Query 008678
Match_columns 557
No_of_seqs 414 out of 1578
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 99.8 4.5E-20 9.8E-25 191.5 12.3 216 160-402 23-318 (320)
2 PRK11493 sseA 3-mercaptopyruva 99.8 4.3E-20 9.3E-25 187.8 10.4 215 160-402 6-280 (281)
3 COG2897 SseA Rhodanese-related 99.8 7.1E-20 1.5E-24 187.5 11.9 215 159-402 11-283 (285)
4 cd01533 4RHOD_Repeat_2 Member 99.8 1.1E-19 2.3E-24 159.0 10.0 99 270-396 10-109 (109)
5 PRK09629 bifunctional thiosulf 99.8 5.9E-19 1.3E-23 197.3 12.5 217 160-403 10-273 (610)
6 cd01518 RHOD_YceA Member of th 99.8 5.7E-19 1.2E-23 152.3 9.2 98 271-393 3-100 (101)
7 PLN02160 thiosulfate sulfurtra 99.8 1.6E-18 3.5E-23 159.4 11.0 115 270-404 15-131 (136)
8 cd01534 4RHOD_Repeat_3 Member 99.8 1.2E-18 2.6E-23 148.9 9.0 94 272-394 1-95 (95)
9 cd01527 RHOD_YgaP Member of th 99.8 1.6E-18 3.5E-23 148.5 9.8 97 271-399 3-99 (99)
10 cd01448 TST_Repeat_1 Thiosulfa 99.8 2.1E-18 4.7E-23 153.0 9.6 110 272-396 2-122 (122)
11 cd01523 RHOD_Lact_B Member of 99.8 2.8E-18 6.1E-23 147.5 9.8 99 272-393 1-99 (100)
12 PRK00162 glpE thiosulfate sulf 99.8 2.6E-18 5.6E-23 150.1 9.3 101 270-401 5-105 (108)
13 cd01519 RHOD_HSP67B2 Member of 99.8 1.5E-18 3.3E-23 149.6 7.7 105 273-394 2-106 (106)
14 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.5E-18 5.4E-23 151.3 8.0 107 272-394 1-118 (118)
15 cd01521 RHOD_PspE2 Member of t 99.7 9.2E-18 2E-22 147.5 10.2 101 269-399 7-110 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 7.3E-18 1.6E-22 150.9 8.9 111 269-399 7-118 (122)
17 cd01528 RHOD_2 Member of the R 99.7 2.1E-17 4.5E-22 142.6 9.9 97 271-394 1-98 (101)
18 cd01525 RHOD_Kc Member of the 99.7 1.7E-17 3.8E-22 143.1 9.5 100 272-393 1-104 (105)
19 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 2E-17 4.3E-22 156.6 10.6 110 270-399 36-162 (162)
20 PF00581 Rhodanese: Rhodanese- 99.7 2.8E-17 6E-22 141.2 9.8 108 273-395 1-113 (113)
21 cd01520 RHOD_YbbB Member of th 99.7 3.5E-17 7.7E-22 148.0 10.7 105 272-394 1-126 (128)
22 cd01444 GlpE_ST GlpE sulfurtra 99.7 2.3E-17 4.9E-22 139.7 8.6 92 272-393 2-95 (96)
23 PRK11493 sseA 3-mercaptopyruva 99.7 2.4E-17 5.1E-22 167.8 10.1 119 271-404 6-138 (281)
24 smart00450 RHOD Rhodanese Homo 99.7 2.3E-17 5E-22 137.2 8.1 99 284-398 2-100 (100)
25 KOG1530 Rhodanese-related sulf 99.7 3.3E-17 7.3E-22 149.5 9.0 117 266-400 19-135 (136)
26 cd01447 Polysulfide_ST Polysul 99.7 3.7E-17 8.1E-22 139.8 8.5 102 272-396 1-103 (103)
27 PLN02723 3-mercaptopyruvate su 99.7 3.8E-17 8.2E-22 169.7 10.0 118 271-403 23-153 (320)
28 cd01445 TST_Repeats Thiosulfat 99.7 4.8E-17 1E-21 150.0 9.0 108 272-393 1-137 (138)
29 cd01535 4RHOD_Repeat_4 Member 99.7 6.7E-17 1.4E-21 150.4 9.2 98 277-404 2-99 (145)
30 PRK07411 hypothetical protein; 99.7 6.5E-17 1.4E-21 172.3 9.8 182 189-399 176-386 (390)
31 cd01524 RHOD_Pyr_redox Member 99.7 1E-16 2.2E-21 135.7 8.5 89 272-393 1-89 (90)
32 PRK07878 molybdopterin biosynt 99.7 1.1E-16 2.4E-21 170.6 10.2 180 188-398 183-387 (392)
33 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.6E-16 3.5E-21 143.1 9.4 99 271-393 3-120 (121)
34 PRK08762 molybdopterin biosynt 99.7 1.9E-16 4E-21 167.7 11.0 109 271-409 4-112 (376)
35 PRK09629 bifunctional thiosulf 99.7 1.6E-16 3.4E-21 178.0 10.4 120 270-404 9-132 (610)
36 cd01529 4RHOD_Repeats Member o 99.7 1.9E-16 4.1E-21 135.4 8.4 87 284-394 10-96 (96)
37 cd01522 RHOD_1 Member of the R 99.7 1.3E-16 2.9E-21 142.3 7.7 103 272-394 1-104 (117)
38 COG0607 PspE Rhodanese-related 99.7 2.7E-16 5.8E-21 135.6 8.7 94 280-401 14-108 (110)
39 cd01532 4RHOD_Repeat_1 Member 99.7 1.9E-16 4E-21 135.2 7.5 84 283-394 7-92 (92)
40 cd01531 Acr2p Eukaryotic arsen 99.6 8.9E-16 1.9E-20 135.3 8.3 100 271-395 3-112 (113)
41 KOG2017 Molybdopterin synthase 99.6 5.1E-16 1.1E-20 160.8 5.5 184 183-395 196-419 (427)
42 cd00158 RHOD Rhodanese Homolog 99.6 2.3E-15 4.9E-20 124.0 7.3 88 277-393 2-89 (89)
43 PRK05597 molybdopterin biosynt 99.6 9.5E-16 2.1E-20 161.6 5.9 167 189-394 166-354 (355)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 3.3E-15 7.1E-20 131.9 8.2 98 271-393 3-112 (113)
45 COG2897 SseA Rhodanese-related 99.6 3.7E-15 8.1E-20 152.9 9.7 121 271-405 12-142 (285)
46 PRK01415 hypothetical protein; 99.6 5.8E-15 1.2E-19 148.9 10.2 101 271-396 113-213 (247)
47 TIGR02981 phageshock_pspE phag 99.6 4.3E-15 9.3E-20 130.7 7.8 81 285-394 17-97 (101)
48 PRK05320 rhodanese superfamily 99.6 1.1E-14 2.4E-19 147.5 10.3 101 270-394 110-215 (257)
49 PRK10287 thiosulfate:cyanide s 99.5 1.4E-14 3E-19 128.3 8.0 81 285-394 19-99 (104)
50 PRK00142 putative rhodanese-re 99.5 3.8E-14 8.1E-19 147.5 10.1 100 270-394 112-211 (314)
51 PRK05600 thiamine biosynthesis 99.5 1.8E-14 4E-19 152.8 6.9 168 189-390 182-369 (370)
52 cd01446 DSP_MapKP N-terminal r 99.4 6.1E-13 1.3E-17 120.3 10.1 106 271-394 1-126 (132)
53 PRK11784 tRNA 2-selenouridine 99.4 5.4E-13 1.2E-17 140.5 10.8 113 273-401 4-135 (345)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 1.2E-12 2.6E-17 136.2 10.2 104 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.0 1E-09 2.2E-14 112.2 9.0 119 271-404 6-139 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 8.7E-10 1.9E-14 120.9 7.4 73 285-387 406-482 (482)
57 KOG1529 Mercaptopyruvate sulfu 98.9 3.3E-09 7.1E-14 108.5 10.1 153 224-394 70-275 (286)
58 COG1054 Predicted sulfurtransf 98.9 2.3E-09 4.9E-14 110.3 5.5 99 271-394 114-212 (308)
59 KOG3772 M-phase inducer phosph 98.5 2.1E-07 4.5E-12 97.2 6.9 103 270-395 156-276 (325)
60 COG5105 MIH1 Mitotic inducer, 97.1 0.00089 1.9E-08 70.2 6.4 98 270-394 242-357 (427)
61 COG2603 Predicted ATPase [Gene 93.8 0.095 2.1E-06 54.9 5.3 95 285-393 14-127 (334)
62 PF04273 DUF442: Putative phos 93.4 0.15 3.2E-06 46.1 5.3 88 269-373 12-105 (110)
63 TIGR01244 conserved hypothetic 92.4 0.56 1.2E-05 43.3 7.7 111 270-401 13-130 (135)
64 PF13350 Y_phosphatase3: Tyros 90.0 1.2 2.7E-05 41.9 7.6 99 268-380 26-152 (164)
65 KOG1093 Predicted protein kina 88.1 0.21 4.5E-06 56.5 1.1 96 271-392 623-718 (725)
66 PF05237 MoeZ_MoeB: MoeZ/MoeB 86.6 0.094 2E-06 44.7 -2.1 46 189-237 3-48 (84)
67 cd01445 TST_Repeats Thiosulfat 84.1 1.7 3.7E-05 40.3 4.8 71 189-269 53-124 (138)
68 PRK00142 putative rhodanese-re 83.3 0.15 3.3E-06 53.7 -2.7 53 268-330 12-64 (314)
69 PF11127 DUF2892: Protein of u 79.4 4 8.6E-05 33.1 4.8 45 428-476 14-58 (66)
70 PF05706 CDKN3: Cyclin-depende 76.5 6.5 0.00014 38.4 6.1 80 289-378 75-159 (168)
71 PRK07688 thiamine/molybdopteri 74.2 0.64 1.4E-05 49.6 -1.5 115 189-307 164-318 (339)
72 cd00127 DSPc Dual specificity 74.1 7 0.00015 34.9 5.4 27 353-379 80-109 (139)
73 PF14159 CAAD: CAAD domains of 72.8 5.4 0.00012 35.0 4.2 38 446-483 48-85 (90)
74 KOG1717 Dual specificity phosp 72.1 3.3 7.1E-05 43.4 3.1 97 272-394 6-123 (343)
75 PLN02777 photosystem I P subun 70.4 4.7 0.0001 39.2 3.5 39 446-484 123-161 (167)
76 PLN02806 complex I subunit 60.3 9.8 0.00021 32.9 3.1 55 427-487 5-68 (81)
77 PF09992 DUF2233: Predicted pe 57.9 12 0.00027 35.1 3.9 40 353-392 99-143 (170)
78 TIGR03167 tRNA_sel_U_synt tRNA 56.1 34 0.00074 36.3 7.1 33 271-304 137-172 (311)
79 KOG0781 Signal recognition par 54.4 69 0.0015 36.5 9.2 106 72-189 271-385 (587)
80 PF01451 LMWPc: Low molecular 53.6 11 0.00025 34.1 2.7 36 357-392 1-41 (138)
81 PF01442 Apolipoprotein: Apoli 52.7 2.4 5.1E-05 39.6 -2.0 42 87-128 41-82 (202)
82 smart00195 DSPc Dual specifici 52.6 26 0.00057 31.4 4.9 29 352-380 76-107 (138)
83 PF00782 DSPc: Dual specificit 51.1 31 0.00067 30.6 5.1 28 353-380 72-102 (133)
84 PLN02727 NAD kinase 49.4 31 0.00067 41.9 6.0 92 270-375 267-364 (986)
85 smart00226 LMWPc Low molecular 44.7 23 0.00051 32.2 3.3 36 357-392 1-37 (140)
86 KOG3636 Uncharacterized conser 44.1 72 0.0016 36.0 7.3 21 287-307 327-347 (669)
87 PRK08223 hypothetical protein; 43.0 13 0.00029 39.1 1.6 16 183-198 160-175 (287)
88 COG2519 GCD14 tRNA(1-methylade 41.7 41 0.00088 35.1 4.8 32 352-383 186-217 (256)
89 PRK08762 molybdopterin biosynt 41.5 35 0.00075 36.8 4.5 43 353-396 134-176 (376)
90 PF02590 SPOUT_MTase: Predicte 39.7 87 0.0019 30.0 6.5 65 348-412 61-135 (155)
91 PF05957 DUF883: Bacterial pro 38.2 47 0.001 28.7 4.1 49 70-118 6-54 (94)
92 COG2453 CDC14 Predicted protei 35.9 67 0.0014 31.0 5.1 27 353-379 104-133 (180)
93 cd01448 TST_Repeat_1 Thiosulfa 34.7 27 0.00059 30.6 2.1 83 176-269 17-106 (122)
94 PF03853 YjeF_N: YjeF-related 33.5 72 0.0016 30.5 4.9 52 352-404 23-89 (169)
95 cd01449 TST_Repeat_2 Thiosulfa 32.4 80 0.0017 27.3 4.7 65 189-269 40-104 (118)
96 TIGR02689 ars_reduc_gluta arse 31.1 87 0.0019 28.3 4.8 35 356-390 2-37 (126)
97 PRK10126 tyrosine phosphatase; 30.2 63 0.0014 30.1 3.8 37 355-392 3-40 (147)
98 PRK00103 rRNA large subunit me 28.6 2.4E+02 0.0052 27.1 7.5 63 350-412 63-135 (157)
99 PF05957 DUF883: Bacterial pro 27.1 73 0.0016 27.5 3.4 57 78-134 7-63 (94)
100 cd00115 LMWPc Substituted upda 26.9 56 0.0012 29.8 2.8 37 356-392 2-40 (141)
101 PRK11391 etp phosphotyrosine-p 26.5 83 0.0018 29.4 3.9 37 355-392 3-40 (144)
102 PLN03050 pyridoxine (pyridoxam 24.8 1.1E+02 0.0023 31.5 4.6 31 354-385 60-93 (246)
103 COG3453 Uncharacterized protei 24.3 1.3E+02 0.0029 28.3 4.6 86 269-373 13-106 (130)
104 PTZ00393 protein tyrosine phos 23.9 1.5E+02 0.0032 30.8 5.3 27 353-379 169-197 (241)
105 PF07464 ApoLp-III: Apolipopho 23.1 1.3E+02 0.0028 29.1 4.6 41 95-135 34-74 (155)
106 COG2085 Predicted dinucleotide 22.8 3.9E+02 0.0084 27.2 8.0 27 354-380 147-174 (211)
107 PRK13530 arsenate reductase; P 22.8 1.5E+02 0.0032 27.3 4.8 35 355-389 4-39 (133)
108 cd01519 RHOD_HSP67B2 Member of 22.5 76 0.0016 26.9 2.6 77 175-269 16-92 (106)
109 PF02302 PTS_IIB: PTS system, 21.9 1.1E+02 0.0024 25.4 3.5 32 356-388 1-37 (90)
110 TIGR00853 pts-lac PTS system, 21.7 1.1E+02 0.0024 26.7 3.6 38 354-392 3-44 (95)
111 PF03162 Y_phosphatase2: Tyros 20.8 1.3E+02 0.0028 29.0 4.1 38 353-394 90-129 (164)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=4.5e-20 Score=191.45 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=150.4
Q ss_pred chhhhhhhhhHHhhhhhhccCc---------ceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHH
Q 008678 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~ 230 (557)
-+++|||++.+..-+-.|.|.+ +...|.-||++..+.-++.+....... ....+. ....|+.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----~~~~lp-----~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----LPHMLP-----SEEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----cCCCCC-----CHHHHHH
Confidence 4667777777754444556653 124577899998888776653322111 111111 1345778
Q ss_pred HHHhcCCCCCCCeeehhhhhhhHHHHHHHHHHHHhCCCC---------------------C-------------------
Q 008678 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G------------------- 270 (557)
Q Consensus 231 l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~gy~---------------------g------------------- 270 (557)
+.+.+|+.++++||+|.-. |...+. -+||.++..||. +
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~-g~~~a~-r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGK-GIFSAA-RVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKV 171 (320)
T ss_pred HHHHcCCCCCCEEEEEcCC-CcchHH-HHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccc
Confidence 8888999999999865321 111111 134554433321 0
Q ss_pred -------------------ccCHHHHHHHHhCCCCcEEEEecChhhH-----------hhcCCCCCcccccccccccCcc
Q 008678 271 -------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP 320 (557)
Q Consensus 271 -------------------~ISp~ea~elLa~~~~avLIDVRsp~Ef-----------~~GHIPGAi~a~~~~~~nIPls 320 (557)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~ 242 (320)
T PLN02723 172 YQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFP 242 (320)
T ss_pred cccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHH
Confidence 035567777774 456889999999998 579999999 99987
Q ss_pred cccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCce
Q 008678 321 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRI 399 (557)
Q Consensus 321 eL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka-aGLPV 399 (557)
.+.... ..+++++++++++.++|+. ++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. ..+|+
T Consensus 243 ~~~~~~-~~~~~~~el~~~~~~~gi~------~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 243 QMLDSS-QTLLPAEELKKRFEQEGIS------LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HhcCCC-CCCCCHHHHHHHHHhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 654332 3467788999988888874 889999999999999999999999999999999999999987 47888
Q ss_pred ecc
Q 008678 400 KEL 402 (557)
Q Consensus 400 ~~~ 402 (557)
+++
T Consensus 316 ~~~ 318 (320)
T PLN02723 316 ATS 318 (320)
T ss_pred cCC
Confidence 764
No 2
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=4.3e-20 Score=187.80 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=147.3
Q ss_pred chhhhhhhhhHHhhhhhhccCcc----------eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHH
Q 008678 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale 229 (557)
-|..|+|++++..-+-.|.|.|+ .-.|.-||++.....+..+.... .+ +...... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~----~~----~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDH----TS----PLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCC----CC----CCCCCCC-CHHHHH
Confidence 36778888887665567888885 24567789998776555432111 11 1111111 124467
Q ss_pred HHHHhcCCCCCCCeeehhhhhhhHHHHHHHHHHHHhCCCC---------------------C-----------------c
Q 008678 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------D 271 (557)
Q Consensus 230 ~l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~gy~---------------------g-----------------~ 271 (557)
.+.+.+|+++++|||+|.-.... .+. ..||.+...||. + .
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~-~a~-~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLF-SAP-RAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAV 154 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCc-hHH-HHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccce
Confidence 77888899999999865432111 111 133443332321 0 0
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHh-----------hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHH
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~-----------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L 340 (557)
.+.+++...+. +++.+|||+|+++||. .||||||+ |+|+..+... ..+++++++++.+
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~ 223 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIF 223 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHH
Confidence 12234444442 3468999999999994 69999999 9998776532 2356678888888
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCceecc
Q 008678 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 341 ~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka-aGLPV~~~ 402 (557)
.+.|+. ++++||+||++|.||..+++.|+.+||+++++|+|||.+|.. .++|++++
T Consensus 224 ~~~g~~------~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 FGRGVS------FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 877774 788999999999999999999999999999999999999998 79999864
No 3
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.1e-20 Score=187.52 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=159.2
Q ss_pred cchhhhhhhhhHH-----hhhhhhccCcc--eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHH
Q 008678 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (557)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l 231 (557)
--|+.|||.+++. .++-++..-.. -..|.-||++..+..+....++-.....+ ++-. ...|+.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~----~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPH----MLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCC----CCCC-----HHHHHHH
Confidence 4578899998865 22333332222 36788899999999988877766332112 1111 3447788
Q ss_pred HHhcCCCCCCCeeehhhhhhhHHHHHH--HHHHHHhCCCC--------------------------------------Cc
Q 008678 232 ERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGYS--------------------------------------GD 271 (557)
Q Consensus 232 ~~~lG~~~~~pVv~~~v~~g~~a~l~~--~~~l~~~~gy~--------------------------------------g~ 271 (557)
.+.+|+..+++||+|.. ...+++ +||++++-|+. ..
T Consensus 82 ~~~~GI~~d~tVVvYdd----~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTVVVYDD----GGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEEEEECC----CCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 89999999999985443 222222 57776664331 02
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhh----------cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHH
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~----------GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~ 341 (557)
.+..+....+. ....+|||+|++++|.. ||||||+ |+|+.++.+ -+.+++.+++++.+++
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 34456666663 46788999999999987 9999999 999988876 4556777788888787
Q ss_pred HHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCceecc
Q 008678 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 342 alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka-aGLPV~~~ 402 (557)
..|++ ++++||+||++|.||+..+..|+.+|+.++++|+|+|.+|.+ .+.|++++
T Consensus 228 ~~gi~------~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGID------PDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCCC------CCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 88884 899999999999999999999999999988999999999988 56788775
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.81 E-value=1.1e-19 Score=159.04 Aligned_cols=99 Identities=26% Similarity=0.220 Sum_probs=83.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
..++++++.++++.+.+.+|||+|++.||..+|||||+ |+|+.++......+ +
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------A----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------C-----
Confidence 46899999999865446799999999999999999999 99987664332211 1
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCc-eEEecccHHHHHHcC
Q 008678 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~n-VyvLdGGi~aWkaaG 396 (557)
.+++++||+||++|.||..+++.|+.+||++ +++|+||+.+|+.+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1367899999999999999999999999998 999999999999876
No 5
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.78 E-value=5.9e-19 Score=197.29 Aligned_cols=217 Identities=17% Similarity=0.093 Sum_probs=155.5
Q ss_pred chhhhhhhhhHHhhhhhhccCcceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC
Q 008678 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~ 239 (557)
-++.++|++.+..-+-.|.|.|+.--|.-||++..+..+............+ .+.. ...++...+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCCC-----HHHHHHHHHHcCCCC
Confidence 4778888888866566788888877888899998776665443221111111 1111 234667778899999
Q ss_pred CCCeeehhhhhhhHHHHHHHHHHHHhCCCC--------------------------------------CccCHHHHHHHH
Q 008678 240 NDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLSPKSTLELL 281 (557)
Q Consensus 240 ~~pVv~~~v~~g~~a~l~~~~~l~~~~gy~--------------------------------------g~ISp~ea~elL 281 (557)
+++||+|.-..+. .+.. +||.+++.|+. -.++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~-~A~R-~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGG-WAGR-FIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCc-hHHH-HHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 9999865321111 1111 34554443321 024667888887
Q ss_pred hCCCCcEEEEecChhhHh--------hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 008678 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 282 a~~~~avLIDVRsp~Ef~--------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~k 353 (557)
+ +++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++++..+|++ +
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi~------~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGIT------P 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCCC------C
Confidence 4 4678999999999994 79999999 89876543222 2356778899999888874 8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCceeccC
Q 008678 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKELK 403 (557)
Q Consensus 354 d~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka-aGLPV~~~~ 403 (557)
+++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++..
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 89999999999999999999999999999999999999987 589998744
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.78 E-value=5.7e-19 Score=152.27 Aligned_cols=98 Identities=22% Similarity=0.281 Sum_probs=81.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
.|+++++.++++ +++.+|||||++.||..+|||||+ |+|+.++..... .+...+ .
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~-------~~~~~~---------~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPF-------WLDENL---------D 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHH-------HHHhhh---------h
Confidence 589999999985 567899999999999999999999 999877643211 111100 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2578999999999999999999999999999999999999996
No 7
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=1.6e-18 Score=159.40 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=89.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCC--cccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGA--i~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~ 347 (557)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. .. .+.+++++..+..
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~-~l~~~~~~~~~~~------ 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QG-RVKNQEFLEQVSS------ 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-cc-ccCCHHHHHHHHh------
Confidence 46899999999853 468999999999999999999 7 788644321 11 1222222222111
Q ss_pred hcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCC
Q 008678 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 348 Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~ 404 (557)
.++++++||+||++|.||..++..|...||++|++|+|||.+|+++|+|+++...
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 131 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEE 131 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccccc
Confidence 1257889999999999999999999999999999999999999999999987443
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=1.2e-18 Score=148.92 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
|+++++.++++++ ++.+|||||++.||..+|||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999999654 35789999999999999999999 999766543222111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..++++||+||.+|.||..+++.|+.+||+ |++|+||+.+|.+
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 125789999999999999999999999999 9999999999963
No 9
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.6e-18 Score=148.48 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
.|+++++.++++. +.+|||+|++.||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 5899999999864 3899999999999999999999 999776643210 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCce
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV 399 (557)
.+++++||+||++|.|+..++..|+++||+++++|+||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2478999999999999999999999999999999999999999999885
No 10
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.76 E-value=2.1e-18 Score=153.03 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEecCh-------hhHhhcCCCCCcccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp-------~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llkdp~~L~~~L~ 341 (557)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ...++++++++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999985 357899999999 999999999999 8997766432 2335566677777776
Q ss_pred HHHHhhhcccCCCCeEEEEeCC-ChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008678 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 342 alGI~~Lk~v~kd~~VIVyC~s-G~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaG 396 (557)
..++ +++++|||||++ |.++..+++.|+.+||++|++|+|||.+|+++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6555 489999999999 589999999999999999999999999999865
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.76 E-value=2.8e-18 Score=147.49 Aligned_cols=99 Identities=23% Similarity=0.235 Sum_probs=80.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v 351 (557)
|+++++.++++++++++|||||++.||..+|||||+ |+|+..+..... . ...+.+ ..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~---~---~~~~~~--------~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFL---E---IEEDIL--------DQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHH---H---hhHHHH--------hhC
Confidence 689999999976567899999999999999999999 999876543210 0 000000 124
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
+++++||+||.+|.||..++..|+.+||+ +++|+||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 58899999999999999999999999998 999999999996
No 12
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.75 E-value=2.6e-18 Score=150.10 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=87.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
..++++++.++++ +++.++||+|++.||..+|||||+ |+|+..+.....
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~---------------------- 53 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMR---------------------- 53 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHH----------------------
Confidence 3689999999985 346899999999999999999999 898765433211
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceec
Q 008678 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~ 401 (557)
.+++++++++||.+|.+|..++..|+..||+++++|+||+.+|++.++|++.
T Consensus 54 ~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 54 QADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred hcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1247889999999999999999999999999999999999999999999876
No 13
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.75 E-value=1.5e-18 Score=149.65 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=84.5
Q ss_pred CHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 008678 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~ 352 (557)
|++++.++++.+++.+|||+|++.||..||||||+ |+|+.++... ...+++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888842457999999999999999999999 9998776432 12234455554443333 4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 14
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=2.5e-18 Score=151.27 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhh-----------cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHH
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~-----------GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L 340 (557)
++++++.++++ +++.+|||+|++.||.. ||||||+ ++|+..+.... ..+++++++++.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 45689999999999987 9999999 89987655432 2455677777777
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 341 ~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..+++ +++++||+||++|.||.++++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 76665 3789999999999999999999999999999999999999963
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=9.2e-18 Score=147.51 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCccCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 008678 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~ 347 (557)
...++++++.++++++ ++.+|||+|++.+|..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3579999999999754 46899999999999999999999 888765532110
Q ss_pred hcccCCCCeEEEEeCCCh--HHHHHHHHHHHhcCCceEEecccHHHHHHcCCce
Q 008678 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 348 Lk~v~kd~~VIVyC~sG~--RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV 399 (557)
..++++++||+||.+|. ++..+++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 11357899999999884 899999999999995 999999999999999985
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.73 E-value=7.3e-18 Score=150.90 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 008678 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~L 348 (557)
...|+++++.++++++++++|||+|++.||..+|||||+ |+|+..+......+.+ + .+...
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~----- 67 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPL----- 67 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhccc-----
Confidence 357999999999865467899999999999999999999 9998776543222110 0 01111
Q ss_pred cccCCCCeEEEEeCCChHHHHHHHHHHHhcC-CceEEecccHHHHHHcCCce
Q 008678 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 349 k~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf-~nVyvLdGGi~aWkaaGLPV 399 (557)
.++++++||+||++|.||..+++.|+.+|| +++++|+|||.+|+....+.
T Consensus 68 -~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 68 -DNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred -ccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 135889999999999999999999999999 79999999999999876544
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.72 E-value=2.1e-17 Score=142.58 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=80.9
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 271 ~ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
.|+++++.+++..+ .+.++||+|++.||..+|||||+ |+|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 37899999999653 36899999999999999999999 99986654322111 0
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..+++++||+||++|.||..+++.|.++||+++++|+||+.+|.+
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 113689999999999999999999999999999999999999975
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.72 E-value=1.7e-17 Score=143.08 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccc---hhhhhhcCchhhHHHHHHHHHhh
Q 008678 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 272 ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~---~l~~Llkdp~~L~~~L~alGI~~ 347 (557)
||++++.++++++ ++.+|||+|++.||..||||||+ ++|+..+.. .... +++...+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~---------- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLE---------- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHH----------
Confidence 6899999999643 36899999999999999999999 898765432 1111 11111111
Q ss_pred hcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 348 Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
..++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 62 ---~~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 ---NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ---hhcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 0247899999999999999999999999999999999999996
No 19
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.72 E-value=2e-17 Score=156.60 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=84.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChh----hHhhc---------CCCCCcccccccccccCcc---cccchhhhhhcCc
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYLP---EVGGSVKKLLRGG 333 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~----Ef~~G---------HIPGAi~a~~~~~~nIPls---eL~~~l~~Llkdp 333 (557)
..|+++++.++++ +++.+|||||++. ||..| |||||+ ++|+. .+.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 3699999999995 4568999999876 46544 999999 77742 222110 0
Q ss_pred hhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCce
Q 008678 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 334 ~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV 399 (557)
..+.+.+.+++. .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|+++|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 123333333332 248999999999997 8999999999999999999999999999999985
No 20
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.72 E-value=2.8e-17 Score=141.19 Aligned_cols=108 Identities=29% Similarity=0.488 Sum_probs=80.8
Q ss_pred CHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 008678 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~ 352 (557)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|+..+..... ......+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPDEP--SLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSSSS--BCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccccc--cccccccccccccccc----ccc
Confidence 689999999 6788999999999999999999999 888755411100 0011222222333332 246
Q ss_pred CCCeEEEEeCCChHHHHHHHH-----HHHhcCCceEEecccHHHHHHc
Q 008678 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~-----L~~lGf~nVyvLdGGi~aWkaa 395 (557)
++++|||||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999888877776 8899999999999999999864
No 21
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.71 E-value=3.5e-17 Score=147.97 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchh-----------------hhhhcCch
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 334 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l-----------------~~Llkdp~ 334 (557)
||++++.+++. ++.+|||||++.||..||||||+ |+|+....... +..+. +.
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELV-SG 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hh
Confidence 68999999985 46899999999999999999999 89975432210 00011 12
Q ss_pred hhHHHHHHH---HHhhhcccCCCCeEEEEeC-CChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 335 ELDDTLTAA---VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 335 ~L~~~L~al---GI~~Lk~v~kd~~VIVyC~-sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
.+++.+..+ ++ +++++||+||+ +|.||.++++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 233333332 44 58999999997 68999999999999999 69999999999975
No 22
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.71 E-value=2.3e-17 Score=139.69 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=79.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhh--cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~--GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
|+++++.++++++.++++||+|++.||.. +|||||+ ++|+.++.....
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~---------------------- 51 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG---------------------- 51 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh----------------------
Confidence 78999999986545789999999999999 9999999 999876543211
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
..+++++||+||++|.++..+++.|+..||+++++|+||+.+|+
T Consensus 52 ~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 13578999999999999999999999999999999999999996
No 23
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.71 E-value=2.4e-17 Score=167.77 Aligned_cols=119 Identities=14% Similarity=0.234 Sum_probs=100.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecC----------hhhHhhcCCCCCcccccccccccCcccccch---hhhhhcCchhhH
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELD 337 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs----------p~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llkdp~~L~ 337 (557)
.++++++.++++ +++.+|||+|+ +.+|+.||||||+ |+|+..+... ...++++++.++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 489999999994 56799999997 7899999999999 7776554322 234556678899
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCC
Q 008678 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 338 ~~L~alGI~~Lk~v~kd~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~ 404 (557)
+++..+|++ ++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|++...+
T Consensus 77 ~~~~~~Gi~------~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGVN------QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCCC------CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 999999884 8999999999876 467889999999999999999999999999999987654
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.71 E-value=2.3e-17 Score=137.23 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=77.0
Q ss_pred CCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 008678 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~s 363 (557)
+++.+|||+|++.||..+|||||+ |+|+..+....... . ...+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-D-ILEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-C-HHHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999999 88877654332110 0 001222222222 3588999999999
Q ss_pred ChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCc
Q 008678 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 364 G~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLP 398 (557)
|.++..+++.|+..||+++++|+||+.+|+..|+|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998875
No 25
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.3e-17 Score=149.47 Aligned_cols=117 Identities=22% Similarity=0.259 Sum_probs=94.9
Q ss_pred CCCCCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008678 266 GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 266 ~gy~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI 345 (557)
......++.++++++++ .++.++||||+|+||..||||.++ |||+...... ..+++++|+++ .|.
T Consensus 19 ~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~ 83 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGS 83 (136)
T ss_pred cCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hcc
Confidence 34556789999999995 456999999999999999999999 9997544332 23456666554 233
Q ss_pred hhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCcee
Q 008678 346 RNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (557)
Q Consensus 346 ~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~ 400 (557)
. + .+.|++|||+|++|.||..|...|..+||+||.+|.|||.+|.+.++|..
T Consensus 84 ~--k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 S--K-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred c--C-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 2 1 34677999999999999999999999999999999999999999988864
No 26
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.70 E-value=3.7e-17 Score=139.82 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=80.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhH-hhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef-~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
|+++++.++++ +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+... .
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~~------~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHKP------A 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---ccccc------C
Confidence 67899999885 457899999999998 579999999 8887655321110 00 00001 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaG 396 (557)
++++++||+||.+|.++..+++.|+.+||+++++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3578999999999999999999999999999999999999998765
No 27
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.70 E-value=3.8e-17 Score=169.71 Aligned_cols=118 Identities=17% Similarity=0.295 Sum_probs=99.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEec--------C-hhhHhhcCCCCCcccccccccccCcccccch---hhhhhcCchhhHH
Q 008678 271 DLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDD 338 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVR--------s-p~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llkdp~~L~~ 338 (557)
.|+++++.++++ +++.+|||+| + ..+|..||||||+ ++|+..+... ...++++++.+++
T Consensus 23 lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred eecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 689999999995 4679999996 3 3789999999999 7776555432 3355667788999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccC
Q 008678 339 TLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 339 ~L~alGI~~Lk~v~kd~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~ 403 (557)
.+.++||. ++++|||||..|. .+.++++.|+.+||++|++|+||+.+|+++|+|++...
T Consensus 94 ~l~~~Gi~------~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 94 AVSALGIE------NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHcCCC------CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999985 7889999998886 56788999999999999999999999999999998753
No 28
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.69 E-value=4.8e-17 Score=150.02 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=90.1
Q ss_pred cCHHHHHHHHhC---CCCcEEEEecCh--------hhHhh------------cCCCCCcccccccccccCcccccc---h
Q 008678 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGG---S 325 (557)
Q Consensus 272 ISp~ea~elLa~---~~~avLIDVRsp--------~Ef~~------------GHIPGAi~a~~~~~~nIPlseL~~---~ 325 (557)
++++++.+.+.+ +++.+|||+|.. .+|.. ||||||+ ++|+..+.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999853 467999999987 89988 9999999 777654422 2
Q ss_pred hhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC---ChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 326 l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~s---G~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
....+++++++++.+..+||+ ++++||+||.+ |.++.++++.|+.+|+++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI~------~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCCC------CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 224556667899999999985 88999999986 779999999999999999999999999996
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.69 E-value=6.7e-17 Score=150.36 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=81.1
Q ss_pred HHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCe
Q 008678 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~ 356 (557)
+.+++.++.+.+|||||++.+|+.+|||||+ ++|...+...+. ..+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~----------------------~l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALE----------------------KLPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHH----------------------hcCCCCC
Confidence 4456655556899999999999999999999 777544432211 1246789
Q ss_pred EEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCC
Q 008678 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 357 VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~ 404 (557)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++.+.+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987644
No 30
>PRK07411 hypothetical protein; Validated
Probab=99.68 E-value=6.5e-17 Score=172.33 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=125.0
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCeeehhhhhhhHHHHH-------
Q 008678 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLW------- 257 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~--~~pVv~~~v~~g~~a~l~------- 257 (557)
||||+|++|+..+ .+..|.. +| |+++.-+..+ +.++.|.++-.+|+.+ ...++++-.+......+-
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~-~g-vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAE-GG-VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCcc-CC-cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999986432 3445666 77 8999999988 6888999998888643 133332211110000000
Q ss_pred -H-----HHHHHH-----------hCCCCCccCHHHHHHHHhCCC-CcEEEEecChhhHhhcCCCCCcccccccccccCc
Q 008678 258 -I-----FYWWWT-----------YGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (557)
Q Consensus 258 -~-----~~~l~~-----------~~gy~g~ISp~ea~elLa~~~-~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPl 319 (557)
. .|=.+. .+.....|+++++.++++.+. +.+|||||++.||+.+|||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 0 000000 011124689999999986543 5799999999999999999999 9998
Q ss_pred ccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCce
Q 008678 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 320 seL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV 399 (557)
.++..... .+.+. ..+++++||+||++|.||..+++.|+.+||++ +.|+||+.+|++...|.
T Consensus 325 ~~l~~~~~-----~~~l~------------~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEKVK------------ELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHHHh------------hcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 76643210 01111 13478999999999999999999999999985 68999999999876654
No 31
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.68 E-value=1e-16 Score=135.73 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v 351 (557)
++|+++.+++ .++.++||+|++++|..+|||||+ ++|+.++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 4788999988 357899999999999999999999 999766543211 12
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
+++++||+||.+|.++..+++.|+..|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 4788999999999999999999999999 9999999999996
No 32
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.68 E-value=1.1e-16 Score=170.62 Aligned_cols=180 Identities=18% Similarity=0.195 Sum_probs=126.2
Q ss_pred ecccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCeeehhhhhhhHHH--------
Q 008678 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSAT-------- 255 (557)
Q Consensus 188 yG~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~--~~pVv~~~v~~g~~a~-------- 255 (557)
+|+|++|+.|+... .+..|.+ +| |++|.-+..+ +.++.|.++-.+|+.. ...++.+-.+......
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 259 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAE-GG-VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKDPS 259 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCcc-CC-ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeeccCCC
Confidence 58999999875332 3455666 67 8999888888 6888999998888643 2233322111100000
Q ss_pred HHH-----HHHHHHh--------CCCCCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccc
Q 008678 256 LWI-----FYWWWTY--------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 322 (557)
Q Consensus 256 l~~-----~~~l~~~--------~gy~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL 322 (557)
|-. .|-.+-. ..-...|+++++.++++++++.+|||+|++.||..+|||||+ |+|+.++
T Consensus 260 C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~l 331 (392)
T PRK07878 260 TPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSEI 331 (392)
T ss_pred CCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHHh
Confidence 000 0000000 001135899999999965556899999999999999999999 9998765
Q ss_pred cchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCc
Q 008678 323 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 323 ~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLP 398 (557)
.... .+ ..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 332 ~~~~--------~~------------~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 332 LSGE--------AL------------AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred cchh--------HH------------hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 4210 01 11358899999999999999999999999999999999999999987654
No 33
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=1.6e-16 Score=143.08 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.1
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEecChhhHhhcCCCCCcccccccccccCcc-cccchhhhhhcCchhhHHHHHHHH
Q 008678 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 271 ~ISp~ea~elLa~~-----~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPls-eL~~~l~~Llkdp~~L~~~L~alG 344 (557)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+........ ..++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~----------~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKP----------GVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhh----------cccc
Confidence 58999999999653 46899999999999999999999 99975 3432211000 0011
Q ss_pred HhhhcccCCCCeEEEEeC-CChHHHHHHHHHHHh------------cCCceEEecccHHHHH
Q 008678 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (557)
Q Consensus 345 I~~Lk~v~kd~~VIVyC~-sG~RSa~AA~~L~~l------------Gf~nVyvLdGGi~aWk 393 (557)
.+++++|||||. +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 358999999997 999999999999985 9999999999999984
No 34
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.67 E-value=1.9e-16 Score=167.70 Aligned_cols=109 Identities=27% Similarity=0.361 Sum_probs=90.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
.|+++++.+++++ +.+|||+|++.||..+|||||+ |+|+..+......+ +
T Consensus 4 ~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~------ 53 (376)
T PRK08762 4 EISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L------ 53 (376)
T ss_pred eeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c------
Confidence 5899999999853 5899999999999999999999 99976554322111 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCCcchhh
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALT 409 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~~~~le 409 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+|||.+|++.|+|++........+
T Consensus 54 ~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~~ 112 (376)
T PRK08762 54 PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDEQ 112 (376)
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHHH
Confidence 14789999999999999999999999999999999999999999999998865543333
No 35
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=1.6e-16 Score=177.96 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=101.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCccccc---chhhhhhcCchhhHHHHHHHHHh
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~---~~l~~Llkdp~~L~~~L~alGI~ 346 (557)
-.|+++++.++++ +++++|||+|++++|..||||||+ ++|+.... .....++++++++++.+..+|++
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3589999999995 567999999999999999999999 77754321 11234566678899999999884
Q ss_pred hhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCC
Q 008678 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 347 ~Lk~v~kd~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~ 404 (557)
++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|+.+|+|+++..+
T Consensus 80 ------~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 80 ------PDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred ------CCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 8999999999874 888999999999999999999999999999999977543
No 36
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.66 E-value=1.9e-16 Score=135.37 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 008678 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~s 363 (557)
+++.+|||+|++.+|..+|||||+ |+|+..+.... ..++ .++. .+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~-------~~~~----~~~~-----~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRS-------QELQ----ALEA-----PGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCH-------HHHH----Hhhc-----CCCCCCEEEEeCC
Confidence 457899999999999999999999 88876543211 1111 1111 2578999999999
Q ss_pred ChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 364 G~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
|.++..+++.|+.+||++|++|+||+.+|++
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 37
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.66 E-value=1.3e-16 Score=142.26 Aligned_cols=103 Identities=26% Similarity=0.337 Sum_probs=81.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHh-hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~-~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
||++++.++++++++.++||||++.||. .+|||||+ |+|+.++.... .+..... .+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~~-~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFLA-ELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHHH-HHHhh-------
Confidence 6899999999765679999999999999 99999999 89877654210 1111111 11111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
.+++++||+||++|.||..+++.|+.+||++++.|.||+.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 24789999999999999999999999999999999999999975
No 38
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.7e-16 Score=135.55 Aligned_cols=94 Identities=32% Similarity=0.508 Sum_probs=80.4
Q ss_pred HHhCCCCcEEEEecChhhHhhcCCCC-CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEE
Q 008678 280 LLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVI 358 (557)
Q Consensus 280 lLa~~~~avLIDVRsp~Ef~~GHIPG-Ai~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VI 358 (557)
.+...++.+|||||++.||..+|||| ++ ++|+.++........ .++++++|
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~iv 65 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPIV 65 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeEE
Confidence 33345689999999999999999999 88 999888765322110 24799999
Q ss_pred EEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceec
Q 008678 359 VMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 359 VyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~ 401 (557)
+||++|.||..++..|+.+||++++++.||+.+|...++|+..
T Consensus 66 v~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 66 VYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999875
No 39
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.66 E-value=1.9e-16 Score=135.19 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.5
Q ss_pred CCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeC
Q 008678 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (557)
Q Consensus 283 ~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~ 362 (557)
++++++|||+|++.||..+|||||+ ++|+..+...... .+ .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999999 8987654321000 00 135889999999
Q ss_pred CChH--HHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 363 sG~R--Sa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
+|.+ |..+++.|+..||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9986 6899999999999999999999999973
No 40
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.62 E-value=8.9e-16 Score=135.32 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=78.4
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 271 ~ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
.|+++++.+++..+ ++.+|||+|++ ||..+|||||+ ++|+.++......+ ....+.
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc----
Confidence 58999999998654 45789999999 99999999999 99987665433221 111121
Q ss_pred ccCCCCeEEEEeC-CChHHHHHHHHHHH--------hcCCceEEecccHHHHHHc
Q 008678 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 350 ~v~kd~~VIVyC~-sG~RSa~AA~~L~~--------lGf~nVyvLdGGi~aWkaa 395 (557)
+++++||+||. +|.|+..++..|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 36789999998 67889888887754 4999999999999999864
No 41
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.60 E-value=5.1e-16 Score=160.79 Aligned_cols=184 Identities=21% Similarity=0.247 Sum_probs=136.9
Q ss_pred eEEEee--cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC-CCCeeehhhhhhhHHHHH
Q 008678 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (557)
Q Consensus 183 ~~~~~y--G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~-~~pVv~~~v~~g~~a~l~ 257 (557)
-+||-| ||||||++|++++ ++.+|.+ .| |++|+.+.++ +++|+|.++-+.|+.+ -+|.++ ++.|..+-+.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r 270 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFR 270 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeE
Confidence 456666 8999999999998 9999999 77 9999999999 7999999999998763 345553 3444333211
Q ss_pred HHHHHHHh------------------------CCC----------CCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCC
Q 008678 258 IFYWWWTY------------------------GGY----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 303 (557)
Q Consensus 258 ~~~~l~~~------------------------~gy----------~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHI 303 (557)
.+-++-+. ..+ ..+||..++++++++.+..+|||||++.||+..|.
T Consensus 271 ~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~l 350 (427)
T KOG2017|consen 271 TIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRL 350 (427)
T ss_pred EEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEec
Confidence 11111000 000 12578889999998778899999999999999999
Q ss_pred CCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCC-ce
Q 008678 304 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RA 382 (557)
Q Consensus 304 PGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~-nV 382 (557)
|+|+ |||+.++....++... | +......+|+++|+.|+.|+++++.|+...+. .+
T Consensus 351 P~av--------NIPL~~l~~~~~~~~~------------~----~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~v 406 (427)
T KOG2017|consen 351 PEAV--------NIPLKELRSRSGKKLQ------------G----DLNTESKDIFVICRRGNDSQRAVRILREKFPDSSV 406 (427)
T ss_pred cccc--------ccchhhhhhhhhhhhc------------c----cccccCCCEEEEeCCCCchHHHHHHHHhhCCchhh
Confidence 9999 9999988765431110 0 00124578999999999999999999976654 67
Q ss_pred EEecccHHHHHHc
Q 008678 383 FLVQGGFQSWVKE 395 (557)
Q Consensus 383 yvLdGGi~aWkaa 395 (557)
+-+.||+.+|...
T Consensus 407 rDvigGl~~w~~~ 419 (427)
T KOG2017|consen 407 RDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhHHHHHHHh
Confidence 7788999999874
No 42
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.59 E-value=2.3e-15 Score=124.05 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=72.7
Q ss_pred HHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCe
Q 008678 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~ 356 (557)
+.+++. .++.++||+|++.+|..+|||||+ ++|+..+.... ...+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhhc------cCCCCe
Confidence 345553 568999999999999999999999 88876544321 0011 358899
Q ss_pred EEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008678 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 357 VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWk 393 (557)
||+||..|.++..+++.|+..||+++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 43
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.59 E-value=9.5e-16 Score=161.56 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=117.0
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCeeehhhhhhhHHHHHHHHHHHH
Q 008678 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~--~~pVv~~~v~~g~~a~l~~~~~l~~ 264 (557)
|||++|++|+..+ ....|.. +| |++|.-+..+ ++++.|.++-.+|+.+ ...++.+-.+.. .+-. +.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~---~~~~--~~~~ 237 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQ-AG-VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGYYDSLDG---TWEY--IPVV 237 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccc-cC-cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEEEECCCC---eEEE--Eecc
Confidence 5899999887543 2334555 66 8899988888 6888899988888643 233432211110 0000 0000
Q ss_pred hC------------------CCCCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchh
Q 008678 265 YG------------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 326 (557)
Q Consensus 265 ~~------------------gy~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l 326 (557)
.+ +....++++++.++. ++.+|||+|+++||+.+|||||+ |+|+.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~ 306 (355)
T PRK05597 238 GNPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGA 306 (355)
T ss_pred CCCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcc
Confidence 00 111246677777543 46899999999999999999999 99987654321
Q ss_pred hhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 327 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 327 ~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
... ..+++++||+||++|.||..+++.|+..||++|++|+||+.+|++
T Consensus 307 ~~~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 NPP--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ccc--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 100 124788999999999999999999999999999999999999976
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.59 E-value=3.3e-15 Score=131.93 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=74.5
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008678 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 271 ~ISp~ea~elLa~~-----~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI 345 (557)
.|+++++++++.++ ++.+|||||++ ||..+|||||+ |+|+..+......++ ..+..
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhhh
Confidence 58999999999654 46899999999 99999999999 999877654332221 11111
Q ss_pred hhhcccCCCCeEEEEeCC-ChHHHHHHHHHH----HhcC--CceEEecccHHHHH
Q 008678 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (557)
Q Consensus 346 ~~Lk~v~kd~~VIVyC~s-G~RSa~AA~~L~----~lGf--~nVyvLdGGi~aWk 393 (557)
.+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 256799999997 578888776544 3475 78999999999996
No 45
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.7e-15 Score=152.95 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=99.4
Q ss_pred ccCHHHHHHHHhCC----CCcEEEEecCh--hhHhhcCCCCCcccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 008678 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~ea~elLa~~----~~avLIDVRsp--~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llkdp~~L~~~L~ 341 (557)
.++++++.+.+... .++.+++.+.. .+|..+|||||+ .+++...... ...++++++++.+++.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 58899999888421 25666666665 899999999999 5555443222 3578889999999999
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCCc
Q 008678 342 AAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (557)
Q Consensus 342 alGI~~Lk~v~kd~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~~ 405 (557)
++||+ +|++||+|+..+. .+.+++|+|+.+|+++|++|+||+.+|+++|+|++...+.
T Consensus 84 ~~GI~------~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 84 ELGIR------NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HcCCC------CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 99995 8999999997655 8899999999999999999999999999999999975554
No 46
>PRK01415 hypothetical protein; Validated
Probab=99.58 E-value=5.8e-15 Score=148.91 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=83.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
.|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+..... .++. ...
T Consensus 113 ~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~-------~~~~---------~~~ 167 (247)
T PRK01415 113 YIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPA-------WVQQ---------NQE 167 (247)
T ss_pred ccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHH-------HHhh---------hhh
Confidence 599999999995 578999999999999999999999 999776543111 1100 001
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaG 396 (557)
.+++++|++||.+|.||..++..|+++||++||.|+||+.+|.+..
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 3588999999999999999999999999999999999999998744
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.57 E-value=4.3e-15 Score=130.66 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008678 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG 364 (557)
....+||+|+++||..+|||||+ |+|+.++.....++. .+++++||+||.+|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 35789999999999999999999 999876644322211 13678999999999
Q ss_pred hHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
.||..++..|+.+||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999986 99999975
No 48
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=147.53 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=82.6
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 008678 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~ea~elLa~~-----~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alG 344 (557)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.....++ .+.+
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l-------~~~~---- 170 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEAL-------AAHR---- 170 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHH-------Hhhh----
Confidence 469999999988642 34799999999999999999999 99987765432211 1100
Q ss_pred HhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 345 I~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
. ..++++|++||.+|.|+..++..|+..||++|+.|+||+.+|.+
T Consensus 171 ----~-~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 171 ----A-DLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred ----h-hcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 0 12689999999999999999999999999999999999999987
No 49
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.54 E-value=1.4e-14 Score=128.26 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=67.4
Q ss_pred CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008678 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG 364 (557)
..-+|||+|+++||+.+|||||+ |+|+.++...... ++ .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~--------------l~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIAT--------------AV------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHh--------------cC------CCCCCeEEEEeCCC
Confidence 45689999999999999999999 9997665432221 11 13678999999999
Q ss_pred hHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
.||..+++.|.++||+++++ .||+.+|..
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.52 E-value=3.8e-14 Score=147.49 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=83.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk 349 (557)
..++++++.++++ +++.+|||||++.||..||||||+ |+|+..+..... .+.+ .++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~-------~l~~---~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPP-------WVEE---NLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHH-------HHHH---hcC-----
Confidence 3699999999985 567999999999999999999999 999877653211 1111 111
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..++++||+||.+|.|+..++..|+.+||++|++|+|||.+|..
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 24789999999999999999999999999999999999999987
No 51
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.50 E-value=1.8e-14 Score=152.83 Aligned_cols=168 Identities=19% Similarity=0.227 Sum_probs=114.6
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCeeehhhhhhhHHHHHHHHHHHH
Q 008678 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~--~~pVv~~~v~~g~~a~l~~~~~l~~ 264 (557)
++|++|++|+..+ .+..|.. +| |++|..+..+ ++++.|.++-.+|+.+ ...++.+-.+. ..+..+- +.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~-~g-vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~~d~~~---~~~~~~~--~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCAT-AG-VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLSYDALT---ATTRSFR--VG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCcc-CC-cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCC---CEEEEEE--ec
Confidence 5799999987532 2334533 56 8899989888 6888999998888743 24454321111 1100000 00
Q ss_pred hC-----------CC-CCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCC---CCcccccccccccCcccccchhhhh
Q 008678 265 YG-----------GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKL 329 (557)
Q Consensus 265 ~~-----------gy-~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIP---GAi~a~~~~~~nIPlseL~~~l~~L 329 (557)
.+ .| .-.++++++.+++++ ++++|||||++.||+.+||| ||+ |+|+.++......
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~- 323 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADI- 323 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhh-
Confidence 00 01 125899999999854 46799999999999999998 588 9998877532100
Q ss_pred hcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCc-eEEecccHH
Q 008678 330 LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (557)
Q Consensus 330 lkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~n-VyvLdGGi~ 390 (557)
+.. +...+++ +|||||++|.||..++..|+.+||++ |++|+|||.
T Consensus 324 ------~~~---------l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 324 ------LHA---------LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ------hhh---------ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 000 0112344 99999999999999999999999996 999999975
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.43 E-value=6.1e-13 Score=120.33 Aligned_cols=106 Identities=21% Similarity=0.256 Sum_probs=74.6
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhh--------hhhcCchhhHHHHH
Q 008678 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK--------KLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~ea~elLa~~-~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~--------~Llkdp~~L~~~L~ 341 (557)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+..+.. .++.+++. ...+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l- 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPED-RDRL- 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHH-HHHH-
Confidence 48999999999654 57999999999999999999999 888765321100 01111111 1111
Q ss_pred HHHHhhhcccCCCCeEEEEeCCChH---------HHHHHHHHHH--hcCCceEEecccHHHHHH
Q 008678 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 342 alGI~~Lk~v~kd~~VIVyC~sG~R---------Sa~AA~~L~~--lGf~nVyvLdGGi~aWka 394 (557)
. . .++++|||||.++.+ +..+++.|.. .|+.+|++|+||+.+|++
T Consensus 71 --~-----~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 --R-----R-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred --h-----c-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 1 1 157899999998865 5555566666 366899999999999976
No 53
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.42 E-value=5.4e-13 Score=140.55 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccch--hhh---------------hhcCchh
Q 008678 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKK---------------LLRGGRE 335 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--l~~---------------Llkdp~~ 335 (557)
...++.+++. ++.+|||||+|.||..||||||+ |+|+.....+ .+. .+.++ .
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~-~ 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAG-N 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcch-h
Confidence 4566777663 47899999999999999999999 9997543211 111 11111 1
Q ss_pred hHHHHHHHHHhhhccc-CCCCeEEEEe-CCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceec
Q 008678 336 LDDTLTAAVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 336 L~~~L~alGI~~Lk~v-~kd~~VIVyC-~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~ 401 (557)
+.+.+... +... .++++||+|| ++|.||..+++.|..+|| ++++|+||+.+|++.+++...
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 22211111 0111 2788999999 578999999999999999 599999999999998875544
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.38 E-value=1.2e-12 Score=136.20 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=73.8
Q ss_pred CcEEEEecChhhHhhcCCCCCcccccccccccCcccccch--hhhhhcCc--------------hhhHHHHHHHHHhhhc
Q 008678 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG--------------RELDDTLTAAVIRNLK 349 (557)
Q Consensus 286 ~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--l~~Llkdp--------------~~L~~~L~alGI~~Lk 349 (557)
+.+|||||+|.||..||||||+ |+|+.....+ .+.+.+.. ..+.+.+..+. +
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~----~ 69 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWR----A 69 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHH----h
Confidence 4689999999999999999999 9997533221 12111110 01112122110 1
Q ss_pred ccCCCCeEEEEe-CCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCceecc
Q 008678 350 IVQDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (557)
Q Consensus 350 ~v~kd~~VIVyC-~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~ 402 (557)
..+++.+||+|| ++|.||..+++.|+.+|| ++++|+||+.+|+..+++....
T Consensus 70 ~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 70 FADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred hcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 123455699999 578999999999999999 6999999999999999877653
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.00 E-value=1e-09 Score=112.15 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=94.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEec---------ChhhHhhcCCCCCcccccccccccCccccc---chhhhhhcCchhhHH
Q 008678 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDD 338 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVR---------sp~Ef~~GHIPGAi~a~~~~~~nIPlseL~---~~l~~Llkdp~~L~~ 338 (557)
-++++.+.+++.+ .+.+|||.- ...||..-|||||. ++.++... ...+.+++.++.+++
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~--------~fdld~~~~~s~~~~~~lp~~e~Fa~ 76 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS--------HFDLDIISYPSSPYRHMLPTAEHFAE 76 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce--------eeeccccccCCCcccccCccHHHHHH
Confidence 4788888888853 679999983 24578888999997 44333321 233455665667777
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeC--CCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCceeccCC
Q 008678 339 TLTAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 339 ~L~alGI~~Lk~v~kd~~VIVyC~--sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaGLPV~~~~~ 404 (557)
-...+|+. +++.+|||++ .|+ .|.+++|.++..|+++|++|+||+.+|+.+|+|+...+.
T Consensus 77 y~~~lGi~------n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 77 YASRLGVD------NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred HHHhcCCC------CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 77778874 8899999999 787 789999999999999999999999999999999988664
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.96 E-value=8.7e-10 Score=120.93 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCcEEEEecChhhHhhcCCCC----CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEE
Q 008678 285 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 360 (557)
Q Consensus 285 ~~avLIDVRsp~Ef~~GHIPG----Ai~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVy 360 (557)
++++|||||+++||+.+|||| |+ |+|+.++..... .+++++++|+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~----------------------~l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFG----------------------DLDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHh----------------------hcCCCCeEEEE
Confidence 578999999999999999999 88 999876643211 12478899999
Q ss_pred eCCChHHHHHHHHHHHhcCCceEEecc
Q 008678 361 DADGTRSKGIARSLRKLGVMRAFLVQG 387 (557)
Q Consensus 361 C~sG~RSa~AA~~L~~lGf~nVyvLdG 387 (557)
|++|.||..++..|+.+||+||++|.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998864
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.94 E-value=3.3e-09 Score=108.53 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcCCCCCCCeeehhhhhhhHHHHHH--HHHHHHhCCC------------------C---C----------
Q 008678 224 VSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGY------------------S---G---------- 270 (557)
Q Consensus 224 ~~~ale~l~~~lG~~~~~pVv~~~v~~g~~a~l~~--~~~l~~~~gy------------------~---g---------- 270 (557)
.+..|+.-.+.+|+++++.+|+|.-. ..+.+++ +||.|+.-|+ . .
T Consensus 70 ~~e~Fa~y~~~lGi~n~d~vViYd~~--~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~ 147 (286)
T KOG1529|consen 70 TAEHFAEYASRLGVDNGDHVVIYDRG--DGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIV 147 (286)
T ss_pred cHHHHHHHHHhcCCCCCCeEEEEcCC--CcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccccCCCCCcc
Confidence 35667888899999999999753222 1333333 5776554222 1 0
Q ss_pred ---ccCHHHHHHHHh------CCCCcEEEEecChhhHh-----------hcCCCCCcccccccccccCcccccchhhhhh
Q 008678 271 ---DLSPKSTLELLR------GKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (557)
Q Consensus 271 ---~ISp~ea~elLa------~~~~avLIDVRsp~Ef~-----------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Ll 330 (557)
.++...+..+-+ ...+...+|.|...+|. .||||||+ |+|+.++-..-+.+.
T Consensus 148 ~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k 219 (286)
T KOG1529|consen 148 FVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIK 219 (286)
T ss_pred chhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccC
Confidence 111211111110 12468999999998883 57999999 999998876655444
Q ss_pred cCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 331 RGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 331 kdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
+ +++++..+...|+. .++++|+-|..|..+...+-.|.+.| .++.+|+|+|.+|.-
T Consensus 220 ~-~edl~~~f~~~~l~------~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 220 P-AEDLKHLFAQKGLK------LSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred C-HHHHHHHHHhcCcc------cCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 4 78888888888874 68999999999999999999999999 789999999999975
No 58
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.86 E-value=2.3e-09 Score=110.29 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=80.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
-|+|+++.+++. +++.++||+|..-||.-||-.||+ +.+...|.+...+ +++.. .
T Consensus 114 yl~p~~wn~~l~-D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~-------v~~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELLS-DPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAW-------VEENL---------D 168 (308)
T ss_pred ccCHHHHHHHhc-CCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHH-------HHHHH---------H
Confidence 488999999995 688999999999999999999999 7666655543222 11111 0
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..++++|+.||.+|.|-..+...|...||++||.|+||+-.+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 12677999999999999999999999999999999999988765
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=2.1e-07 Score=97.15 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=73.3
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 008678 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~ea~elLa~~-----~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alG 344 (557)
..|||+.++.++++. ...+|||+|-|-||..|||+||+ |++..+...... +.++ +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f-~~~~-----------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF-LLKD-----------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh-cccc-----------c
Confidence 469999999999642 13679999999999999999999 887554332211 0000 0
Q ss_pred HhhhcccCCCCeEEEEeCCC-hHHHHHHHHHHH------------hcCCceEEecccHHHHHHc
Q 008678 345 IRNLKIVQDRSKVIVMDADG-TRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 345 I~~Lk~v~kd~~VIVyC~sG-~RSa~AA~~L~~------------lGf~nVyvLdGGi~aWkaa 395 (557)
. +...+...+||||..- .|...+|+.|+. +-|..+|+|+||+..|-..
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0 0011346789999754 488999999983 3456899999999999764
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.11 E-value=0.00089 Score=70.17 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=69.5
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 008678 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~ea~elLa~~-----~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alG 344 (557)
.+|+++.+++++++. -+.+|||.|-+-||..|||-+|+ ||.-.+ .++.. +
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~----------F---- 296 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLL----------F---- 296 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHH----------H----
Confidence 479999999998643 24679999999999999999999 764221 11111 1
Q ss_pred HhhhcccCCCCeEEEEeCC-ChHHHHHHHHHHHh------------cCCceEEecccHHHHHH
Q 008678 345 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 345 I~~Lk~v~kd~~VIVyC~s-G~RSa~AA~~L~~l------------Gf~nVyvLdGGi~aWka 394 (557)
+. |.+..-.-+||+|.. ..|+...|..|+.. =|..||+|+||+...-.
T Consensus 297 ~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 00 111235679999975 45999999888643 24689999999987654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=93.77 E-value=0.095 Score=54.90 Aligned_cols=95 Identities=24% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCcEEEEecChhhHhhcCCCCCcccccccccccCccccc--chhhhhhcC-c--------------hhhHHHHHHHHHhh
Q 008678 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKKLLRG-G--------------RELDDTLTAAVIRN 347 (557)
Q Consensus 285 ~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~--~~l~~Llkd-p--------------~~L~~~L~alGI~~ 347 (557)
.+..|||||.|-||..||.|++. |+|.-.-. ...+.-.+- . +-...++.+..
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask--- 82 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK--- 82 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 36789999999999999999999 77632111 111111110 0 00111222221
Q ss_pred hcccCCCCeEEEEeCCC-hHHHHHHHHH-HHhcCCceEEecccHHHHH
Q 008678 348 LKIVQDRSKVIVMDADG-TRSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 348 Lk~v~kd~~VIVyC~sG-~RSa~AA~~L-~~lGf~nVyvLdGGi~aWk 393 (557)
....+.++-++|..| .||...+..| ...|++ .--+.||+.+.+
T Consensus 83 --~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 83 --AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred --HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 123456777778655 5999999999 677875 334569986544
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.40 E-value=0.15 Score=46.09 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCC------cccccccccccCcccccchhhhhhcCchhhHHHHHH
Q 008678 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGA------i~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~a 342 (557)
.+.++++++.++-+. +=-.||+.|+..|- .+-|.. ....-..|.++|+..-. + .++.++...+.
T Consensus 12 s~Q~~~~d~~~la~~-GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~--~-----~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQ-GFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDGGA--I-----TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHHC-T--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----TTT---------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC-CCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCCCC--C-----CHHHHHHHHHH
Confidence 357999999988753 33579999987653 222221 11122345577754211 1 11222222111
Q ss_pred HHHhhhcccCCCCeEEEEeCCChHHHHHHHH
Q 008678 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~ 373 (557)
+. ...+||.+||++|.|+...|.+
T Consensus 82 l~-------~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 LE-------SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HH-------TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HH-------hCCCCEEEECCCChhHHHHHHH
Confidence 11 2357999999999999755543
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=92.39 E-value=0.56 Score=43.32 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=58.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCc------ccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi------~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~al 343 (557)
+.++++++..+.+ .+=-.+||.|++.|... -|... ...-..+.++|+.. ... +++.+....+.+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5789999987653 33468999999877432 22210 00122344666432 111 122222211111
Q ss_pred HHhhhcccCCCCeEEEEeCCChHHHHHHHHH-HHhcCCceEEecccHHHHHHcCCceec
Q 008678 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 344 GI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~L-~~lGf~nVyvLdGGi~aWkaaGLPV~~ 401 (557)
. ..+.+|++||++|.|+..+|.++ ...|...--+ +..=++.|+.++.
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 24689999999999987766543 3446532111 2233556666653
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=89.98 E-value=1.2 Score=41.93 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=44.5
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEecChhhHhhcC---CCCCcccccccccccCcccccch-------------------
Q 008678 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPEVGGS------------------- 325 (557)
Q Consensus 268 y~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GH---IPGAi~a~~~~~~nIPlseL~~~------------------- 325 (557)
....+|+++...+.+ -.=-.+||.|++.|..+.. ++|.. +.++|+..-...
T Consensus 26 ~l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~g~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
T PF13350_consen 26 NLSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLIDGVQ------YVHIPIFGDDASSPDKLAELLQSSADAPRGM 98 (164)
T ss_dssp --TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----TT-E------EEE--SS-S-TTH----------HHHHHHHH
T ss_pred CcCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcCCce------eeeecccccccccccccccccccccchhhHH
Confidence 345789998877663 3335899999999987652 33332 223442211100
Q ss_pred ---hhhhhcC-chhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHH-HHHHHHHhcCC
Q 008678 326 ---VKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKG-IARSLRKLGVM 380 (557)
Q Consensus 326 ---l~~Llkd-p~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~-RSa~-AA~~L~~lGf~ 380 (557)
...++.. .+.+.++|..+-- ...+++|||..|. |+-. +|-.|..+|..
T Consensus 99 ~~~Y~~~~~~~~~~~~~~~~~l~~-------~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 99 LEFYREMLESYAEAYRKIFELLAD-------APGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH--------TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcc-------CCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 1112222 3444444443321 2369999999998 6655 44556777875
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.08 E-value=0.21 Score=56.47 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=61.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~ 350 (557)
+|+++++..+ +...++|.|...||.++|+++++ |+|...-++...++..- .++.
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l----------~~~~---- 676 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFL----------PGIV---- 676 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcc----------hHhH----
Confidence 4666665544 35679999999999999999999 99977333333322211 0111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHH
Q 008678 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 351 v~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aW 392 (557)
......++++......+......+..+-+.+..++.+|++..
T Consensus 677 ~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 677 CSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred HhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 114556666655555555555556666677888889988843
No 66
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=86.55 E-value=0.094 Score=44.74 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=31.6
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCC
Q 008678 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~ 237 (557)
+|||||++|+..+....|.+ .| |++++-+..+ +.++.|.++-.+|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~-~G-Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAE-AG-VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSST-S--B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccc-cc-cccchHHHHH-HHHHHHHHHHHHhc
Confidence 69999999999666667777 67 8888888888 67888888877775
No 67
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=84.12 E-value=1.7 Score=40.29 Aligned_cols=71 Identities=13% Similarity=-0.026 Sum_probs=39.6
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCCCCCeeehhhh-hhhHHHHHHHHHHHHhCC
Q 008678 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVF-LGTSATLWIFYWWWTYGG 267 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~~~pVv~~~v~-~g~~a~l~~~~~l~~~~g 267 (557)
||++.....++.+.++. .+....+... ...|+.+.+.+|++++++||+|.-. .++..+. -+||.+++.|
T Consensus 53 GHIPgAv~~~~~~~~~~----~~~~~~~~p~-----~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~-r~~~~l~~~G 122 (138)
T cd01445 53 GHIPGASFFDFEECLDE----AGFEESMEPS-----EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTAC-HIALAARLCG 122 (138)
T ss_pred CcCCCCEeeCHHHhhCc----CCCCCCCCCC-----HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHH-HHHHHHHHcC
Confidence 89998887776654322 1211111111 2346777788899999999865321 0121222 2467777766
Q ss_pred CC
Q 008678 268 YS 269 (557)
Q Consensus 268 y~ 269 (557)
+.
T Consensus 123 ~~ 124 (138)
T cd01445 123 HP 124 (138)
T ss_pred CC
Confidence 64
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.33 E-value=0.15 Score=53.71 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccchhhhhh
Q 008678 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (557)
Q Consensus 268 y~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Ll 330 (557)
|..--+|+++.+.+.. ....+|+|.+..|..+||||++ ++|...+....+++.
T Consensus 12 f~~i~~~~~~~~~l~~--~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHLA--LCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHHH--HHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 3334568888887753 5789999999999999999999 999877766666554
No 69
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=79.39 E-value=4 Score=33.10 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=29.2
Q ss_pred hhhhhhchhhhhhHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008678 428 QFLGFGVGCFAVLYVLLEWEKTLQFIGVIGLGQTIYRRVASYNDAEDFK 476 (557)
Q Consensus 428 ~llG~~~G~~~~~~a~~~~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~ 476 (557)
+++|+++.+.+... ...+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~~~-~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGLLG-LFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHHHh-cccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 44554444332222 22222445 89999998888 999999988876
No 70
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=76.51 E-value=6.5 Score=38.42 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=35.2
Q ss_pred EEEecChhhHhhcCCCCCcc---cccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh
Q 008678 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (557)
Q Consensus 289 LIDVRsp~Ef~~GHIPGAi~---a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI~~Lk~v~kd~~VIVyC~sG~ 365 (557)
+|=.-+..|+.+-++|+-.. ..-..|.++|+.+.... +.....+++..+.. .+..+++|++||.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~~----~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELAA----RLENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHHH----HHHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHHH----HHHcCCEEEEECCCCC
Confidence 44466777777777775421 11234557776654321 11122222222211 1237889999999986
Q ss_pred -HHHH-HHHHHHHhc
Q 008678 366 -RSKG-IARSLRKLG 378 (557)
Q Consensus 366 -RSa~-AA~~L~~lG 378 (557)
|+.. +|..|..+|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 7755 566666766
No 71
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.21 E-value=0.64 Score=49.57 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=68.7
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCeeehhhhhhhHH------------
Q 008678 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSA------------ 254 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~--~~pVv~~~v~~g~~a------------ 254 (557)
++|++|+.++..+.-..|.+ +| |+.|..+... ++++.|.++-.+|... ...++.+..+.....
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~-~g-v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDT-AG-IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCcc-CC-cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 58999998876553334544 56 7888888777 6777888887667532 223332221111000
Q ss_pred -HH-------HHHHH------HHHh-------CCCCCccCHHHHHHHHhC-----CCCcEEEEecChhhHhhcCCCCCc
Q 008678 255 -TL-------WIFYW------WWTY-------GGYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 255 -~l-------~~~~~------l~~~-------~gy~g~ISp~ea~elLa~-----~~~avLIDVRsp~Ef~~GHIPGAi 307 (557)
.+ ...|- .+-. .+....++++++.++++. +.+..|||+|++. |+-.|+|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 00 00000 0100 011236899999988842 3578999999998 9999999775
No 72
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=74.12 E-value=7 Score=34.88 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.3
Q ss_pred CCCeEEEEeCCCh-HHHHH--HHHHHHhcC
Q 008678 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~A--A~~L~~lGf 379 (557)
.+++|+|||..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 5679999999997 77643 334444443
No 73
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=72.84 E-value=5.4 Score=35.01 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008678 446 WEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLL 483 (557)
Q Consensus 446 ~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l 483 (557)
...+++++|+.=.+.+.++.++..++|+++.+.++.+-
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k 85 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLK 85 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHH
Confidence 56778999999999999999999999999999998653
No 74
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=72.14 E-value=3.3 Score=43.37 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=54.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCcccccccccccCcccccch--------hhhhhcCchhhHHHHHHH
Q 008678 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--------VKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--------l~~Llkdp~~L~~~L~al 343 (557)
+|.+++.+.+. .++.+++|.|+ +..||.+|+ ++-++.+..+ ++.++++....+
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~------ 66 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDK------ 66 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCccccc------
Confidence 56667777774 46799999999 566888887 4433332211 111222111110
Q ss_pred HHhhhcccC---CCCeEEEEeCCCh------HHHH----HHHHHHHhcCCceEEecccHHHHHH
Q 008678 344 VIRNLKIVQ---DRSKVIVMDADGT------RSKG----IARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~Lk~v~---kd~~VIVyC~sG~------RSa~----AA~~L~~lGf~nVyvLdGGi~aWka 394 (557)
..+ +...+|.|+.+.. .+.. .-+.++..|+ .+|.|.|||...+.
T Consensus 67 ------~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 67 ------RFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ------cccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 001 2357889987621 1111 2244566787 58999999986654
No 75
>PLN02777 photosystem I P subunit (PSI-P)
Probab=70.39 E-value=4.7 Score=39.16 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcc
Q 008678 446 WEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLLA 484 (557)
Q Consensus 446 ~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~ 484 (557)
...+||++|+.=.|++.++.|++.++|++|+++++++-.
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~ 161 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYK 161 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999997643
No 76
>PLN02806 complex I subunit
Probab=60.25 E-value=9.8 Score=32.86 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.9
Q ss_pred hhhhhhhchhhhhh---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008678 427 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 487 (557)
Q Consensus 427 l~llG~~~G~~~~~---------~a~~~~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~p~~ 487 (557)
..++|+++|+..-+ |.-.||+..+ +.|+|..|.+.+-.+| .++.+||.+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35677777766543 4457899998 7889999998888876 568899988776655
No 77
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=57.85 E-value=12 Score=35.15 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCeEEEEe-C----CChHHHHHHHHHHHhcCCceEEecccHHHH
Q 008678 353 DRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 353 kd~~VIVyC-~----sG~RSa~AA~~L~~lGf~nVyvLdGGi~aW 392 (557)
++.+++++| . .|..-..++..|+.+|..++.+||||-...
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 455666665 4 367778899999999999999999997643
No 78
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=56.13 E-value=34 Score=36.33 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEecChhhHhh---cCCC
Q 008678 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRsp~Ef~~---GHIP 304 (557)
.+...++.+.+++ .++.+||+|+..+|+. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 3567788888853 4789999999999997 8888
No 79
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=69 Score=36.52 Aligned_cols=106 Identities=24% Similarity=0.374 Sum_probs=63.7
Q ss_pred hhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhccccccCcCCCCccccc---
Q 008678 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (557)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--- 148 (557)
+..+..++-++..|+--++..--+ |.=|.+.||++|.-+ |.|++.+ +-| .++-.+|-. ++.|.++-+||
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~--eiA-~~LcEsV~a--~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAA--EIA-EKLCESVAA--SLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhH--HHH-HHHHHHHHH--HhhhcccccchHHH
Confidence 445556777777777644433333 445777788877643 3344322 111 223333322 56777777775
Q ss_pred hhhHHHhhhc------cchhhhhhhhhHHhhhhhhccCcceEEEeec
Q 008678 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG 189 (557)
Q Consensus 149 ~~l~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG 189 (557)
+..|+|...+ +..+||.||.-+.+=+ +.+|||+-.-|
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~----~krPYVi~fvG 385 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARR----RKRPYVISFVG 385 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh----cCCCeEEEEEe
Confidence 4555555443 7799999996665544 45999988877
No 80
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=53.61 E-value=11 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEeCCCh-HHHHHHHHHHHh----cCCceEEecccHHHH
Q 008678 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RSa~AA~~L~~l----Gf~nVyvLdGGi~aW 392 (557)
|+|+|.+.. ||..+...|+.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998765 998888888887 777899999998766
No 81
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=52.66 E-value=2.4 Score=39.62 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhh
Q 008678 87 ESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSR 128 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (557)
+.|...+....+.+...++.+...+.+.+...+..++..+..
T Consensus 41 ~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 82 (202)
T PF01442_consen 41 ERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTSE 82 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 82
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=52.63 E-value=26 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCCCeEEEEeCCCh-HHHH--HHHHHHHhcCC
Q 008678 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (557)
Q Consensus 352 ~kd~~VIVyC~sG~-RSa~--AA~~L~~lGf~ 380 (557)
..+.+|+|||..|. ||.. +++++...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 36789999999996 7754 34455566653
No 83
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=51.06 E-value=31 Score=30.65 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCCh-HHHH--HHHHHHHhcCC
Q 008678 353 DRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~--AA~~L~~lGf~ 380 (557)
++.+|+|+|..|. ||.. +++++...|.+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 6789999999997 7654 33445556654
No 84
>PLN02727 NAD kinase
Probab=49.41 E-value=31 Score=41.85 Aligned_cols=92 Identities=11% Similarity=0.170 Sum_probs=48.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCC----CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008678 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPG----Ai~a~~~~~~nIPlseL~~~l~~Llkdp~~L~~~L~alGI 345 (557)
+.++|+++.++.+ .+=-.||+.|+..|- .+..+- +....-..+.++|+..... +.++.+++..+.+.-
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHHHh
Confidence 5799999988764 223479999997772 222211 1111223455777543221 112333332222100
Q ss_pred hhhcccCCCCeEEEEeCCCh-HH-HHHHHHHH
Q 008678 346 RNLKIVQDRSKVIVMDADGT-RS-KGIARSLR 375 (557)
Q Consensus 346 ~~Lk~v~kd~~VIVyC~sG~-RS-a~AA~~L~ 375 (557)
...+||++||++|. |+ ..+|..|.
T Consensus 339 ------slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hcCCCEEEECCCCCchHHHHHHHHHH
Confidence 14689999999998 43 33444443
No 85
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=44.68 E-value=23 Score=32.19 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.9
Q ss_pred EEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008678 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aW 392 (557)
|+|+|.+.. ||..+...|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578998665 999888888877655688888888776
No 86
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=44.06 E-value=72 Score=36.02 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=19.5
Q ss_pred cEEEEecChhhHhhcCCCCCc
Q 008678 287 AVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 287 avLIDVRsp~Ef~~GHIPGAi 307 (557)
..+||.|+.++|..||...|.
T Consensus 327 FFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEeccchhhcccccchhhh
Confidence 579999999999999998886
No 87
>PRK08223 hypothetical protein; Validated
Probab=43.05 E-value=13 Score=39.12 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=11.8
Q ss_pred eEEEeecccCCCCCcc
Q 008678 183 FVVYYYGTTKESLPPE 198 (557)
Q Consensus 183 ~~~~~yG~~~~~lpp~ 198 (557)
++++..||||+|++|.
T Consensus 160 ~v~~p~~p~~~~~f~~ 175 (287)
T PRK08223 160 LVFDPGGMSFDDYFDL 175 (287)
T ss_pred EEEcCCCCchhhhcCC
Confidence 3444468999999876
No 88
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=41.73 E-value=41 Score=35.07 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceE
Q 008678 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVy 383 (557)
.++..+++||+.-.......+.|+..||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 47899999999999999999999999997643
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.55 E-value=35 Score=36.79 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008678 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~L~~lGf~nVyvLdGGi~aWkaaG 396 (557)
++++|+++ ..|.....++..|...|+.++.++++..-.+.+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 45677776 55667778999999999999999999876666543
No 90
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=39.69 E-value=87 Score=30.03 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=39.0
Q ss_pred hcccCCCCeEEEEeCCCh--HHHHHHHHHHH---hcCCceEEecccHHH----HHH-cCCceeccCCcchhhhhh
Q 008678 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQS----WVK-EGLRIKELKSETALTILN 412 (557)
Q Consensus 348 Lk~v~kd~~VIVyC~sG~--RSa~AA~~L~~---lGf~nVyvLdGGi~a----Wka-aGLPV~~~~~~~~leil~ 412 (557)
++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.+ .++ +...+.-.+-..|-++.+
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~lar 135 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLAR 135 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHH
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHH
Confidence 444568889999999996 78888888765 577789989898643 333 455565555555655544
No 91
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.24 E-value=47 Score=28.70 Aligned_cols=49 Identities=6% Similarity=0.199 Sum_probs=28.0
Q ss_pred chhhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhh
Q 008678 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKST 118 (557)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (557)
.|..+..+++++...+.+.....+.++.+-+++.++.++..+.++...+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665665555555555555544444333
No 92
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=35.87 E-value=67 Score=31.04 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=18.7
Q ss_pred CCCeEEEEeCCCh-HHHH--HHHHHHHhcC
Q 008678 353 DRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~--AA~~L~~lGf 379 (557)
+..+|+|+|..|. ||.. +|+.|...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 6679999999986 6644 3455655454
No 93
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.70 E-value=27 Score=30.64 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=42.3
Q ss_pred hhccCcce-------EEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCCCCCeeehhh
Q 008678 176 SMTNGASF-------VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVV 248 (557)
Q Consensus 176 ~~~~~~~~-------~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~~~pVv~~~v 248 (557)
.+.|.|+- -.|..||++..+.....+.........+. .. ....++......+++++.||+++.-
T Consensus 17 ~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~vv~~c~ 87 (122)
T cd01448 17 RILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHM--------LP-SPEEFAELLGSLGISNDDTVVVYDD 87 (122)
T ss_pred EEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCC--------CC-CHHHHHHHHHHcCCCCCCEEEEECC
Confidence 46666665 55667888877665555433321111221 11 1233555556678999999975321
Q ss_pred hhhhHHHHHHHHHHHHhCCCC
Q 008678 249 FLGTSATLWIFYWWWTYGGYS 269 (557)
Q Consensus 249 ~~g~~a~l~~~~~l~~~~gy~ 269 (557)
.-+. .....+|.++..||.
T Consensus 88 ~g~~--~a~~~~~~l~~~G~~ 106 (122)
T cd01448 88 GGGF--FAARAWWTLRYFGHE 106 (122)
T ss_pred CCCc--cHHHHHHHHHHcCCC
Confidence 1111 111235555666654
No 94
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.52 E-value=72 Score=30.49 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=34.3
Q ss_pred CCCCeEEEEeCCCh---HHHHHHHHHHHhcCCceEE--eccc----------HHHHHHcCCceeccCC
Q 008678 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQGG----------FQSWVKEGLRIKELKS 404 (557)
Q Consensus 352 ~kd~~VIVyC~sG~---RSa~AA~~L~~lGf~nVyv--LdGG----------i~aWkaaGLPV~~~~~ 404 (557)
++..+|+++|..|+ ..-.+|+.|...|++ |.+ +... +..+++.|.++.....
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 89 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDS 89 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCC
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccc
Confidence 57789999999887 667789999999996 554 3221 3456667776665333
No 95
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=32.43 E-value=80 Score=27.33 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=34.4
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCCCCCeeehhhhhhhHHHHHHHHHHHHhCCC
Q 008678 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGY 268 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~gy 268 (557)
||++.++.....+.... .+ ... ....++.....+++.+++++|++.-- |. .+ ..++|.++..||
T Consensus 40 ghIpgA~~~p~~~~~~~----~~-------~~~--~~~~~~~~~~~~~~~~~~~iv~yc~~-g~-~s-~~~~~~l~~~G~ 103 (118)
T cd01449 40 GHIPGAVNIPWTSLLDE----DG-------TFK--SPEELRALFAALGITPDKPVIVYCGS-GV-TA-CVLLLALELLGY 103 (118)
T ss_pred CcCCCCcccChHHhcCC----CC-------CcC--CHHHHHHHHHHcCCCCCCCEEEECCc-HH-HH-HHHHHHHHHcCC
Confidence 88888776655543321 11 111 12345566667788899999854221 11 11 124555666666
Q ss_pred C
Q 008678 269 S 269 (557)
Q Consensus 269 ~ 269 (557)
.
T Consensus 104 ~ 104 (118)
T cd01449 104 K 104 (118)
T ss_pred C
Confidence 3
No 96
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.05 E-value=87 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.0
Q ss_pred eEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHH
Q 008678 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (557)
Q Consensus 356 ~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~ 390 (557)
+|+|+|.... ||..+...|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6999998665 9988888888877666777776643
No 97
>PRK10126 tyrosine phosphatase; Provisional
Probab=30.25 E-value=63 Score=30.12 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.8
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008678 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aW 392 (557)
.+|+|+|.+.. ||..+...|+.++- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998765 99988888888763 466666776555
No 98
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=28.62 E-value=2.4e+02 Score=27.15 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=42.1
Q ss_pred ccCCCCeEEEEeCCCh--HHHHHHHHHHHh---cCCceEEecccHHHHH-----HcCCceeccCCcchhhhhh
Q 008678 350 IVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSWV-----KEGLRIKELKSETALTILN 412 (557)
Q Consensus 350 ~v~kd~~VIVyC~sG~--RSa~AA~~L~~l---Gf~nVyvLdGGi~aWk-----aaGLPV~~~~~~~~leil~ 412 (557)
.++++..+|+.|..|. .|...|..|... |..++..+-||-.++. .+...+.-.+-..|-++.+
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~lar 135 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVR 135 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHH
Confidence 3456778899998886 788888888654 5557888889876552 2445555444445555543
No 99
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.11 E-value=73 Score=27.51 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhccc
Q 008678 78 FDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID 134 (557)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 134 (557)
+.++.+.+.+-+.+..+.+.+.+.+.-+++...+.++-..+.+..+.+..+.....+
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 63 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333444443333333333
No 100
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=26.86 E-value=56 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.3
Q ss_pred eEEEEeCCCh-HHHHHHHHHHHhcCC-ceEEecccHHHH
Q 008678 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (557)
Q Consensus 356 ~VIVyC~sG~-RSa~AA~~L~~lGf~-nVyvLdGGi~aW 392 (557)
+|+|+|.+.. ||..+...++++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6999998765 998888888877544 677888887543
No 101
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.50 E-value=83 Score=29.40 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.6
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008678 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi~aW 392 (557)
++|+|+|.+.. ||..+...|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999998665 99888888887653 466777777655
No 102
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.77 E-value=1.1e+02 Score=31.54 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCh---HHHHHHHHHHHhcCCceEEe
Q 008678 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VIVyC~sG~---RSa~AA~~L~~lGf~nVyvL 385 (557)
.++|+|+|..|+ ..-.+|+.|...|++ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 368999998665 778899999999995 5544
No 103
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=1.3e+02 Score=28.28 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEecChhhHhhcCCCCCc------ccccccccccCccc--ccchhhhhhcCchhhHHHH
Q 008678 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPE--VGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRsp~Ef~~GHIPGAi------~a~~~~~~nIPlse--L~~~l~~Llkdp~~L~~~L 340 (557)
.+.++++++.+.-+. .=..+|--|+..|= ..=|+.- ..+-..+.+||... +.. +.++..-
T Consensus 13 sgQi~~~D~~~iaa~-GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~---------~dV~~f~ 80 (130)
T COG3453 13 SGQISPADIASIAAL-GFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE---------ADVEAFQ 80 (130)
T ss_pred cCCCCHHHHHHHHHh-ccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCH---------HHHHHHH
Confidence 468999999887642 23468888885543 2233321 11112334566432 111 1222211
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCChHHHHHHHH
Q 008678 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 341 ~alGI~~Lk~v~kd~~VIVyC~sG~RSa~AA~~ 373 (557)
+++. ..+.||+-||++|.||...+..
T Consensus 81 ~Al~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 81 RALD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HHHH-------HhCCCEEeeecCCchHHHHHHH
Confidence 1221 2578999999999999766543
No 104
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.87 E-value=1.5e+02 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCCeEEEEeCCCh-HHHH-HHHHHHHhcC
Q 008678 353 DRSKVIVMDADGT-RSKG-IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~-AA~~L~~lGf 379 (557)
.+.+|+|+|..|. |+.. +|..|...|+
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6779999999986 6644 4455555554
No 105
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.15 E-value=1.3e+02 Score=29.07 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=21.4
Q ss_pred hhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhcccc
Q 008678 95 KGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ 135 (557)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 135 (557)
.+-+-|-+.|..+.+++++.+|.+++-+|.++..+...++.
T Consensus 34 ~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~e 74 (155)
T PF07464_consen 34 EQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEE 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Confidence 33333444455566666666666666666665544444444
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.77 E-value=3.9e+02 Score=27.24 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=20.7
Q ss_pred CCeEEEEeCCChHHHHHH-HHHHHhcCC
Q 008678 354 RSKVIVMDADGTRSKGIA-RSLRKLGVM 380 (557)
Q Consensus 354 d~~VIVyC~sG~RSa~AA-~~L~~lGf~ 380 (557)
.+..++||.+...+...+ .+.+.+||.
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 588999999998776654 455677885
No 107
>PRK13530 arsenate reductase; Provisional
Probab=22.76 E-value=1.5e+02 Score=27.33 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=25.8
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccH
Q 008678 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGf~nVyvLdGGi 389 (557)
++|+|+|.+.. ||..+...++.++-.++.+...|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 58999998765 888777777766545676777665
No 108
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.47 E-value=76 Score=26.86 Aligned_cols=77 Identities=8% Similarity=-0.058 Sum_probs=40.2
Q ss_pred hhhccCcceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCCCCCeeehhhhhhhHH
Q 008678 175 ESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 254 (557)
Q Consensus 175 ~~~~~~~~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~ale~l~~~lG~~~~~pVv~~~v~~g~~a 254 (557)
-.+.|.|+--.|..||++..+.....+.... .. . ...-++...+..+...++++|++.-- |. .
T Consensus 16 ~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~---------~--~~~~~~~~~~~~~~~~~~~ivv~c~~-g~-~ 78 (106)
T cd01519 16 KVLIDVREPEELKTGKIPGAINIPLSSLPDA----LA---------L--SEEEFEKKYGFPKPSKDKELIFYCKA-GV-R 78 (106)
T ss_pred EEEEECCCHHHHhcCcCCCcEEechHHhhhh----hC---------C--CHHHHHHHhcccCCCCCCeEEEECCC-cH-H
Confidence 3466777777778899988765544432111 00 0 01224444555677778898753221 21 1
Q ss_pred HHHHHHHHHHhCCCC
Q 008678 255 TLWIFYWWWTYGGYS 269 (557)
Q Consensus 255 ~l~~~~~l~~~~gy~ 269 (557)
. ..+++.+...||.
T Consensus 79 s-~~~~~~l~~~G~~ 92 (106)
T cd01519 79 S-KAAAELARSLGYE 92 (106)
T ss_pred H-HHHHHHHHHcCCc
Confidence 1 1234555555653
No 109
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.94 E-value=1.1e+02 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEeCCChHHHHHH-HH----HHHhcCCceEEeccc
Q 008678 356 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 388 (557)
Q Consensus 356 ~VIVyC~sG~RSa~AA-~~----L~~lGf~nVyvLdGG 388 (557)
+|++.|.+|..+...+ .. +.+.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999998655544 44 4666764 4444443
No 110
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.72 E-value=1.1e+02 Score=26.71 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCeEEEEeCCChHHHHHHHHH----HHhcCCceEEecccHHHH
Q 008678 354 RSKVIVMDADGTRSKGIARSL----RKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 354 d~~VIVyC~sG~RSa~AA~~L----~~lGf~nVyvLdGGi~aW 392 (557)
..+|++.|.+|..|..++..+ ++.|++ +.+-..++..-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 468999999999777776655 455663 55555555544
No 111
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=20.84 E-value=1.3e+02 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCCh-HHHHHHHHHHHh-cCCceEEecccHHHHHH
Q 008678 353 DRSKVIVMDADGT-RSKGIARSLRKL-GVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~AA~~L~~l-Gf~nVyvLdGGi~aWka 394 (557)
.+.||+++|.+|. |+..+.-.|+++ |.. +..=+++++.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~----~~~i~~Ey~~ 129 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGWS----LSSIFDEYRR 129 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCCC----HHHHHHHHHH
Confidence 5679999999997 888888788754 432 4444556665
Done!