676 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 125 ----~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
..++.++||||++.+++ .|++||+.|+.... ... .+..++.+.++++.++|.+..++.++. ++..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12356999999999886 69999999875332 122 222344567888988886554555543 667899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++|+|++||++ ..+.++||||++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999875 69999999995 678889999999999999999999
Q ss_pred chHH
Q 008676 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8874
No 214
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=341.76 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~--~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 58999999988 345699999999999999999999999999999999999875311 38999999987521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++ +||+||+.+....+. ..++.+..+++.++++.+++.+ ..++ .+..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~ 153 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSG 153 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCH
Confidence 1246999999999887 799999988754321 1223344456778899888842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-----CCe
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGK 272 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~ 272 (557)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999999999865 69999999996 68899999999998 599
Q ss_pred EEEEcCcchHH
Q 008676 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|++++..
T Consensus 232 i~~~~~~~~~~ 242 (259)
T PRK14260 232 MVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHHHHh
Confidence 99999988763
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=345.31 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=181.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 36 ~~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYY-----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 34468999999988 23569999999999999999999999999999999999854 310138999999986421
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCC
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRG 194 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 194 (557)
.++.++|++|++.+++. ||+||+.+....+. ..+....++++.++++.+++. +..++ .+..
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 182 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALG 182 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chhh
Confidence 13469999999988875 99999998754321 112233345677888888874 33343 4567
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 68999999996 6788999999999999999
Q ss_pred EEcCcchHH
Q 008676 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
..|+++++.
T Consensus 261 ~~g~~~~~~ 269 (286)
T PRK14275 261 EHAPTAQLF 269 (286)
T ss_pred EeCCHHHHH
Confidence 999877653
No 216
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=339.07 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 48999999998 34679999999999999999999999999999999999986 211248999999987421
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (557)
.++.++|++|++.+++ .||+||+.+...... .......++.++++++.+++.. ..+. .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1346999999998886 699999988654321 1112233456788899999852 2333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 68999999996 6788999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 87765
No 217
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=340.51 Aligned_cols=223 Identities=22% Similarity=0.275 Sum_probs=184.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~ 125 (557)
.+..+.++++++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|+++|++...
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 5 APIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CCceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 45568899999888 35679999999999999999999999999999999999987511 148999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.++ .+|++||+.+....+. . ..+..+++.++++.++|.+..+...+ ..++.||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G 153 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGG 153 (261)
T ss_pred cccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHH
Confidence 134699999999887 5899999998754321 1 12334578889999998653322222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee--------C
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------G 270 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~ 270 (557)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|++||++ +++.++||++++|+ +
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~ 231 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRT 231 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCC
Confidence 9999999999999999999999999999999999999999995 479999999996 57889999999996 8
Q ss_pred CeEEEEcCcchHH
Q 008676 271 GKTVYFGETSAAF 283 (557)
Q Consensus 271 G~iv~~G~~~~~~ 283 (557)
|++++.|+.++..
T Consensus 232 G~i~~~g~~~~~~ 244 (261)
T PRK14263 232 GYLVEMGPTAQIF 244 (261)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999877653
No 218
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.9e-41 Score=339.23 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC---C
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-~~~G~I~~~G~~~~~---~ 126 (557)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999987 2459999999999999999999999999999999999988710 138999999987532 1
Q ss_pred cccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHH
Q 008676 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 127 ~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerq 201 (557)
.+.++|++|++. +.+.+|+.+++.+.+... .... ..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 456679999987654322 1111 2356788999999976 2344 44679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.+++|++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 489999999996 6788899999999999999999887
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
+..
T Consensus 227 ~~~ 229 (254)
T PRK10418 227 TLF 229 (254)
T ss_pred HHh
Confidence 653
No 219
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.1e-42 Score=341.74 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=169.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468899998731 2356999999999999999999999999999999999999886 9999999986431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
++.++|++|++.+++ .||+||+.+.... ....... ....+.++.+ ++.+..+. .+++|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999988775 5999999874311 1111111 1122334443 33333333 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +++ ..||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999964 89999999997 455 56999999999999999988
Q ss_pred chHH
Q 008676 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7654
No 220
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.5e-42 Score=381.73 Aligned_cols=245 Identities=29% Similarity=0.433 Sum_probs=195.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+... + ..+ . ......++++|+++.|+ +++.+|+|+|++++|
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~--~-----------~~~--~-~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP--G-----------AID--L-GRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC--C-----------CCC--c-CCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 35677888888887654432100 0 000 0 01122599999999984 225699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++||+.++.
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 433 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--- 433 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999996 9999999987542 13679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..++++ +.+.++..+ +++..||.+|+ ..+.||||||||++|||||+++|++++||||||+||+.+
T Consensus 434 -~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 434 -P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred -C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1 122222 334444444 34567888886 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ ...+.+|+|++|++|+++..|+.++..
T Consensus 507 ~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999875 479999999997 356789999999999999999977664
No 221
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-42 Score=363.40 Aligned_cols=212 Identities=30% Similarity=0.423 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++|+|+++.|. ++++||+++||+|++||-+||+|+|||||||++|+|.++.+ + +|+|.+||++++.
T Consensus 351 ~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 351 SIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLES 422 (591)
T ss_pred cEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHH
Confidence 499999999993 34559999999999999999999999999999999999988 3 8999999998643
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (557)
.++.|||||||..+|.+ ||.+|+.++..- .+.+ .+.+..++.| +++.++|.||+ +...||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGG 491 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGG 491 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHH----HHHHHHHHcCcHHHHHhccccchhhHhh-cccccccc
Confidence 24669999999999988 999999998432 2232 2444444444 46788999997 56679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|||||+||||+++||+|+++|||||+||+++..++++.+++. ..|+|+|++.|+. .....||+|++|++|++...|+
T Consensus 492 ekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 999999999999999999999999999999999999999993 4689999999995 4678899999999999999999
Q ss_pred cchHHH
Q 008676 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
-+++..
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 988765
No 222
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-41 Score=371.95 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=186.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 6889999988 3467999999999999999999999999999999999998761 138999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.++|.+.. ++. ++.|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998864332110 122344456788999999997654 343 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999999988899999999995 678899999999999999999987654
No 223
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-41 Score=335.95 Aligned_cols=204 Identities=28% Similarity=0.332 Sum_probs=171.2
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC---CcccEEEEccCCC--CCCCCC
Q 008676 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~-~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~--l~~~lT 144 (557)
+|+|+|+++++||+++|+||||||||||+|+|+|+++|. ...+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 0028999999987532 1246999999974 567789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
+.||+.+..... .....+.++++.++++.+++.+ ..++ .+..|||||||||+|||+|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998764332 1112334567889999999973 3444 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+|||+.++..+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999774 89999999996 6788999999999999999999877653
No 224
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.8e-41 Score=325.95 Aligned_cols=188 Identities=56% Similarity=0.868 Sum_probs=164.0
Q ss_pred eEEEEEeEEEEEEccC-cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 008676 50 ARLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~- 125 (557)
..++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchH
Confidence 3589999999984210 01257999999999999999999999999999999999998 775 9999999987542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+..... .||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~ 121 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVS 121 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHH
Confidence 2356999999999999999999997642110 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998779999999999754688899999999999998764
No 225
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.8e-41 Score=338.14 Aligned_cols=217 Identities=28% Similarity=0.334 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-----~~~ 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 48999999998 3456999999999999999999999999999999999999886 8999999875 321
Q ss_pred ---------CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 008676 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (557)
..+.++|++|++. +++.+|+.||+.+..... . .....+..+.+.++++.+++.+ ..++. ++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----ch
Confidence 0135899999974 456679999997643211 1 0112233467889999999963 55554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++..++|++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999876 489999999995 67888999999999999
Q ss_pred EEEEcCcchHH
Q 008676 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|++++..
T Consensus 227 i~~~~~~~~~~ 237 (253)
T TIGR02323 227 VVESGLTDQVL 237 (253)
T ss_pred EEEECCHHHHh
Confidence 99999876553
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=6.9e-41 Score=335.96 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~--~~~~~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 58999999988 245699999999999999999999999999999999997 3554 8999999987532
Q ss_pred --Ccc-cEEEEccCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 --~~~-~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
..+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 378999999999999999999875432110 0111223345678899999997 34555432 24999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (557)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 556666 899999999999999
Q ss_pred cCcchH
Q 008676 277 GETSAA 282 (557)
Q Consensus 277 G~~~~~ 282 (557)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 988743
No 227
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=343.42 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~~-- 125 (557)
..|+++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 358999999998 34579999999999999999999999999999999999986310 138999999987421
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (557)
..+.++|++|++.+++. ||+||+.+....+. ... +..++++++++.++|.+ ..++ .+.+||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 99999998754321 122 33456888999999853 2333 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE-EeeCCeEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv~ 275 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++ .++.+++||++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999995 67888999975 679999999
Q ss_pred EcCcchH
Q 008676 276 FGETSAA 282 (557)
Q Consensus 276 ~G~~~~~ 282 (557)
.|++++.
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987664
No 228
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.8e-41 Score=340.33 Aligned_cols=222 Identities=25% Similarity=0.291 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEEcc----CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 008676 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~- 125 (557)
.|+++|+++.+... ...++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 37899999988410 001367999999999999999999999999999999999999885 9999999986431
Q ss_pred -------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008676 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (557)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. +..++. ++.|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccC
Confidence 134699999997 46677899999976543111 123444556789999999996 455654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ +++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999764 89999999996 6788899999999999999
Q ss_pred EEcCcchHH
Q 008676 275 YFGETSAAF 283 (557)
Q Consensus 275 ~~G~~~~~~ 283 (557)
+.|++++..
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887654
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=318.01 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+.+||.+.| +...+|++||++.++|+++.|+|.|||||||+|+||.-+..|+ .|+|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48889999888 5788999999999999999999999999999999999998886 9999999975311
Q ss_pred ------C-------cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008676 126 ------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (557)
Q Consensus 126 ------~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (557)
. +.+.++|+|..+++++|||.||+.-+..-- -+.++.+..++++.+|..+|+.+..|. +|
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 0 124689999999999999999987653211 135677888899999999999988876 56
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+...+|+.|++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 67999999999999999999999999999999999999999999999999999999999994 68889999999999999
Q ss_pred EEEEcCcchHH
Q 008676 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+-++|+|+++.
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999998874
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=378.55 Aligned_cols=223 Identities=27% Similarity=0.338 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 008676 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~ 123 (557)
..|+++||++.|...++ ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 35999999999842110 1246999999999999999999999999999999999999886 89999999865
Q ss_pred CC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 008676 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (557)
Q Consensus 124 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 192 (557)
.. .++.++||+|++ .+++.+||.||+.+...... .....+.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 21 134699999997 58899999999988654321 112344557788999999996 455654 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+ +.+.++||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999999874 89999999995 6889999999999999
Q ss_pred eEEEEcCcchHH
Q 008676 272 KTVYFGETSAAF 283 (557)
Q Consensus 272 ~iv~~G~~~~~~ 283 (557)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=371.00 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=183.8
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------cc
Q 008676 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FG 128 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~------~~ 128 (557)
+|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.... .+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 5788887 3467999999999999999999999999999999999999886 99999999875321 24
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+.............+..++++++++.+++.+..++.+ .+|||||||||+||++
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987632110101123344567889999999987777654 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999988899999999995 678899999999999999999987764
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=341.22 Aligned_cols=223 Identities=24% Similarity=0.294 Sum_probs=180.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 17 ~~~~l~~~nl~~~~-----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 17 DHSVFEVEGVKVFY-----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CCceEEEeeEEEEe-----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 34479999999998 3457999999999999999999999999999999999997632 1248999999987521
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++. ||.||+.+....+ ... ...++.+.+.++.+++.+...... +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgG 165 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGG 165 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHH
Confidence 13569999999988875 9999998864432 111 122344667788888742211111 1245679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee---------
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------- 269 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------- 269 (557)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999965 68999999996 67889999999998
Q ss_pred CCeEEEEcCcchHH
Q 008676 270 GGKTVYFGETSAAF 283 (557)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (557)
+|++++.|+++++.
T Consensus 244 ~G~~~~~g~~~~~~ 257 (274)
T PRK14265 244 RGKLVEFSPTEQMF 257 (274)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999988764
No 233
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=337.74 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=172.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. .++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999998831 1236999999999999999999999999999999999999886 9999999986431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
.+.++|++|++.+++ .||+||+.+.... ....+.. ..+.+.++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999875321 1111111 1234455555 45444443 456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ .++.. ||++++|++|++++.|++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999996 56654 999999999999999987
Q ss_pred chHHH
Q 008676 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++..+
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
No 234
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-41 Score=324.60 Aligned_cols=186 Identities=48% Similarity=0.803 Sum_probs=161.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCC-CCc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTK-LSF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~-~~~ 127 (557)
.++++|+++.|...+ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.. | .+|+|.++|++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhh
Confidence 588999999984211 12569999999999999999999999999999999999863 4 3899999998753 223
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+.... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 5699999999999999999999875210 0 49999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEEEEc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (557)
||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999974357889999999998 9999865
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=369.18 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 48999999998 3457999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.++.++|++|++.+++.+||+||+.++............+.++++.++++.+||.+..++.+ .+||||||||++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHH
Confidence 13569999999999999999999998632111111223445567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999988899999999996 678899999999999999877654
No 236
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-41 Score=379.35 Aligned_cols=245 Identities=30% Similarity=0.426 Sum_probs=198.6
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++.... +..+ . ....-.++++|++++|+. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~----~~~~---------~-----~~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDT----GTRA---------I-----ERARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------C-----CCCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 467889999999986555321 0000 0 011225999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999987532 23579999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+..+. +++.+.++.+|+ ++..||.+|+ ..+.||||||||++|||+++++|++++||||||+||+.+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 335555666554 4567899987 457799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ ...+.||+|++|++|+++..|+.++..
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 579999999997 457889999999999999999988764
No 237
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7e-42 Score=411.74 Aligned_cols=255 Identities=23% Similarity=0.310 Sum_probs=200.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.+|..+. ...+..+. .. .......|+|+||++.|+.+ +++++|+|+||+|++
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~-~~~~~~~~-------~~----~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDV-RDNGGIRI-------KN----KNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCC-CCCccccc-------cc----CCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 578999999999987664321 00000000 00 00112359999999999532 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC---------------------------------------------------C
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~---------------------------------------------------~ 110 (557)
|+.+||+||||||||||+++|.|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------C
Q 008676 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------G 178 (557)
Q Consensus 111 ~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------g 178 (557)
+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.++.. ..+.++ +.+.++.. .
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATRED----VKRACKFAAIDEFIES 1343 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHh
Confidence 148999999998532 24679999999999976 99999998732 223333 33333333 3
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchH
Q 008676 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE 257 (557)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~ 257 (557)
|++.+||.||+ +...||||||||++|||||+++|+|||||||||+||+.++..|.+.|+++. .+++|+|+++|+++
T Consensus 1344 LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls-- 1420 (1466)
T PTZ00265 1344 LPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA-- 1420 (1466)
T ss_pred CccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--
Confidence 57788999996 667799999999999999999999999999999999999999999999986 36899999999963
Q ss_pred HHhcCCeEEEeeC----CeEE-EEcCcchHH
Q 008676 258 VFELFDRLYLLSG----GKTV-YFGETSAAF 283 (557)
Q Consensus 258 i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 283 (557)
..+.||+|++|++ |+++ +.|+.+++.
T Consensus 1421 ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1421 SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 4678999999999 9955 899988765
No 238
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-41 Score=386.75 Aligned_cols=246 Identities=27% Similarity=0.434 Sum_probs=197.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+++.|.+|+.++++.++..+. .+ .. .. ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~---~~-----------~~--~~-~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRS---AG-----------LA--AL-PELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccC---CC-----------CC--CC-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 467899999999986654321 00 00 00 011235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++.
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~--- 555 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN--- 555 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC---
Confidence 9999999999999999999999999986 9999999998542 23579999999999986 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+.+ .+.+.++..+ +++..||.+|+ ...+||||||||++|||||+++|++||||||||+||+.+
T Consensus 556 -~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 556 -P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred -C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 1 12222 2333444443 34567898887 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++. . .+.||+|++|++|++++.|+.+++.+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999984 5799999999973 4 46699999999999999999887653
No 239
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=335.02 Aligned_cols=222 Identities=22% Similarity=0.313 Sum_probs=182.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~--~~~~~~G~I~~~G~~~~~-- 125 (557)
+.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.. |..+.+|+|.+||.+...
T Consensus 2 ~~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 2 YRIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred cEEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 358899999988 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 008676 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (557)
..+.++|++|++.+++. |++||+.+..... ........++++.+.++.+++.+...... +..+..||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHH
Confidence 13569999999988885 9999998764322 11123334567888999998854321111 224567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999964 79999999996 6889999999999999999999887
Q ss_pred hH
Q 008676 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
+.
T Consensus 231 ~~ 232 (250)
T PRK14266 231 QI 232 (250)
T ss_pred HH
Confidence 65
No 240
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=357.90 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=195.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
.-++++|++++| +..++|+||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|++||++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358899999999 5688999999999999999999999999999999999999997 99999999975421
Q ss_pred ---cccEEEEccCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
...|+.|+|+..++|+|||.||+.++..... ..-+.++..++++.++|+.+|+....++.++ +||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 2458999999999999999999998865443 2335678888899999999999655788776 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|.|||||..+++++||||||++|+......+.+.+++|+++|.+||++||. .+|++++||||.+|++|+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999998883
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=337.21 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeCC
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G------~~~~ 124 (557)
.++++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++| ++..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 38999999998 4567999999999999999999999999999999999999875 66655555 4322
Q ss_pred C-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCC
Q 008676 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGI 195 (557)
Q Consensus 125 ~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~L 195 (557)
. .++.++|++|++.+++.+|++||+.+...... .....+.++++.++++.+++.+ ..+. .++.|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~L 154 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-----PASQL 154 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----CcccC
Confidence 1 13568999999999999999999998754321 1123445567889999999964 2333 45679
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.++||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 69999999995 67889999999999999999
Q ss_pred EcCcchHH
Q 008676 276 FGETSAAF 283 (557)
Q Consensus 276 ~G~~~~~~ 283 (557)
.|+.++..
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99887654
No 242
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-41 Score=340.38 Aligned_cols=218 Identities=26% Similarity=0.376 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--FG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--~~ 128 (557)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.... .+
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccc
Confidence 589999999883 2356999999999999999999999999999999999999886 99999999875321 23
Q ss_pred cEEEEccCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 129 TAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 129 ~~~yv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++|++|++.+. ...+++|++.++...... ........+++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 599999997652 234789998654210000 00112233456788899999988777755 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+++++ +|++++.|++++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999987899999999996 6788999999877 8999999987764
No 243
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=338.33 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|++++. ...+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 58999999988 3457999999999999999999999999999999999987531 1248999999986521
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
..+.++|++|++.+++. ||+||+.+..... ... .+..++++++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13469999999988885 9999998875432 111 123355667788888743211111 1245679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee---------CCe
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~ 272 (557)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999995 68999999999998 799
Q ss_pred EEEEcCcchHH
Q 008676 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999987764
No 244
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.7e-41 Score=337.50 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=169.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~--~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCC--CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 468899998732 11356999999999999999999999999999999999999886 9999999987431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (557)
.+.++|++|++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....+. .++.|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999988876 59999998753211 1111111 112222222 33222222 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 789999999996 4565 8999999999999999987
Q ss_pred chHHH
Q 008676 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++..+
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 66544
No 245
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-41 Score=377.12 Aligned_cols=244 Identities=26% Similarity=0.342 Sum_probs=196.2
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|++|+.++++.++.... +.. +. ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~~~---------~~-----~~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----GSE---------PV-----PEGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----CCC---------CC-----CCCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 467899999999986654321 000 00 011224899999998842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
|+.++|+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999997532 13579999999999986 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|+++||||||++||+.+
T Consensus 415 ---~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 122222 333444443 45667888887 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +|+|+|+++|++. ..+.+|++++|++|+++..|+.+++.
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999985 5899999999973 45679999999999999999987764
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.9e-41 Score=405.31 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=198.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.|+++||++.|.. +.+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999831 1367999999999999999999999999999999999999986 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.+||+||++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+..|+.++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2356999999999999999999999877654 23444556778899999999988887654 699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
|+||+.+|+++||||||+|||+.+++.+++.|++++++|+|||++||++ +++..+|||+++|++|+++..|++++++..
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999995 789999999999999999999999999876
Q ss_pred HH
Q 008676 286 FA 287 (557)
Q Consensus 286 f~ 287 (557)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
No 247
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.5e-41 Score=331.22 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.+... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999998731 1256999999999999999999999999999999999999886 8999999987421 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGer 200 (557)
++.++|++|++.+++ .||+||+.+.... .. .+.+.+.++.+++.+..++... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999764211 11 2345677888888765554321 113468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++ +.+ ++||++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999765 8999999996 444 799999999999998754
No 248
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=352.57 Aligned_cols=254 Identities=27% Similarity=0.385 Sum_probs=209.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|-+|+.++|.+.|...... .. .++...|..+++++.- .+.++.+|+|+||.+.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m------------------~L-P~P~g~L~Ve~l~~~P---Pg~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERM------------------PL-PAPQGALSVERLTAAP---PGQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCC------------------CC-CCCCceeeEeeeeecC---CCCCCcceecceeEecC
Confidence 36778899999998877755311 11 1344569999999843 33567899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||.|+|.|..+|. +|.|.+||.+.+.. -++|||+||+-.+|+. ||.|||.-...-.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999999886 99999999875421 3679999999999998 9999996332111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
.++.+-...+.+.+.+++ +.+.+.+||.||+ ....||||||||+++||||..||.+++||||-|+||......+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 111111222334556665 5688999999997 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHH
Q 008676 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (557)
Q Consensus 237 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (557)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++...
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999984 78999999999999999999999988754
No 249
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.8e-41 Score=331.50 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
+.++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6677888776 4577999999999999999999999999999999999999886 9999999986421
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
..+...+++.+||+||+.+..... .....+.++++.++++.++|.+..++.+ ++||||||||++|||+|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 111234557789999998875432 1233444566788999999988777755 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999995 6788899999999999998765
No 250
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.9e-41 Score=335.88 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=171.5
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCH
Q 008676 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 145 (557)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999743 89999999875321 2458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEE
Q 008676 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~-------~p~llll 218 (557)
+||+.+.... .....+..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886321 1123334567889999999987776644 5799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987899999999995 678899999999999999999987654
No 251
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9e-41 Score=324.84 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=170.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 6889999988 3457999999999999999999999999999999999999886 9999999987532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+....+. . ...++++++++.+||.+..++.+ +.||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHH
Confidence 569999999999999999999998754321 1 22356788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++..+.+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999996 5677777788776
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=342.06 Aligned_cols=227 Identities=29% Similarity=0.407 Sum_probs=182.5
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~ 125 (557)
....|+++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 42 ~~~~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 42 GDAKLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CCceEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 34468999999998 3467999999999999999999999999999999999998521 0248999999987531
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC---------CCCC-HHHHHHHHHHHHHHcCCCcccccccc
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIG 188 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg 188 (557)
.++.++|++|++.+++. ||+||+.+....... .... ....++.+.++++.+++.+......
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred ccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 12469999999988875 999999987532100 0011 1223466788999998854332222
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE-EE
Q 008676 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YL 267 (557)
Q Consensus 189 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v-~~ 267 (557)
+..+++||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEE
Confidence 225678999999999999999999999999999999999999999999999976 48999999996 6788999997 57
Q ss_pred eeCCeEEEEcCcchHH
Q 008676 268 LSGGKTVYFGETSAAF 283 (557)
Q Consensus 268 L~~G~iv~~G~~~~~~ 283 (557)
|++|++++.|++++..
T Consensus 273 l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVEYDDTDKIF 288 (305)
T ss_pred ecCCEEEEeCCHHHHH
Confidence 8999999999877653
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.1e-41 Score=327.23 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Ccc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (557)
.++++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 11 LLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSR 82 (214)
T ss_pred eEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhh
Confidence 58999999987 3456999999999999999999999999999999999999886 8999999987542 224
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+|++||+.+....+. . ...+.+.++++.++|.+..++.+ ..||||||||++|||+
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 151 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARL 151 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999999999999999988754321 1 12345678899999987777754 5699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ +++.+++|++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988899999999996 689999999999863
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.9e-40 Score=331.92 Aligned_cols=218 Identities=28% Similarity=0.355 Sum_probs=177.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+. +|. +|+|.++|.+...
T Consensus 2 i~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 7899999988 3457999999999999999999999999999999999995 464 8999999986421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhh-ccC--C-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL--P-DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++.+|+.+++.+... ... . ......+..+++++.++.+++.+ ..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 11359999999988888888777654321 110 0 00112233566788899999953 3444321 369999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEc
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (557)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 566666 8999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.+.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
No 255
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=332.83 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEcc---------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 008676 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G 114 (557)
+.++++||+++|+.. +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 568999999998752 123456999999999999999999999999999999999999886 89
Q ss_pred EEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008676 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (557)
Q Consensus 115 ~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (557)
+|.++|+ +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..++.+ +.
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 356778877788899999998764432 2234444556778888889987776644 57
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|.+++++|+|||++||++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999995 6788999999999999999
Q ss_pred EEcCcchHHH
Q 008676 275 YFGETSAAFE 284 (557)
Q Consensus 275 ~~G~~~~~~~ 284 (557)
+.|+.++..+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877654
No 256
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.9e-41 Score=374.57 Aligned_cols=246 Identities=25% Similarity=0.337 Sum_probs=193.4
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.++.+|+.++++.++.... . . +.. .. ......++++|+++.|+ +++.+|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~-~---~----------~~~-~~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREE-P---A----------DAP-EL-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccC-C---c----------cCC-CC-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 467889999999976544221 0 0 000 00 01122599999999984 224689999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999987532 23579999999999875 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+.++.. +.++.. .+.+..|+.+|+ ....||||||||++|||||+++|++|+|||||++||+.+
T Consensus 435 ---~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 ---GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred ---CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 12233222 222222 234456788876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..+.+.|+++. +++|+|++||++ +.+ +.||+|++|++|++++.|+.++..+
T Consensus 507 ~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 507 EARVKNAIDALR-KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999884 589999999997 444 6799999999999999999876643
No 257
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=333.68 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+. ..+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 478999999883 1246999999999999999999999999999999999999886 8999999986431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++. |++||+.+.... ... ..+.+.++.+++.+..+ +..+ ..++.||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13469999999988876 999999875321 111 12333344444432221 1222 245689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++||++|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ .++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 589999999996 455 4599999999999999888
Q ss_pred cchHH
Q 008676 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
.++..
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76543
No 258
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-41 Score=376.09 Aligned_cols=221 Identities=26% Similarity=0.332 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~------ 124 (557)
.|+++|+++.|.... +.+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 599999999984211 1356999999999999999999999999999999999999886 899999986320
Q ss_pred -------------CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 008676 125 -------------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (557)
Q Consensus 125 -------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 186 (557)
...+.+|||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||.+ ..+.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0113699999997 68888999999999865421 2345555678899999999964 3444
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeE
Q 008676 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 265 (557)
++.+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++++++ |+|||++||++ ..+.++||||
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999999864 89999999995 6788999999
Q ss_pred EEeeCCeEEEEcCcchHH
Q 008676 266 YLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~ 283 (557)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999887653
No 259
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.5e-41 Score=375.50 Aligned_cols=248 Identities=29% Similarity=0.411 Sum_probs=196.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++..+... . .. ....+....++++|+++.|+.+ .++.+|+|+|++++|
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~----~---------~~--~~~~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPA----H---------PK--TLPVPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCC----C---------Cc--cCCcCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 46788999999998654422100 0 00 0000112359999999998431 125799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++|+||++.+|+. |++|||.++.
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~--- 438 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR--- 438 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999986 8999999987532 13579999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
+ ..+. +.+.+.++..++ ++..|+.+|+ ....||||||||++||||++++|++|+||||||+||+.+
T Consensus 439 -~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 439 -P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred -C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1 1122 234555565554 3456788876 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+..+.+.|+++. +++|+|++||++ +..+.+|++++|++|+++..|+.++..
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 579999999996 346789999999999999999977653
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.3e-41 Score=368.86 Aligned_cols=217 Identities=25% Similarity=0.301 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G--------- 120 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999988 3467999999999999999999999999999999999996 565 89999972
Q ss_pred --------------EeC--------C-------CCcccEEEEccC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 008676 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (557)
Q Consensus 121 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v 170 (557)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 22344556778
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 008676 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (557)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~ 249 (557)
.++++.+||++..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999987776644 57999999999999999999999999999999999999999999999966 5899999
Q ss_pred EeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHH
Q 008676 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (557)
Q Consensus 250 ~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (557)
+||++ ..+.++||++++|++|++++.|++++..+.
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 678889999999999999999998877654
No 261
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.4e-41 Score=324.37 Aligned_cols=194 Identities=28% Similarity=0.366 Sum_probs=169.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999988 3467999999999999999999999999999999999999886 9999999987432 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+.+.... . ..++++++++.+++.+..++.+ +.||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD----H-----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhccc----c-----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHH
Confidence 5699999999998899999999875321 0 2355788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+|+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ .+....+|+++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999987899999999997 4678899999887
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=334.44 Aligned_cols=221 Identities=24% Similarity=0.316 Sum_probs=180.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK--- 124 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~--~~~G~I~~~G~~~~--- 124 (557)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYY-----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEE-----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 358999999998 34579999999999999999999999999999999999987521 14899999997532
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
...+.++|++|++.+++. |++||+.+..... ... ....++++.+.++.+++.+...... +..+..|||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 164 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSG 164 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCH
Confidence 113468999999999886 9999998875422 111 2223456777888887742111111 124467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 68999999995 6788999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+.++.
T Consensus 243 ~~~~~ 247 (265)
T PRK14252 243 ATDTI 247 (265)
T ss_pred CHHHH
Confidence 87665
No 263
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.3e-41 Score=329.66 Aligned_cols=207 Identities=24% Similarity=0.388 Sum_probs=172.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999988 3467999999999999999999999999999999999998886 9999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++. |++||+.+....+. .. ...++++++++.+++. ...++. ++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHH
Confidence 12468999999988875 99999988644321 11 1234577899999995 355554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEEEcC
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~ 278 (557)
|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ +++ ..||++++|+ ++..+.+|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999976 489999999996 456 4699999995 555555553
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-41 Score=316.48 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46889999882 346999999999999999999999999999999999999886 9999999987532 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|++||+. ||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999973 8999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.+++|++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987789999999996 578889999999999864
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-40 Score=367.01 Aligned_cols=221 Identities=23% Similarity=0.343 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC--
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK-- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~-G~~---~~-- 124 (557)
.|+++|+++.|...+++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 59999999988421112356999999999999999999999999999999999999886 8999996 532 11
Q ss_pred ------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCcccC
Q 008676 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHLR 193 (557)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~ 193 (557)
..++.++|++|++.+++.+||+||+.+...+. .+.++.++++.++++.+||.+ ..++ .+.
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 426 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YPD 426 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Chh
Confidence 11245999999998999999999998764321 123334467889999999975 3455 446
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999764 89999999996 67889999999999999
Q ss_pred EEEEcCcchHHH
Q 008676 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
+++.|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999998876543
No 266
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=319.14 Aligned_cols=218 Identities=26% Similarity=0.420 Sum_probs=194.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|++++| +++.+|+++|+++++|.+++|+|||||||||||.+++++++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6788999998 6788999999999999999999999999999999999999886 99999999985422
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++.+-|+..+...+||+|-+.|+..- ...+....+.+..+++.++.++|++..|+++ .+||||||||..||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 25578899999998999999999998422 2223345566788999999999999998865 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+.++.+.+.++||||.++||-..+.++++.|++++++ |+||+++.||. ..+..++|+|+-|++|+++.+|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999874 99999999995 67889999999999999999999998763
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-40 Score=367.80 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 008676 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~ 124 (557)
.|+++|+++.|..+.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++ + +|+|+++|++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999999842110 13579999999999999999999999999999999999984 4 899999998642
Q ss_pred C--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 008676 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (557)
Q Consensus 125 ~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 193 (557)
. .++.++|++|++ .+++.+||+||+.++...+.. .....+.++++.++++.+||. +..++. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124589999996 478889999999987543211 123344456788999999997 356664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999874 89999999995 67889999999999999
Q ss_pred EEEEcCcchHH
Q 008676 273 TVYFGETSAAF 283 (557)
Q Consensus 273 iv~~G~~~~~~ 283 (557)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887663
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.4e-40 Score=365.93 Aligned_cols=224 Identities=28% Similarity=0.346 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~~--- 125 (557)
.++++|+++.|... +..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. .+.+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 48999999998421 11357999999999999999999999999999999999999762 1138999999987421
Q ss_pred ------CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 008676 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (557)
Q Consensus 126 ------~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~ 194 (557)
..+.++|++|++. +++.+|++|++.+...... ..+..+..++++++++.+||.+. .++. +.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY-----PHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC-----Ccc
Confidence 1146999999974 6777899999886543211 23344556778999999999752 3554 457
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||||++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999775 89999999996 678899999999999999
Q ss_pred EEEcCcchHH
Q 008676 274 VYFGETSAAF 283 (557)
Q Consensus 274 v~~G~~~~~~ 283 (557)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999887653
No 269
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.1e-41 Score=373.13 Aligned_cols=220 Identities=31% Similarity=0.413 Sum_probs=174.8
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.++...... .+ ... .. ......++++|+++.|+ +++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~--------~~~-~~-~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPEGV----VP--------AAG-AL-GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCC----CC--------CCc-cc-CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 46789999999998665432100 00 000 00 01123599999999984 224599999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CcccEEEEccCCCCCCCCCHHHHHHHHhhccC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||||++.+|+. |++|||.++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC---
Confidence 9999999999999999999999999996 9999999987542 23579999999999988 99999998621
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 008676 158 PDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (557)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 230 (557)
..++ +++.+.++..++ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++
T Consensus 434 --~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 434 --DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1222 234455555444 5678999997 5567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 008676 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 231 ~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999864 579999999984
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.1e-40 Score=321.37 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~--~~~~~~~G~I~~~G~~~~~---- 125 (557)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|.. +|+ +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999883 457999999999999999999999999999999999994 554 8999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.+..++|++|++.+++.+|+++++. . ..+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1234999999999898888887760 0 1135999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-cCCeEEEeeCCeEEEEcCcchH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +.+.+ ++|++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 999999999999999999999999999999999999987789999999996 46666 7999999999999999944 45
Q ss_pred HHHH
Q 008676 283 FEFF 286 (557)
Q Consensus 283 ~~~f 286 (557)
.+.+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4444
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-41 Score=332.64 Aligned_cols=211 Identities=32% Similarity=0.422 Sum_probs=168.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46889999873 1356999999999999999999999999999999999999886 9999999987431 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGe 199 (557)
++.++|++|++.+++ .||+||+.+.... ....+ +.+.++..++.+ ..++.+. ..++.|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHH
Confidence 246999999998886 5999999875321 11111 222233333321 1222222 2456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
|||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +.+. .||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999996 4564 5999999999999998887
Q ss_pred chHH
Q 008676 280 SAAF 283 (557)
Q Consensus 280 ~~~~ 283 (557)
++..
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6543
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.7e-40 Score=331.59 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 48999999998 3457999999999999999999999999999999999999886 999999873 359
Q ss_pred EEEccCCCCCCCC--CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTL--TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 131 ~yv~Q~~~l~~~l--TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
+|++|++.+++.+ |+++++.+.. ... .+++.++++.+||.+..++.+ ..||||||||++||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 9999998877753 7888765321 111 234678899999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.||++++|++ +++..|++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999775 89999999996 678899999999965 78899987765
No 273
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-41 Score=301.39 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=190.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
+.|+++|+++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+.-|. +|+..+.|...+.
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCc
Confidence 357889999988 5678999999999999999999999999999999998877775 9999998864211
Q ss_pred -------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
.++.+|+|+|+-.++|.+||.|||.-+. ++. .++++++.+.+..++|+++.|.+.+|. .+-.||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsgg 145 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGG 145 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccc
Confidence 1356999999999999999999997653 221 256788888999999999999999887 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||.. +.+.+.+.+|+.|++|++++.|+
T Consensus 146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecc
Confidence 99999999999999999999999999999999999999999999999999999995 67889999999999999999998
Q ss_pred cc
Q 008676 279 TS 280 (557)
Q Consensus 279 ~~ 280 (557)
.+
T Consensus 225 a~ 226 (242)
T COG4161 225 AS 226 (242)
T ss_pred hh
Confidence 65
No 274
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.6e-40 Score=324.27 Aligned_cols=206 Identities=29% Similarity=0.371 Sum_probs=170.8
Q ss_pred EEEEeEEEEEEccC-cc-cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 008676 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTKL 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~--G~--~~~~ 125 (557)
++++|+++.|.... ++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 78899999984211 11 246999999999999999999999999999999999999886 8999998 42 3210
Q ss_pred ---------CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 008676 126 ---------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (557)
Q Consensus 126 ---------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~L 195 (557)
..+.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+|+.+. .+.. +.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccC
Confidence 1245899999999999999999998864322 22333445678889999999763 3443 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987899999999994 66778999998764
No 275
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-40 Score=335.96 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.|+++|+++.+.. +.+.+|+|+|++|++||+++|+|+||||||||+++|+|+++ . +|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 4889999999842 23569999999999999999999999999999999999986 3 7999999987532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
.++.++|+||++.+|+. |++||+..... ... +.+.+.++.+||.+..+ +.+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13569999999999986 99999964211 112 34566778888865443 34433 34569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||||++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999874 589999999996 5555 599999999999999999
Q ss_pred cchHHH
Q 008676 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 988754
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=364.25 Aligned_cols=221 Identities=21% Similarity=0.349 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~-~~~~~~G~I~~~G~~~~~~--- 126 (557)
.|+++|+++.|.. ++++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|++....
T Consensus 259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 5899999987731 113569999999999999999999999999999999999987 45 89999999875311
Q ss_pred ---cccEEEEccCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
.+.++|++|++ .+++.+||.||+.+........ .....+.+++++++++.+++. +..++.+ +.|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 24589999995 4788899999998763211110 012334456788999999996 4667654 56999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87764
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-40 Score=321.09 Aligned_cols=197 Identities=28% Similarity=0.364 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--Ccc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (557)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 58999999998 3457999999999999999999999999999999999999886 8999999986432 235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++|++.+++.+||+||+.+...... .. .+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHH
Confidence 68999999888888999999987654321 11 234788999999987666644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.. |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999987899999999996 45554 88887754
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.6e-40 Score=319.12 Aligned_cols=193 Identities=27% Similarity=0.349 Sum_probs=165.0
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999988 3467999999999999999999999999999999999999886 9999999987432 12
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++.+|+.||+.+...... . + ++.+.++++.+++.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999988888999999988654321 1 1 245778999999987777654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 267 (557)
+++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .-.+++++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEee
Confidence 999999999999999999999999999999999878999999999974 234577654
No 279
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-40 Score=314.82 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRY-----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEE-----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 4689999988 3456999999999999999999999999999999999999886 9999999986432
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135699999999999889999987532 8999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+++|++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999886 89999999995 67888999999999885
No 280
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-40 Score=324.49 Aligned_cols=207 Identities=25% Similarity=0.369 Sum_probs=169.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+||++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999998842 2357999999999999999999999999999999999999886 8999999987431
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (557)
..+.++|++|++.+++ .||+||+.+... ... +.+.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 1356999999998876 599999964311 111 23455566666654322 2222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999996 4565 499999999999998875
No 281
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-40 Score=362.64 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999753 23899999999999999999999999999999999999886 8999999987532
Q ss_pred -CcccEEEEccC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008676 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (557)
Q Consensus 126 -~~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 194 (557)
.++.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+||. +..++.+ +.
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46889999999998753211 000 0 11223345678999999996 6677755 46
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999996 6889999999999999999
Q ss_pred EEcCc
Q 008676 275 YFGET 279 (557)
Q Consensus 275 ~~G~~ 279 (557)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 282
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.5e-40 Score=313.23 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899998865 899999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 134699999984 57888999999976421 8999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987789999999995 688999999999999974
No 283
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.7e-40 Score=327.81 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=168.4
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.++++|+++.+..+ .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence 358999999998421 1246999999999999999999999999999999999999886 8999999986421
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
..+.++|++|++.+++ .||+||+.+..................+.++++.+ |+++..+. .++.||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qr 158 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQR 158 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHH
Confidence 1356999999998886 59999998753211000000011112356778887 67665555 346799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 203 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
++||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++. .||++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999865 68999999996 4664 5999999999874
No 284
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=348.87 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++||++.+.. +..+.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~--~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD--GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCC--CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 5889999887732 12356999999999999999999999999999999999999886 99999999752
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
++.+...+.+.+|++||+.+..... ..+..+..+++.++++.++|.+..++.+ +.||||||||++|||||+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 2233445667789999998754322 2234445566788999999988777654 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987899999999996 67889999999999999999999888764
No 285
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-41 Score=326.32 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=173.0
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCcccEEEEccCCCCCCCCC
Q 008676 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 144 (557)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||+.. ...++++||||||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776899999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 224 (557)
|+.||.|+.... .....+++.+.+|++|..+. +|..|||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985321 23457888999999999987 5667999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||-..+.+++-+|++++++ +..|+.+||.+ .|+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999875 88999999995 79999999999999999999999988764
No 286
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-40 Score=397.07 Aligned_cols=249 Identities=18% Similarity=0.232 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.++++.+++..... .+.. +... -+....|+|+|++++|+. +.+.+|+|+|++|++
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~-~~~~----------~~~~--~p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAII-ENNR----------PVSG--WPSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccc-cCCC----------CCCC--CCCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 45788899999998766533210 0000 0000 011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|+. |+||||.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997542
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.+.++..++ ++..||.+|+ .+.+||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1335 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 12222 34455555544 4567899986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|+|+++|++ +. ...||+|++|++|++++.|+++++.+
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl-~t-i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRL-NT-IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 579999999996 34 45699999999999999999988753
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.7e-40 Score=359.73 Aligned_cols=208 Identities=24% Similarity=0.255 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-S--- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~--- 126 (557)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 48999999998 3456999999999999999999999999999999999999886 8999999875421 1
Q ss_pred -cccEEEEccCCCC--C------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 127 -FGTAAYVTQDDNL--I------GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 -~~~~~yv~Q~~~l--~------~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..++.+ .+|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 2458999998643 1 146888887532 122456888999999988777755 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 218 ~~~~~~ 223 (490)
T PRK10938 218 EREEIL 223 (490)
T ss_pred CHHHHh
Confidence 887653
No 288
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-39 Score=316.27 Aligned_cols=192 Identities=22% Similarity=0.277 Sum_probs=164.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|++... ..
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 7899999988 3467999999999999999999999999999999999999886 9999999986532 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999998888899999998864211 11 245788999999987666644 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
+++.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ..+.+|...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999999778999999999963 345677544
No 289
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-39 Score=396.07 Aligned_cols=249 Identities=21% Similarity=0.253 Sum_probs=199.0
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++.+|.+|+.++++.+++..... .+..| ... -+....|+|+|++++|.. +.+.+|+|+|++|+|
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~-~~~~~----------~~~--wp~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVI-ENNRP----------PPG--WPSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccc-cCCCC----------CCC--CCCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 45788999999997665532210 00000 000 011235999999999942 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|+. |+||||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.++++..++ ++..||.+|+ .+.+||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 12222 24444554443 4578999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|+|+++|+++ . ...||||++|++|+++++|+++++.+
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~-t-I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN-T-IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH-H-HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999874 5799999999964 4 45699999999999999999998764
No 290
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9.8e-40 Score=340.43 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++.| ++..+++|||+++++||++||+|+||||||||+|+|.|.+.|+ +|+|.+||++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 58999999999 4688999999999999999999999999999999999999997 99999999975421
Q ss_pred --cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
+..||+|.|++.+++++||.||+..+..-........++.+++++++.+..||+-..|.+|+ .||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24589999999999999999999998653322245677788899999999999888888776 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.. .|+.++|||+.+|++|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999994 79999999999999999986655
No 291
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.3e-40 Score=364.02 Aligned_cols=229 Identities=30% Similarity=0.420 Sum_probs=182.6
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..+.+|+.++++.++.... . . ... ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~---~--~---------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG---K--A---------PVT----AAPAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC---C--c---------CCC----CCCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 467899999999974432110 0 0 000 001125999999999842 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999997542 23579999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..++ +.+.+.++..++ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234455555554 4457899987 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+..+.+.|+++. +++|+|+++|++ + ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~-~-~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRL-A-LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence 999999999885 589999999996 3 35789999875
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.5e-40 Score=314.01 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=150.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CcccEEEEccCCC--
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-------~~~~~~yv~Q~~~-- 138 (557)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 456999999999999999999999999999999999999886 9999999987531 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 008676 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 218 (557)
++ ..||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 469999999865432 2233444567889999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
||||+|||+.++..+.+.|++++++|+|||++||++
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 999999999999999999999987899999999996
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-39 Score=309.15 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468899998731 1246999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999986 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|+|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ +.+ +.||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987899999999996 455 68999999999974
No 294
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-41 Score=344.44 Aligned_cols=246 Identities=26% Similarity=0.374 Sum_probs=199.3
Q ss_pred hHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEE
Q 008676 6 ASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLT 85 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 85 (557)
-.+|+++++.++|+.-+. +|-.| -......++|+|+++.|. .++.+|+||||++.||+.+
T Consensus 508 DmEnmfdllkee~eVvd~--P~a~p--------------l~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDL--PGAPP--------------LKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHhhcCchhhcC--CCCCC--------------ccccCCeEEEEEeEEecC----CCCceeecceEEecCCcEE
Confidence 367899999888875431 11111 112345699999999995 5688999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008676 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 86 ~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
|++||||+||||+|++|..+.+.+ +|+|.+||++++. .++.||.||||..+|.+ |+..|++|+..-
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~----- 638 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPS----- 638 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCC-----
Confidence 999999999999999999998875 9999999998642 24679999999999987 999999987322
Q ss_pred CCHHHHHHHH--HHH-HHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008676 161 MPWSEKRTLV--ERT-IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (557)
Q Consensus 161 ~~~~~~~~~v--~~~-l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L 237 (557)
.+.++..+.+ ..+ =+.++..+.++|.||++. -.|||||||||+|||+++++|.+++|||.||+||..+.+.|...|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG-LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG-LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc-cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 2233322211 111 123688999999999844 459999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 238 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.+++. |+|.|++.|..+. .-.+|.|+++++|+|++.|.-+|+..
T Consensus 718 ~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 99975 6899999999753 34699999999999999998877653
No 295
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-39 Score=321.55 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=164.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCC--CCCCHHHHHHHHhh
Q 008676 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~~~ 154 (557)
|++++||+++|+|+||||||||+++|+|+++|+ +|+|.+||++.....+.++|++|++.++ ..+|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468899999999999999999999999999886 9999999987543345799999998763 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008676 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 155 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
.... ........++++.++++.+++.+..++.+ .+||||||||++|||+|+.+|+++|+||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00112233456888999999987776654 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 234 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+.|++++++|+|+|++||++ +++.++||+++++ +|++++.|+.++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999987899999999996 5788999999999 89999999877653
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-39 Score=326.73 Aligned_cols=213 Identities=22% Similarity=0.289 Sum_probs=169.8
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
-.++++|+++.+.. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHH
Confidence 35999999999831 1256999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSg 197 (557)
..+.++|++|++.+++. |++||+.... .... ..+.+.++..++.+ ..++.++. .++.|||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~ 159 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSV 159 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCH
Confidence 13569999999988875 9999985321 0111 11223333333322 12233322 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++ +++.. ||++++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 489999999997 45554 9999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
++++..
T Consensus 237 ~~~~~~ 242 (257)
T cd03288 237 TPENLL 242 (257)
T ss_pred CHHHHH
Confidence 887654
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-39 Score=357.40 Aligned_cols=221 Identities=22% Similarity=0.344 Sum_probs=183.3
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~-~~~~~G~I~~~G~~~~~--- 125 (557)
..|+++|+++.+.. ++++.+|+|+||++++||+++|+||||||||||||+|+|+++| . +|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCH
Confidence 35899999987621 1134699999999999999999999999999999999999975 4 8999999987531
Q ss_pred ---CcccEEEEccCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008676 126 ---SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ---~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (557)
.++.++|++|+. .+++.+||+||+.+....... ........+++++++++.+++.+ ..++.+ +.||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCC
Confidence 124689999995 588999999999875321110 01123334567889999999964 456654 4699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ +++.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999996 688999999999999999987
Q ss_pred cCcch
Q 008676 277 GETSA 281 (557)
Q Consensus 277 G~~~~ 281 (557)
++.++
T Consensus 485 ~~~~~ 489 (500)
T TIGR02633 485 FVNHA 489 (500)
T ss_pred Ecccc
Confidence 76543
No 298
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.2e-39 Score=310.29 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----Cc
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----~~ 127 (557)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899998832 1236999999999999999999999999999999999999886 9999999986421 13
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56999999998876 5999987 2359999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+++.+|++++|||||+|||+.++..+++.|++++ ++.|||++||++ .++ ..+|++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 589999999996 455 469999999999998754
No 299
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-39 Score=314.90 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4889999998831 1246999999999999999999999999999999999999886 9999999987421
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
.++.++|++|++.+++. |++||+.+.. .... +.+.+.++ + +. .+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999996531 1111 12333333 2 22 456799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||+|+.+|+++||||||+|||+.++..+.+.|+++. +|+|+|++||++ .++.. +|++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 589999999996 45554 999999999999988763
No 300
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=355.54 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++ .+|+|+||++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 578888863 2699999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++.++||+|++ .+++.+||.||+.+....... ......+.+++++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 24599999995 578889999999875321100 0122334456788999999995 5667654 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=356.55 Aligned_cols=214 Identities=21% Similarity=0.314 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888862 24899999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 008676 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (557)
++.++|++|++ .+++.+|+.||+.+...... ... ......++.+.++++.+++. +..++.+ ..|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCH
Confidence 24689999996 48889999999987532110 000 11223345678899999994 5677755 46999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999995 7899999999999999999999
Q ss_pred CcchH
Q 008676 278 ETSAA 282 (557)
Q Consensus 278 ~~~~~ 282 (557)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 88764
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-39 Score=325.77 Aligned_cols=228 Identities=32% Similarity=0.433 Sum_probs=200.4
Q ss_pred CcceEEEEEeEEEEEEccCc------ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 008676 47 DVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (557)
Q Consensus 47 ~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G 120 (557)
..+.-++.+|+++.|+.+++ ....++++||+++++||.++|+|+||||||||=.+|.+++++ +|+|.++|
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G 347 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDG 347 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECC
Confidence 35667999999999986532 224689999999999999999999999999999999999887 69999999
Q ss_pred EeCCC--------CcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 008676 121 HKTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (557)
Q Consensus 121 ~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (557)
+++.. .++++-.|+||| .+.|.|||.|-+.-+.....+ ..+..++.+++.+.|+++||+.... +.
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~R 422 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR----NR 422 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh----hc
Confidence 97531 135688999997 589999999999988776544 4678899999999999999976322 34
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+|++.|||||||++||||++.+|++++||||||+||..-+.+|+++|++|.+ .|.+-++++||. .-+..+||+|+||+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~ 501 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMR 501 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEe
Confidence 7899999999999999999999999999999999999999999999999976 589999999995 78999999999999
Q ss_pred CCeEEEEcCcchHHH
Q 008676 270 GGKTVYFGETSAAFE 284 (557)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (557)
+|+||++|+++++.+
T Consensus 502 ~GkiVE~G~~~~if~ 516 (534)
T COG4172 502 DGKIVEQGPTEAVFA 516 (534)
T ss_pred CCEEeeeCCHHHHhc
Confidence 999999999988754
No 303
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-39 Score=393.09 Aligned_cols=249 Identities=19% Similarity=0.239 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+|+.++++.+++... ...+. .++... +....|+|+|++++|+. +...+|+|||++|+|
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~-~~~~~----------~~~~~w--p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPW-QIQET----------APPSGW--PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccc-cccCC----------CCCCCC--CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 467899999999976664321 00000 000000 11235999999999952 224699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+++++||||++.+|++ |+||||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999986 8999999998643 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 229 (557)
..+++ .+.+.++..++ ++.+|+.+|+ .+..||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1385 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 12232 24455555554 3567999986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
...|.+.|++.. +++|||+++|++. ....+|||++|++|+++++|+++++.+
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 5799999999963 356699999999999999999988764
No 304
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-39 Score=314.55 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=155.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++||++.+..+....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++| +++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999988321000136999999999999999999999999999999999999886 99999998 589
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHH
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
|++|++.+++ .|++||+.+.... ... ...+.++.+++.+ ..++.+.. .+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHH
Confidence 9999998885 5999999875321 111 1222333333321 12223322 45789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||++||++ ..+.. +|++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4677766789999999996 45665 99999999985
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-39 Score=304.22 Aligned_cols=231 Identities=27% Similarity=0.392 Sum_probs=198.8
Q ss_pred eEEEEEeEEEEEEccCccc-ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008676 50 ARLTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
+.|+++||++++. + +.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCH
Confidence 3689999999993 4 5899999999999999999999999999999999998533 3469999999998532
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (557)
.+..+...+|.|.=+|..|+.+.|..+...+........+....+++.++.+++++ .+++.+. -++||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHH
Confidence 13457789999999999999999998866533221113456677889999999987 5677665 379999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC--CeEEEeeCCeEEEEcCc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGET 279 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~ 279 (557)
|..|+..++.+|++.+||||-||||..+-+.+.+.++.++..|.+++++||. ..+.++. |++.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy--~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY--QRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH--HHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999998 4678887 99999999999999999
Q ss_pred chHHHHHHhCCCCC
Q 008676 280 SAAFEFFAQAGFPC 293 (557)
Q Consensus 280 ~~~~~~f~~~g~~~ 293 (557)
++...++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888865
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.7e-39 Score=354.81 Aligned_cols=232 Identities=22% Similarity=0.221 Sum_probs=183.3
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.+..|.+|+.+++..++..+. . +... . .....++++|+++.|+ +++.+|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~-------------~~~~--~--~~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P-------------RPQA--F--PDWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c-------------cccc--c--CcCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 467889999998754332110 0 0000 0 0112599999999994 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||.++|+||||||||||+++|+|+++|+ +|+|.+||.+... .+++++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999986 9999999998542 23679999999999886 88887 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
+ . ..++.+.+.++.+++.+..+. ++. ....||||||||++||||++++|++|+||||||+||+.++..+.
T Consensus 418 -~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1 123456788888888754332 221 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 235 ~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
+.|.+..+ .|+|+|+++|++ +..+.||++++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99986644 589999999996 35778999999999999866
No 307
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.2e-39 Score=333.27 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.2
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 008676 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (557)
Q Consensus 87 ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (557)
|+|||||||||||++|+|+++|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999886 9999999987532 2356999999999999999999999986532 2234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008676 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
.+.+++++++++.++|.+..++. +++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 45566789999999998877764 4579999999999999999999999999999999999999999999999764
Q ss_pred -CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 244 -g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|+|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999995 6889999999999999999999988764
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.7e-39 Score=308.39 Aligned_cols=174 Identities=38% Similarity=0.561 Sum_probs=149.8
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----c
Q 008676 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~ 127 (557)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 4688998882 356999999999999999999999999999999999999886 99999999875321 1
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+.++|++| +++.+|+.+..++. ++.||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 23566666 55667776655553 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999776 89999999996 5778999999999999998654
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.9e-38 Score=352.63 Aligned_cols=218 Identities=27% Similarity=0.356 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||++...
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 58999999998421 11356999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 008676 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (557)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. +.|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1246999999999999999999999865332 2234555677899999999988777754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ +.+ +.|||+++|++|++++.|++++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHH-HhCCEEEEEECCEEEeecCccc
Confidence 99999999999999999999999999999999999999987899999999996 344 6799999999999999998875
Q ss_pred H
Q 008676 282 A 282 (557)
Q Consensus 282 ~ 282 (557)
.
T Consensus 230 ~ 230 (648)
T PRK10535 230 K 230 (648)
T ss_pred c
Confidence 4
No 310
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.2e-39 Score=386.29 Aligned_cols=244 Identities=26% Similarity=0.399 Sum_probs=190.1
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
.|.+|++|+.++++.+|..+. ...+. .... . ..|+++||++.|+.+ +++.+|+|+||++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~~~--------------~~~~-~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDDGK--------------KLKD-I-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCCCc--------------cCCC-C-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 578999999999988776432 10000 0111 1 159999999998521 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~-G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
||++||+||||||||||+++|+|+++|+ +|+|++| |.++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999996 9999995 565421 23569999999999986 999999986311
Q ss_pred cC----------CC------------C---------------------C-----CHHHHHHHHHHHHHHcCC-------C
Q 008676 156 RL----------PD------------K---------------------M-----PWSEKRTLVERTIIEMGL-------Q 180 (557)
Q Consensus 156 ~~----------~~------------~---------------------~-----~~~~~~~~v~~~l~~lgL-------~ 180 (557)
.. +. . . ......+.+.++++.+++ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112345666666654 4
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHH
Q 008676 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (557)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~ 259 (557)
+.+||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i- 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI- 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-
Confidence 567888886 5778999999999999999999999999999999999999999999999976 5899999999974 44
Q ss_pred hcCCeEEEeeCC
Q 008676 260 ELFDRLYLLSGG 271 (557)
Q Consensus 260 ~~~D~v~~L~~G 271 (557)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
No 311
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8e-39 Score=352.07 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~---- 126 (557)
.++++|++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588888872 1599999999999999999999999999999999999886 89999999875321
Q ss_pred --cccEEEEccCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHH
Q 008676 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (557)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 200 (557)
++.++|+||++ .+++.+|+.||+.................++.++++++.+||. +..++.+ +.||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 4788899999986431110010011223345688999999997 6667654 56999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 201 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6899999999999999999988776
Q ss_pred hH
Q 008676 281 AA 282 (557)
Q Consensus 281 ~~ 282 (557)
++
T Consensus 489 ~~ 490 (510)
T PRK15439 489 AI 490 (510)
T ss_pred cC
Confidence 54
No 312
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2e-38 Score=384.52 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=182.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+|+|++++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999942 2345999999999999999999999999999999999999986 8999999998642
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSg 197 (557)
.++.++||||++.+|+. |++|||.... ..+. +.+.+.++..++ ++.+|+.+|+ ...+|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999987 9999996421 1222 335566666665 3567899987 5678999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|++ +....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999999864 479999999996 34677999999999999999
Q ss_pred cCcchHHH
Q 008676 277 GETSAAFE 284 (557)
Q Consensus 277 G~~~~~~~ 284 (557)
|+++++..
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99988753
No 313
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.7e-38 Score=351.22 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=169.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.|+.++...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999999532111246999999999999999999999999999999999999986 9999999998643
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCcccCCCCHHHHHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRV 203 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-g~~~~~~LSgGerqRv 203 (557)
.++.++||+|++.+|.. |+++|+. + ...++.+.+.++.+++.+..+..- |......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999876 8888841 1 112345677888888865433211 1112357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
+||||++.+|++++|||||++||+.++..+.+.+. .++.+|+|+|+++|++. ..+.||+|++|++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 46567899999999963 5678999999999999754
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3e-38 Score=296.51 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.8
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------ 125 (557)
++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999983 457999999999999999999999999999999999999886 9999999986432
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1234777776 89999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ +++.+.+|++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999995 57888999999999999875
No 315
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.5e-38 Score=318.00 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 445899999984 246999999999999999999999999999999999999886 89999987
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerq 201 (557)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875221 11 11223333334332 12333332 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 202 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
|++|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 579999999996 455 579999999999999999987
Q ss_pred hHH
Q 008676 281 AAF 283 (557)
Q Consensus 281 ~~~ 283 (557)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 664
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=299.79 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.4
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~ 126 (557)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998731 1136999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+.++|++|++.+++ .|++||+ ||||||||++||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 246999999998776 5998886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||++ +++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999864 79999999996 56666 99999999885
No 317
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.1e-38 Score=310.04 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=158.1
Q ss_pred EEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 008676 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (557)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------- 125 (557)
.+.|+.+.+. +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4567777763 2357999999999999999999999999999999999999886 8999999976421
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 196 (557)
.++.++|++|++.++ ..|++||+.+.... .. ....+.++.+++.+.. ++..+. .+..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCC
Confidence 124689999999887 46999999875311 11 1233455555654322 222222 467899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||||||++|||+|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|+|++||++ +.+ ..+|++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 6777766789999999997 455 5799999999884
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-38 Score=297.35 Aligned_cols=164 Identities=33% Similarity=0.483 Sum_probs=144.3
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999873 2356999999999999999999999999999999999999886 999999874 5699
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++|++.++ ..|++||+.+. .++.||||||||++|||+|+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998642 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ . ....+|++++|++|.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999886 58999999996 3 457999999998653
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=348.11 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999998 3467999999999999999999999999999999999999886 899999873 3589
Q ss_pred EEccCCCCCCCCCHHHHHHHHhh-cc-----------CCCC-----------------CCHHHHHHHHHHHHHHcCCCcc
Q 008676 132 YVTQDDNLIGTLTVRETISYSAR-LR-----------LPDK-----------------MPWSEKRTLVERTIIEMGLQDC 182 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~ 182 (557)
|++|++.+++.+||+||+.++.. .+ .+.. ....+.++++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999987521 00 0000 0001224568889999999754
Q ss_pred c-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc
Q 008676 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (557)
Q Consensus 183 ~-~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 261 (557)
. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++ ..+.++
T Consensus 148 ~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 333 457999999999999999999999999999999999999999999864 589999999995 678899
Q ss_pred CCeEEEeeCCeE-EEEcCcchHH
Q 008676 262 FDRLYLLSGGKT-VYFGETSAAF 283 (557)
Q Consensus 262 ~D~v~~L~~G~i-v~~G~~~~~~ 283 (557)
||++++|++|++ ++.|++++..
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHH
Confidence 999999999999 4889887654
No 320
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.3e-38 Score=381.26 Aligned_cols=213 Identities=25% Similarity=0.308 Sum_probs=182.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..|+|+||+++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ . +|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999952 24679999999999999999999999999999999999986 3 8999999998642
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSg 197 (557)
.+++++||||++.+|+. |+||||.... ..+. +.+.++++..+| .+..|+.+|+ ...+|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 24679999999999997 9999995421 1122 345667777766 3467899986 5667999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 4799999999963 45569999999999999999
Q ss_pred CcchHHH
Q 008676 278 ETSAAFE 284 (557)
Q Consensus 278 ~~~~~~~ 284 (557)
+++++.+
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9988763
No 321
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-38 Score=302.97 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=159.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcccE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (557)
++++|+++.+. ++.+++ +|+++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 78999999982 344555 99999999999999999999999999999999886 9999999987532 12458
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~ 210 (557)
+|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++|||+++
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865332 1 124567788999998766664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 008676 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (557)
Q Consensus 211 ~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 265 (557)
.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++. . ...+|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-c-cchhhee
Confidence 999999999999999999999999999877778899999999974 3 3446654
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=294.83 Aligned_cols=192 Identities=25% Similarity=0.435 Sum_probs=168.7
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCC
Q 008676 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~ 141 (557)
.+..+|+++||.+++||..+|.||||||||||+|+++-+.+|+ +|++++.|++... .+.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4577999999999999999999999999999999999999986 9999999998643 2467999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
. ||++|+.|...++.... .+++..+.|+++++.+. .++ .+..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 99999999877653221 24567788999999764 344 445799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
|||+||+.+++.|-++|.++. +++..++.+||++ .+..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999986 5789999999997 577899999999999876
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.9e-38 Score=347.45 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++||++.|. +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3599999999982 1467999999999999999999999999999999999999886 899999752 46
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhc-c------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMP--------------------WSEKRTLVERTIIE 176 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (557)
+|||+|++.+++.+||.||+.++... + ...... ..+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 99999999999999999999875310 0 000000 00123567888999
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008676 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+||.. .++.+ .+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||++ +
T Consensus 152 ~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 55544 5799999999999999999999999999999999999999999998873 5999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEcCcchH
Q 008676 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (557)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (557)
.+.++||+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 78887654
No 324
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.3e-38 Score=306.94 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=161.1
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008676 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|. ++|... .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999886 99997 777532 13345678899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008676 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
+.+....+ .....+. .+.+.+.++|+...++.+ +.||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 223445567877777655 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHHh
Q 008676 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (557)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (557)
++..+.+.|.+..+ ++|+|++||++ .++.++||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999996 578889999999999999999999988776654
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=342.83 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=176.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~--- 126 (557)
..++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 358999998852 35999999999999999999999999999999999999886 99999999875321
Q ss_pred ---cccEEEEccCC---CCCCCCCHHHHHHHHh-hccCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008676 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP-DK-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (557)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 196 (557)
++.++|++|+. .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++. +.+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 23489999985 4788899888743321 00000 01 12233456678899999995 445664 45799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||||+||++++.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++|||+++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999995 688999999999999999987
Q ss_pred cCcc
Q 008676 277 GETS 280 (557)
Q Consensus 277 G~~~ 280 (557)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7653
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=315.05 Aligned_cols=227 Identities=27% Similarity=0.363 Sum_probs=196.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~--~~~~G~I~~~G~~~~---- 124 (557)
-|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.++|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 489999999997543 4578999999999999999999999999999999999998752 345899999998731
Q ss_pred -----CCcccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 -----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+-.+|+++||+| .+.|-.|+..-+.-..++. .+++.++.++++.++|+.+|+.+-.... +.+|++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1224799999997 5778778888887665543 4567888889999999999998754432 348999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||||||.||+||+++|++||.||||++||...+.+|+++|++|.+ .|..++++|||. .-+.+++|||.+|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 999999999999999999999999999999999999999999976 599999999995 689999999999999999999
Q ss_pred cCcchHH
Q 008676 277 GETSAAF 283 (557)
Q Consensus 277 G~~~~~~ 283 (557)
|+++++.
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9988775
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.7e-37 Score=308.75 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=156.9
Q ss_pred cceeceeEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCC
Q 008676 70 NVLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 70 ~iL~~vs~~i~-----~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (557)
..++|++++++ +||+++|+||||||||||+++|+|+++|+ +|+|.++|. .++|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCC
Confidence 36677777775 79999999999999999999999999886 899999984 5899999988777889
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 224 (557)
|+|++.+...... . ......++++.++|.+..++.+ ..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 1133567889999987777654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE--EEcCcch
Q 008676 225 LDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA 281 (557)
Q Consensus 225 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 281 (557)
||+.++..+.+.|+++++ .|+|||++||++ .++..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999976 589999999995 6788899999999765433 3344444
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-37 Score=344.16 Aligned_cols=211 Identities=25% Similarity=0.317 Sum_probs=173.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.|. +++.+|+|+||++++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3589999999983 1457999999999999999999999999999999999999886 899999752 46
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhc-c------------CCCCCCHH--------------------HHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMPWS--------------------EKRTLVERTIIE 176 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~~~--------------------~~~~~v~~~l~~ 176 (557)
++||+|++.+++.+||+||+.++... + ........ +...++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 00000000 012456677888
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008676 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
+|+.. .++. ++.|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4554 4579999999999999999999999999999999999999999999876 35999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008676 257 EVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
.+..+||++++|++|+++ +.|+.++..
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 788999999999999976 778877644
No 329
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=343.15 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=173.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3456999999999999999999999999999999999999886 899999874 46
Q ss_pred EEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 008676 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
++|++|++. +++.+|++|++.+... . . ..+++++++++.+|+. +..++.+ ..||||||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHH
Confidence 999999864 5667899999864211 1 1 1135578899999994 5566644 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++ +++.++||++++|++|+++ +.|++++..
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35999999995 6888999999999999998 788876543
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-37 Score=341.21 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=172.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|..++. .+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 359999999998 3456999999999999999999999999999999999986541 28999999975321
Q ss_pred --CcccEEEEccCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 008676 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (557)
.++.++|++|++.++. ..++++++.+.... ....... .+.+++++++++.+||.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999876543 34777776543211 0111111 223456889999999987 667654 569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHh-cCCeEEEeeCCeEEEE
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~ 276 (557)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998765 4699999996 56766 5999999999998765
Q ss_pred c
Q 008676 277 G 277 (557)
Q Consensus 277 G 277 (557)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-37 Score=305.30 Aligned_cols=190 Identities=29% Similarity=0.382 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEEccC--ccc--ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 008676 51 RLTWKDLTVMVTLSN--GET--HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS 126 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~--~~~--~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~ 126 (557)
.++.+||++.|..+. ... ..+++||||++++||+++|+|+||||||||-|+|.|+++|+ +|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhc
Confidence 589999999997642 112 47999999999999999999999999999999999999996 99999999874321
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 008676 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
. ..+..+++.++|+.+||.. .+++ ++++||||||||++|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHHH
Confidence 1 2345577999999999865 3333 788999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
||||+.+|+++++|||+|+||...+.+++++|+++.+ .|.|.++++||. +.+..++|||.+|+.|++++.|+.+++..
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999987 599999999995 68999999999999999999999988754
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-38 Score=301.01 Aligned_cols=216 Identities=27% Similarity=0.377 Sum_probs=183.9
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---- 124 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---- 124 (557)
..-|+++|+++.+ ++|+||+|+|++|++||-.+|+|||||||||||++++|..+|. +|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcc
Confidence 4569999999998 6789999999999999999999999999999999999999886 999999998632
Q ss_pred --CCcccEEEEccC--CCCCCCCCHHHHHHHHh--hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 008676 125 --LSFGTAAYVTQD--DNLIGTLTVRETISYSA--RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (557)
Q Consensus 125 --~~~~~~~yv~Q~--~~l~~~lTV~e~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (557)
..+++||||.-. ..+.+..+|+|-+.-+. ..........++..+++..+++.+|+.+.+|...+ .||-|
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~G 175 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQG 175 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCHh
Confidence 124679999654 33455678888775432 11112212345566788999999999999998775 59999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
|||||.|||||+++|.+||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+...+++++++++|+++++
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeec
Confidence 999999999999999999999999999999999999999999875 88999999996 789999999999999999998
Q ss_pred cC
Q 008676 277 GE 278 (557)
Q Consensus 277 G~ 278 (557)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 74
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=288.93 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=190.7
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G-~~~~~--- 125 (557)
..|+.+|+++++ ++..+|+|+||++.+||+-+|+|||||||||+|++|+|..+|. +|++.++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 458999999999 5678999999999999999999999999999999999999886 89999999 44321
Q ss_pred ---CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
.+..||--+|.|..|..+||+|||..+.+...+- .....+.+++++++|...||.+..+...+ .||.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 1245788999999999999999999986432110 01123456789999999999998887665 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||||++.|++-++.+|++|++|||++|+-.....+.-++|+.++. +++|+++-|| ...+.+++|+|.+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999976 5899999999 57999999999999999999999
Q ss_pred CcchHH
Q 008676 278 ETSAAF 283 (557)
Q Consensus 278 ~~~~~~ 283 (557)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988764
No 334
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=302.59 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=180.5
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEc-cCCCCCCCC
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~-Q~~~l~~~l 143 (557)
..+.+||||+|++|++++++|||||||||+||+|+|++.|+ +|.|.++|...... -+++++|+ |.-.+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 35899999999999999999999999999999999999986 99999999864321 14566654 445666677
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008676 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
.+.|.+......+ .++.++.+++.+.+.+.++|+...+.++ |.||-|||.|+.||.+|+++|++|||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 7888887765554 5677888899999999999988777644 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHHHHH
Q 008676 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 287 (557)
|||..++..+.+.|++..+ .+.||+++||+. .++..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999976 689999999995 68999999999999999999999998876553
No 335
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-37 Score=371.53 Aligned_cols=237 Identities=24% Similarity=0.281 Sum_probs=187.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++.... . +.. .. .....++++|+++.++.+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~---~------------~~~--~~-~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA---Q------------NPP--LQ-PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc---c------------cCC--cC-CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 578999999999986653211 0 000 00 011259999999998521 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
||.++|+||||||||||+++|.|.++|. +|.+. ..++.++||+|++.+|+. |++|||.|+.. .
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------F 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------c
Confidence 9999999999999999999999999885 77553 123579999999999987 99999999742 1
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008676 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
++ ++.+++++..+ |++..+|.||+ ++.+||||||||++||||++++|+|+|||||||+||+.++.++.
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 12 22344444433 45667899997 46679999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 235 ~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+. ++.+ .+|+|+|++||++. ....+|+|++|++|++++.|+.+++.
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 65 4443 36899999999963 46789999999999999999988875
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-36 Score=368.97 Aligned_cols=236 Identities=23% Similarity=0.297 Sum_probs=188.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++.... + ..+ .. .....++++|+++.++.+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~-~~~---------~~-----~~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P-NPP---------LE-----PGLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c-CCc---------cc-----CCCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 578899999999976543211 0 000 00 011259999999998521 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~-G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
||.++|+||||||||||+++|.|.+++. + |+|.+. +.++||+|++.+|+. |++|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999885 8 899863 468999999999986 999999987431
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008676 161 MPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
+ +++.+++++..+| ++..+|.||+ ++..||||||||++||||+.++|+|+|||||||+||++++.++
T Consensus 706 -d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -D----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -c----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 1 1334445554443 5567899997 4567999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 234 ~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.+ .++.+. +|+|+|++||++ .....+|+|++|++|++++.|+.+++.
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 455543 589999999996 357789999999999999999988875
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-36 Score=336.73 Aligned_cols=203 Identities=23% Similarity=0.309 Sum_probs=169.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 008676 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+||++|++ .+++.+||+||+.+...... .... .....++++.+++.+ ..++.+ .+||||||||++||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 78889999999988643221 1111 123456899999964 456644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEE-EEcCcc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~ 280 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++..+||++++|++ |++. +.|+.+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999873 4 899999995 688999999999985 7876 456544
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-37 Score=288.20 Aligned_cols=217 Identities=26% Similarity=0.391 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----- 126 (557)
++++|+++.+.......+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4566777776544455688999999999999999999999999999999999999986 99999999986432
Q ss_pred cccEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCcccCCCCHHH
Q 008676 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIE--MGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 127 ~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
...++-|+||| ..++.||+.||+..+.......+.+. ..+++...+.++. +||++..++.+|- |||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchH
Confidence 23467899997 46999999999999865422222222 2233334444555 4677888888874 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
||-+++++|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||+ ..++.++.+|.++|++|+||.+-
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn-m~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN-MEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc-HHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999999999866 57899999999 47899999999999999999763
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.4e-36 Score=335.52 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=168.9
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+.+|+ +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 359999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 008676 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
++|++|++ .+++.+||.||+.+..... ..... ..++.++++.+|+.+ ..++.+ ..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 4788899999998864321 11111 123557899999964 456644 569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC-CeEE-EEcCc
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGET 279 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~ 279 (557)
+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++ ..+.++||++++|++ |+++ +.|+.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999873 3 899999995 678899999999986 5776 44554
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.1e-36 Score=336.30 Aligned_cols=199 Identities=24% Similarity=0.284 Sum_probs=172.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.+. +. .|+++|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 4599999999872 22 599999999999999999999999999999999999886 8999986 15
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
++|++|+..+++.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHH
Confidence 899999988888999999998753211 11 134678999999987777755 56999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcc
Q 008676 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (557)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||+ .++..++||+++|+ |++...|...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999999977 489999999995 67889999999996 4887777643
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.7e-36 Score=342.26 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999873 2346999999999999999999999999999999999999875 89998864 2569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCCHHHHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~ia 206 (557)
+||+|++.+++. |++||+.++........ ....++.+.++++.+++.+..++..| ...+..||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999987642210000 00112456788999998765443221 013468999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|+|+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999964 458899999997
No 342
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=313.14 Aligned_cols=216 Identities=30% Similarity=0.399 Sum_probs=183.6
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..+.|.|+++.|. +.+++|+++||++++|+.+|++||||+||||++++|-.+++++ +|.|.+||++++.
T Consensus 261 g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~ 333 (497)
T COG5265 261 GAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333 (497)
T ss_pred ceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHH
Confidence 3589999999984 5788999999999999999999999999999999999999987 9999999998542
Q ss_pred -CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHH
Q 008676 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (557)
.++-||.||||..||.+ |...|+.++..- .+.++..+ .+...++ .+++.+|+.||+.+. .|||||
T Consensus 334 slR~aIg~VPQDtvLFND-ti~yni~ygr~~-----at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSgge 404 (497)
T COG5265 334 SLRRAIGIVPQDTVLFND-TIAYNIKYGRPD-----ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGE 404 (497)
T ss_pred HHHHHhCcCcccceehhh-hHHHHHhccCcc-----ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCch
Confidence 24669999999999987 999999987432 23333322 2233333 467889999998443 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
||||+|||+++++|+||++||.||+||..+.++|...|++.+ .|+|.+++.|..+ . .--+|.|++|++|++++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-t-i~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-T-IIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-h-ccCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999986 5899999999975 3 345999999999999999998
Q ss_pred chHHH
Q 008676 280 SAAFE 284 (557)
Q Consensus 280 ~~~~~ 284 (557)
++++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 77654
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.6e-36 Score=302.00 Aligned_cols=198 Identities=25% Similarity=0.317 Sum_probs=163.2
Q ss_pred eEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 008676 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (557)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-----------~~G~~~~ 124 (557)
|++++|. ..+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|+ ++|++..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 5666662 2235999999 59999999999999999999999999999986 99996 7787642
Q ss_pred C-----C--cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 008676 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (557)
Q Consensus 125 ~-----~--~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (557)
. . ...++|++|...+++. ++.+++.+... ....++.+.++++.+||.+..++. +..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRN-----IDQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1 1 1237899999888875 88888876421 122345678899999998766664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 198 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
|||||++||++|+.+|+++++||||++||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++.+.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999988889999999995 67888999999995 5565544
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=335.97 Aligned_cols=202 Identities=28% Similarity=0.366 Sum_probs=171.0
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|.++|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 359999999998 3467999999999999999999999999999999999999886 999999742 25
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 008676 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 130 ~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+||++|+. .+.+..|+.+++.. .. .......+.++|+.+++.. ..++.+ +.|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 35566788877632 11 1122356788999999963 566655 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHH
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (557)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+.++||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 999999995 6888999999999999997 888887653
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-35 Score=361.05 Aligned_cols=243 Identities=22% Similarity=0.316 Sum_probs=187.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
++..|.+||.++++.++...... +... ........++++|+++.+.. ..+.+|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~-------------~~~~--~~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSI-------------ERRT--IKPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccc-------------cccc--cCCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 57889999999997654421100 0000 00001125999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
||+++|+||||||||||+++|+|.++|. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999886 99999987 4899999998876 5999999986321
Q ss_pred CHHHHHHHHH--HHHHHcCC-CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008676 162 PWSEKRTLVE--RTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (557)
Q Consensus 162 ~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~ 238 (557)
..+..++..+ .+.+.++. ++..+|.+|+ ++.+||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1111111111 12233332 3455788886 567899999999999999999999999999999999999999999997
Q ss_pred HHH--hCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 239 ~l~--~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
+.. .+|+|+|++||++. . ...+|+|++|++|+++..|+.+++.
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 532 35799999999973 4 4569999999999999999988875
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-35 Score=273.37 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++++|+++.+ +++.+|+++|+++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..++
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTY-----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEE-----CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 4688999987 2346999999999999999999999999999999999999886 999999985 4689
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 211 (557)
|++| ||+||+||++|||+|+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 212 ~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++ +++.+++|++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999995 67888999999999985
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=267.65 Aligned_cols=193 Identities=26% Similarity=0.386 Sum_probs=167.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---~~ 127 (557)
.+.++|++... +++..|-|+|++|.+||++.||||||||||||+..+.|.+.+.-..+|++++|+++.+. ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 46788988665 56789999999999999999999999999999999999998877789999999987542 35
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+++|.++||+.+||+++|.+||.|+. |..+....+++.++..|++.||....+. .+..||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 78999999999999999999999874 3344445677788999999999987776 45679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCCchHH
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~~~i 258 (557)
+|+..|+.++||||+|.||..-+.++.+..-. ....|..+|.+|||. .++
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 99999999999999999999999999998754 445799999999994 444
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.9e-35 Score=280.36 Aligned_cols=156 Identities=28% Similarity=0.420 Sum_probs=137.2
Q ss_pred EeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEc
Q 008676 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (557)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~ 134 (557)
.|+++.+ +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5778877 346789885 899999999999999999999999999999886 9999999863 78888
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008676 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
|+.. ||||||||++|||+|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE--cCcchHH
Q 008676 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~~~ 283 (557)
+++|||||+|||+.++..+.+.|+++++++ .|+|++||++ .++.++||++++|+++-.++. |++...+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999999997764 9999999995 678889999999998776655 6665443
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-35 Score=282.18 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEcc-------------------CcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 008676 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (557)
Q Consensus 51 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~ 111 (557)
.++++|+++.++.. +.....+|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 47778888777542 123457999999999999999999999999999999999999997
Q ss_pred ceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008676 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (557)
Q Consensus 112 ~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (557)
+|+|.++|+-.... -=.-.+-|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 -SGKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -CceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999999742111 11123557799999999987654 5678899999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.+|-||+-|++.|.|...+|+|||+||-.+-.|+.=+++-.+.++++.++++|+|+++|++ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 56999999999999999999999999999999999999999999999988889999999995 7899999999999999
Q ss_pred eEEEEcCcchHHHHHHh
Q 008676 272 KTVYFGETSAAFEFFAQ 288 (557)
Q Consensus 272 ~iv~~G~~~~~~~~f~~ 288 (557)
++.+.|+++++.+++..
T Consensus 224 ~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 224 QIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999999987765
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.4e-35 Score=332.11 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=170.5
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..|+++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----cE
Confidence 469999999988 3467999999999999999999999999999999999999886 999998 432 25
Q ss_pred EEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 008676 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~ 207 (557)
+||++|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++.+ +.|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 89999985 5889999999998753211 011 1134577889999985 4566655 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee-CCeEEE-EcCcch
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~ 281 (557)
+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+.++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 35999999994 68889999999998 799864 465444
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=330.83 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=165.5
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
|+++||++.| +++.+|+||||+|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 4577999999999999999999999999999999999998886 999999874 2478
Q ss_pred EEccCCCCCCCCCHHHHHHHHhh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 008676 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 186 (557)
|++|+...+. .|+.+++.-... +.. .......+.+.++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 9998653332 466554431100 000 00000112345788899999996 456765
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++|||. ..+.++||+++
T Consensus 147 ~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 VS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred hh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 54 69999999999999999999999999999999999999999998875 46999999995 68889999999
Q ss_pred EeeCCeEE-EEcCcchH
Q 008676 267 LLSGGKTV-YFGETSAA 282 (557)
Q Consensus 267 ~L~~G~iv-~~G~~~~~ 282 (557)
+|++|+++ |.|+.+..
T Consensus 218 ~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 99999996 66765543
No 352
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.2e-36 Score=345.01 Aligned_cols=223 Identities=27% Similarity=0.443 Sum_probs=203.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~---- 125 (557)
..+..+|+++.+... +.+++++|+.+++||+.+++|+|||||||++|+|.|..+|+ +|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 568899999988421 12999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 008676 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (557)
.++.+||+||.|.+++.+|.||++.+.++++ +++..+.++.++..++.+||.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 2466999999999999999999999999987 56677777889999999999999999775 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.||++||. .+|...+|||+.+|.+|++..-|++++++
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 99999999999999999999999999999999999999888899999999 58999999999999999999999999999
Q ss_pred HHHHh
Q 008676 284 EFFAQ 288 (557)
Q Consensus 284 ~~f~~ 288 (557)
..|..
T Consensus 787 srfG~ 791 (885)
T KOG0059|consen 787 SRYGS 791 (885)
T ss_pred hhcCC
Confidence 77643
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.9e-35 Score=277.95 Aligned_cols=159 Identities=28% Similarity=0.342 Sum_probs=132.9
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHH
Q 008676 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
..+.+|+|+||++++|++++|+||||||||||||+|.+ . +|++.++|......+..++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH-----------
Confidence 34679999999999999999999999999999999953 2 79999998743222334778877
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCC
Q 008676 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTS 223 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~--p~llllDEPts 223 (557)
.+.++.++|.. ..++ .++.||||||||++||++|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 13567778764 2454 3467999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE
Q 008676 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 274 (557)
|||+.++..+.+.|+++++.|+|||++||++ +++ +.+|++++|++|+..
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNL-DVL-SSADWIIDFGPGSGK 167 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEECCCCCC
Confidence 9999999999999999977899999999996 444 689999999765543
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-34 Score=327.46 Aligned_cols=206 Identities=24% Similarity=0.346 Sum_probs=167.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999883 2346999999999999999999999999999999999999886 899998753 36
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
++|++|+. ...+++.++.........+ ... .+++.++++.+|+.+ ..++. +..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHH
Confidence 89999975 3455666664432111111 111 245778999999974 45554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcchHHH
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (557)
|+.+|++|||||||+|||+.+...+.+.|++. .| |||++||++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999998888765 34 999999995 6788999999999999998 7787665433
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-35 Score=268.87 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=190.2
Q ss_pred EEEEeEEEEEEccC----cccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 008676 52 LTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-- 125 (557)
++++||++++.... .....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|.+||++...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~D 81 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccc
Confidence 67788888875431 23356899999999999999999999999999999999999996 9999999987532
Q ss_pred ---CcccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 008676 126 ---SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (557)
Q Consensus 126 ---~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (557)
+.++|-+++||+. +.|.+.+.+-|....++ ...+....+.+++.+.|+.+||-+. ++- +++.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchh
Confidence 2367899999974 67788888877776544 4456677888999999999998653 332 567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
||||++||||+.+|+|++.||...+||...+.+++++.-++.+ .|.+-|.++.+. .-+..++|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999976 599999999985 68999999999999999999999
Q ss_pred cchHHH
Q 008676 279 TSAAFE 284 (557)
Q Consensus 279 ~~~~~~ 284 (557)
+.++..
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 987653
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-34 Score=324.83 Aligned_cols=206 Identities=23% Similarity=0.322 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.| +++.+|+||||++++|++++|+||||||||||||+|+|..+|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 48999999998 3467999999999999999999999999999999999999886 899999873 136
Q ss_pred EEEccCCCCCCCCCHHHHHHHHh------------------------------hcc--CCCCCCHHHHHHHHHHHHHHcC
Q 008676 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLR--LPDKMPWSEKRTLVERTIIEMG 178 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~~lg 178 (557)
+|++|.+......+|.+++..+. .+. .. .....+.+.++.++++.+|
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCC
Confidence 78887654333346666542110 000 00 0000123456888999999
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 008676 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (557)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 258 (557)
+.. ++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||++ ..+
T Consensus 148 l~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 148 LDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 963 443 45799999999999999999999999999999999999999999998872 5999999995 678
Q ss_pred HhcCCeEEEeeCCeEE-EEcCcchH
Q 008676 259 FELFDRLYLLSGGKTV-YFGETSAA 282 (557)
Q Consensus 259 ~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (557)
.++||+|++|++|+++ +.|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 8999999999999997 55776543
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.3e-34 Score=347.44 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=158.5
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999986 99999987 48999999999886 99999
Q ss_pred HHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008676 149 ISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
+.|+.... ....++ ..++.++. +.+..+|.+|+ ++..||||||||++||||++.+|+++||||||+
T Consensus 507 I~~g~~~~------~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSYD------EYRYTSVIKACQLEEDIAL--FPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhccccc------hHHHHHHHHHHhHHHHHHh--ccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99874211 111111 11222222 23344677876 567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 224 GLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 224 gLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
|||+.++..+.+. ++++. +|+|+|++||++. .+ ..||+|++|++|+++..|+.++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999985 66664 5899999999974 44 569999999999999999988775
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=263.95 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~---~~--- 124 (557)
-++.+++|+.| +...-.+||||++.|||+.+|+|+|||||||||++|++++.|+ +|+|.+.-.+ ..
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 47888999888 3456789999999999999999999999999999999999997 8999986532 11
Q ss_pred --C------CcccEEEEccCCC--CC----CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 008676 125 --L------SFGTAAYVTQDDN--LI----GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (557)
Q Consensus 125 --~------~~~~~~yv~Q~~~--l~----~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (557)
. .+...|+|.|+|. +- ..-.+.|-+.-... ......++...++|+++.++.. .+. .
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~---RiD-D 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLD---RID-D 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCcc---ccc-C
Confidence 0 1124699999863 32 22234443322111 1123456778899999988643 222 3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.++.+|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.+.. -|..++++|||. .-+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 6789999999999999999999999999999999999999999999999976 599999999995 56777899999999
Q ss_pred CCeEEEEcCcchHHH
Q 008676 270 GGKTVYFGETSAAFE 284 (557)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (557)
+|+++++|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998877653
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=263.85 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.7
Q ss_pred EEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----Ccc
Q 008676 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (557)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (557)
++|+++.+. ++.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|+++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888872 357999999999999999999999999999999999999886 9999999986432 124
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
++.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ +++..+||++++|++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999877789999999995 67888899999999875
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=264.01 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc---
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~--- 127 (557)
.++.+||+..- .+..++.++||++.+||.+-|.|||||||||||++|+|+..|+ +|+|.++|.++...+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35667777764 4678999999999999999999999999999999999999997 999999998754322
Q ss_pred -ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+.+-|+-.++.+-+.+||.|||.|...+... . ....+.+.++.+||....|.+++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 4567999999999999999999998776432 1 12457788999999999999776 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
|-++..+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999988889999999999864
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.2e-34 Score=315.98 Aligned_cols=188 Identities=29% Similarity=0.384 Sum_probs=155.7
Q ss_pred EEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 008676 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL 125 (557)
Q Consensus 57 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~-----------~~G~~~~~ 125 (557)
+++.| +++..+|++++ .+++||+++|+||||||||||+|+|+|.++|+ +|+|. ++|.+...
T Consensus 79 ~~~~y----g~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRY----GVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEe----cCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHH
Confidence 45555 23346999999 99999999999999999999999999999987 89997 89976421
Q ss_pred -------CcccEEEEccCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008676 126 -------SFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
....++|.+|....+|. .||+|++... +.+.+++++++.++|.+..|+.++ +|
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~L 213 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----EL 213 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 11235665654333332 2999998631 123568899999999888887654 69
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|++|
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999995 6888999999999864
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-33 Score=322.63 Aligned_cols=240 Identities=25% Similarity=0.311 Sum_probs=192.5
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+++.+.+|+.+.+..+........+ .........++++|.+++.+. ......|+|||+++++
T Consensus 485 qa~VS~~Ri~~fl~~~e~~~~~~~~----------------~~~~~~~~~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSEELDPDSVER----------------SPDEAGENAIEIKNGSFSWDS--ESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCcccCcccccc----------------CCCCCCCceEEEeeeeEecCC--CCCcccccceeEEecC
Confidence 4678999999999765553321100 011122345899999988643 1234489999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (557)
|+++||+|+-|||||+||.+|.|..+.. +|+|.++|. ++||||.+.++.. ||||||.|+..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~d----- 609 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPYD----- 609 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCcccc-----
Confidence 9999999999999999999999999874 999999875 8999999999987 9999999985431
Q ss_pred CHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 008676 162 PWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (557)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 234 (557)
+++-+++++...| .+.-.|.||+ ++-+||||||||+++|||+.+|++|++||.|.|++|++...++.
T Consensus 610 -----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 610 -----EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred -----HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 2334445554444 3455688887 55679999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
+..-.-.-+++|+|++|||. +..+.+|.|++|++|++...|+.+|+.+
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 77554334689999999984 5688899999999999999999999873
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=303.67 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|+++|+++.+ +++.+++|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58899999999 5788999999999999999999999999999999999999886 899987542 368
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 008676 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (557)
+|++|++...+..||.+.+.-+..-. .+.. ...-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887653210 0000 0001123577888888898876
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 008676 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (557)
Q Consensus 184 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 263 (557)
++.++ +||||||.||+||++|+.+|++|||||||+.||..+..-+-+.|++. .| |+|++||| ...+-+.|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 77665 69999999999999999999999999999999999999999999864 56 99999999 789999999
Q ss_pred eEEEeeCCeEE-EEcCcch
Q 008676 264 RLYLLSGGKTV-YFGETSA 281 (557)
Q Consensus 264 ~v~~L~~G~iv-~~G~~~~ 281 (557)
+|+.++.|++. |.|.-+.
T Consensus 219 ~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 219 HILELDRGKLTPYKGNYSS 237 (530)
T ss_pred heEEecCCceeEecCCHHH
Confidence 99999999875 5565443
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-33 Score=323.21 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=193.9
Q ss_pred hhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCe
Q 008676 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (557)
+.|-+|+.|-.+.+++ ......+.. .+..|. ....|+|+|++++|.. +...||||||++|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~--pp~~WP----------~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESR--PPPSWP----------SKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCC--CCCCCC----------CCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 4567888888875555 110111110 122222 2346999999999953 34679999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHHHHHHHHhhccCC
Q 008676 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (557)
.+||+|..|||||||+++|-++..|. +|+|.+||.++.. .+++++.+||||.+|.+ |||.||.=..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~----- 1238 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD----- 1238 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----
Confidence 99999999999999999999999885 8999999998642 25779999999999998 9999986321
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 159 DKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
..++++ +-+.|+..+ ++...|+.|.+ .+.++|-||||.+++||||+++.+||+|||+|+++|+.+-.
T Consensus 1239 -e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1239 -EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred -ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 122322 233333333 34557787765 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHHH
Q 008676 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (557)
Q Consensus 232 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (557)
.|-+.||+-= +++|||.+.|+.. .+. -+|||+||++|+++++|+|.++.+
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998853 4799999999964 444 499999999999999999998864
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-32 Score=333.71 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=154.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999886 8999863 46999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008676 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
|+.|+.... .............++.++.+ .+..++.+|+ ++..||||||||++|||||+.+|+++||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853210 00000000001223333333 2233556664 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
.++..+++.+.....+|+|+|++||++ +. ...+|+|++|++|++++.|+.++..
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQV-HV-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999875432223589999999996 34 4679999999999999999988764
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=2.6e-32 Score=308.80 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=153.4
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--- 124 (557)
....|+++|+++.| +++.+|+|+||+|++|+.+||+|||||||||||++|+|+.....+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 34469999999999 3466999999999999999999999999999999999964111123677765433210
Q ss_pred --C-------C-------cccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHHHH
Q 008676 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (557)
Q Consensus 125 --~-------~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-------------------~~~~~ 169 (557)
. . ...++|++|++.+... ++.++.... .. ...+.. ..+++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-NK---DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-cc---cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0113444444322111 111111000 00 000111 23455
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 008676 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (557)
Q Consensus 170 v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 248 (557)
+.+++..+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 67778888885 3345544 579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCchHHHhcCCeEEEeeCCeEE-EEcCcch
Q 008676 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (557)
Q Consensus 249 ~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 281 (557)
++||+. ..+..+||++++|++|++. |.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999994 6788999999999999996 6776554
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=2e-31 Score=263.28 Aligned_cols=190 Identities=25% Similarity=0.288 Sum_probs=135.1
Q ss_pred ccccceeceeEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--E-e--CCCCccc
Q 008676 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--H-K--TKLSFGT 129 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl-~~L~g~~~~~~~~~G~I~~~-----------G--~-~--~~~~~~~ 129 (557)
.+..+|+||||++++||+++|+||||||||||+ ..+.. +|++.+. | . + .......
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 346799999999999999999999999999995 44431 1221110 0 0 0 0001112
Q ss_pred EEEEccCCC--CCCCCCHH---HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHH
Q 008676 130 AAYVTQDDN--LIGTLTVR---ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV 203 (557)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv 203 (557)
..+..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. ++++||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 334444432 23444544 2222221111 11112233 46789999975 3555 4567999999999
Q ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEE
Q 008676 204 SIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVY 275 (557)
Q Consensus 204 ~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~ 275 (557)
+||++|+.+| +++||||||+|||+.++..+.+.|++++++|.|+|++||++ +++ .+||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 59999999999999999999999999987899999999996 454 699999999 9999998
Q ss_pred Ec
Q 008676 276 FG 277 (557)
Q Consensus 276 ~G 277 (557)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-32 Score=245.73 Aligned_cols=209 Identities=26% Similarity=0.357 Sum_probs=172.5
Q ss_pred EEEEEeEEEEEEc--cCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 008676 51 RLTWKDLTVMVTL--SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK-- 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~--~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~--~~-- 124 (557)
.+..+|+++++.. .++-.-.+|+|+||+++.||++++-||||||||||||+|-|.+.|+ +|+|++.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 4778888887754 2333457999999999999999999999999999999999999987 9999986432 11
Q ss_pred ---------CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008676 125 ---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (557)
Q Consensus 125 ---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (557)
.+++.+|||.|.-...|..+..|..+-...- .+++.+..+.++..++.++++.+..=.. .|..+
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 1235689999988888888877776655432 2566777788899999999997643322 46689
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 196 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||||+|||.|||.++.|-+||+|||||+.||..++..++++|++-+..|..+|=+-|| .+--...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988899999999999 4445667999998763
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2.8e-31 Score=241.13 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.2
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCCCHH
Q 008676 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 146 (557)
|+|||+++++|++++|+|+||||||||+++|+|..++. +|+|.+||.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 9999999998643 236799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 008676 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 223 (557)
|| ...++++++++.+++.+..++.++. ....||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 1235588899999998888888765 447899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.7e-30 Score=256.69 Aligned_cols=195 Identities=27% Similarity=0.344 Sum_probs=151.2
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCC--C------CceeEEEECCEeCCCCc---
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRL-----ASN--A------FLSGTILLNGHKTKLSF--- 127 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~-----g~~-----~~~--~------~~~G~I~~~G~~~~~~~--- 127 (557)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .|. . ...--|.+|..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998652 110 010 0 01123666665431100
Q ss_pred ----------------------------ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 008676 128 ----------------------------GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (557)
Q Consensus 128 ----------------------------~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (557)
..+.|..++...+..+||.|++.|...+. ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 01345666666668899999999876532 12456789999999
Q ss_pred Cc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008676 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 180 ~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
.+ ..+. .++.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~- 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL- 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-
Confidence 76 3455 3457999999999999999996 799999999999999999999999999988899999999996
Q ss_pred hHHHhcCCeEEEe------eCCeEEEEcCc
Q 008676 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (557)
Q Consensus 256 ~~i~~~~D~v~~L------~~G~iv~~G~~ 279 (557)
..+ +.+|+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 444 679999999 89999999974
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=262.72 Aligned_cols=214 Identities=25% Similarity=0.422 Sum_probs=178.8
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-- 126 (557)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 445777777542 2589999999999999999999999999999999976664 89999999985432
Q ss_pred ----cccEEEEccC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008676 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (557)
Q Consensus 127 ----~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (557)
...++|||.| ..++..++|++|+.++...+.. . -++.+..++.++++.+.+++.. ..+..+ ..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCC
Confidence 2358999998 5689999999999988222211 1 2455666678889999998853 234444 5699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 276 (557)
||.+|||.|||.|..+|++|||||||.|.|.-+..+|.+++++++++|++||++|.+ .+|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-LPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 5899999999999999999865
Q ss_pred cCcc
Q 008676 277 GETS 280 (557)
Q Consensus 277 G~~~ 280 (557)
=+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4433
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=9.5e-29 Score=269.13 Aligned_cols=203 Identities=28% Similarity=0.351 Sum_probs=168.0
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
....++++|+++.|. +++.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 345799999999983 2378999999999999999999999999999999999998885 899987421
Q ss_pred ccEEEEccCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 008676 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
-.+||..|+. .+.+..|+.|++.-.. +.. .+..+...|..+++.. ...++| +.||||||.|+.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~~-----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGF----PDG-----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhC----ccc-----cHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHH
Confidence 3589999985 4557789999986432 111 1456788999999974 344544 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEE-cCcchH
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAA 282 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~ 282 (557)
|+.++.+|.+|||||||+.||..+...+.+.|.++ .-|||++||| ...+.+++++++.+.+ ++..+ |..++.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999999887 3599999999 5899999999999998 55443 665443
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=2.8e-29 Score=242.79 Aligned_cols=165 Identities=27% Similarity=0.356 Sum_probs=130.1
Q ss_pred eceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CcccEEEEccCCCCCCCCC
Q 008676 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (557)
Q Consensus 73 ~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~------~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (557)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 99999999999999999999987543 1124568777775422 236799999998765
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeC
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDE 220 (557)
|. .. ..++++++++. .+..++ .+..||||||||++||++++ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 02346666665 333444 44679999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||+|||+.....+.+.|+++++ +.|||++||++ .. .+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 9999999999999999999865 68999999996 34 578999999974
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=3.5e-30 Score=235.26 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~----- 125 (557)
.+.++|+++.- -|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 35666766532 37789999999999999999999999999999999865 8999999998532
Q ss_pred CcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..++-+|+.|+..-...|.|.+++... .| .++....++++...++|.+...+. ...|||||-|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLH----QP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEE
Confidence 124568999987666678999988653 22 355666788889999998776654 45799999999999
Q ss_pred HHHHHh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 206 a~aL~~-----~p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|...+. || ++|+||||.++||...+..+-..|.++++.|.+||++.||. +...+.+|++.+|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecc
Confidence 987764 44 69999999999999999999999999999999999999996 57889999999999999999999
Q ss_pred cchHH
Q 008676 279 TSAAF 283 (557)
Q Consensus 279 ~~~~~ 283 (557)
.+|++
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 98876
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.1e-27 Score=238.99 Aligned_cols=183 Identities=20% Similarity=0.332 Sum_probs=129.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEeC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR----------------LASNAFLSG--------TILLNGHKT 123 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~----------------~~~~~~~~G--------~I~~~G~~~ 123 (557)
++.++++++ |++++|+||||||||||+++|++. +.++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 466888887 789999999999999999999843 2222 33 555555321
Q ss_pred ----C-C---CcccEEEEccCCCCCC-CCCHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 008676 124 ----K-L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 124 ----~-~---~~~~~~yv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
. . ..+.++|++|+..+++ ..|..|...+............ .....++. +.+++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc-----ccc
Confidence 0 0 1245889999887776 4677776666554432211000 00011222 22444433344 445
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.||||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +.++|+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888874 6789999999996
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.7e-29 Score=242.76 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=139.5
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCccc
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-~~~~~ 129 (557)
.++++|.. .| +++.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...++
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 33 35678999987 89999999999999999999722 222211 11246
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (557)
++|++|+..+++.+|++|++.+....... .+...+.... ...++++.++|.+..++.+ +.||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHH
Confidence 88999998888999999987765433100 0111111010 1245566778877777654 4699999999
Q ss_pred HHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 203 VSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 203 v~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++||++++. +|+++++||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.++||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999974 479999999999999999999999999985 467889999984 68899999999974
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.9e-27 Score=236.41 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=136.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-C------CCcccEEEEccCC---------CCCCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-K------LSFGTAAYVTQDD---------NLIGTLT 144 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~-~~-~------~~~~~~~yv~Q~~---------~l~~~lT 144 (557)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. . .....+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998763 2467777765 21 1 1234689999985 3456789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCCHHHHHHHHHHHHH
Q 008676 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (557)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~ia~aL 209 (557)
|.+++......+.... .+....+.+.+.++.+|+...... ..-+..+..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988866432211000 122334678889999998621000 011224568999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 210 ~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+ .+|+++++||||++||+.++..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999993 6788999999876
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.6e-27 Score=239.00 Aligned_cols=234 Identities=24% Similarity=0.264 Sum_probs=177.7
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCcccccceeceeEEEeC
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (557)
+|.+|.++|.++...++..+ + .++|+-.+ --.++++|+.|.|.. ..-=+..||++|++
T Consensus 291 ~AqvA~~kiakle~~~~~a~--~-----------~~~q~~p~-----~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD--F-----------PRPQAFPD-----WKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc--C-----------CCCCcCCc-----ccceeeeeeeeccCc----ccceecceeeEEec
Confidence 47789999988876444422 1 12222211 225999999998842 22458899999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
||++-|+|.||||||||++.|.|++.|+ +|+|.+||++++.. ++.++-|+-|-++|+.+-
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986432 233455666666666521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
.++.. ...+.++.+|+++.|.|...-.=|+-..-.||.|||||+++-.||+-+-+|+++||=.+.-||.-++.+.+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 123457788888888765332223223456999999999999999999999999999999999999999887
Q ss_pred HH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 237 LR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 237 L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+- .++++|+||+.+|||. .-+..+||++.+++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 64 5667899999999995 468999999999999998654
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=3e-26 Score=224.42 Aligned_cols=190 Identities=20% Similarity=0.209 Sum_probs=130.9
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEe-CCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCE----eCC
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGH----KTK 124 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~~ilG~sGaGKSTLl~~L~g~~-~~~~~~~G~I~~~G~----~~~ 124 (557)
.|+++|.. .|. +. ++++|... +|++++|+||||||||||+++|++.+ .+. .+....+.. ...
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 47777776 441 12 55666543 58999999999999999999999643 221 333332211 111
Q ss_pred CCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 008676 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (557)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (557)
.....+++++|++.... ++.... ..+.++..+.+ .++..++.+..+. .+..||||||||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHH
Confidence 22356889998863211 111111 22222221111 1233334444444 44579999999999
Q ss_pred HHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 205 IALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 205 ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
||++|+. +|+++|+||||++||+.+...+.+.|++++++|.|+|++||++ +.+...+|+++++++|.
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999985 6789999999999999999999999999987799999999996 67888999999999875
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=3.3e-26 Score=248.26 Aligned_cols=197 Identities=27% Similarity=0.384 Sum_probs=159.3
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++++|+++.-+ .++..|++.|+.+++||-+.|.||||||||||+|+|+|+-+.. +|+|..- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999999864 3468999999999999999999999999999999999998875 7877543 124
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCCHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIAL 207 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRv~ia~ 207 (557)
.+-|+||.|.+... |.||-+.+..... ..+ .+.+.++|.++||.+..+..=+ +..-+.||+|||||+++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999998777 9999998753221 122 3457788999999876554221 1134569999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.|+++|++++|||.|++||+.++..+.+.+++-. .+.|||-+.|++ .+..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999998742 479999999996 4567777766654
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=235.13 Aligned_cols=222 Identities=27% Similarity=0.376 Sum_probs=188.8
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-C--
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-K-- 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~-~-- 124 (557)
....|+++||++.-. .+...+++|||++++||+++|.|=.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 356799999998642 2356899999999999999999999999999999999998775 79999999985 1
Q ss_pred -C---CcccEEEEccCC---CCCCCCCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 008676 125 -L---SFGTAAYVTQDD---NLIGTLTVRETISYSARLRL----PDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (557)
Q Consensus 125 -~---~~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 192 (557)
. ....++|||+|. .+.+.+|+.||+.+...-+. ..-+.+.+.++...++++++++... .+. ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 1 124589999985 57889999999988754321 1125567788889999999998733 233 34
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
+.||||.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.++.|+.|++++.+ .+|++.++|||.+|.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED-LDEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh-HHHHHHhhheeeeeeCCc
Confidence 6799999999999999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred EEEEcCcchH
Q 008676 273 TVYFGETSAA 282 (557)
Q Consensus 273 iv~~G~~~~~ 282 (557)
++...+++++
T Consensus 481 i~~~~~~~~~ 490 (501)
T COG3845 481 IVGIVPPEEA 490 (501)
T ss_pred eecccccccC
Confidence 9988877653
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=8.3e-26 Score=269.93 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCC
Q 008676 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (557)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~---~~p~ 214 (557)
.+...||.|+|.+...-.........+..+++ ++++.+||.+. .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 46678999999887542211111233445556 58889999765 5654 4579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee------CCeEEEEcCcchHH
Q 008676 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 283 (557)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.+|++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999988899999999996 455 8999999996 79999999998865
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=2.5e-26 Score=223.39 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=124.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCcccEEEEccCC-----CCCCC
Q 008676 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDD-----NLIGT 142 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~----g~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~-----~l~~~ 142 (557)
..++++.+| +++|+||||||||||+++|. |...++ +|.+..+.... ......+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 55554221111 12235689999987 44455
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH------HHHHHHHHhCCCEE
Q 008676 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLL 216 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~aL~~~p~ll 216 (557)
+|+.|++.+.. . ..+++.+ +. .++.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 68888885421 1 1122232 22 446799999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 217 FLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 217 llDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++||||++||+.++. .+.+.|++++++ |.|||++||++ . ....+|+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 999999999999999 999999999776 89999999995 3 4578999999963
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=6.3e-25 Score=252.75 Aligned_cols=125 Identities=29% Similarity=0.387 Sum_probs=106.2
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 008676 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llll 218 (557)
+||.|++.|...+. . .....+.++.+||.+ ..+.. +..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999975 34554 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999996 444 679999999 799999999988764
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.1e-25 Score=211.27 Aligned_cols=229 Identities=20% Similarity=0.256 Sum_probs=176.6
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeC-C----C
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKT-K----L 125 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~-~~G~I~~~G~~~-~----~ 125 (557)
+.++||+..+....+ ..+++++||+++..||+-+++|+||||||-..|+|+|..+.+-. +.....+++.+. + .
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 567899988876543 46799999999999999999999999999999999998764211 122344555431 1 1
Q ss_pred C----cccEEEEccCCC--CCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008676 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (557)
Q Consensus 126 ~----~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (557)
+ .+.+++++|++. +-|.-+|...|.-....+..++..+ .-+++++-++|..+|+.+..|-. ..++.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhc
Confidence 1 135789999974 4555555444433222111111111 12356678899999998876643 34788999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|..+|.++.+ +|.||++++||. ..+.+.||++-||.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999976 689999999995 68999999999999999999
Q ss_pred EcCcchHHH
Q 008676 276 FGETSAAFE 284 (557)
Q Consensus 276 ~G~~~~~~~ 284 (557)
.++.+++.+
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999888764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=5.8e-24 Score=244.41 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEE
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~---~p~lll 217 (557)
.|||.|.+.|...+. . ..+..++++.+||... .+.. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467778877765432 1 1234578888999753 4443 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchH
Q 008676 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (557)
Q Consensus 218 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 282 (557)
|||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ +.+|++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988899999999996 444 679999999 79999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=2e-24 Score=227.05 Aligned_cols=215 Identities=25% Similarity=0.320 Sum_probs=146.5
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-c
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-F 127 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~-~ 127 (557)
.-.+.+.|+++.+ .++.+++|++|++.+|+-++|+|+|||||||+|++|.|...|.....+...++ ++.... .
T Consensus 73 s~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEK 146 (614)
T ss_pred cccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchH
Confidence 3458999999988 56889999999999999999999999999999999999988742222222221 111000 0
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhh-ccC----------------CCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSAR-LRL----------------PDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 189 (557)
..+-++.+ +.-..+.-+..... +.. ...+..+..+.++.++|..+|.. +..++.
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~--- 218 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK--- 218 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH---
Confidence 00101110 00011111111100 000 00112233345566666666643 445554
Q ss_pred cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 190 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
..++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+.-+ .++++++|. .+.+-..|.+|+.|+
T Consensus 219 --~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 219 --VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLD 293 (614)
T ss_pred --hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheec
Confidence 457999999999999999999999999999999999999999999877632 289999998 578999999999999
Q ss_pred CCeE-EEEcCcchH
Q 008676 270 GGKT-VYFGETSAA 282 (557)
Q Consensus 270 ~G~i-v~~G~~~~~ 282 (557)
+++. .|.|+.++.
T Consensus 294 ~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQY 307 (614)
T ss_pred ccceeeecCCHHHH
Confidence 9994 566776554
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=217.24 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=152.3
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...++|.++++.+. ---|.==.+++..||+++++||||-||||+.++|+|.+.|+ +|+ .. .-
T Consensus 340 ~~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~ 401 (591)
T COG1245 340 DTLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DL 401 (591)
T ss_pred ceeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cc
Confidence 44578888887762 22455566788889999999999999999999999999997 776 11 13
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 008676 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (557)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 208 (557)
+++|=||--.--...||++.|.-...-....+ -...++++-+.|++..+..+ .+|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHH
Confidence 47888886444455699998876544321111 22456777888988888866 4699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
|.+++++++||||++-||.+.+..+.+.|+++.. .++|.+++-||. ..+.-++||+++.+
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999987 589999999996 56777899999885
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.3e-23 Score=203.45 Aligned_cols=168 Identities=19% Similarity=0.194 Sum_probs=120.5
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCcccEEEEccCCCCCCCCCH
Q 008676 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 145 (557)
++++++.+.+| +++|+||||||||||+.+|........ . ....|.. . ......+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888887 889999999999999999974332210 0 0001211 0 1112457788887665541
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCC
Q 008676 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (557)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL----~~~p~llllDEP 221 (557)
.. .....+.++++++. .+..++. ++.||+|||||++||+++ +.+|++++||||
T Consensus 84 --------------~~-~~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PL-CVLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cC-CHHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 01 11123456677765 4445554 457999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
|+|||+.++..+.+.|+++.++ +.|||+++|++ +++.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999996 56665 49999998754
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=4.3e-24 Score=224.55 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=158.9
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
++..+.++|+++.|+ ++..++++++|-++.++.++++||||+|||||||++.|.+.|. .|.|.-.-+
T Consensus 386 p~pvi~~~nv~F~y~----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYS----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCC----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------
Confidence 345688999999884 2337999999999999999999999999999999999999986 888754322
Q ss_pred ccEEEEccC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 008676 128 GTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (557)
Q Consensus 128 ~~~~yv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 205 (557)
..+++..|+ +.+.-..++-|++.=.. + .....+.+..+|.++||....++. ..++||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHH
Confidence 223444554 33444567777764321 1 122345678899999998543332 346799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE-EEEcCc
Q 008676 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGET 279 (557)
Q Consensus 206 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~ 279 (557)
|+.++..|.+|+|||||+|||..+...+-+.|.++ .-+||+++||- -.|.++++++.+..+|.+ .+.|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999999998776 34899999995 689999999999998776 455654
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.1e-23 Score=211.01 Aligned_cols=177 Identities=23% Similarity=0.253 Sum_probs=118.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-C--CCccc--EEEEccCCCC-CCCCCHHHHH
Q 008676 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------T-K--LSFGT--AAYVTQDDNL-IGTLTVRETI 149 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-------~-~--~~~~~--~~yv~Q~~~l-~~~lTV~e~l 149 (557)
.+++|+|||||||||||++|++.+.+. .|++..++.. . . ..... +.|..|++.. .-.-++++..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999988653 4666544321 0 0 00112 3344443221 0011111110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCCHHHHHHHHHHHHHHhC
Q 008676 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~ia~aL~~~ 212 (557)
. ..+... ....++.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 100 ~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 001111 11123345788888888633211 11111 2368999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 213 ----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 213 ----p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|+++|+||||+|||+..+..+.+.|++++++|.++|++||++ ++.+.+|++++|..
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999994 56789999999973
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.2e-23 Score=215.99 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=143.8
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
...|...|.+..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |+|..-..+...
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 3467888888888 57889999999999999999999999999999999985 333222211110
Q ss_pred cEEEEccC-CCCCCCCCHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 129 TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWS-EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+-.|++-. +.+-.+ +.++.+...-. .+... +..+..+++|..+|..+..-. ...+.||||-|-|+++|
T Consensus 141 ~g~~t~~~~~~l~~D-~~~~dfl~~e~-----~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 141 RGDDTEALQSVLESD-TERLDFLAEEK-----ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALA 210 (582)
T ss_pred eccchHHHhhhhhcc-HHHHHHHHhhh-----hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHH
Confidence 01233332 223333 33333322110 11111 233444558888888754322 13467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE-EEEcCcc
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETS 280 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 280 (557)
|||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++|| +..+-..|..|+.+++-++ .|.|.-+
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 9999999999999999999999999999998876 3799999999 7888899999999987666 3556543
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=211.28 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=158.1
Q ss_pred eEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCccc
Q 008676 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (557)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (557)
..+++++++..-+. .+..+.+|+|++|+.|+-+.|.||||||||+|+++|+|+-+.. +|.+..-... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999987643 1456889999999999999999999999999999999997654 8888653321 1255
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCCHHHHHHH
Q 008676 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV------IGNWHLRGISGGERRRV 203 (557)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv 203 (557)
+-|+||.|.+--. |.||-+.|...--.+ ..+....+++.+.|+.++|.|..+.. +--..-..||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999987666 999999886322111 11122235567778888776654322 21123356999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
+.||.+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|..+ ..+.=|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999999998887764 899999999964 5777788888874
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.87 E-value=2.3e-21 Score=181.80 Aligned_cols=211 Identities=22% Similarity=0.254 Sum_probs=159.9
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~--- 125 (557)
...+++.++.|.|+. .-+++-|+|++++.|..+.++|.||||||||||+|+|-.--. .|.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCcccccc
Confidence 346999999999963 347999999999999999999999999999999999975433 5899999975311
Q ss_pred --CcccEEEEccC----------CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008676 126 --SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (557)
Q Consensus 126 --~~~~~~yv~Q~----------~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (557)
......|+.-+ -.+-..+++.+.| |+.. .... +|-+++++.+.++-.. +.+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W-------RmH 146 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW-------RMH 146 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-------EEe
Confidence 11223443221 1223356665544 4321 1111 3345566666664221 335
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCe
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 272 (557)
.+|-|||+||.|++.|++--++|+|||-|-.||..++..+++.+++-.+ .|.||+..||.- +-+.....+++.+++|+
T Consensus 147 kvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 147 KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGK 225 (291)
T ss_pred eccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCe
Confidence 6999999999999999999999999999999999999999999999876 699999999995 56788999999999999
Q ss_pred EEEEcCcchHHH
Q 008676 273 TVYFGETSAAFE 284 (557)
Q Consensus 273 iv~~G~~~~~~~ 284 (557)
++-.-+.++..+
T Consensus 226 l~~~l~~~~i~e 237 (291)
T KOG2355|consen 226 LVDNLKYQKIKE 237 (291)
T ss_pred eeeccccchhhh
Confidence 987555554444
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1e-21 Score=201.09 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=150.7
Q ss_pred ceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcc
Q 008676 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~ 128 (557)
+..|-++|+++.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+..-| .+-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 44688999999884 4678999999999999999999999999999999999999996 6765433 234
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 008676 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 129 ~~~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
+||+..|.. .+-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 588888863 45556677777754322 222 2355678889999888885 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
.--+..|++|||||||++||..+...+.+.|+++ .-.||+++||.. .+.+.--.+.|+.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999998876 347999999953 34443344555544
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.5e-21 Score=187.63 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=68.8
Q ss_pred ccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCchHHHhcCC-
Q 008676 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D- 263 (557)
.+.+||||||||+.+++++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+. .++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence 4567999999998877554 4799999999999999999999999999999776 5 5899999995 35667776
Q ss_pred -eEEEeeCCe
Q 008676 264 -RLYLLSGGK 272 (557)
Q Consensus 264 -~v~~L~~G~ 272 (557)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.7e-21 Score=188.99 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=109.9
Q ss_pred eeceeEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCC
Q 008676 72 LEGLTGYAEPG-TLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (557)
Q Consensus 72 L~~vs~~i~~G-e~~~ilG~sGaGKSTLl~~L~--------g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (557)
.-++|+++.+| ++++|.||||||||||||+|+ |...|. . ....++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~------------~~~~~~~~~~~~~~--- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---A------------EGSSLPVFENIFAD--- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---c------------ccccCcCccEEEEe---
Confidence 45899999999 589999999999999999998 332221 0 00123343333111
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 008676 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (557)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 222 (557)
++..+..+. ..+.+|+||||++.|+++ +.+|+++++|||+
T Consensus 79 ----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 111111111 223599999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEc
Q 008676 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (557)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 277 (557)
+|||+..+..+. ..++.+.+.|.++|++||+ .++.+++|++..|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 4688887778999999998 3678999999999999998774
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-20 Score=197.69 Aligned_cols=198 Identities=23% Similarity=0.269 Sum_probs=156.3
Q ss_pred ceEEEEEeEEEEEEccCcccc-cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 008676 49 SARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (557)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~ 127 (557)
+-.+++.++++.+. ... +++.+++..++.-+-.+++|+||+||||++|++.|-..|. .|-+.+.+ +
T Consensus 360 ~p~l~i~~V~f~y~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------r 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------R 426 (582)
T ss_pred CCeeEEEeeeccCC----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------c
Confidence 44689999998774 233 7999999999999999999999999999999999988774 78776543 3
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHH
Q 008676 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIA 206 (557)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia 206 (557)
.+++|-.|...=+-.+.|.+-- +..+.+ | +.++ +.+++.+..+||+.- +.. ...+||||||-||++|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFA 494 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHH
Confidence 5688999975433344554433 333332 2 2233 346677888999742 222 2457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEE
Q 008676 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (557)
Q Consensus 207 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 275 (557)
.....+|.+|+|||||+.||..+-..+.+.|+.+ +-.||++||+ .+.+...|+.+.+.++|++.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998887 3479999999 578999999999999999863
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=8.1e-21 Score=196.22 Aligned_cols=168 Identities=29% Similarity=0.445 Sum_probs=130.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------------CC-------CCc----ccEEEEc
Q 008676 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------------TK-------LSF----GTAAYVT 134 (557)
Q Consensus 79 i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-------------~~-------~~~----~~~~yv~ 134 (557)
.++|++++|+|+||-||||-+|+|+|.+.|+ =|+ .++.+ .. ... .+.-||.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN---LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 5789999999999999999999999999886 232 12211 00 000 1112333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 008676 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 214 (557)
--|..+.. ||+|-|.-. +.+-..+++++.++|++..|+.+ ++|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 33344444 777766422 11235788999999999988866 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 215 llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
++++|||||-||...+....+.++++++.+++||++-||. .-+.-++|-|.++.+
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999998899999999995 456667898888874
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=8.7e-20 Score=173.64 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 195 LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 35678999999974
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.81 E-value=7e-20 Score=191.76 Aligned_cols=192 Identities=23% Similarity=0.316 Sum_probs=140.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (557)
.|.++|+-+..+ ....+...+||.+++|--+.|.||||||||+|.++|+|+-+-. .|... .....++
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~------~P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLS------IPRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeee------cCCCcce
Confidence 478888876553 3456889999999999999999999999999999999997642 44432 2233568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCCHHHHHHH
Q 008676 131 AYVTQDDNLIGTLTVRETISYSAR---LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (557)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSgGerqRv 203 (557)
-|+||.|.+-.+ |.||-+-+.-. ++ .++.++ +....+|+.+.|++....-.|= ....-||||||||+
T Consensus 548 FYIPQRPYms~g-tlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 548 FYIPQRPYMSGG-TLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred EeccCCCccCcC-cccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 999999987643 77877655311 11 012222 3355667777776654443331 12235999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
++||.+.++|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+ ..++-.+++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 999999999999999999999999999988887765 4899999999986 355434333
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=7e-19 Score=211.05 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEE
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFL 218 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llll 218 (557)
.|||.|.+.|.... .+-.+.-+.|..+||... ..|. ....|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl---~LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYL---PLGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCee---eCCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 46777777765221 122445678888999643 2232 3457999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| ++|+|++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999995 577889999999 4689999999998764
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=6.6e-19 Score=193.01 Aligned_cols=128 Identities=31% Similarity=0.448 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llll 218 (557)
.|||.|...|.... + .-.+.-+.|..+||.-. .+|. ....|||||.|||-+|.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 46777777776432 1 12344567778898632 2342 44579999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008676 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 219 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
||||+||-.....++++.|.+|.++|.|||++-|+. ++.+.+|.|+-| .+|++++.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999995 688999999999 4689999999999865
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.3e-19 Score=175.62 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=106.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.+.... .+++|.+.+|+.+|+.||
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a~----~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCAS----SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEecC----ccCcccceEEEeccchhc
Confidence 45788887765 79999999999999999999988542 11234332211 366777789999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 008676 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 228 (557)
+.++... ...+ .+++.++++.+++ .+|+++++|||++|+|+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9775321 1222 2456777766542 699999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhc--CCeEEEe
Q 008676 229 AAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL 268 (557)
Q Consensus 229 ~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 268 (557)
.+..+. ..++.+.+.|.|+|++||++ +.+... .++|..+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 998775 47888877899999999996 444443 3444443
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=1.1e-19 Score=179.08 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=115.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE-EEccCCCCCCCCCHH
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~ 146 (557)
.+.+.+|++++..+|++++|.||||+|||||++.++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999997210 011223 5555432211
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 008676 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDEP--- 221 (557)
.++++++.+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344455665332 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcC
Q 008676 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (557)
|++||+...... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3355544 58999999996 57899999999999999987764
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=9.3e-19 Score=179.06 Aligned_cols=185 Identities=26% Similarity=0.348 Sum_probs=138.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEeCCCCcccEEEEccCC-CCCC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDD-NLIG 141 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~-----~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~-~l~~ 141 (557)
...+|+|||++++||++++|+|+|||||||||++|.|.... ..+.+|.|.+--.. ..+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 35799999999999999999999999999999999987421 11247777653211 224555542 2234
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
.-|+.|.+.- .... .....++|.+.||.+..- -....+.||-|||.|..||.++...|.+++.||-
T Consensus 469 ~~tilehl~s-----~tGD------~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5567776531 1111 123567889999975321 1224568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhc-CCeEEEeeCCeE
Q 008676 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKT 273 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~i 273 (557)
.+.||+.++..+.+-|.++++ .|.|++++||+| +.+..+ =|+++++.=|.+
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeecccc
Confidence 999999999999999999987 599999999997 455555 588888765554
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=5.8e-19 Score=165.49 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+||+||+||+++|++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|++||++ +..+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 389999999999999997 7899999999999999999999999998866689999999995 4567899999996
Q ss_pred C
Q 008676 270 G 270 (557)
Q Consensus 270 ~ 270 (557)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.4e-18 Score=171.99 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.|||||+||+++|++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 789999999963 568999999998
Q ss_pred CCe
Q 008676 270 GGK 272 (557)
Q Consensus 270 ~G~ 272 (557)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=8.7e-18 Score=194.02 Aligned_cols=136 Identities=25% Similarity=0.387 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHhhccCCCCC-C-----HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 008676 140 IGTLTVRETISYSARLRLPDKM-P-----WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~-~-----~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 212 (557)
+..+||.|.+.|...+..+... . ..+..++++ .++.+||.+. .|+.+ ..|||||+|||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 4568999999996544322100 0 013344554 6888899765 56654 46999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008676 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 213 p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
| ++|+|||||+|||+..+..+.+.|++++++|.|||+++|++ +++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999988899999999996 455 469999999 999999999988764
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.5e-17 Score=191.77 Aligned_cols=135 Identities=27% Similarity=0.355 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 008676 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 213 (557)
..|||.|.+.|...+........ .+..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999998866532210000 1122222 34677788654 4553 4579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHH
Q 008676 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (557)
Q Consensus 214 --~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (557)
++|||||||+|||+.+...+.+.|++++++|.|||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999995 455 589999999 899999999988764
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=2.9e-18 Score=166.56 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=104.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHh
Q 008676 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA 153 (557)
Q Consensus 74 ~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~ 153 (557)
..++++.+|++++|+|||||||||||++|++..-.. ..|... ......++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~~~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------PAESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------cccccccCCcCEE---EEEecCccc-----
Confidence 345555689999999999999999999999542110 122110 0011223332221 111111111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 008676 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (557)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 233 (557)
.+. ..+.++++++| +..+.+++.+|+++++||||+|+|+.....+
T Consensus 85 -----------------------------i~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 011 11235666655 6666788899999999999999999998887
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 234 ~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.. +++.+.+.+.++|++||++ ++.+.+|++..++.|++...++..+
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 65 5677777789999999984 5678899999999999988876544
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=8.4e-17 Score=163.29 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC-
Q 008676 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 262 (557)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchhc
Confidence 448999999999999985 7999999999999999999999999997752 355555553 4566766
Q ss_pred --CeEEEeeCCeE
Q 008676 263 --DRLYLLSGGKT 273 (557)
Q Consensus 263 --D~v~~L~~G~i 273 (557)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=9.9e-18 Score=172.08 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=150.8
Q ss_pred cceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCC
Q 008676 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTK 124 (557)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~---~~~~~~~G~I~~~G~~~~ 124 (557)
..+.|.++|.+.+. .++.++.|-|+.|-.|..++++||||-||||||+.|+.+- +| .=+|+++.+.+.
T Consensus 261 na~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvv 331 (807)
T KOG0066|consen 261 NAMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVV 331 (807)
T ss_pred hcccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeee
Confidence 34678888888776 4678999999999999999999999999999999999873 33 234555443210
Q ss_pred ------------CCcccEEEEccCC-----CCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 008676 125 ------------LSFGTAAYVTQDD-----NLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186 (557)
Q Consensus 125 ------------~~~~~~~yv~Q~~-----~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 186 (557)
...++...+-.++ .--...|+.|-+.-. ..++. +.....+.++.++|.-+|.+.-...
T Consensus 332 ad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~- 407 (807)
T KOG0066|consen 332 ADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE- 407 (807)
T ss_pred ecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc-
Confidence 0011111111111 011334666655432 22321 1122334667788888888653222
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 187 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.....+|||-|-||++||||...|-+|.|||||+.||-....-+-++|+.+. +|.++++||. ..+...|..|+
T Consensus 408 ---rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdII 480 (807)
T KOG0066|consen 408 ---RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDII 480 (807)
T ss_pred ---CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHh
Confidence 1334699999999999999999999999999999999999999999998885 6999999995 68899999999
Q ss_pred EeeCCeEEE-EcC
Q 008676 267 LLSGGKTVY-FGE 278 (557)
Q Consensus 267 ~L~~G~iv~-~G~ 278 (557)
.|++.++-| .|.
T Consensus 481 HLD~qkLhyYrGN 493 (807)
T KOG0066|consen 481 HLDNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhhhcch
Confidence 999888754 354
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=1e-16 Score=155.71 Aligned_cols=135 Identities=20% Similarity=0.265 Sum_probs=98.8
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccE-EEEccCCCCCCCCCHH
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-AYVTQDDNLIGTLTVR 146 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~-~yv~Q~~~l~~~lTV~ 146 (557)
++.+.+|+++++++|++++|+||||+||||+++++++..-- .++ .|| +..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------a~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------AQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------HHcCCCc---chhhcCccCh
Confidence 45689999999999999999999999999999999876311 111 133 3334556777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 008676 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (557)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 226 (557)
|++... ++..+..++ ..+.+|+|++|+ ..+.+++.+|+++++|||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 766322 122211122 224589999975 55567889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhCCCEEEEEeCCC
Q 008676 227 SAAAFFV-TQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 227 ~~~~~~i-~~~L~~l~~~g~tvi~~~H~~ 254 (557)
+.....+ ...++.+.+.|.++|++||+.
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 9876665 456777877899999999994
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.66 E-value=3.5e-16 Score=153.51 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=108.3
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+.+|++++.++ ++++|.||||||||||||.+++..-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999887 99999999999999999999875321 11 12222212245677754 5677777776
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH--HHHHHHHHHHHHHhCCCEEEEeCC---CC
Q 008676 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG--GERRRVSIALEILMRPRLLFLDEP---TS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~ia~aL~~~p~llllDEP---ts 223 (557)
+..+. |- .|.++++-+...+.+|+++++||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64321 11 222333333344579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
++|.... ....++.+.+. +.++|++||+. ++.+++|++..+++|++...+..+++.
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8887552 23445555555 89999999994 678899998888899988877666543
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=3.6e-15 Score=150.51 Aligned_cols=138 Identities=28% Similarity=0.320 Sum_probs=93.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------cccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 83 e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
.-++|+||||||||||+++|+|.+.++ +|+|.++|+++... .+.++++||.+ +.+.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999986 99999999875311 12356777754 3334444433100
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 236 (557)
..|+ .......+|+++++|||++ ...+..+
T Consensus 183 ---------------------------------------~~~~-----~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEGM-----MMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHHH-----HHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 0011 2223336999999999974 3334455
Q ss_pred HHHHHhCCCEEEEEeCCCchH-H-----------HhcCCeEEEeeCCeEEEEcCcchH
Q 008676 237 LRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 237 L~~l~~~g~tvi~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
++.+ +.|.++|+++|++..+ + ..+|||+++|++|+ ..|.++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5554 4699999999985321 2 26799999999887 55665543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.59 E-value=6.9e-15 Score=151.38 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=137.2
Q ss_pred ccccceeceeEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCC
Q 008676 67 ETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141 (557)
Q Consensus 67 ~~~~iL~~vs~~i~~G-----e~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~ 141 (557)
+.+.-+-+..+.|+.| |++..+|+||.||||++++++|+++|+ ..|+|-. -.++|=||...--.
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~ 415 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKR 415 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCccc
Confidence 3455667777777776 578999999999999999999999886 1333321 24678888755444
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 008676 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (557)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 221 (557)
.-|||+.+.-- .+ +.-...+.+.++++-+.+++..|..+ .+|||||.|||++|..|-..+++++.|||
T Consensus 416 ~~tvR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 416 EGTVRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred cchHHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 55999876432 11 01122356778888888888877755 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 222 TSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
.+-||++.+...-+.+++.- +.++|-.++.||.. -.--++||+++..
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 99999999999999998864 46799999999953 3445789988764
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=4.8e-15 Score=142.04 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+++
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 458888776433332 23499999999999999999887765 556777764 89999999995 57888876444444
Q ss_pred CeEEE
Q 008676 271 GKTVY 275 (557)
Q Consensus 271 G~iv~ 275 (557)
+++..
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 54443
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.52 E-value=3.7e-13 Score=142.05 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC-
Q 008676 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 262 (557)
..+|.||+|++.||+.|+ .+|+++++|||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhhhc
Confidence 468999999999999886 799999999999999999999999988764 45789999985 3455543
Q ss_pred -CeEEEeeCCeE
Q 008676 263 -DRLYLLSGGKT 273 (557)
Q Consensus 263 -D~v~~L~~G~i 273 (557)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
No 420
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.52 E-value=1.3e-15 Score=146.81 Aligned_cols=170 Identities=23% Similarity=0.329 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhh
Q 008676 384 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM 461 (557)
Q Consensus 384 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~r~g~lff~~~~~~~~~~~~~-~~~~~er 461 (557)
+|++.+++|+++..+|||.+. ...++..++.++++|.+|.+++++.++. ++.+++++.+....+...... .....||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988544444 777777777766665444433 6778899
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008676 462 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 541 (557)
Q Consensus 462 ~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~ 541 (557)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++...+..+++.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 77888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 008676 542 FLMGIITGAGIQVSV 556 (557)
Q Consensus 542 ~~~a~~~~~~~~~~~ 556 (557)
...+..+.+.+..++
T Consensus 158 ~~~~~~~~~~~~~~~ 172 (210)
T PF01061_consen 158 FRDASAISSLILLLL 172 (210)
T ss_pred hhhhhhhhhhccccc
Confidence 999999888776653
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.48 E-value=3.8e-14 Score=139.18 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008676 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 168 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 344555655555332 59999999999997664 46789999999999999999999999999864
Q ss_pred CCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 244 g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999994 6889999888764
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=6.9e-13 Score=129.93 Aligned_cols=128 Identities=25% Similarity=0.235 Sum_probs=86.1
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCC-CCCHHH
Q 008676 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG-TLTVRE 147 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~-~lTV~e 147 (557)
+=+|+++.=..+.+++|.||||+|||||||.++. .+.. .|..... ....++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a------~~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPA------DSATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEc------CCcEEeeeeeeeeeeCCccChhh
Confidence 4445554322238999999999999999999983 2321 4544322 1134677777532111 111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008676 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++| .-|-||++++++++.+|+++|+|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 35679999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 008676 226 DSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (557)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~ 254 (557)
|+.....+ ...++++.+. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99865555 5688888764 35899999995
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.44 E-value=1.2e-13 Score=157.95 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=90.4
Q ss_pred eeEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcccEEEEccCCC-CCCCCCHHHHHHH
Q 008676 75 LTGYAEPG-TLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIGTLTVRETISY 151 (557)
Q Consensus 75 vs~~i~~G-e~~~ilG~sGaGKSTLl~~L~g~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~-l~~~lTV~e~l~~ 151 (557)
+|+.+.++ ++++|.||||+|||||||+|+|.. .+. .| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCcccccc---chhhee-
Confidence 78888887 999999999999999999999872 221 22 13333321 111 111110
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
.. +... + .+. . ..+.+|+|++++..|++.+ .+|+++|+|||++|+|+....
T Consensus 371 -~~------i~~~---~---si~----------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---Q---SIE----------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---h---HHh----------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0 000 0 2245999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhCCCEEEEEeCCC
Q 008676 232 FV-TQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 232 ~i-~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+ ..+|+.+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 99 577888888899999999995
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.43 E-value=2e-13 Score=118.00 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=59.3
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcccEEEEccCCCCCCCC
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~l 143 (557)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+... ..+..+|++|+ +|+.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 5889999987421 22446777777 5544
Q ss_pred CHHHHHHHH
Q 008676 144 TVRETISYS 152 (557)
Q Consensus 144 TV~e~l~~~ 152 (557)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=1.4e-12 Score=128.38 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=90.4
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~-~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
+.+.+|+++.+.+|++++|.||||+||||+++++++. +.+. .|....... -.++|..|- +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~a~~------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVPASS------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEEcCc------eEEeccceE---EEEecCcc
Confidence 5689999999999999999999999999999999984 3332 555432210 123333321 11111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008676 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 23444554444556789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCchHHHhcC
Q 008676 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 262 (557)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777765 5677777775 89999999995 344443
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.36 E-value=1.7e-12 Score=134.03 Aligned_cols=172 Identities=27% Similarity=0.336 Sum_probs=120.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEEC------CEeCCCCc--------c---cEEEEccCCCCC
Q 008676 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLN------GHKTKLSF--------G---TAAYVTQDDNLI 140 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~--~~G~I~~~------G~~~~~~~--------~---~~~yv~Q~~~l~ 140 (557)
.||++.+++|.||-||||-+++++|.++|+.. ..+-.+-+ |..+.... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999988620 01111100 00000000 0 001222211111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 008676 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (557)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 220 (557)
. .+|.+++.- ...++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.+++.+||
T Consensus 178 k-~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 133333321 1122345677888888888777654 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 221 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
|.+-||...+..-...++.+...++-||++.||. +-..-+.|-+.+|..
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 9999999999999999999988889999999995 456667888888874
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.3e-12 Score=127.94 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 008676 199 ERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (557)
Q Consensus 199 erqRv~ia~aL~~~p~llllDEPt-----sgLD~~~~~~i~~~L~~l~~ 242 (557)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.33 E-value=3.4e-12 Score=127.52 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=104.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CEe-CC--CC---cccEEEEccCCCCCCCCCHHHH
Q 008676 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GHK-TK--LS---FGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 77 ~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~--G~~-~~--~~---~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
+.+.+||.++|+||+|+|||||++.|.+..... .....+++- |++ .. .. ...+-.+.+-+. +..+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 457899999999999999999999999877542 011222221 211 00 00 011222222221 11111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcC------------CCccccccccCcccCCCCHHH--------HHHHHHHHH
Q 008676 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMG------------LQDCADTVIGNWHLRGISGGE--------RRRVSIALE 208 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~~~~vg~~~~~~LSgGe--------rqRv~ia~a 208 (557)
...... ..+.++... ..| +....++..+. ....+|||+ +||+++||+
T Consensus 85 ~~~~~~-----------~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~ 151 (249)
T cd01128 85 VQVAEM-----------VLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARN 151 (249)
T ss_pred HHHHHH-----------HHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcC
Confidence 110000 000011110 001 12233444443 445689999 999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeE
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 273 (557)
+..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 152 ~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 152 IEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9999999999 999999755543 44 5555546789999999963 4788999999999987
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.32 E-value=3.5e-12 Score=142.31 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+| .+...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 89999999996 345789999999
Q ss_pred eCCe
Q 008676 269 SGGK 272 (557)
Q Consensus 269 ~~G~ 272 (557)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9764
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.30 E-value=1.8e-11 Score=131.35 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=113.7
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C------C----CcccEEEEc
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~---~------~----~~~~~~yv~ 134 (557)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998876 89999976532 1 0 124578887
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC-HHHHHH-HHHHHHHHhC
Q 008676 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS-GGERRR-VSIALEILMR 212 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqR-v~ia~aL~~~ 212 (557)
+.+. ++.+-..-+. .--.+.|.+..-|- |..+- ..+++ --|-+| +++
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~rEisl------- 269 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLM---MDSVTRVAMAQREIGL------- 269 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEE---EeChHHHHHHHHHHHH-------
Confidence 6433 1211111000 00112223322232 11110 01121 111111 111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcch
Q 008676 213 PRLLFLDEP--TSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (557)
Q Consensus 213 p~llllDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (557)
.+.|| |+|+|+.....+.++++++.. +|. ||++.+||.. ..+||++..+.+|+++.+++..+
T Consensus 270 ----~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 ----AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ----hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 12454 679999999999999999974 575 9999999964 37899999999999999998653
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.29 E-value=2.4e-12 Score=147.63 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCC
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 271 (557)
+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||++ +.....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999988864 6777777889999999994 3344445554443 45
Q ss_pred eEEEE
Q 008676 272 KTVYF 276 (557)
Q Consensus 272 ~iv~~ 276 (557)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.28 E-value=3.1e-11 Score=119.68 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=92.8
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhcc
Q 008676 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (557)
Q Consensus 78 ~i~~Ge~~~ilG~sGaGKSTL-l~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (557)
-+++|++++|.|+|||||||| ++.+.+..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 379999999999999999999 68888765431 123455532 25556555543332
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHH
Q 008676 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (557)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgL----D~~ 228 (557)
.. .++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~~-----------~~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 YD-----------INKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred Cc-----------hHHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 11 1111111 10000010 1 136777655544444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEee
Q 008676 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (557)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 269 (557)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998888887776654310 1234456677665
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.28 E-value=1e-11 Score=137.68 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 193 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+| .+..++|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3579999999999999997 5899999999999999999999999999965 69999999997 356899999999
Q ss_pred eCCe
Q 008676 269 SGGK 272 (557)
Q Consensus 269 ~~G~ 272 (557)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 434
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.2e-11 Score=147.26 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh
Q 008676 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 260 (557)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+...|++|+++||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 467899999999999999986 7999999999999999999999999999988899999999996 67889
Q ss_pred cCCeEEEeeCC
Q 008676 261 LFDRLYLLSGG 271 (557)
Q Consensus 261 ~~D~v~~L~~G 271 (557)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.26 E-value=5e-11 Score=131.83 Aligned_cols=137 Identities=24% Similarity=0.379 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH------HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 008676 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVER------TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (557)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 212 (557)
+..|++.|.+.|...+.+... ...-.+..+.+ .|..+||.-. .++ ....|||||.||+-||..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R-----~a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSR-----SAGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccc-----cCCCcChhHHHHHHHHHHhccc
Confidence 456788898888876653221 11111112222 3444577542 222 3346999999999999999876
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe------eCCeEEEEcCcchHHH
Q 008676 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (557)
Q Consensus 213 p--~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (557)
= =+++||||+-||-+..-.++++.|++|++.|.|+|++.||+ +....+|+|+-| ++|+|+++|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 4 47899999999999999999999999999999999999994 688999999998 5799999999999874
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=8.7e-12 Score=139.34 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.5
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 008676 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~----------~~p~llllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 259 (557)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++ +..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34679999999999999887 599999999998 789999999999999998 589999999996 356
Q ss_pred hcCCeEEEeeC-CeE
Q 008676 260 ELFDRLYLLSG-GKT 273 (557)
Q Consensus 260 ~~~D~v~~L~~-G~i 273 (557)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 543
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.25 E-value=7e-11 Score=112.61 Aligned_cols=146 Identities=24% Similarity=0.220 Sum_probs=96.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 008676 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (557)
++.|.||+|+|||||.--++-.... . | +.+.|+.=+ .|..+.+.....+. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~----~------g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA----R------G-------EPGLYVTLE------ESPEELIENAESLG----WDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH----C------C-------CcEEEEECC------CCHHHHHHHHHHcC----CCh
Confidence 3679999999999988765421110 1 1 224455421 25555554433321 111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHH
Q 008676 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVT 234 (557)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD---~~~~~~i~ 234 (557)
++ +...|+....+. .+..+|+|++| +.........+|+++++|||++.+| ......+.
T Consensus 54 -------~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~ 120 (187)
T cd01124 54 -------ER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIR 120 (187)
T ss_pred -------HH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHH
Confidence 11 122343333332 34568999998 4455555667999999999999999 88888889
Q ss_pred HHHHHHHhCCCEEEEEeCCCch--------HHHhcCCeEEEee
Q 008676 235 QTLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (557)
Q Consensus 235 ~~L~~l~~~g~tvi~~~H~~~~--------~i~~~~D~v~~L~ 269 (557)
+.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 121 ~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 121 RLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9999998889999999998542 2678899999887
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.22 E-value=3.3e-11 Score=118.19 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008676 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 192 ~~~LSgGerqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 3457999999999999988776 89999999999999999999999988876678999999997
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=7.2e-11 Score=115.86 Aligned_cols=134 Identities=21% Similarity=0.201 Sum_probs=88.6
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
.+.+-+|+++..++|++++|.||||+||||+++.+++..-.. ..| .........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999998753210 011 111000011111 122222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 008676 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 225 (557)
++.. ++| ..|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445554444555789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 008676 226 DSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (557)
Q Consensus 226 D~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~ 254 (557)
|+.....+... ++.+.+. +.++|++||++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 99999988888 7778765 89999999995
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.17 E-value=1.8e-11 Score=116.03 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeC
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 270 (557)
..+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 35999999999999999999999999995 44444 345666666666789999999983 45678999999999
Q ss_pred CeEEEE
Q 008676 271 GKTVYF 276 (557)
Q Consensus 271 G~iv~~ 276 (557)
|++++.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=1.6e-10 Score=135.92 Aligned_cols=77 Identities=31% Similarity=0.327 Sum_probs=68.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008676 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 191 ~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..++..+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 45679999999 55566678899999999999999999999999999999877788999999995 46789999
Q ss_pred EEEee
Q 008676 265 LYLLS 269 (557)
Q Consensus 265 v~~L~ 269 (557)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
No 442
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=101.46 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008676 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 193 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
...|.||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++.|.-+|+.||.|.
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 4579999654444333 4567899999999999999999999999999999999999999983
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.08 E-value=3.7e-10 Score=134.32 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=70.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 008676 191 HLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~--------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
.++.|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||+++||.. .....+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 567899999999999999996 8999999999999999999999999999988899999999984 4555666
Q ss_pred CeEEEeeC
Q 008676 263 DRLYLLSG 270 (557)
Q Consensus 263 D~v~~L~~ 270 (557)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777664
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.07 E-value=4.6e-10 Score=119.76 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=116.7
Q ss_pred EEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEE
Q 008676 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (557)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (557)
++-++++..+. .+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC---------
Confidence 45555555442 235688885 999999999999999999999999999998775 6766665542
Q ss_pred EEccCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-
Q 008676 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (557)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~- 210 (557)
..+|+|.+.... ..-++.+. ..+ ....+-|.|+|+|+..+.+.+
T Consensus 194 ----------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 194 ----------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred ----------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 136666654221 11122110 111 123568999999999998888
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCc
Q 008676 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (557)
Q Consensus 211 ------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (557)
.++-++++|+||+..|+. .++...+.+.-..|.+..+.+|. +.+. +|.-...+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~---ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLL---ERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHH---HHhccCCCcceEEEEEE
Confidence 789999999999999996 55555666655458888888885 2344 44444578888666543
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.07 E-value=2.2e-09 Score=124.51 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=60.2
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH---------hcCCeEEEeeCCeEEEEcC
Q 008676 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGE 278 (557)
Q Consensus 210 ~~~p~llllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 278 (557)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++. +.||++++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999974 443 6899999999999876664
No 446
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=4.7e-10 Score=136.49 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred cccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 008676 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (557)
Q Consensus 184 ~~~vg~~~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H 252 (557)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 33579999999 99999999999999999999999999999999999988732 4789999999
Q ss_pred CCchHHHhcC
Q 008676 253 QPSSEVFELF 262 (557)
Q Consensus 253 ~~~~~i~~~~ 262 (557)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 95 5676665
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.06 E-value=3.7e-10 Score=116.84 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=94.6
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-cccEEEEccCCCCCCCCCHHHHHHHH
Q 008676 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (557)
Q Consensus 75 vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~-~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 152 (557)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+.... .... ...+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 55678899999999999999999999999998775 5666664321 0100 011111111000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 008676 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (557)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 232 (557)
. + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 --------------------------------~--~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 --------------------------------Q--G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred --------------------------------C--C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 000111 1234556778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchHH
Q 008676 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (557)
Q Consensus 233 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (557)
..+.++.+...+.+++.++|..+ +....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777777543346799999964 56779999999999988888777654
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.03 E-value=6.2e-10 Score=102.59 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 008676 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (557)
Q Consensus 195 LSgGerqRv~ia~aL~~~p~llllDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 256 (557)
.+.++.++...+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888889999999999999994 555555666666666665579999999998754
No 449
>PRK01156 chromosome segregation protein; Provisional
Probab=98.99 E-value=1.2e-09 Score=128.69 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=66.6
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEeCCCchHHHhc
Q 008676 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 261 (557)
Q Consensus 191 ~~~~LSgGerqRv~i------a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~ 261 (557)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++... .. | .++|++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 466899999999975 589999999999999999999999999999998644 33 3 4899999996 35689
Q ss_pred CCeEEEee
Q 008676 262 FDRLYLLS 269 (557)
Q Consensus 262 ~D~v~~L~ 269 (557)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.97 E-value=7.3e-09 Score=102.86 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=98.8
Q ss_pred cceece-eEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHH
Q 008676 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (557)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~g-~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 147 (557)
.-|+.+ .+=+++|.++.|.|++|+|||||...++- ... +| +.+.|+..+. +..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g-------------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----QG-------------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----CC-------------CEEEEEEcCC------CHHH
Confidence 345554 55699999999999999999999998852 111 11 2355665532 3333
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC-
Q 008676 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG- 224 (557)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~--~p~llllDEPtsg- 224 (557)
.+.-...+. +.. ++.+. .|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 333222221 110 11100 011111111111 112356788999999999997 9999999999965
Q ss_pred --CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEee
Q 008676 225 --LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (557)
Q Consensus 225 --LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 269 (557)
.|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 44555556666677777789999999998642 1456667777776
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=2e-09 Score=129.98 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.0
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 56689999999999999985 57799999999999999999999999999865 478999999964 457899998
Q ss_pred Eee
Q 008676 267 LLS 269 (557)
Q Consensus 267 ~L~ 269 (557)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.86 E-value=9.7e-09 Score=111.22 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=95.9
Q ss_pred cceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHH
Q 008676 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
.++++.+..+++|++++++||||+||||++..|++.+... .|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999876432 231 2578888875 346899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 008676 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTS 223 (557)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~ia~aL~~~p-----~llllDEPts 223 (557)
.+.+.... ++........+......++.+.....|. ..+.+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98776542 1111111223334445667665444443 22222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 008676 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 253 (557)
+ ..+.+.++.+...+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 34555556665556665556653
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.84 E-value=1.5e-08 Score=98.14 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEee
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 269 (557)
+++++|..+|+++++|||. |..+...++ +.+..|..++.++|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 655433332 34567999999999964 456789987764
No 454
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.84 E-value=2.3e-08 Score=99.71 Aligned_cols=135 Identities=29% Similarity=0.434 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008676 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 82 Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
|.+..|+||+|+|||||.-.++--.. +|.=++.+ ... .....+.|+.=++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed~---------------------- 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAEDP---------------------- 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCCC----------------------
Confidence 67899999999999999988863221 22211111 111 11234556553321
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 008676 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------aL~~~p~llllDEPts- 223 (557)
..+..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 53 --~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 53 --REEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred --HHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 2223344555555555443333221 1244555554433 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 008676 224 -----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~ 254 (557)
.+|+.....+++.|+++++ .|.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 4799999999999999976 589999999985
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=2.8e-09 Score=113.82 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=45.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCC
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTK 124 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G-~I~~~G~~~~ 124 (557)
+.+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECC
Confidence 46899999999999999999999999999999 6777665 56 8999998753
No 456
>PRK02224 chromosome segregation protein; Provisional
Probab=98.82 E-value=8.5e-09 Score=121.40 Aligned_cols=78 Identities=29% Similarity=0.359 Sum_probs=67.1
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCchHH
Q 008676 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (557)
Q Consensus 192 ~~~LSgGerq------Rv~ia~aL~~~-----p-~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 258 (557)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998864 3 67999999999999999999999999976664 899999996 34
Q ss_pred HhcCCeEEEeeCC
Q 008676 259 FELFDRLYLLSGG 271 (557)
Q Consensus 259 ~~~~D~v~~L~~G 271 (557)
...+|+++.+...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5689999999743
No 457
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.80 E-value=8.5e-09 Score=124.63 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=68.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 008676 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 266 (557)
.+..||||||++++||++++. .|++++||||+++||+.+...+.++|++++. +..+|++||++ .....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 47899999996 4678999999
Q ss_pred EeeC
Q 008676 267 LLSG 270 (557)
Q Consensus 267 ~L~~ 270 (557)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.70 E-value=4.9e-07 Score=80.04 Aligned_cols=118 Identities=32% Similarity=0.439 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhccCCCC
Q 008676 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (557)
++..+.|.||+|+||||+++.|+....... .+-+.++....... . .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~---------------~-~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE---------------V-LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc---------------C-HHHHH------------
Confidence 367899999999999999999998876531 13444443321100 0 00000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 008676 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (557)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~----- 235 (557)
..... . ......+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -------------~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIVG----G-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhhh----c-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00000 0 112367788888888888888899999999999999998887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 008676 236 -TLRCLSRDGRTVIASIH 252 (557)
Q Consensus 236 -~L~~l~~~g~tvi~~~H 252 (557)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223345788888888
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=3.1e-08 Score=105.93 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=69.3
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCcccEEEEccC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~-----------~~~~~~~yv~Q~ 136 (557)
+..+|+++ +.+.+||.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998775322355555554321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHhhc
Q 008676 137 DNLIGTLTVRETISYSARL 155 (557)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~ 155 (557)
...+..+++.+++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999877654
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=1.8e-08 Score=110.70 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=97.1
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CcccEEEEccCCCCCCCC
Q 008676 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L--~g~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~l 143 (557)
-|+.+ .+=+++|..+.|.|++|||||||..-. .|....+ +.-+++....... ..+..||-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 46664 567899999999999999999999876 3444322 3334444332100 0112233222110000
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCC
Q 008676 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEP 221 (557)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~aL~~~p~llllDEP 221 (557)
++.+ .. ..+. .....+++.+++.+..+... +.+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~---~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD---ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee---cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 00111233344444444432 45899999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-------H-HhcCCeEEEee
Q 008676 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (557)
Q Consensus 222 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 269 (557)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999985320 2 55789999987
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.62 E-value=4.1e-07 Score=98.03 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=108.0
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------------C-cccEEEEc
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------------S-FGTAAYVT 134 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~------------~-~~~~~yv~ 134 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+..+. . .+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 999999999999999999999999999998775 6766666653110 0 11123333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHHhCC
Q 008676 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (557)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~aL~~~p 213 (557)
+.+. ++.+-.. + .... -.+.+.+...|- |..+ ...+++- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~~--~---------~~~a-~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-----Eis--- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLK--G---------AYVA-TAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-----EIG--- 273 (440)
T ss_pred CCCC-----CHHHHHH--H---------HHHH-HHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-----HHH---
Confidence 3221 1111110 0 0011 112233333342 2221 1112221 12222 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCchHHHhcCCeEEEeeCCeEEEEcCcchH
Q 008676 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (557)
Q Consensus 214 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (557)
+.+.|| +.|+|+.....+.+++.+....+. ||++..||.. ..++|++.-+.+|+++.+...++.
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 234675 459999999999999999877667 8888889853 457899999999999998876543
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.58 E-value=1.5e-06 Score=101.69 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.7
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh--cCCeEEEeeCCeEE
Q 008676 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (557)
Q Consensus 205 ia~aL~~~p~llllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv 274 (557)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999888999999999974 4543 23434333444444
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.1e-07 Score=100.59 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008676 194 GISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~---------~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |.+|++++|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence 589999999999999999 99999999999999999999999999754 67999999986
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.54 E-value=2.4e-08 Score=98.67 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.5
Q ss_pred ceece-eEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008676 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (557)
Q Consensus 71 iL~~v-s~~i~~Ge~~~ilG~sGaGKSTLl~~L~ 103 (557)
-|+.+ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4678999999999999999999988655
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.53 E-value=2.2e-07 Score=89.02 Aligned_cols=81 Identities=23% Similarity=0.234 Sum_probs=59.4
Q ss_pred ceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-CcccEEEEccCC--CCCCCCCHH
Q 008676 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-SFGTAAYVTQDD--NLIGTLTVR 146 (557)
Q Consensus 71 iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~-~~-~~~~~~yv~Q~~--~l~~~lTV~ 146 (557)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+... .. ....++++.|.+ ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455668899999999999999999999999999875 79999987532 11 123456665543 345667888
Q ss_pred HHHHHHhh
Q 008676 147 ETISYSAR 154 (557)
Q Consensus 147 e~l~~~~~ 154 (557)
+.+....+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876654
No 466
>PRK14079 recF recombination protein F; Provisional
Probab=98.52 E-value=1.9e-07 Score=98.25 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 008676 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 264 (557)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCC-----CCCCce
Confidence 47999999999999999 899999999999999999999999888653 2344444443 357999
Q ss_pred EEEeeCCeEE
Q 008676 265 LYLLSGGKTV 274 (557)
Q Consensus 265 v~~L~~G~iv 274 (557)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998874
No 467
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.51 E-value=3.4e-07 Score=108.01 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=69.3
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 008676 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (557)
Q Consensus 191 ~~~~LSgGerqRv~ia~aL~------~~--p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 262 (557)
.+..|||||+=.++||.+|+ .+ -+++||||||..||+.+...++++|..+...+.+|++|||++ +..+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999887777665 35 699999999999999999999999999988899999999994 678899
Q ss_pred CeEEEeeC
Q 008676 263 DRLYLLSG 270 (557)
Q Consensus 263 D~v~~L~~ 270 (557)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.51 E-value=1.1e-07 Score=91.99 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhc-cCCCCCC
Q 008676 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL-RLPDKMP 162 (557)
Q Consensus 84 ~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~ 162 (557)
+++|.||||||||||.+.|++.+. .|.+ .++++|+.. ..++..+........ ..+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 579999999999999999999862 2222 333443322 122333322211110 1111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 008676 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (557)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 227 (557)
.+...+.+..+...+..+.+ ....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334555555544333322 23578888776554 5688999999999998876
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.46 E-value=1.2e-06 Score=92.07 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEe
Q 008676 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (557)
Q Consensus 204 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 268 (557)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567999999999853 45667777655
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=3.8e-07 Score=97.81 Aligned_cols=85 Identities=24% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCcceEEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---e
Q 008676 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---K 122 (557)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~ 122 (557)
..++..++.++++..+. .+..+++.++ .+.+||.++|+||||+|||||+++|++..+++ .|.|.+.|+ +
T Consensus 134 ~~~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergre 205 (450)
T PRK06002 134 ATAPPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGRE 205 (450)
T ss_pred CCCCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCcc
Confidence 34455688889988874 2467888886 89999999999999999999999999998875 799988653 3
Q ss_pred CC---------CCcccEEEEccCCC
Q 008676 123 TK---------LSFGTAAYVTQDDN 138 (557)
Q Consensus 123 ~~---------~~~~~~~yv~Q~~~ 138 (557)
.. ...+.+++|+|.+.
T Consensus 206 v~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 206 VREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 21 11256899999764
No 471
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.42 E-value=4.7e-07 Score=105.55 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=86.1
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHH
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 148 (557)
..|=+|+++. +.+.++.|.|||++||||+||.++-..--. .-| +|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceE---ecccCe
Confidence 4467788887 677899999999999999999986431100 011 234432211 111111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 008676 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEP---TS 223 (557)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~--~p~llllDEP---ts 223 (557)
+..++|-. |. ..++.|-=+.....++..|-. +++++|+||| |+
T Consensus 653 ------------------------I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 ------------------------IFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ------------------------eeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111211 11 113567666666666666654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCe
Q 008676 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (557)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 264 (557)
.+|..+ ..+..++.+.+. |.+++++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888443 455566666665 5899999999 367777775
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.40 E-value=5.2e-07 Score=95.07 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=63.9
Q ss_pred chhhhHHHHHHHhhcCCCCCccccCCCCCchhhhHhhhcccccCCCcceEEEEEeEEEEEEccCccccccee--------
Q 008676 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~-------- 73 (557)
++.++++|+++++..+++-.. .| ....-.++|+||++.|+ .++.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~---------------e~~~~ri~Fe~LTf~YP----~er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DP---------------EKAKNRVLFENLTPLYP----NERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------Cc---------------cccCCCeEEEEeeecCC----CccceeecCccccce
Confidence 456789999999998887322 11 01122599999999985 2346786
Q ss_pred ---ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008676 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 74 ---~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
|+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999988754
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=1.5e-06 Score=105.16 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=90.0
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHH
Q 008676 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
..-+++..+.+++++|+|++|+|||||++++.+..... ..|.+++++........ .+-.++... .+...
T Consensus 197 ~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~ 265 (1153)
T PLN03210 197 SSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL 265 (1153)
T ss_pred HHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH
Confidence 33456777889999999999999999999998766442 37888887632111000 010110000 00000
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 008676 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (557)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 231 (557)
...++.+.++++..++. + .. .++.|+| |..++-+++||+- |..
T Consensus 266 ------------~l~~~~l~~il~~~~~~------~-----~~-~~~~~~~------L~~krvLLVLDdv----~~~--- 308 (1153)
T PLN03210 266 ------------HLQRAFLSEILDKKDIK------I-----YH-LGAMEER------LKHRKVLIFIDDL----DDQ--- 308 (1153)
T ss_pred ------------HHHHHHHHHHhCCCCcc------c-----CC-HHHHHHH------HhCCeEEEEEeCC----CCH---
Confidence 00112233343333321 1 11 2566666 3356667888983 433
Q ss_pred HHHHHHHHHH---hCCCEEEEEeCCCchHHHhc-CCeEEEeeCCeEEEEcCcchHHHHHHhCCC
Q 008676 232 FVTQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (557)
Q Consensus 232 ~i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 291 (557)
..++.|.... ..|.+||+|||+. ..+... +|+++.+.. =+.+++.+.|....+
T Consensus 309 ~~l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 DVLDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 3344444432 3588999999995 333333 576665531 134567777766544
No 474
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.30 E-value=9.4e-07 Score=107.73 Aligned_cols=61 Identities=30% Similarity=0.398 Sum_probs=53.4
Q ss_pred ccCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 008676 191 HLRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (557)
Q Consensus 191 ~~~~LSgGerqRv~----ia~a--------L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 254 (557)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 35689999999996 5645 45899999999999999999999999999888 68899999873
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=1.7e-05 Score=92.55 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008676 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 208 aL~~~p~llllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999888999999999974
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.20 E-value=9.4e-07 Score=84.03 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----cccEEEEccCCCCCCCCCHHHHHHH
Q 008676 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~ 151 (557)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46777653211 1124555665444444455555443
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.18 E-value=2e-06 Score=66.93 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=30.0
Q ss_pred eeceeEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008676 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (557)
Q Consensus 72 L~~vs~~i~~-Ge~~~ilG~sGaGKSTLl~~L~g~~~~ 108 (557)
.++.++++.+ |++++|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777775 569999999999999999999766544
No 478
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.16 E-value=5.8e-05 Score=76.43 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred ccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008676 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (557)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~ 105 (557)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888889999999999999999999999988754
No 479
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.14 E-value=0.00028 Score=70.84 Aligned_cols=166 Identities=10% Similarity=0.074 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------Chh-h--HHHHHHHHHHHHHHHHHHHHh
Q 008676 383 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT------GYN-S--ILARGSCASFVFGFVTFMSIG 452 (557)
Q Consensus 383 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~------~~~-~--~~~r~g~lff~~~~~~~~~~~ 452 (557)
+++++.+++|.++..+|||..+..-+++-++.-++.|.+|-.. +. +.. + .+--.|.+.+...+..+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3688999999999999999999999999999999999888442 11 000 0 111112222222111111 1
Q ss_pred hHHHHHHhh--HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 008676 453 GFPSFVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 530 (557)
Q Consensus 453 ~~~~~~~er--~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s 530 (557)
+. ....|| ..+.+=+... .++..+.+++++..+-..++..++...+.+. .|.+.+...++.....+++...+..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 112222 2333333333 3678899999999987777776665555443 36655544444344444556666779
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 008676 531 LMMAIASIVPNFLMGIITGAGIQ 553 (557)
Q Consensus 531 ~~~~i~~~~p~~~~a~~~~~~~~ 553 (557)
++++++.++++......+.+.++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~ 178 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVI 178 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999877666555443
No 480
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.12 E-value=7.3e-05 Score=79.25 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCchH
Q 008676 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL-----DSAAAFFV----------TQTLRCLSR-DGRTVIASIHQPSSE 257 (557)
Q Consensus 194 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvi~~~H~~~~~ 257 (557)
+=||-.-|=..|..||=..+++||+||=||+- |...+..+ ++.++.+.+ .|.+.|+++-- +.+
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999975 55555544 556677744 68888888765 678
Q ss_pred HHhcCCeEEEeeCCeE
Q 008676 258 VFELFDRLYLLSGGKT 273 (557)
Q Consensus 258 i~~~~D~v~~L~~G~i 273 (557)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999997654
No 481
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.12 E-value=6.5e-06 Score=88.52 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC--------CCcccEEEE---
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK--------LSFGTAAYV--- 133 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~---~~~--------~~~~~~~yv--- 133 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. ....+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477777563 221 011234455
Q ss_pred --ccCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 008676 134 --TQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (557)
Q Consensus 134 --~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (557)
+|++. +.+.+ +...+.-..+.+........+...++.+.+++++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33333 444443332222111112345667788889998884
No 482
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.11 E-value=4.9e-06 Score=76.48 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008676 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (557)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL-----~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 240 (557)
.+.+.+...+..- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445566555321 12222 2345788988877665553 2345555 99999999999999988764
No 483
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.09 E-value=0.0002 Score=70.90 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=101.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC--ChhhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHhhH-H
Q 008676 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT--GYNSILA----RGSCASFVFGFVTFMSIGGFPSFVEDMK-V 463 (557)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~--~~~~~~~----r~g~lff~~~~~~~~~~~~~~~~~~er~-v 463 (557)
|+++..+|||.....-+++-++..++.|.+|-+. +. ..++... -.|.+.+.+...+.. .... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhH-HHHHHHhC
Confidence 6778899999999988888888888888887542 11 1112111 122222222111111 1111 112222 2
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 008676 464 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 543 (557)
Q Consensus 464 ~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~~~~~~~~s~~~~i~~~~p~~~ 543 (557)
+.++....=-++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++...+..+++.++++..++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2222222334578999999999999999999999999998877554 33554555566667778899999999999988
Q ss_pred HHHHHHHHHHH
Q 008676 544 MGIITGAGIQV 554 (557)
Q Consensus 544 ~a~~~~~~~~~ 554 (557)
.++.+.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (236)
T TIGR01247 156 GFQIIMSMLML 166 (236)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=98.09 E-value=2.9e-06 Score=89.61 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=58.1
Q ss_pred eeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCcccEEEEccCCCCCCCCCHHHHH
Q 008676 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETI 149 (557)
Q Consensus 72 L~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l 149 (557)
++.+.-.+++|++++|+|+||+|||||+|.|+|...+. +|+|.+++.... ...+.+.+++|+..++.+ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 45555567899999999999999999999999998875 899999874321 123568899998877764 455554
Q ss_pred HH
Q 008676 150 SY 151 (557)
Q Consensus 150 ~~ 151 (557)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.08 E-value=9.8e-05 Score=86.33 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 008676 209 ILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 255 (557)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999974
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07 E-value=3.4e-05 Score=68.85 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCC
Q 008676 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQP 254 (557)
Q Consensus 200 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~ 254 (557)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3445555566778999999998765 56667778888877643 467888888864
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.04 E-value=1.1e-05 Score=67.99 Aligned_cols=48 Identities=40% Similarity=0.518 Sum_probs=36.5
Q ss_pred cCCCCHHHHH-HHHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008676 192 LRGISGGERR-RVSIALEI------LM------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (557)
Q Consensus 192 ~~~LSgGerq-Rv~ia~aL------~~------~p~llllDEPtsgLD~~~~~~i~~~L~~ 239 (557)
..++|||||| .+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 44443332 22 3799999999999999999999999874
No 488
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.02 E-value=8.5e-05 Score=70.95 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008676 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (557)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--ia~aL~~-~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 243 (557)
.+.+.++..++.- -.+++ +...+|+||+|++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 33458999999977 5555543 3444 399999999999999999887654
No 489
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.02 E-value=5.4e-06 Score=79.47 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch-HHHhcCCeEEEeeC
Q 008676 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-EVFELFDRLYLLSG 270 (557)
Q Consensus 197 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~~L~~ 270 (557)
-|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++...+|.+|++.+|...+ .....||++++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 378899999999999999988777 8899999999999998886667899999998532 35678999988764
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=1.7e-05 Score=89.61 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCcccEEEEccCCCCCCCCCHHHHHHHHhhc
Q 008676 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (557)
Q Consensus 81 ~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~-----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (557)
..+.++|+||||+|||||++++.+...+.. ...+-+.+||....... ...++-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~----------------~~i~~~llg--- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP----------------REVTNPLLG--- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH----------------HHHhHHhcC---
Confidence 346799999999999999999998764320 01223555543221000 000111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008676 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235 (557)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 235 (557)
.. .+...+...+.++..|+.+..+..+ ..+||| +||+|| +..||+..+..+.+
T Consensus 235 ----~~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 ----SV-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred ----Cc-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01 1111223455677788876555543 458888 999999 79999999999999
Q ss_pred HHHH
Q 008676 236 TLRC 239 (557)
Q Consensus 236 ~L~~ 239 (557)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9865
No 491
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.01 E-value=1.2e-05 Score=87.53 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.4
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCch-------HHHhcCCeEEEeeCCe
Q 008676 211 MRPRLLFLDEPTSGL----D-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPSS-------EVFELFDRLYLLSGGK 272 (557)
Q Consensus 211 ~~p~llllDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 272 (557)
.+|+++++|.-++=. + ....+++...|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234555666777755 69999999996432 1567899999998654
No 492
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.99 E-value=2.3e-05 Score=78.02 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCC
Q 008676 210 LMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQP 254 (557)
Q Consensus 210 ~~~p~llllDEPtsgLD~~~~~~i~~~-L~~l~~-~g~tvi~~~H~~ 254 (557)
+.+..++|+||+-.|=++.....+... ++.+.+ .+..++++||..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 456789999999999999998777554 566776 488999999995
No 493
>PRK08149 ATP synthase SpaL; Validated
Probab=97.99 E-value=8.2e-06 Score=87.41 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=55.5
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCcccEEEEccCC
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---------LSFGTAAYVTQDD 137 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~ 137 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|++.. ...+++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 999999999999999999999999999988776434589999997632 1225677776654
No 494
>PRK13764 ATPase; Provisional
Probab=97.97 E-value=5.3e-05 Score=84.49 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=50.1
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCchHHHhcCCeEEEeeCCeE
Q 008676 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------------QPSSEVFELFDRLYLLSGGKT 273 (557)
Q Consensus 209 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------------~~~~~i~~~~D~v~~L~~G~i 273 (557)
|..+|+++++||.-.. .+ ++.+..++..|..++.+.| +. ..+.+.+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 6789999999999743 22 4555555556888999999 64 467789999999999999
Q ss_pred --EEEcCcch
Q 008676 274 --VYFGETSA 281 (557)
Q Consensus 274 --v~~G~~~~ 281 (557)
+|.+....
T Consensus 393 ~~v~~~~~~~ 402 (602)
T PRK13764 393 SKVYDLEFTV 402 (602)
T ss_pred EEEEeeeeEE
Confidence 78776443
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.96 E-value=6.5e-06 Score=80.20 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008676 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++|++++|.||||||||||++.|++.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.95 E-value=0.00014 Score=71.68 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=44.3
Q ss_pred hCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc--------hHHHhcCCeEEEee
Q 008676 211 MRPRLLFLDEPTS------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--------SEVFELFDRLYLLS 269 (557)
Q Consensus 211 ~~p~llllDEPts------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--------~~i~~~~D~v~~L~ 269 (557)
.+++++++| |.+ +.|+..+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 433 44566677888899999888999999999621 22567889999985
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.95 E-value=8.1e-06 Score=87.57 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=52.8
Q ss_pred EEEEEeEEEEEEccCcccccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 008676 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (557)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~~ 122 (557)
.++-++++..+. .+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 456666666553 346799999 999999999999999999999999999998876 6887777753
No 498
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.92 E-value=9.1e-06 Score=80.52 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=46.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeCCC-CcccEEEEccCCCCCCCCCHHHHHHHHhh
Q 008676 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT----ILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~----I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (557)
.+..+++|.||||||||||.+.|++.+++. +|. |.+++..... .....+++++.+ .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456899999999999999999999999875 676 5555432111 112346666533 3345566666655444
Q ss_pred c
Q 008676 155 L 155 (557)
Q Consensus 155 ~ 155 (557)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.88 E-value=1.7e-05 Score=82.24 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=44.3
Q ss_pred cccceeceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 008676 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (557)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~ilG~sGaGKSTLl~~L~g~~~~~~~~~G~I~~~G~ 121 (557)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 46699999 999999999999999999999999999998875 677776664
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.88 E-value=5.6e-05 Score=79.83 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008676 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (557)
Q Consensus 80 ~~Ge~~~ilG~sGaGKSTLl~~L~g~~~ 107 (557)
++|.+++|.||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999874
Done!