Query 008679
Match_columns 557
No_of_seqs 289 out of 2276
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04857 Peptidases_S8_Tripepti 100.0 2.8E-42 6.2E-47 356.8 23.0 220 2-383 185-412 (412)
2 cd05562 Peptidases_S53_like Pe 100.0 1.5E-42 3.3E-47 347.0 19.9 224 2-415 48-274 (275)
3 cd07497 Peptidases_S8_14 Pepti 100.0 4.8E-42 1E-46 348.4 19.8 234 1-380 55-311 (311)
4 cd07478 Peptidases_S8_CspA-lik 100.0 1.9E-41 4.2E-46 360.9 22.4 353 1-406 77-455 (455)
5 PTZ00262 subtilisin-like prote 100.0 6.5E-42 1.4E-46 365.0 18.6 224 1-420 377-618 (639)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 4.9E-41 1.1E-45 333.5 21.1 200 2-384 45-254 (255)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.1E-39 2.4E-44 339.1 23.8 239 2-415 82-346 (346)
8 cd05561 Peptidases_S8_4 Peptid 100.0 1.3E-39 2.8E-44 320.4 21.1 203 2-406 36-239 (239)
9 cd07474 Peptidases_S8_subtilis 100.0 3.8E-39 8.3E-44 327.8 24.3 231 2-413 62-295 (295)
10 cd07489 Peptidases_S8_5 Peptid 100.0 9.5E-39 2.1E-43 327.3 22.4 230 2-418 68-301 (312)
11 cd07476 Peptidases_S8_thiazoli 100.0 9.8E-39 2.1E-43 318.5 21.5 201 2-385 50-254 (267)
12 cd07493 Peptidases_S8_9 Peptid 100.0 1.5E-38 3.3E-43 317.6 21.2 202 1-381 46-261 (261)
13 cd04852 Peptidases_S8_3 Peptid 100.0 1.8E-38 3.8E-43 324.5 21.9 200 2-381 108-307 (307)
14 cd07483 Peptidases_S8_Subtilis 100.0 1.9E-38 4E-43 321.2 21.5 196 2-381 85-291 (291)
15 cd04847 Peptidases_S8_Subtilis 100.0 1.4E-38 3.1E-43 322.7 18.3 233 1-381 37-291 (291)
16 cd07487 Peptidases_S8_1 Peptid 100.0 1.8E-37 3.9E-42 310.3 22.3 215 2-381 44-264 (264)
17 cd07481 Peptidases_S8_Bacillop 100.0 1.5E-37 3.3E-42 310.8 21.5 196 2-381 52-264 (264)
18 cd07498 Peptidases_S8_15 Pepti 100.0 1.6E-36 3.4E-41 299.7 20.6 202 2-379 40-242 (242)
19 cd07490 Peptidases_S8_6 Peptid 100.0 3.2E-36 7E-41 299.6 21.8 211 2-381 43-254 (254)
20 cd07496 Peptidases_S8_13 Pepti 100.0 6.4E-36 1.4E-40 302.4 21.2 202 2-379 71-285 (285)
21 cd07485 Peptidases_S8_Fervidol 100.0 3.1E-35 6.8E-40 295.6 21.2 204 2-379 61-273 (273)
22 PF00082 Peptidase_S8: Subtila 100.0 1.8E-36 4E-41 305.8 12.0 232 1-415 45-282 (282)
23 KOG1114 Tripeptidyl peptidase 100.0 4.6E-35 9.9E-40 311.7 21.7 241 2-415 310-557 (1304)
24 cd07477 Peptidases_S8_Subtilis 100.0 9.5E-35 2.1E-39 284.5 21.6 189 1-379 39-229 (229)
25 cd07484 Peptidases_S8_Thermita 100.0 8.9E-35 1.9E-39 290.3 21.5 193 1-383 67-259 (260)
26 cd07473 Peptidases_S8_Subtilis 100.0 1.2E-34 2.5E-39 289.3 21.8 192 2-381 63-259 (259)
27 cd07494 Peptidases_S8_10 Pepti 100.0 8E-35 1.7E-39 294.8 19.6 202 2-385 61-287 (298)
28 cd04842 Peptidases_S8_Kp43_pro 100.0 1.5E-34 3.3E-39 293.7 19.3 227 2-381 54-293 (293)
29 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.7E-34 5.8E-39 286.0 20.1 187 2-382 63-255 (255)
30 cd07482 Peptidases_S8_Lantibio 100.0 4.8E-34 1E-38 290.1 20.1 99 2-121 53-158 (294)
31 cd04843 Peptidases_S8_11 Pepti 100.0 4.2E-34 9E-39 286.4 19.0 201 1-381 50-277 (277)
32 cd07480 Peptidases_S8_12 Pepti 100.0 8E-34 1.7E-38 288.7 20.6 222 2-411 46-296 (297)
33 cd07492 Peptidases_S8_8 Peptid 100.0 6.1E-33 1.3E-37 270.4 20.4 179 2-381 44-222 (222)
34 cd07491 Peptidases_S8_7 Peptid 100.0 1.8E-33 4E-38 277.2 16.8 116 2-138 49-169 (247)
35 cd07488 Peptidases_S8_2 Peptid 100.0 8E-34 1.7E-38 279.0 13.3 190 2-380 37-247 (247)
36 cd04848 Peptidases_S8_Autotran 100.0 1.9E-32 4.2E-37 274.0 18.3 200 2-381 46-267 (267)
37 KOG1153 Subtilisin-related pro 100.0 5.5E-33 1.2E-37 277.4 12.8 187 1-381 256-461 (501)
38 cd04059 Peptidases_S8_Protein_ 100.0 1E-31 2.2E-36 273.5 15.7 195 2-381 84-297 (297)
39 KOG4266 Subtilisin kexin isozy 100.0 6.1E-28 1.3E-32 247.7 19.4 218 2-415 238-465 (1033)
40 cd00306 Peptidases_S8_S53 Pept 100.0 5.4E-27 1.2E-31 229.8 20.9 192 2-379 44-241 (241)
41 COG1404 AprE Subtilisin-like s 99.8 1.7E-19 3.7E-24 195.6 18.9 223 1-415 182-420 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 2.5E-17 5.5E-22 171.6 15.4 101 30-142 82-198 (361)
43 cd02133 PA_C5a_like PA_C5a_lik 99.5 2.9E-13 6.3E-18 122.3 11.8 116 167-300 25-141 (143)
44 cd02120 PA_subtilisin_like PA_ 99.4 1.3E-12 2.8E-17 115.5 13.0 123 148-275 2-125 (126)
45 cd04816 PA_SaNapH_like PA_SaNa 99.1 4.2E-10 9.2E-15 98.8 9.2 88 188-275 29-121 (122)
46 cd02129 PA_hSPPL_like PA_hSPPL 99.1 7.7E-10 1.7E-14 95.5 9.3 82 188-269 30-115 (120)
47 cd02122 PA_GRAIL_like PA _GRAI 99.1 9.3E-10 2E-14 98.2 10.0 90 187-276 43-138 (138)
48 cd02127 PA_hPAP21_like PA_hPAP 99.0 1.3E-09 2.7E-14 94.7 9.9 88 188-276 21-116 (118)
49 KOG3526 Subtilisin-like propro 99.0 1.3E-10 2.8E-15 114.7 3.4 87 338-424 376-466 (629)
50 cd04818 PA_subtilisin_1 PA_sub 99.0 3E-09 6.6E-14 92.8 9.9 88 187-275 26-117 (118)
51 cd02130 PA_ScAPY_like PA_ScAPY 99.0 7.6E-09 1.6E-13 90.8 12.5 86 189-275 32-121 (122)
52 cd02126 PA_EDEM3_like PA_EDEM3 99.0 2.9E-09 6.2E-14 93.8 9.4 87 188-275 27-125 (126)
53 PF02225 PA: PA domain; Inter 99.0 8.7E-10 1.9E-14 93.3 5.7 78 189-266 20-101 (101)
54 cd00538 PA PA: Protease-associ 98.9 4.7E-09 1E-13 92.5 9.1 89 187-275 29-125 (126)
55 cd02132 PA_GO-like PA_GO-like: 98.9 7.7E-09 1.7E-13 92.7 9.6 85 188-275 48-138 (139)
56 cd02125 PA_VSR PA_VSR: Proteas 98.9 8.2E-09 1.8E-13 90.8 9.3 88 188-275 22-126 (127)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.9 1.2E-08 2.7E-13 89.9 9.9 89 186-275 39-128 (129)
58 cd04817 PA_VapT_like PA_VapT_l 98.9 8.8E-09 1.9E-13 91.5 8.7 75 195-269 49-134 (139)
59 cd04813 PA_1 PA_1: Protease-as 98.8 1.5E-08 3.3E-13 87.7 9.0 80 188-269 27-112 (117)
60 cd02123 PA_C_RZF_like PA_C-RZF 98.8 3.8E-08 8.2E-13 89.7 9.4 84 188-271 50-142 (153)
61 PF06280 DUF1034: Fn3-like dom 98.7 1.3E-07 2.7E-12 81.7 11.5 90 461-553 2-112 (112)
62 cd04819 PA_2 PA_2: Protease-as 98.7 3.6E-07 7.9E-12 80.7 12.4 91 168-271 23-122 (127)
63 cd04815 PA_M28_2 PA_M28_2: Pro 98.1 1.3E-05 2.9E-10 71.3 8.2 79 197-275 34-133 (134)
64 cd02128 PA_TfR PA_TfR: Proteas 97.8 6.1E-05 1.3E-09 70.0 7.3 72 198-269 51-156 (183)
65 KOG2442 Uncharacterized conser 97.5 0.00031 6.7E-09 72.8 8.9 82 198-279 91-178 (541)
66 cd04814 PA_M28_1 PA_M28_1: Pro 97.3 0.00056 1.2E-08 61.1 6.5 63 168-237 20-100 (142)
67 cd04822 PA_M28_1_3 PA_M28_1_3: 97.2 0.0021 4.6E-08 58.1 9.4 77 189-265 34-131 (151)
68 cd04820 PA_M28_1_1 PA_M28_1_1: 97.2 0.00097 2.1E-08 59.2 6.6 62 169-237 23-96 (137)
69 cd02121 PA_GCPII_like PA_GCPII 97.2 0.00099 2.1E-08 64.1 6.9 47 190-236 54-105 (220)
70 COG4934 Predicted protease [Po 97.1 0.0063 1.4E-07 70.3 14.2 95 31-137 288-395 (1174)
71 PF14874 PapD-like: Flagellar- 96.6 0.09 1.9E-06 44.1 14.1 83 466-556 19-101 (102)
72 cd02131 PA_hNAALADL2_like PA_h 96.4 0.0035 7.6E-08 56.0 4.2 39 199-237 37-75 (153)
73 PF10633 NPCBM_assoc: NPCBM-as 96.4 0.013 2.8E-07 46.8 6.9 64 467-534 5-69 (78)
74 KOG3920 Uncharacterized conser 96.2 0.0066 1.4E-07 53.7 4.7 89 188-277 74-172 (193)
75 KOG4628 Predicted E3 ubiquitin 95.7 0.027 5.9E-07 57.4 6.9 81 189-269 63-150 (348)
76 PF11614 FixG_C: IG-like fold 94.5 1.2 2.5E-05 38.5 13.0 55 468-523 32-86 (118)
77 KOG3525 Subtilisin-like propro 93.7 0.11 2.4E-06 55.4 5.9 75 341-416 250-325 (431)
78 cd04821 PA_M28_1_2 PA_M28_1_2: 93.6 0.12 2.6E-06 47.1 5.0 43 194-236 41-102 (157)
79 PF06030 DUF916: Bacterial pro 89.3 4.5 9.7E-05 35.2 10.1 71 465-542 25-119 (121)
80 COG1470 Predicted membrane pro 88.6 3.7 8E-05 43.4 10.4 71 467-542 397-468 (513)
81 PF00345 PapD_N: Pili and flag 82.8 11 0.00025 32.4 9.4 53 468-522 15-74 (122)
82 TIGR02745 ccoG_rdxA_fixG cytoc 81.3 11 0.00023 40.4 10.2 55 468-523 347-401 (434)
83 COG1470 Predicted membrane pro 79.4 18 0.00039 38.5 10.6 63 467-534 284-352 (513)
84 PF00635 Motile_Sperm: MSP (Ma 76.0 18 0.00038 30.3 8.2 53 467-522 18-70 (109)
85 smart00237 Calx_beta Domains i 59.7 93 0.002 25.2 9.3 64 457-522 8-76 (90)
86 PF07718 Coatamer_beta_C: Coat 59.1 99 0.0022 27.6 9.3 68 469-543 71-139 (140)
87 PF07705 CARDB: CARDB; InterP 57.3 71 0.0015 25.7 8.1 53 466-522 18-72 (101)
88 PF12690 BsuPI: Intracellular 56.4 69 0.0015 25.7 7.4 53 469-522 2-71 (82)
89 PLN03080 Probable beta-xylosid 55.3 74 0.0016 37.0 10.2 82 468-551 685-778 (779)
90 TIGR00845 caca sodium/calcium 53.2 1.2E+02 0.0027 35.6 11.4 67 454-523 403-476 (928)
91 PF07610 DUF1573: Protein of u 52.7 63 0.0014 22.5 5.9 44 473-519 2-45 (45)
92 PF05753 TRAP_beta: Translocon 49.9 1.3E+02 0.0028 28.2 9.1 55 467-522 38-98 (181)
93 PF03160 Calx-beta: Calx-beta 48.5 1.3E+02 0.0029 24.5 8.3 67 455-522 15-86 (100)
94 PF02845 CUE: CUE domain; Int 45.8 20 0.00043 24.6 2.3 24 357-380 5-28 (42)
95 PF00927 Transglut_C: Transglu 45.6 1.5E+02 0.0031 24.7 8.2 57 465-523 13-78 (107)
96 PRK15098 beta-D-glucoside gluc 44.4 62 0.0013 37.6 7.5 67 453-522 644-728 (765)
97 PF08260 Kinin: Insect kinin p 44.0 11 0.00023 16.4 0.4 6 293-298 3-8 (8)
98 KOG2018 Predicted dinucleotide 42.8 37 0.0008 34.4 4.5 87 31-120 137-247 (430)
99 smart00635 BID_2 Bacterial Ig- 42.7 75 0.0016 25.1 5.7 26 496-522 4-29 (81)
100 cd08523 Reeler_cohesin_like Do 40.9 1.8E+02 0.0038 25.5 8.0 21 503-523 74-94 (124)
101 PF08821 CGGC: CGGC domain; I 35.6 2.2E+02 0.0047 24.1 7.6 71 32-113 31-104 (107)
102 PF02601 Exonuc_VII_L: Exonucl 33.4 1.4E+02 0.0031 30.4 7.5 74 35-120 39-119 (319)
103 TIGR03391 FeS_syn_CsdE cystein 32.3 40 0.00086 30.1 2.7 33 341-374 72-104 (138)
104 PRK15019 CsdA-binding activato 32.2 45 0.00097 30.1 3.0 33 341-374 77-109 (147)
105 PF04255 DUF433: Protein of un 30.1 45 0.00097 24.5 2.2 40 338-377 9-54 (56)
106 PF13598 DUF4139: Domain of un 29.1 2.9E+02 0.0063 28.0 8.9 20 469-488 244-263 (317)
107 smart00546 CUE Domain that may 29.0 80 0.0017 21.6 3.3 25 356-380 5-29 (43)
108 PRK09296 cysteine desufuration 28.9 49 0.0011 29.5 2.7 33 341-374 67-99 (138)
109 PF01345 DUF11: Domain of unkn 28.5 1.6E+02 0.0035 22.7 5.4 31 466-497 40-72 (76)
110 TIGR01451 B_ant_repeat conserv 28.0 2.3E+02 0.0051 20.4 6.3 39 465-506 10-50 (53)
111 PF02657 SufE: Fe-S metabolism 26.1 71 0.0015 27.9 3.2 33 342-375 59-91 (125)
112 cd00407 Urease_beta Urease bet 25.6 2.1E+02 0.0046 23.9 5.5 50 467-518 18-82 (101)
113 PRK13203 ureB urease subunit b 25.4 2.2E+02 0.0047 23.9 5.6 50 467-518 18-82 (102)
114 COG1570 XseA Exonuclease VII, 25.3 1.9E+02 0.004 31.0 6.6 74 35-120 160-237 (440)
115 PF05506 DUF756: Domain of unk 24.8 3.7E+02 0.0079 21.5 9.9 46 469-519 20-65 (89)
116 PF13940 Ldr_toxin: Toxin Ldr, 24.7 61 0.0013 21.2 1.7 12 348-359 14-25 (35)
117 PRK15308 putative fimbrial pro 24.7 3.2E+02 0.0069 26.7 7.7 53 468-521 32-100 (234)
118 COG2166 sufE Cysteine desulfur 23.4 73 0.0016 28.5 2.7 32 342-374 73-104 (144)
119 TIGR00192 urease_beta urease, 22.7 2.6E+02 0.0057 23.4 5.6 50 467-518 18-82 (101)
120 PRK13202 ureB urease subunit b 22.1 2.8E+02 0.0062 23.3 5.7 48 469-518 21-83 (104)
121 PF04744 Monooxygenase_B: Mono 21.4 3.2E+02 0.0069 28.5 7.1 53 467-521 263-335 (381)
122 PRK09918 putative fimbrial cha 20.0 3.5E+02 0.0076 26.3 7.0 53 467-520 38-93 (230)
No 1
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.8e-42 Score=356.84 Aligned_cols=220 Identities=26% Similarity=0.264 Sum_probs=165.1
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||||+. .....+.||||+|+|+.+|+++.... ..+....+++||++|++.|+||||
T Consensus 185 ~gHGThVAGIIAg~~---------~~~~~~~GVAP~A~I~svkv~d~~~g------s~~t~~~l~~ai~~ai~~gadVIN 249 (412)
T cd04857 185 GAHGTHVAGIAAAHF---------PEEPERNGVAPGAQIVSIKIGDTRLG------SMETGTALVRAMIAAIETKCDLIN 249 (412)
T ss_pred CCCHHHHHHHHhCCC---------CCCCceEEecCCCeEEEEEeccCCCC------CccchHHHHHHHHHHHHcCCCEEE
Confidence 589999999999983 22334689999999999999865431 123456799999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHH-HHHhCCcEEEEecCCCCCCCCCCCCC---CCceEEecccccCcceeeeEEeCCCcEEE
Q 008679 82 ISIGTNQPFAFNRDGIAIGAL-NAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGMEII 157 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~-~a~~~Gv~vV~AAGN~G~~~~~~~~~---ap~vitVga~~~~~~~~~~~~~~~~~~~~ 157 (557)
||||........ ..+..++. .+.++|+++|+||||+|+...++..+ ++.||+|||............+
T Consensus 250 ~SlG~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------- 321 (412)
T cd04857 250 MSYGEATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------- 321 (412)
T ss_pred ecCCcCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-------
Confidence 999984321111 22333444 35579999999999999877766543 5799999985332110000000
Q ss_pred eeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCC
Q 008679 158 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 237 (557)
Q Consensus 158 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~ 237 (557)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCc
Q 008679 238 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 317 (557)
Q Consensus 238 ~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 317 (557)
.....+.++.||||||+.+ +.+||||+|||+.
T Consensus 322 ----------------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~ 353 (412)
T cd04857 322 ----------------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGA 353 (412)
T ss_pred ----------------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCc
Confidence 0011356889999999986 9999999999999
Q ss_pred EEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 008679 318 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK 383 (557)
Q Consensus 318 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~ 383 (557)
|++.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 354 I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 354 IASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 98752211 15789999999999999999999975 478999999999999999864
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.5e-42 Score=346.95 Aligned_cols=224 Identities=28% Similarity=0.221 Sum_probs=173.8
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|++|||
T Consensus 48 ~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~Vin 95 (275)
T cd05562 48 GDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGADIIV 95 (275)
T ss_pred CchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCCEEE
Confidence 599999999994 79999999998862 3477899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhC-CcEEEEecCCCCCCCC-CCCCCCCceEEecccccCcceeeeEEeCCCcEEEee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 159 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~ 159 (557)
||||......+.+..+..+++++.++ |++||+||||+|+... ..+...|++|+|||..........
T Consensus 96 ~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------ 163 (275)
T cd05562 96 DDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG------------ 163 (275)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc------------
Confidence 99998433223345688888888887 9999999999997432 223456999999986532210000
Q ss_pred eeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC
Q 008679 160 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG 239 (557)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~ 239 (557)
.|.. .
T Consensus 164 ------------------------------s~~~--------------------------------------------~- 168 (275)
T cd05562 164 ------------------------------SDPA--------------------------------------------P- 168 (275)
T ss_pred ------------------------------cccc--------------------------------------------c-
Confidence 0000 0
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCC-cE
Q 008679 240 NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL-NI 318 (557)
Q Consensus 240 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I 318 (557)
.......+.|++|||+.. +.+||||+|||+ ++
T Consensus 169 ---------------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~ 201 (275)
T cd05562 169 ---------------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNG 201 (275)
T ss_pred ---------------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccc
Confidence 000123456888999875 789999999975 44
Q ss_pred EecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCCCCCC
Q 008679 319 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 398 (557)
Q Consensus 319 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 398 (557)
.+.+.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +.
T Consensus 202 ~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g 257 (275)
T cd05562 202 TVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PG 257 (275)
T ss_pred cCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CC
Confidence 554433 689999999999999999999999999999999999999999988743 23
Q ss_pred CCCeeeccccCccCcCC
Q 008679 399 TPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 399 ~~~~~G~G~vn~~~A~~ 415 (557)
.+..||||+||+.+|++
T Consensus 258 ~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 258 YDNASGSGLVDADRAVA 274 (275)
T ss_pred CCCCcCcCcccHHHHhh
Confidence 56789999999999986
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-42 Score=348.42 Aligned_cols=234 Identities=26% Similarity=0.245 Sum_probs=161.7
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCC-CCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHH-------HHHHH
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDA 72 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~-~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~-------ai~~A 72 (557)
++||||||||||||......+.+ ++ ....+.||||+|+|+.+|+|...+ .+....+.. +++|.
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~~--------~~~~~~~~~g~~~~~~~~~~~ 125 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFGD--------VIYAWLWTAGFDPVDRKLSWI 125 (311)
T ss_pred ccccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecCC--------cchhhhhhhccchhhhhhhhh
Confidence 47999999999999843221111 11 123578999999999999997543 133333333 33443
Q ss_pred --HHCCCcEEEEecCCCCCCC----CCcchHHHHHHH-HHhCCcEEEEecCCCCCCCCCCCC--CCCceEEecccccCcc
Q 008679 73 --IRDGVHVLSISIGTNQPFA----FNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRD 143 (557)
Q Consensus 73 --~~~gvdVIn~SlG~~~~~~----~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~~--~ap~vitVga~~~~~~ 143 (557)
.++++||||||||...... ...+..+..++. +.++|++||+||||+|+...++.. .++++|+|||+.....
T Consensus 126 ~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~ 205 (311)
T cd07497 126 YTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDY 205 (311)
T ss_pred hccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcc
Confidence 3679999999999843211 112334444443 348999999999999986555554 4589999999653211
Q ss_pred eeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHh
Q 008679 144 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 223 (557)
Q Consensus 144 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~ 223 (557)
.+.. .+.+
T Consensus 206 ~~~~-----------------------~~~~------------------------------------------------- 213 (311)
T cd07497 206 RPFY-----------------------LFGY------------------------------------------------- 213 (311)
T ss_pred cchh-----------------------hhcc-------------------------------------------------
Confidence 0000 0000
Q ss_pred hcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCC
Q 008679 224 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALD 303 (557)
Q Consensus 224 ~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~ 303 (557)
.....+.++.||||||+.+
T Consensus 214 ------------------------------------------------------------~~~~~~~~~~fSs~Gp~~~- 232 (311)
T cd07497 214 ------------------------------------------------------------LPGGSGDVVSWSSRGPSIA- 232 (311)
T ss_pred ------------------------------------------------------------ccCCCCCccccccCCCCcc-
Confidence 0011367899999999986
Q ss_pred CCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHH
Q 008679 304 PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALM 377 (557)
Q Consensus 304 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p------~~s~~~ik~~L~ 377 (557)
+++||||+|||++|+++.+...... .......|..|+|||||||||||++|||+|++| .++|++||++|+
T Consensus 233 -g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~ 308 (311)
T cd07497 233 -GDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILM 308 (311)
T ss_pred -cCCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHH
Confidence 9999999999999999876532100 011124799999999999999999999999976 589999999999
Q ss_pred ccc
Q 008679 378 TTA 380 (557)
Q Consensus 378 ~TA 380 (557)
+||
T Consensus 309 ~tA 311 (311)
T cd07497 309 STA 311 (311)
T ss_pred hcC
Confidence 997
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.9e-41 Score=360.88 Aligned_cols=353 Identities=23% Similarity=0.170 Sum_probs=207.3
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCcc--CCCCCCHHHHHHHHHHHHHC---
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA--AGNTCFEADMLAAIDDAIRD--- 75 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~--~~~~~~~~~i~~ai~~A~~~--- 75 (557)
++||||||||||||+ +.....+.||||+|+|+++|++...+..... .-..+...++++||+|+++.
T Consensus 77 ~~GHGThvAGIiag~---------~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 77 ENGHGTHVAGIAAGN---------GDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCchHHHHHHHhcC---------CCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 369999999999998 3334456899999999999999876510000 00016788999999999874
Q ss_pred --CCcEEEEecCCCCCCCCCcchHHHHHHHHHhC-CcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCC
Q 008679 76 --GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGT 152 (557)
Q Consensus 76 --gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~ 152 (557)
.++|||||||...+.+...++++.+++.+.++ |++||+||||+|....+....- ...+ ..-...+.++.
T Consensus 148 ~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~---~~~~-----~~~~ie~~v~~ 219 (455)
T cd07478 148 LNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI---VPNG-----ETKTVELNVGE 219 (455)
T ss_pred hCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee---ccCC-----ceEEEEEEECC
Confidence 47899999999767788889999999987776 9999999999997544433210 0000 00011112222
Q ss_pred CcEEEeeeeccCCCC-ceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCc------cchhhhHHHhhc
Q 008679 153 GMEIIGKTVTPYNLK-KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG------FKLSKGMEVKRA 225 (557)
Q Consensus 153 ~~~~~g~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------~~~~k~~~~~~~ 225 (557)
+.......++....+ -...|+...--.. .......-....+.......++.+..+... ....+.++ ...
T Consensus 220 ~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~---~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~-~~~ 295 (455)
T cd07478 220 GEKGFNLEIWGDFPDRFSVSIISPSGESS---GRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN-IKP 295 (455)
T ss_pred CCcceEEEEecCCCCEEEEEEECCCCCcc---CccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccC-CCc
Confidence 111100011100000 0001110000000 000000000000000000111222111100 00111112 233
Q ss_pred CceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEe----ceEEeecC-CCCccccccCCCCC
Q 008679 226 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ----ARTVLHTQ-PAPFMANFTSRGPN 300 (557)
Q Consensus 226 Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~~~~~-~~~~~a~fSS~GP~ 300 (557)
|...+.++.... ....+..++|...+..++..+| ......++++.. ..++.... ..+.++.||||||+
T Consensus 296 GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~f~----~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~ 368 (455)
T cd07478 296 GIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTRFL----EPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPT 368 (455)
T ss_pred cceEEEEEeccC---CCceEEEEecCcCcCCCCCEee----cCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcC
Confidence 555555555421 1112344566554444433333 333333443322 22333322 34579999999999
Q ss_pred CCCCCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhC------CCCCHHHHHH
Q 008679 301 ALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH------PDWSSAAIRS 374 (557)
Q Consensus 301 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~------p~~s~~~ik~ 374 (557)
.+ +++||||+|||++|+++++. +.|..++|||||||||||++|||+|++ |.|++++||+
T Consensus 369 ~~--~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~ 433 (455)
T cd07478 369 RD--GRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKT 433 (455)
T ss_pred CC--CCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHH
Confidence 86 99999999999999999986 689999999999999999999999985 5679999999
Q ss_pred HHHccccccCCCCCcccCCCCCCCCCCeeecc
Q 008679 375 ALMTTAWMKNNKALPITNADGSIATPFSFGSG 406 (557)
Q Consensus 375 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 406 (557)
+|++||+++.. ..+++.++|||
T Consensus 434 ~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 434 YLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHHHhCccCCC----------CCCCCCCCCCC
Confidence 99999998752 34688999998
No 5
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=6.5e-42 Score=364.99 Aligned_cols=224 Identities=22% Similarity=0.187 Sum_probs=172.6
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 80 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVI 80 (557)
++||||||||||||. +.+...+.||||+|+|+++|+++..+ .+..+++++||+||++.|++||
T Consensus 377 ~~GHGTHVAGIIAA~---------gnN~~Gi~GVAP~AkLi~vKVld~~G--------~G~~sdI~~AI~yA~~~GA~VI 439 (639)
T PTZ00262 377 DNYHGTHVSGIISAI---------GNNNIGIVGVDKRSKLIICKALDSHK--------LGRLGDMFKCFDYCISREAHMI 439 (639)
T ss_pred CCCcchHHHHHHhcc---------ccCCCceeeeecccccceEEEecCCC--------CccHHHHHHHHHHHHHCCCCEE
Confidence 369999999999997 33334468999999999999998766 3788999999999999999999
Q ss_pred EEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCC--------------CC----CCCceEEecccccCc
Q 008679 81 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--------------SN----LAPWLITVGAGSLDR 142 (557)
Q Consensus 81 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--------------~~----~ap~vitVga~~~~~ 142 (557)
|||||+. .....+..++.+|.++|++||+||||+|+..... +. ..|+||+|||...+.
T Consensus 440 NmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 440 NGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred EeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 9999982 2345678888999999999999999998642211 10 124556666531100
Q ss_pred ceeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHH
Q 008679 143 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEV 222 (557)
Q Consensus 143 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~ 222 (557)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC
Q 008679 223 KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL 302 (557)
Q Consensus 223 ~~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~ 302 (557)
......+.||.+|.
T Consensus 516 ---------------------------------------------------------------~~~~s~s~~Snyg~--- 529 (639)
T PTZ00262 516 ---------------------------------------------------------------NNQYSLSPNSFYSA--- 529 (639)
T ss_pred ---------------------------------------------------------------CCcccccccccCCC---
Confidence 00012334555542
Q ss_pred CCCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 008679 303 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 382 (557)
Q Consensus 303 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 382 (557)
.++||+|||++|+++++. +.|..++|||||||||||++|||++++|+|++.+|+++|++||.+
T Consensus 530 ----~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~ 592 (639)
T PTZ00262 530 ----KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQ 592 (639)
T ss_pred ----CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCcc
Confidence 245999999999999886 689999999999999999999999999999999999999999987
Q ss_pred cCCCCCcccCCCCCCCCCCeeeccccCccCcCCCCcee
Q 008679 383 KNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVY 420 (557)
Q Consensus 383 ~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~ 420 (557)
+... ++...++|+||+.+|++..+-+
T Consensus 593 l~~~------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 593 LPSL------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCCC------------CCccccCcEEcHHHHHHHHHhc
Confidence 6431 1222234899999999876644
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4.9e-41 Score=333.48 Aligned_cols=200 Identities=30% Similarity=0.357 Sum_probs=166.2
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+. . .+.||||+|+|+.+|++.+.+ .+..+.++++|++|++.++||||
T Consensus 45 ~gHGT~VAGiIa~~~---------~---~~~GvAp~a~l~~~~v~~~~~--------~~~~~~~~~a~~~a~~~~~~Vin 104 (255)
T cd07479 45 LGHGTFVAGVIASSR---------E---QCLGFAPDAEIYIFRVFTNNQ--------VSYTSWFLDAFNYAILTKIDVLN 104 (255)
T ss_pred CCcHHHHHHHHHccC---------C---CceeECCCCEEEEEEeecCCC--------CchHHHHHHHHHhhhhcCCCEEE
Confidence 489999999999872 1 247999999999999998765 36677899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCC--CCceEEecccccCcceeeeEEeCCCcEEEee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL--APWLITVGAGSLDRDFVGPVVLGTGMEIIGK 159 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~--ap~vitVga~~~~~~~~~~~~~~~~~~~~g~ 159 (557)
||||.. .+.+.++..++.++.++|++||+||||+|+...+...+ .+++|+||+...
T Consensus 105 ~S~G~~---~~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------------- 162 (255)
T cd07479 105 LSIGGP---DFMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------------- 162 (255)
T ss_pred eeccCC---CCCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------------
Confidence 999983 23445677777888899999999999999865554433 478899987311
Q ss_pred eeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC
Q 008679 160 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG 239 (557)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~ 239 (557)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCCeeeecC
Q 008679 240 NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAPG 315 (557)
Q Consensus 240 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG 315 (557)
.+.++.|||||++.. ..+++||||.|||
T Consensus 163 ------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG 194 (255)
T cd07479 163 ------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYG 194 (255)
T ss_pred ------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecC
Confidence 256789999996531 1377899999999
Q ss_pred CcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHccccccC
Q 008679 316 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTAWMKN 384 (557)
Q Consensus 316 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p----~~s~~~ik~~L~~TA~~~~ 384 (557)
.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 195 ~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 195 SGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999988664 5788999999999999999999999998 7899999999999999864
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.1e-39 Score=339.14 Aligned_cols=239 Identities=31% Similarity=0.400 Sum_probs=186.8
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecC--CCCCCccCCCCCCHHHHHHHHHHHHHCCCcE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA--TPKASKAAGNTCFEADMLAAIDDAIRDGVHV 79 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~--~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdV 79 (557)
.+|||||||||+|...... ....+.||||+|+|+.+|+++. .. .+....+++|++++++.|++|
T Consensus 82 ~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~--------~~~~~~~~~ai~~a~~~g~~V 147 (346)
T cd07475 82 SSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG--------STYDDAYAKAIEDAVKLGADV 147 (346)
T ss_pred CCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC--------CCCHHHHHHHHHHHHHcCCCE
Confidence 5899999999999843211 1335689999999999999974 32 478888999999999999999
Q ss_pred EEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCC----------------CCCCceEEecccccCcc
Q 008679 80 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------------NLAPWLITVGAGSLDRD 143 (557)
Q Consensus 80 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~----------------~~ap~vitVga~~~~~~ 143 (557)
||||||...........+..++.++.++|++||+||||+|....... ...+++|+||+...
T Consensus 148 in~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~--- 224 (346)
T cd07475 148 INMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK--- 224 (346)
T ss_pred EEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc---
Confidence 99999995433355567888888999999999999999985432211 11244455544210
Q ss_pred eeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHh
Q 008679 144 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 223 (557)
Q Consensus 144 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~ 223 (557)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCC
Q 008679 224 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALD 303 (557)
Q Consensus 224 ~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~ 303 (557)
.......+.++.||+|||+..
T Consensus 225 ----------------------------------------------------------~~~~~~~~~~~~~S~~G~~~~- 245 (346)
T cd07475 225 ----------------------------------------------------------KVPNPNGGQMSGFSSWGPTPD- 245 (346)
T ss_pred ----------------------------------------------------------ccCCCCCCccCCCcCCCCCcc-
Confidence 000122467889999999986
Q ss_pred CCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhh----CCCCCHHH----HHHH
Q 008679 304 PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAA----IRSA 375 (557)
Q Consensus 304 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~p~~s~~~----ik~~ 375 (557)
+++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++
T Consensus 246 -~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~ 311 (346)
T cd07475 246 -LDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNL 311 (346)
T ss_pred -cCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 89999999999999998865 68899999999999999999999998 78899876 8889
Q ss_pred HHccccccCCCCCcccCCCCCCCCCCeeeccccCccCcCC
Q 008679 376 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 376 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 415 (557)
|++||.+.... ...+..+.+.++|+|+||+.+||+
T Consensus 312 l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 312 LMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 99999953221 123456778899999999999985
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-39 Score=320.35 Aligned_cols=203 Identities=29% Similarity=0.322 Sum_probs=167.2
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|+. ... .|+||+|+|+.+|++...+. ...+...++++||+||++.|++|||
T Consensus 36 ~~HGT~vAgiia~~~---------~~~---~Gvap~a~i~~~~v~~~~~~-----~~~~~~~~i~~ai~~a~~~g~~VIn 98 (239)
T cd05561 36 SAHGTAVASLLAGAG---------AQR---PGLLPGADLYGADVFGRAGG-----GEGASALALARALDWLAEQGVRVVN 98 (239)
T ss_pred CCCHHHHHHHHhCCC---------CCC---cccCCCCEEEEEEEecCCCC-----CCCcCHHHHHHHHHHHHHCCCCEEE
Confidence 699999999999872 211 69999999999999886531 0136788899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 160 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~ 160 (557)
||||.. ....++.++.++.++|++||+||||+|+.. ..++...+++|+|++...
T Consensus 99 ~S~g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 99 ISLAGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred eCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 999972 235677888899999999999999999653 234444578888886311
Q ss_pred eccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC
Q 008679 161 VTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN 240 (557)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~ 240 (557)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEe
Q 008679 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILA 320 (557)
Q Consensus 241 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 320 (557)
.+.+++||++|+.. ||.|||.+|++
T Consensus 154 -----------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~ 178 (239)
T cd05561 154 -----------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWV 178 (239)
T ss_pred -----------------------------------------------CCCccccCCCCCcc--------eEEccccceec
Confidence 24567899999865 99999999999
Q ss_pred cccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCCCCCCCC
Q 008679 321 AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATP 400 (557)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 400 (557)
+.+. +.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+
T Consensus 179 ~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d 233 (239)
T cd05561 179 AAPG-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRD 233 (239)
T ss_pred ccCC-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcC
Confidence 8765 6899999999999999999999999999 9999999999999997753 2356
Q ss_pred Ceeecc
Q 008679 401 FSFGSG 406 (557)
Q Consensus 401 ~~~G~G 406 (557)
..||||
T Consensus 234 ~~~G~G 239 (239)
T cd05561 234 PVFGYG 239 (239)
T ss_pred CCcCCC
Confidence 678887
No 9
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-39 Score=327.77 Aligned_cols=231 Identities=40% Similarity=0.567 Sum_probs=184.9
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||+|+|.. .....+.|+||+|+|+.+|++.... .+...+++++|+++++++++|||
T Consensus 62 ~~HGT~vAgiiag~~---------~n~~~~~Giap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~Iin 124 (295)
T cd07474 62 TGHGTHVAGIIAGNG---------VNVGTIKGVAPKADLYAYKVLGPGG--------SGTTDVIIAAIEQAVDDGMDVIN 124 (295)
T ss_pred CCcHHHHHHHHhcCC---------CccCceEeECCCCeEEEEEeecCCC--------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 589999999999883 2234568999999999999998554 37888999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCC--CCCCceEEecccccCcceeeeEEeCCCcEEEee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 159 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~ 159 (557)
||||... ....+.+..+++++.++|+++|+||||+|....... ...+++|+||+.....
T Consensus 125 ~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------- 185 (295)
T cd07474 125 LSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------- 185 (295)
T ss_pred eCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------
Confidence 9999832 234577888899999999999999999987655543 3468999999843100
Q ss_pred eeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC
Q 008679 160 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG 239 (557)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~ 239 (557)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCC-CCCCCCCCCcCCeeeecCCcE
Q 008679 240 NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSR-GPNALDPYILKPDITAPGLNI 318 (557)
Q Consensus 240 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-GP~~~~~~~lKPDI~APG~~I 318 (557)
.........|+++ |+.. ...+||||+|||++|
T Consensus 186 ---------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i 218 (295)
T cd07474 186 ---------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDI 218 (295)
T ss_pred ---------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCce
Confidence 0001233345554 4554 388999999999999
Q ss_pred EecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCCCCCC
Q 008679 319 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 398 (557)
Q Consensus 319 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 398 (557)
++++... ...|..++|||||||+|||++|||+|++|+|++++||++|++||.+....+ ....
T Consensus 219 ~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~-------~~~~ 280 (295)
T cd07474 219 MSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD-------GVVY 280 (295)
T ss_pred EeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC-------CCcC
Confidence 9998763 157899999999999999999999999999999999999999999876532 1123
Q ss_pred CCCeeeccccCccCc
Q 008679 399 TPFSFGSGHFRPTKA 413 (557)
Q Consensus 399 ~~~~~G~G~vn~~~A 413 (557)
++..+|+|+||+.+|
T Consensus 281 ~~~~~G~G~l~~~~A 295 (295)
T cd07474 281 PVSRQGAGRVDALRA 295 (295)
T ss_pred ChhccCcceeccccC
Confidence 567899999999886
No 10
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-39 Score=327.26 Aligned_cols=230 Identities=32% Similarity=0.370 Sum_probs=188.2
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|.... ..+.||||+|+|+.+|++...+ ....+.++++|++|++++++|||
T Consensus 68 ~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 68 QGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCSG--------STTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCCC--------CCCHHHHHHHHHHHHhcCCCEEE
Confidence 58999999999987321 3458999999999999998655 37788899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCCCCCceEEecccccCcceeeeEEeCCCcEEEe
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 158 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g 158 (557)
||||.. ..+..+.+...+.++.++|+++|+||||+|..... .+...+++|+||+..
T Consensus 130 ~S~g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------- 188 (312)
T cd07489 130 ASLGGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------- 188 (312)
T ss_pred eCCCcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------
Confidence 999983 34455778888888999999999999999864322 223457888887520
Q ss_pred eeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC
Q 008679 159 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 238 (557)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~ 238 (557)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcE
Q 008679 239 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 318 (557)
Q Consensus 239 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 318 (557)
+.||+|||+.. ...||||+|||++|
T Consensus 189 -----------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i 213 (312)
T cd07489 189 -----------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNI 213 (312)
T ss_pred -----------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCE
Confidence 47899999986 88999999999999
Q ss_pred EecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHccccccCCCCCcccCCCCCC
Q 008679 319 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTAWMKNNKALPITNADGSI 397 (557)
Q Consensus 319 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 397 (557)
+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-. ...+
T Consensus 214 ~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~ 280 (312)
T cd07489 214 LSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDL 280 (312)
T ss_pred EEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCC
Confidence 99987632 369999999999999999999999999 999999999999999998765321110 0114
Q ss_pred CCCCeeeccccCccCcCCCCc
Q 008679 398 ATPFSFGSGHFRPTKAADPGL 418 (557)
Q Consensus 398 ~~~~~~G~G~vn~~~A~~~~l 418 (557)
++..++|+|+||+.+|++..-
T Consensus 281 ~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 281 APVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred CCHhhcCcceeeHHHHhcCCc
Confidence 577899999999999999643
No 11
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=9.8e-39 Score=318.54 Aligned_cols=201 Identities=30% Similarity=0.333 Sum_probs=169.3
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+.. ..+.||||+|+|+.+|++..... .+...++++||++|++.|+||||
T Consensus 50 ~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~-------~~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 50 SAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRR-------GCSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCC-------CCCHHHHHHHHHHHHHCCCCEEE
Confidence 6999999999998731 13589999999999999876542 35578899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 161 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 161 (557)
||||...........+..++..+.++|++||+||||+|......+...|++|+||+...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 99998433334456678888899999999999999999776666666799999997321
Q ss_pred ccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc
Q 008679 162 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241 (557)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~ 241 (557)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEec
Q 008679 242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 321 (557)
Q Consensus 242 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 321 (557)
.+.++.||+||+.. .||||+|||.+|+++
T Consensus 171 ----------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~ 199 (267)
T cd07476 171 ----------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGA 199 (267)
T ss_pred ----------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceee
Confidence 13456899999854 389999999999999
Q ss_pred ccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHccccccCC
Q 008679 322 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTAWMKNN 385 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~----~s~~~ik~~L~~TA~~~~~ 385 (557)
.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||.++..
T Consensus 200 ~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 200 ALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred cCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 876 68999999999999999999999999886 9999999999999998864
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-38 Score=317.58 Aligned_cols=202 Identities=32% Similarity=0.358 Sum_probs=163.7
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 80 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVI 80 (557)
++||||||||||+|+. .+.+.||||+|+|+.+|++..... .......+++|+++|.+.|++||
T Consensus 46 ~~~HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~------~~~~~~~~~~ai~~a~~~~v~VI 108 (261)
T cd07493 46 DDDHGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASE------TPVEEDNWVAAAEWADSLGVDII 108 (261)
T ss_pred CCCchhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCc------ccccHHHHHHHHHHHHHcCCCEE
Confidence 3699999999999872 133689999999999998764331 02456678999999999999999
Q ss_pred EEecCCCCCCCC-----------CcchHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCCCCCceEEecccccCcceee
Q 008679 81 SISIGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVG 146 (557)
Q Consensus 81 n~SlG~~~~~~~-----------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~ap~vitVga~~~~~~~~~ 146 (557)
|||||....... ....+..+++.+.++|++||+||||+|... ...+...+++|+||+...
T Consensus 109 n~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~------ 182 (261)
T cd07493 109 SSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA------ 182 (261)
T ss_pred EeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc------
Confidence 999998432111 123567788889999999999999999762 333444689999987311
Q ss_pred eEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcC
Q 008679 147 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 226 (557)
Q Consensus 147 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 226 (557)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 008679 227 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 306 (557)
Q Consensus 227 a~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~ 306 (557)
.+.++.||++||..+ ++
T Consensus 183 -------------------------------------------------------------~~~~~~~S~~G~~~~--~~ 199 (261)
T cd07493 183 -------------------------------------------------------------NGNKASFSSIGPTAD--GR 199 (261)
T ss_pred -------------------------------------------------------------CCCCCccCCcCCCCC--CC
Confidence 245678999999885 89
Q ss_pred cCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 307 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 307 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
+||||+|||.+|++.... +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 200 ~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 200 LKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999985443 67899999999999999999999999999999999999999985
No 13
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-38 Score=324.45 Aligned_cols=200 Identities=61% Similarity=0.906 Sum_probs=170.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||||+...+.... |...+.+.||||+|+|+.+|+++... .+..+++++||++|++++++|||
T Consensus 108 ~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~kv~~~~~--------~~~~~~~~~ai~~a~~~g~~Vin 178 (307)
T cd04852 108 DGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYKVCWPDG--------GCFGSDILAAIDQAIADGVDVIS 178 (307)
T ss_pred CCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEEEecCCC--------CccHHHHHHHHHHHHHcCCCEEE
Confidence 5899999999999976655444 55667789999999999999998744 38899999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 161 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 161 (557)
||||.... ....+.+..++..+.++|++||+||||+|+...+..+..||+++||+.
T Consensus 179 ~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~----------------------- 234 (307)
T cd04852 179 YSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS----------------------- 234 (307)
T ss_pred eCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec-----------------------
Confidence 99999432 456677888888999999999999999998777788888999999962
Q ss_pred ccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc
Q 008679 162 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241 (557)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~ 241 (557)
T Consensus 235 -------------------------------------------------------------------------------- 234 (307)
T cd04852 235 -------------------------------------------------------------------------------- 234 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEec
Q 008679 242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 321 (557)
Q Consensus 242 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 321 (557)
. +||||+|||.+|+++
T Consensus 235 -----------------------------------------------~-----------------~~~di~apG~~i~~~ 250 (307)
T cd04852 235 -----------------------------------------------T-----------------LKPDIAAPGVDILAA 250 (307)
T ss_pred -----------------------------------------------c-----------------CccceeeccCceeec
Confidence 0 578999999999999
Q ss_pred ccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 322 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
++... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||.
T Consensus 251 ~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 251 WTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 87421 1112223478999999999999999999999999999999999999999984
No 14
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.9e-38 Score=321.22 Aligned_cols=196 Identities=27% Similarity=0.347 Sum_probs=155.1
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|... ....+.||||+|+|+.+|++.... ....++++||+||++.|++|||
T Consensus 85 ~gHGT~VAGiIaa~~~---------n~~g~~GvAp~a~i~~~k~~~~g~---------~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 85 ADHGTHVAGIIAAVRD---------NGIGIDGVADNVKIMPLRIVPNGD---------ERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred CCcHHHHHHHHhCcCC---------CCCceEEECCCCEEEEEEEecCCC---------cCHHHHHHHHHHHHHCCCcEEE
Confidence 5899999999998732 222368999999999999986432 6678899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCC-----------CCCCceEEecccccCcceeeeEEe
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-----------NLAPWLITVGAGSLDRDFVGPVVL 150 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~-----------~~ap~vitVga~~~~~~~~~~~~~ 150 (557)
||||... ......+..++..+.++|+++|+||||+|....... ...+.+|+||+....
T Consensus 147 ~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--------- 215 (291)
T cd07483 147 MSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--------- 215 (291)
T ss_pred eCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---------
Confidence 9999732 223345777888899999999999999985421111 112455555542110
Q ss_pred CCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEE
Q 008679 151 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 230 (557)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gv 230 (557)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCe
Q 008679 231 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 310 (557)
Q Consensus 231 i~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 310 (557)
.....++.||++|+. +||
T Consensus 216 -------------------------------------------------------~~~~~~~~~Sn~G~~-------~vd 233 (291)
T cd07483 216 -------------------------------------------------------YENNLVANFSNYGKK-------NVD 233 (291)
T ss_pred -------------------------------------------------------CCcccccccCCCCCC-------ceE
Confidence 001346789999974 459
Q ss_pred eeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 311 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 311 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
|.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 234 i~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 234 VFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999876 68999999999999999999999999999999999999999984
No 15
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-38 Score=322.75 Aligned_cols=233 Identities=25% Similarity=0.205 Sum_probs=164.7
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCC---C
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG---V 77 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~g---v 77 (557)
++||||||||||++.... .....|+||+++|+.+||+...+... ......++++||+++++.+ +
T Consensus 37 ~~gHGT~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~~~----~~~~~~~~~~ai~~a~~~~~~~~ 103 (291)
T cd04847 37 DLGHGTAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGEND----PELYGDITLRAIRRAVIQNPDIV 103 (291)
T ss_pred CCCChHHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCCCC----ccChHHHHHHHHHHHHHhCCCce
Confidence 469999999999975321 22347999999999999998763100 0256778999999999853 4
Q ss_pred cEEEEecCCCCCCCCCc-chHHHHHHH-HHhCCcEEEEecCCCCCCCCCC------------CCCCCceEEecccccCcc
Q 008679 78 HVLSISIGTNQPFAFNR-DGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRD 143 (557)
Q Consensus 78 dVIn~SlG~~~~~~~~~-~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~------------~~~ap~vitVga~~~~~~ 143 (557)
+|||||||......... ..+..++++ +.++|++||+||||+|...... +..++++|+|||...+..
T Consensus 104 ~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~ 183 (291)
T cd04847 104 RVFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDD 183 (291)
T ss_pred eEEEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCcc
Confidence 99999999943322111 245556654 6689999999999999765432 223579999998654321
Q ss_pred eeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHh
Q 008679 144 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 223 (557)
Q Consensus 144 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~ 223 (557)
......
T Consensus 184 ~~~~s~-------------------------------------------------------------------------- 189 (291)
T cd04847 184 ITDRAR-------------------------------------------------------------------------- 189 (291)
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 100000
Q ss_pred hcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCC
Q 008679 224 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALD 303 (557)
Q Consensus 224 ~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~ 303 (557)
. ........+.||||||...
T Consensus 190 -----------~------------------------------------------------~~~~~~~~~~fs~~Gp~~~- 209 (291)
T cd04847 190 -----------Y------------------------------------------------SAVGPAPAGATTSSGPGSP- 209 (291)
T ss_pred -----------c------------------------------------------------cccccccCCCccccCCCCC-
Confidence 0 0000112334999999986
Q ss_pred CCCcCCeeeecCCcEEecccCCCCC-----CccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHc
Q 008679 304 PYILKPDITAPGLNILAAWSEASSP-----SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 378 (557)
Q Consensus 304 ~~~lKPDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 378 (557)
+.+||||+|||++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++
T Consensus 210 -~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~ 288 (291)
T cd04847 210 -GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIH 288 (291)
T ss_pred -CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 999999999999998865421100 00001112368999999999999999999999999999999999999999
Q ss_pred ccc
Q 008679 379 TAW 381 (557)
Q Consensus 379 TA~ 381 (557)
||+
T Consensus 289 sA~ 291 (291)
T cd04847 289 SAE 291 (291)
T ss_pred hcC
Confidence 985
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-37 Score=310.35 Aligned_cols=215 Identities=33% Similarity=0.438 Sum_probs=175.6
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHC----CC
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 77 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~----gv 77 (557)
.||||||||||+|..... ...+.||||+|+|+.+|+++..+ .....++++||+++++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~~--------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDSG--------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCCC--------CccHHHHHHHHHHHHhhccccCc
Confidence 599999999999884221 33468999999999999998776 36788899999999998 99
Q ss_pred cEEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCC--CCCCCCceEEecccccCcceeeeEEeCCCcE
Q 008679 78 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--LSNLAPWLITVGAGSLDRDFVGPVVLGTGME 155 (557)
Q Consensus 78 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~ap~vitVga~~~~~~~~~~~~~~~~~~ 155 (557)
+|||||||.........+.+..+++++.++|++||+||||++....+ .+...+++|+||+...+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 99999999954445577889999999999999999999999977653 3344689999998432110
Q ss_pred EEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeC
Q 008679 156 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 235 (557)
Q Consensus 156 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~ 235 (557)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecC
Q 008679 236 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 315 (557)
Q Consensus 236 ~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG 315 (557)
....++.||++||+.. +++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCCC--CCcCCCEEccc
Confidence 0134678999999986 89999999999
Q ss_pred CcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 316 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 316 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
.+|+++.+.... ......+.|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 203 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999998654210 01122368999999999999999999999999999999999999999985
No 17
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.5e-37 Score=310.76 Aligned_cols=196 Identities=34% Similarity=0.397 Sum_probs=164.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHH-------
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 74 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~------- 74 (557)
+||||||||||+|... . +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 52 ~~HGT~vagii~g~~~---------~-~~~~GvAp~a~i~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDG---------D-GQQIGVAPGARWIACRALDRNG---------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCC---------C-CCceEECCCCeEEEEEeecCCC---------CcHHHHHHHHHHHHhccccccc
Confidence 5899999999998731 1 1238999999999999998654 778889999999975
Q ss_pred -----CCCcEEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCCCCCceEEecccccCcceee
Q 008679 75 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 146 (557)
Q Consensus 75 -----~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~ 146 (557)
.++||||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+...
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998321 24556667778889999999999999865433 2344588888887321
Q ss_pred eEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcC
Q 008679 147 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 226 (557)
Q Consensus 147 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 226 (557)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 008679 227 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 306 (557)
Q Consensus 227 a~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~ 306 (557)
.+.++.||++||... +.
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~~--~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPSTY--GR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCCC--CC
Confidence 256779999999986 88
Q ss_pred cCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 008679 307 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTAW 381 (557)
Q Consensus 307 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~--~s~~~ik~~L~~TA~ 381 (557)
+||||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999876 68899999999999999999999999999 999999999999985
No 18
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-36 Score=299.70 Aligned_cols=202 Identities=30% Similarity=0.307 Sum_probs=165.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+. .....+.||||+|+|+.+|++.... .+...++.+++++|++.+++|||
T Consensus 40 ~~HGT~vAgiiag~~---------~~~~~~~Gvap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~Vin 102 (242)
T cd07498 40 DGHGTACAGVAAAVG---------NNGLGVAGVAPGAKLMPVRIADSLG--------YAYWSDIAQAITWAADNGADVIS 102 (242)
T ss_pred CCCHHHHHHHHHhcc---------CCCceeEeECCCCEEEEEEEECCCC--------CccHHHHHHHHHHHHHCCCeEEE
Confidence 689999999999873 2233468999999999999998765 37788899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 160 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~ 160 (557)
||||...........+..++..+++ +|++||+||||+|......+...+++|+||+.+.
T Consensus 103 ~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------- 162 (242)
T cd07498 103 NSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS-------------------- 162 (242)
T ss_pred eccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC--------------------
Confidence 9999844333445667777888888 9999999999999776665666799999997421
Q ss_pred eccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC
Q 008679 161 VTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN 240 (557)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~ 240 (557)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEe
Q 008679 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILA 320 (557)
Q Consensus 241 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 320 (557)
.+.+++||+|||.. |+.|||.++..
T Consensus 163 -----------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~ 187 (242)
T cd07498 163 -----------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWT 187 (242)
T ss_pred -----------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCccc
Confidence 24567899999976 99999999988
Q ss_pred cccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 008679 321 AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 379 (557)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 379 (557)
....... ......+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 188 ~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 188 TGTGRGS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCccccc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 7543211 011123678999999999999999999999999999999999999976
No 19
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-36 Score=299.62 Aligned_cols=211 Identities=32% Similarity=0.368 Sum_probs=161.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|+.. ++.+.||||+++|+.+|++...+ +...+++++|+++++.+++|||
T Consensus 43 ~~HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~~---------~~~~~~~~ai~~a~~~~~~Vin 103 (254)
T cd07490 43 GGHGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDGG---------GSLSQIIAGMEWAVEKDADVVS 103 (254)
T ss_pred CCcHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCCC---------CcHHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999832 23357999999999999998654 7788999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 160 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~ 160 (557)
||||.... ..+++..+++...+ +|++||+||||+|......+...+++|+||+...+.......
T Consensus 104 ~S~g~~~~---~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s------------ 168 (254)
T cd07490 104 MSLGGTYY---SEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS------------ 168 (254)
T ss_pred ECCCcCCC---CCcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc------------
Confidence 99998332 15667766666554 699999999999977555555679999999864322100000
Q ss_pred eccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC
Q 008679 161 VTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN 240 (557)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~ 240 (557)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEe
Q 008679 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILA 320 (557)
Q Consensus 241 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 320 (557)
..........+++|... ....||||.|||.+|++
T Consensus 169 ---------------------------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~ 202 (254)
T cd07490 169 ---------------------------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYS 202 (254)
T ss_pred ---------------------------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEc
Confidence 00011222333444432 26689999999999998
Q ss_pred cccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 321 AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
+..... ..+.|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 203 ~~~~~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 203 ARQGAN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cccCCC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 653211 1268999999999999999999999999999999999999999984
No 20
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-36 Score=302.44 Aligned_cols=202 Identities=27% Similarity=0.334 Sum_probs=161.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH--------
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-------- 73 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~-------- 73 (557)
.||||||||||+|... ....+.||||+|+|+.+|+++..+ ....++++|++|++
T Consensus 71 ~~HGT~vAgiiaa~~~---------~~~~~~GvAp~a~i~~~~v~~~~~---------~~~~~i~~a~~~a~~~~~~~~~ 132 (285)
T cd07496 71 SWHGTHVAGTIAAVTN---------NGVGVAGVAWGARILPVRVLGKCG---------GTLSDIVDGMRWAAGLPVPGVP 132 (285)
T ss_pred CCCHHHHHHHHhCcCC---------CCCCceeecCCCeEEEEEEecCCC---------CcHHHHHHHHHHHhccCcCCCc
Confidence 4799999999999832 223458999999999999998765 57888999999998
Q ss_pred --HCCCcEEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccCcceeeeEEe
Q 008679 74 --RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVL 150 (557)
Q Consensus 74 --~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~ 150 (557)
+++++|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+||+...
T Consensus 133 ~~~~~~~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 199 (285)
T cd07496 133 VNPNPAKVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------- 199 (285)
T ss_pred ccCCCCeEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------
Confidence 4678999999998321 146678888899999999999999999765 344455688999987321
Q ss_pred CCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEE
Q 008679 151 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 230 (557)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gv 230 (557)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCe
Q 008679 231 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 310 (557)
Q Consensus 231 i~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 310 (557)
.+.++.||++||.. |
T Consensus 200 ---------------------------------------------------------~~~~~~~S~~g~~v--------d 214 (285)
T cd07496 200 ---------------------------------------------------------RGQRASYSNYGPAV--------D 214 (285)
T ss_pred ---------------------------------------------------------CCCcccccCCCCCC--------C
Confidence 24567899999975 9
Q ss_pred eeecCCcEEecccCCCCCC--ccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 008679 311 ITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 379 (557)
Q Consensus 311 I~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 379 (557)
|.|||++|.+......... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 215 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 215 VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999998876532100 00111223578999999999999999999999999999999999999876
No 21
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.1e-35 Score=295.55 Aligned_cols=204 Identities=29% Similarity=0.337 Sum_probs=163.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+....... +|.+ .+.|+||+|+|+.+|++.... .+....++++|++|++.|++|||
T Consensus 61 ~gHGT~VAgiia~~~~~~~~~-g~i~--~~~gvap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a~~~g~~Vin 129 (273)
T cd07485 61 GGHGTHVAGTIAAVNNNGGGV-GGIA--GAGGVAPGVKIMSIQIFAGRY--------YVGDDAVAAAIVYAADNGAVILQ 129 (273)
T ss_pred CCCHHHHHHHHHcccCCCcce-eccc--cccccCCCCEEEEEEEECCCC--------CccHHHHHHHHHHHHHcCCcEEE
Confidence 589999999999874221111 0111 235699999999999998765 37888899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCc
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 154 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~ 154 (557)
||||.... ..+...+..++..+.++ |++||+||||++......+...+++|+|++...
T Consensus 130 ~S~g~~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------- 194 (273)
T cd07485 130 NSWGGTGG-GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------- 194 (273)
T ss_pred ecCCCCCc-cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------
Confidence 99998321 23455677778888888 999999999999776655566688999987321
Q ss_pred EEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEe
Q 008679 155 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 234 (557)
Q Consensus 155 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n 234 (557)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeec
Q 008679 235 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 314 (557)
Q Consensus 235 ~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 314 (557)
.+.++.||++|+.. ||.||
T Consensus 195 -----------------------------------------------------~~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 195 -----------------------------------------------------NDNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred -----------------------------------------------------CCCcCccccCCCce--------EEEeC
Confidence 24566899999865 99999
Q ss_pred CC-cEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 008679 315 GL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 379 (557)
Q Consensus 315 G~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~-~s~~~ik~~L~~T 379 (557)
|. .|+++++..... ..+.|..++|||||||+|||++|||+|++|+ |+++|||++|++|
T Consensus 214 G~~~i~~~~~~~~~~-------~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDGD-------GGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccCC-------CCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 999887753211 1257999999999999999999999999999 9999999999986
No 22
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.8e-36 Score=305.84 Aligned_cols=232 Identities=36% Similarity=0.443 Sum_probs=179.8
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-HCCCcE
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHV 79 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~-~~gvdV 79 (557)
++||||||||||+|.. . . ......|+||+|+|+.+|++...+ .....++++|++++ +.+++|
T Consensus 45 ~~~HGT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~~---------~~~~~~~~ai~~~~~~~~~~V 107 (282)
T PF00082_consen 45 DNGHGTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNSG---------GTSSDLIEAIEYAVKNDGVDV 107 (282)
T ss_dssp SSSHHHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTTS---------EEHHHHHHHHHHHHHHTTSSE
T ss_pred CCCccchhhhhccccc-c-c------cccccccccccccccccccccccc---------cccccccchhhhhhhccCCcc
Confidence 3589999999999984 2 1 122358999999999999977653 67788999999999 899999
Q ss_pred EEEecCCCC--CCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCC-CC--CCCCceEEecccccCcceeeeEEeCCCc
Q 008679 80 LSISIGTNQ--PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LS--NLAPWLITVGAGSLDRDFVGPVVLGTGM 154 (557)
Q Consensus 80 In~SlG~~~--~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~--~~ap~vitVga~~~~~~~~~~~~~~~~~ 154 (557)
||||||... ........+..+++.+.++|+++|+||||+|+.... +. ...+++|+||+...
T Consensus 108 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------- 173 (282)
T PF00082_consen 108 INLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------- 173 (282)
T ss_dssp EEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------
T ss_pred ccccccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------
Confidence 999998822 112233445667778999999999999999876543 33 33478888886321
Q ss_pred EEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEe
Q 008679 155 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 234 (557)
Q Consensus 155 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n 234 (557)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeec
Q 008679 235 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 314 (557)
Q Consensus 235 ~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 314 (557)
.+.++.||++|+... ++.+||||+||
T Consensus 174 -----------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~ 199 (282)
T PF00082_consen 174 -----------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAP 199 (282)
T ss_dssp -----------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEE
T ss_pred -----------------------------------------------------ccccccccccccccc-ccccccccccc
Confidence 135578999976543 38999999999
Q ss_pred CCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCC
Q 008679 315 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNAD 394 (557)
Q Consensus 315 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 394 (557)
|.+|++.++.... ..|..++|||||||+|||++|||+|++|+|++++||.+|++||.+....+
T Consensus 200 G~~i~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~------- 262 (282)
T PF00082_consen 200 GGNILSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN------- 262 (282)
T ss_dssp CSSEEEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT-------
T ss_pred ccccccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC-------
Confidence 9999888876210 45889999999999999999999999999999999999999999886211
Q ss_pred CCCCCCCeeeccccCccCcCC
Q 008679 395 GSIATPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 395 ~~~~~~~~~G~G~vn~~~A~~ 415 (557)
.......+|+|+||+.+|++
T Consensus 263 -~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 263 -GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp -SSSSHHHHTTSBE-HHHHHH
T ss_pred -CCCCCCCccCChhCHHHHhC
Confidence 22356678999999999874
No 23
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=311.72 Aligned_cols=241 Identities=25% Similarity=0.287 Sum_probs=185.9
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.-|||||||||+|+..+.. ...||||+|+|+.+++.+..- ++..+...+.+||..+++.++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p---------~~NGvAPgaqIvSl~IGD~RL------gsMETgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP---------ELNGVAPGAQIVSLKIGDGRL------GSMETGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCc---------cccCCCCCCEEEEEEecCccc------cccccchHHHHHHHHHHHhcCCEEE
Confidence 3699999999999965432 346999999999999976533 2246777899999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCC---CCceEEecccccCcceeeeEEeCCCcEEEe
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGMEIIG 158 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~---ap~vitVga~~~~~~~~~~~~~~~~~~~~g 158 (557)
||+|-...-+.....++..-..+-++||++|+||||+||...+++.+ .-.||.|||...+........+
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~-------- 446 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSV-------- 446 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhh--------
Confidence 99999443333444566665556689999999999999998888765 3578999985433221111000
Q ss_pred eeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC
Q 008679 159 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 238 (557)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~ 238 (557)
T Consensus 447 -------------------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 447 -------------------------------------------------------------------------------- 446 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcE
Q 008679 239 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 318 (557)
Q Consensus 239 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 318 (557)
-.+.-..+..||||||+.+ |.+--.|.|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCcC--CCcceEEecCCccc
Confidence 0011245778999999996 99999999999998
Q ss_pred EecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHccccccCCCCCcccCCC
Q 008679 319 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPITNAD 394 (557)
Q Consensus 319 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 394 (557)
.+. |... -..-..|+|||||+|+++|.+|||++ .+-.|||.-||.+|++||.++...
T Consensus 480 AsV-P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------- 540 (1304)
T KOG1114|consen 480 ASV-PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------- 540 (1304)
T ss_pred cCC-chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------
Confidence 654 2210 14567899999999999999999965 467899999999999999998652
Q ss_pred CCCCCCCeeeccccCccCcCC
Q 008679 395 GSIATPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 395 ~~~~~~~~~G~G~vn~~~A~~ 415 (557)
.+|.||.|+|++++|.+
T Consensus 541 ----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 ----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----chhccCcceeehhHHHH
Confidence 67899999999999976
No 24
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=9.5e-35 Score=284.48 Aligned_cols=189 Identities=35% Similarity=0.485 Sum_probs=160.1
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 80 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVI 80 (557)
+.+|||||||||++.... ..+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++||
T Consensus 39 ~~~HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~~--------~~~~~~l~~ai~~a~~~~~~Vi 100 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDDG--------SGTYSDIIAGIEWAIENGMDII 100 (229)
T ss_pred CCCCHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCCC--------CcCHHHHHHHHHHHHHCCCCEE
Confidence 368999999999987321 1458999999999999998765 3677889999999999999999
Q ss_pred EEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccCcceeeeEEeCCCcEEEe
Q 008679 81 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 158 (557)
Q Consensus 81 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g 158 (557)
|||||.. .....+..++..+.++|+++|+||||++...... +...+++|+||+...
T Consensus 101 n~S~g~~----~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------ 158 (229)
T cd07477 101 NMSLGGP----SDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------ 158 (229)
T ss_pred EECCccC----CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC------------------
Confidence 9999983 2335567777889999999999999999765554 556789999997421
Q ss_pred eeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC
Q 008679 159 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 238 (557)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~ 238 (557)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcE
Q 008679 239 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 318 (557)
Q Consensus 239 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 318 (557)
.+.+..||++|+.. |+.|||.+|
T Consensus 159 -------------------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i 181 (229)
T cd07477 159 -------------------------------------------------NNNRASFSSTGPEV--------ELAAPGVDI 181 (229)
T ss_pred -------------------------------------------------CCCcCCccCCCCCc--------eEEeCCCCe
Confidence 13456899999854 999999999
Q ss_pred EecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 008679 319 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 379 (557)
Q Consensus 319 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 379 (557)
+++++. +.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 182 ~~~~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 182 LSTYPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred EEecCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999876 688999999999999999999999999999999999999976
No 25
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=8.9e-35 Score=290.30 Aligned_cols=193 Identities=32% Similarity=0.384 Sum_probs=165.3
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 80 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVI 80 (557)
+.||||||||||++... ....+.|+||+|+|+.+|+++... .+...+++++|+++++.|++||
T Consensus 67 ~~~HGT~vagii~~~~~---------~~~~~~Giap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 67 DNGHGTHVAGIIAAATN---------NGTGVAGVAPKAKIMPVKVLDANG--------SGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred CCCcHHHHHHHHhCccC---------CCCceEeECCCCEEEEEEEECCCC--------CcCHHHHHHHHHHHHHCCCeEE
Confidence 36899999999998732 223468999999999999998765 3778899999999999999999
Q ss_pred EEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeee
Q 008679 81 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 160 (557)
Q Consensus 81 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~ 160 (557)
|||||... ....+..++..+.++|++||+||||+|......+...+++|+||+.+.
T Consensus 130 n~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------- 185 (260)
T cd07484 130 NLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ-------------------- 185 (260)
T ss_pred EecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC--------------------
Confidence 99999832 445677788888999999999999999877677777899999997321
Q ss_pred eccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC
Q 008679 161 VTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN 240 (557)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~ 240 (557)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEe
Q 008679 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILA 320 (557)
Q Consensus 241 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 320 (557)
.+..+.||++|+.. |+.|||.+|++
T Consensus 186 -----------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~ 210 (260)
T cd07484 186 -----------------------------------------------DDKRASFSNYGKWV--------DVSAPGGGILS 210 (260)
T ss_pred -----------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEe
Confidence 14556899999764 99999999998
Q ss_pred cccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 008679 321 AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 383 (557)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 383 (557)
..+. +.|..++|||||||+|||++||++|++| |++++||++|++||+++
T Consensus 211 ~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 211 TTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 8765 6899999999999999999999999999 99999999999999875
No 26
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-34 Score=289.26 Aligned_cols=192 Identities=30% Similarity=0.408 Sum_probs=160.3
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+ +.....+.|+||+|+|+.+|++...+ .+...+++++|+++++.+++|||
T Consensus 63 ~~HGT~va~ii~~~---------~~~~~~~~GvAp~a~l~~~~~~~~~~--------~~~~~~~~~a~~~a~~~~~~vin 125 (259)
T cd07473 63 NGHGTHVAGIIGAV---------GNNGIGIAGVAWNVKIMPLKFLGADG--------SGTTSDAIKAIDYAVDMGAKIIN 125 (259)
T ss_pred CCcHHHHHHHHHCc---------CCCCCceEEeCCCCEEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 59999999999987 32333468999999999999998765 37888999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCC--CCCceEEecccccCcceeeeEEeCCCcEE
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSN--LAPWLITVGAGSLDRDFVGPVVLGTGMEI 156 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~ap~vitVga~~~~~~~~~~~~~~~~~~~ 156 (557)
+|||... ....+..++.++.++|++||+||||+|... ..++. ..+++|+||+...
T Consensus 126 ~S~G~~~----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------- 185 (259)
T cd07473 126 NSWGGGG----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------- 185 (259)
T ss_pred eCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------
Confidence 9999832 256777888889999999999999998652 22222 2477888886321
Q ss_pred EeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCC
Q 008679 157 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 157 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~ 236 (557)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCC
Q 008679 237 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 316 (557)
Q Consensus 237 ~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 316 (557)
.+.++.||++||. +||+.|||.
T Consensus 186 ---------------------------------------------------~~~~~~~s~~g~~-------~~~~~apG~ 207 (259)
T cd07473 186 ---------------------------------------------------NDALASFSNYGKK-------TVDLAAPGV 207 (259)
T ss_pred ---------------------------------------------------CCCcCcccCCCCC-------CcEEEeccC
Confidence 2445679999985 459999999
Q ss_pred cEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 317 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 317 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
++++..+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 208 ~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 208 DILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99997655 68999999999999999999999999999999999999999984
No 27
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-35 Score=294.79 Aligned_cols=202 Identities=27% Similarity=0.290 Sum_probs=148.0
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+|||||||+++ .||||+|+|+.+|+++. ...++++||+||++.++||||
T Consensus 61 ~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~~~g~dVIn 109 (298)
T cd07494 61 NGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAISLSPDIIS 109 (298)
T ss_pred CCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHHhcCCCEEE
Confidence 59999999875 48999999999999753 345689999999999999999
Q ss_pred EecCCCCCCCC---------CcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCC
Q 008679 82 ISIGTNQPFAF---------NRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGT 152 (557)
Q Consensus 82 ~SlG~~~~~~~---------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~ 152 (557)
||||....... ....+..++.+|.++|++||+||||++. .++...|+||+||+...+..-..
T Consensus 110 ~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g~~------ 180 (298)
T cd07494 110 NSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDGAR------ 180 (298)
T ss_pred eecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCCcc------
Confidence 99998432111 1234777888899999999999999974 34666799999998533210000
Q ss_pred CcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEE
Q 008679 153 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 232 (557)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~ 232 (557)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCee-
Q 008679 233 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDI- 311 (557)
Q Consensus 233 ~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI- 311 (557)
......+.|+|+ ..+++.|||+
T Consensus 181 -----------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~ 203 (298)
T cd07494 181 -----------------------------------------------------RASSYASGFRSK----IYPGRQVPDVC 203 (298)
T ss_pred -----------------------------------------------------cccccccCcccc----cCCCCccCccc
Confidence 000001112221 1236667776
Q ss_pred ---------------eecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHH
Q 008679 312 ---------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSAL 376 (557)
Q Consensus 312 ---------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L 376 (557)
+|||..|.++...... .......|..++|||||||||||++|||+|++|+|++++||++|
T Consensus 204 ~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l 278 (298)
T cd07494 204 GLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278 (298)
T ss_pred cccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4799999766542100 01112679999999999999999999999999999999999999
Q ss_pred HccccccCC
Q 008679 377 MTTAWMKNN 385 (557)
Q Consensus 377 ~~TA~~~~~ 385 (557)
++||+++..
T Consensus 279 ~~ta~~~~~ 287 (298)
T cd07494 279 NKTARDVTK 287 (298)
T ss_pred HHhCcccCC
Confidence 999997753
No 28
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.5e-34 Score=293.71 Aligned_cols=227 Identities=32% Similarity=0.342 Sum_probs=166.5
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||||+|+...... ...+.||||+|+|+.+|+++..+. .....++..+++++.+.+++|||
T Consensus 54 ~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vin 120 (293)
T cd04842 54 DGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGARISS 120 (293)
T ss_pred CCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCCEEEe
Confidence 69999999999998432110 114689999999999999887642 25566788999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCCCCCCceEEecccccCcceeeeEEeCCCcEE
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 156 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~ 156 (557)
||||..... .......++.++. + +|++||+||||+|.... ..+...+++|+||+.........
T Consensus 121 ~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------- 188 (293)
T cd04842 121 NSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------- 188 (293)
T ss_pred ccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------
Confidence 999994321 1233444554433 3 79999999999997654 44455799999998654321000
Q ss_pred EeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCC
Q 008679 157 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 157 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~ 236 (557)
..|..
T Consensus 189 --------------------------------~~~~~------------------------------------------- 193 (293)
T cd04842 189 --------------------------------EGGLG------------------------------------------- 193 (293)
T ss_pred --------------------------------ccccc-------------------------------------------
Confidence 00000
Q ss_pred CCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCC
Q 008679 237 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 316 (557)
Q Consensus 237 ~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 316 (557)
.......++.||++||+.. +++||||+|||+
T Consensus 194 -----------------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~ 224 (293)
T cd04842 194 -----------------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGT 224 (293)
T ss_pred -----------------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCC
Confidence 0011366889999999986 899999999999
Q ss_pred cEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 008679 317 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTAW 381 (557)
Q Consensus 317 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----p---~~s~~~ik~~L~~TA~ 381 (557)
+|+++..... .........|..++|||||||+|||++|||+|++ | ++++.++|++|++||+
T Consensus 225 ~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 225 GILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999975420 0011223689999999999999999999999985 4 6677899999999985
No 29
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.7e-34 Score=286.01 Aligned_cols=187 Identities=34% Similarity=0.455 Sum_probs=159.2
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHC-----C
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD-----G 76 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~-----g 76 (557)
.||||||||||+++ . .||||+|+|+.+|+++..+ ....+.++++|+++++. +
T Consensus 63 ~~HGT~vAgiia~~---------~------~GvAp~a~i~~~~i~~~~~--------~~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 63 NGHGTHVAGTVGGK---------T------YGVAKKANLVAVKVLDCNG--------SGTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred CccHHHHHHHHHcc---------c------cCcCCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHhcccccCC
Confidence 58999999999976 1 5999999999999998875 36788899999999987 4
Q ss_pred CcEEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccCcceeeeEEeCCCcE
Q 008679 77 VHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 155 (557)
Q Consensus 77 vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~ 155 (557)
++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+||+...
T Consensus 120 ~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------------- 179 (255)
T cd04077 120 PAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------------- 179 (255)
T ss_pred CeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------------
Confidence 899999999822 46677788889999999999999999654 233445689999997421
Q ss_pred EEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeC
Q 008679 156 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 235 (557)
Q Consensus 156 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~ 235 (557)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecC
Q 008679 236 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 315 (557)
Q Consensus 236 ~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG 315 (557)
.+.++.||++||.. ||.|||
T Consensus 180 ----------------------------------------------------~~~~~~~S~~g~~~--------~i~apG 199 (255)
T cd04077 180 ----------------------------------------------------DDARASFSNYGSCV--------DIFAPG 199 (255)
T ss_pred ----------------------------------------------------CCCccCcccCCCCC--------cEEeCC
Confidence 13467899999976 899999
Q ss_pred CcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 008679 316 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 382 (557)
Q Consensus 316 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 382 (557)
.+|.++..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 200 ~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 200 VDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999887421 689999999999999999999999999999999999999999974
No 30
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=4.8e-34 Score=290.13 Aligned_cols=99 Identities=27% Similarity=0.321 Sum_probs=80.6
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
.||||||||+|+|+ +. ..||||+|+|+.+|+++... .....+++++|++|++++++|||
T Consensus 53 ~gHGT~vAgiia~~---------~~----~~GvAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~~~vin 111 (294)
T cd07482 53 LGHGTAVAGQIAAN---------GN----IKGVAPGIGIVSYRVFGSCG--------SAESSWIIKAIIDAADDGVDVIN 111 (294)
T ss_pred CCcHhHHHHHHhcC---------CC----CceeCCCCEEEEEEeecCCC--------CcCHHHHHHHHHHHHHCCCCEEE
Confidence 68999999999987 22 24999999999999998765 25788999999999999999999
Q ss_pred EecCCCCCCCC-------CcchHHHHHHHHHhCCcEEEEecCCCCCC
Q 008679 82 ISIGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPA 121 (557)
Q Consensus 82 ~SlG~~~~~~~-------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~ 121 (557)
||||....... ....+..++..+.++|++||+||||+|..
T Consensus 112 ~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~ 158 (294)
T cd07482 112 LSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLD 158 (294)
T ss_pred eCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcc
Confidence 99998432111 11345667777889999999999999964
No 31
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-34 Score=286.37 Aligned_cols=201 Identities=23% Similarity=0.171 Sum_probs=141.9
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHH----CC
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR----DG 76 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~----~g 76 (557)
++||||||||||||.. +.. .+.||||+|+|+.+|+++ . .+++++|++|++ .+
T Consensus 50 ~~gHGT~VAGiIaa~~---------n~~-G~~GvAp~a~l~~i~v~~--~------------~~~~~ai~~A~~~~~~~~ 105 (277)
T cd04843 50 DSDHGTAVLGIIVAKD---------NGI-GVTGIAHGAQAAVVSSTR--V------------SNTADAILDAADYLSPGD 105 (277)
T ss_pred CCCCcchhheeeeeec---------CCC-ceeeeccCCEEEEEEecC--C------------CCHHHHHHHHHhccCCCC
Confidence 3699999999999862 111 258999999999999975 1 124556666665 45
Q ss_pred CcEEEEecCCCCCCC-----CCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCC----------C---CCCceEEeccc
Q 008679 77 VHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------N---LAPWLITVGAG 138 (557)
Q Consensus 77 vdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~----------~---~ap~vitVga~ 138 (557)
+.+||||||...... .....+..++.++.++|++||+||||++....... . ..|++|+|||.
T Consensus 106 v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~ 185 (277)
T cd04843 106 VILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAG 185 (277)
T ss_pred EEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEec
Confidence 778999999842211 12234556778888999999999999986421111 0 12456666653
Q ss_pred ccCcceeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhh
Q 008679 139 SLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSK 218 (557)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k 218 (557)
..+
T Consensus 186 ~~~----------------------------------------------------------------------------- 188 (277)
T cd04843 186 SST----------------------------------------------------------------------------- 188 (277)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred hHHHhhcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC
Q 008679 219 GMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG 298 (557)
Q Consensus 219 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 298 (557)
.....+.||++|
T Consensus 189 --------------------------------------------------------------------~~~~~~~fSn~G 200 (277)
T cd04843 189 --------------------------------------------------------------------TGHTRLAFSNYG 200 (277)
T ss_pred --------------------------------------------------------------------CCCccccccCCC
Confidence 012378999999
Q ss_pred CCCCCCCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHh----h-CCCCCHHHHH
Q 008679 299 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDWSSAAIR 373 (557)
Q Consensus 299 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~p~~s~~~ik 373 (557)
|.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+++|||
T Consensus 201 ~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~ 269 (277)
T cd04843 201 SRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMR 269 (277)
T ss_pred Ccc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 965 9999999999998763211 0111113457899999999999999999975 3 4999999999
Q ss_pred HHHHcccc
Q 008679 374 SALMTTAW 381 (557)
Q Consensus 374 ~~L~~TA~ 381 (557)
++|++|+.
T Consensus 270 ~~L~~t~~ 277 (277)
T cd04843 270 ELLTATGT 277 (277)
T ss_pred HHHHhcCC
Confidence 99999973
No 32
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-34 Score=288.67 Aligned_cols=222 Identities=28% Similarity=0.329 Sum_probs=153.3
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|+... +...||||+|+|+.+|++.... ......+++||++|++.|++|||
T Consensus 46 ~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~~--------~~~~~~i~~ai~~a~~~g~~Vin 107 (297)
T cd07480 46 HGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGDG--------GGGDGGILAGIQWAVANGADVIS 107 (297)
T ss_pred CCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCCC--------CCcHHHHHHHHHHHHHcCCCEEE
Confidence 68999999999987322 2346999999999999987765 36677799999999999999999
Q ss_pred EecCCCCCC----CC-----CcchHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCCCC---C--CCce
Q 008679 82 ISIGTNQPF----AF-----NRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN---L--APWL 132 (557)
Q Consensus 82 ~SlG~~~~~----~~-----~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~~---~--ap~v 132 (557)
||||..... .+ ....++.....+ .++|++||+||||+|........ + .+.+
T Consensus 108 ~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~ 187 (297)
T cd07480 108 MSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSA 187 (297)
T ss_pred eccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccc
Confidence 999984311 11 112233333333 68999999999999854322211 0 1222
Q ss_pred EEecccccCcceeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCC
Q 008679 133 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 212 (557)
Q Consensus 133 itVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 212 (557)
+.|++..
T Consensus 188 ~~V~~V~------------------------------------------------------------------------- 194 (297)
T cd07480 188 MGVAAVG------------------------------------------------------------------------- 194 (297)
T ss_pred cEEEEEC-------------------------------------------------------------------------
Confidence 2332210
Q ss_pred ccchhhhHHHhhcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc
Q 008679 213 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 292 (557)
Q Consensus 213 ~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 292 (557)
. .+...
T Consensus 195 ----------------------~----------------------------------------------------~~~~~ 200 (297)
T cd07480 195 ----------------------A----------------------------------------------------LGRTG 200 (297)
T ss_pred ----------------------C----------------------------------------------------CCCCC
Confidence 0 11222
Q ss_pred cccCCCCCCCCCCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHH
Q 008679 293 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAI 372 (557)
Q Consensus 293 ~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~i 372 (557)
.|+++.+. ...||||.|||.+|+++++. +.|..++|||||||+|||++|||+|++|++++.++
T Consensus 201 ~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~ 263 (297)
T cd07480 201 NFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRAL 263 (297)
T ss_pred CccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHH
Confidence 33333332 34588999999999998876 68999999999999999999999999999998888
Q ss_pred HHHHHccccccCCCCCcccCCCCCCCCCCeeeccccCcc
Q 008679 373 RSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPT 411 (557)
Q Consensus 373 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 411 (557)
+.+|+......... .........++|+|++++.
T Consensus 264 ~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 264 AALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 77777432221000 0112245678999999874
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-33 Score=270.45 Aligned_cols=179 Identities=22% Similarity=0.263 Sum_probs=146.5
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||++ .+|+++|+.+|+++... .+..+++++||+|+++.|++|||
T Consensus 44 ~gHGT~vAgiia~-------------------~~p~~~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~v~Vin 96 (222)
T cd07492 44 DGHGTACAGIIKK-------------------YAPEAEIGSIKILGEDG--------RCNSFVLEKALRACVENDIRIVN 96 (222)
T ss_pred CCcHHHHHHHHHc-------------------cCCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCCCCEEE
Confidence 5999999999974 35999999999998765 48888999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeeee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 161 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 161 (557)
||||... ......+..++.++.++|+++|+||||++.... .+...+.||+|++...+
T Consensus 97 ~S~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~-------------------- 153 (222)
T cd07492 97 LSLGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTAD-------------------- 153 (222)
T ss_pred eCCCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCC--------------------
Confidence 9999832 223356777888899999999999999986432 24445788888863210
Q ss_pred ccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc
Q 008679 162 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241 (557)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~ 241 (557)
T Consensus 154 -------------------------------------------------------------------------------- 153 (222)
T cd07492 154 -------------------------------------------------------------------------------- 153 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcEEec
Q 008679 242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 321 (557)
Q Consensus 242 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 321 (557)
... +.++ .++|+.|||.+|+++
T Consensus 154 -----------------------------------------------~~~---~~~~--------~~~~~~apg~~i~~~ 175 (222)
T cd07492 154 -----------------------------------------------DPK---SFWY--------IYVEFSADGVDIIAP 175 (222)
T ss_pred -----------------------------------------------CCc---cccc--------CCceEEeCCCCeEee
Confidence 000 1112 245999999999998
Q ss_pred ccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 322 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
++. +.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 176 ~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 176 APH-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred cCC-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 876 68999999999999999999999999999999999999999985
No 34
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-33 Score=277.22 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=91.1
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+ |+||+|+|+.+|+++..+..+. ...+....+++||+||+++|+||||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~~~--~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPDSN--KRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCCCc--ccccCHHHHHHHHHHHHHCCCcEEE
Confidence 589999999995 6899999999999986542100 0125678899999999999999999
Q ss_pred EecCCCCCC--CCCcchHHHHHHHHHhCCcEEEEecCCCCCCCC-CCC--CCCCceEEeccc
Q 008679 82 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLS--NLAPWLITVGAG 138 (557)
Q Consensus 82 ~SlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~--~~ap~vitVga~ 138 (557)
||||...+. ......+..++.+|.++|++||+||||+|.... .+. ...|+||+|||.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 999983321 112567888899999999999999999997654 333 335899999974
No 35
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-34 Score=278.96 Aligned_cols=190 Identities=25% Similarity=0.246 Sum_probs=137.1
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH--HHCCCcE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRDGVHV 79 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A--~~~gvdV 79 (557)
+||||||||||||. .|++|+++|+..++... ....+.++++|+ .+.+++|
T Consensus 37 ~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~~------------~~~~~~~~i~~~~~~~~gv~V 88 (247)
T cd07488 37 DDHATLVASIMGGR----------------DGGLPAVNLYSSAFGIK------------SNNGQWQECLEAQQNGNNVKI 88 (247)
T ss_pred CCHHHHHHHHHHhc----------------cCCCCccceehhhhCCC------------CCCccHHHHHHHHHhcCCceE
Confidence 69999999999987 35679999987655221 112256677777 5679999
Q ss_pred EEEecCCCCCCC-----CCcchHHHHHHHHHhC-CcEEEEecCCCCCCCC---CC--CCCCCceEEecccccCcceeeeE
Q 008679 80 LSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SL--SNLAPWLITVGAGSLDRDFVGPV 148 (557)
Q Consensus 80 In~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~--~~~ap~vitVga~~~~~~~~~~~ 148 (557)
||||||...... +..+.+..+++.+.++ |+++|+||||+|.... .+ +..++++|+|||......
T Consensus 89 INmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----- 163 (247)
T cd07488 89 INHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----- 163 (247)
T ss_pred EEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----
Confidence 999999843322 1234567777776666 9999999999997432 22 223578899997432110
Q ss_pred EeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCce
Q 008679 149 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 228 (557)
Q Consensus 149 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 228 (557)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCC--CCCCCCCCC
Q 008679 229 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSR--GPNALDPYI 306 (557)
Q Consensus 229 gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~ 306 (557)
....+.||++ +|+.. +.
T Consensus 164 -----------------------------------------------------------~~~~s~~sn~~~~~~~~--~~ 182 (247)
T cd07488 164 -----------------------------------------------------------RFFASDVSNAGSEINSY--GR 182 (247)
T ss_pred -----------------------------------------------------------cceecccccccCCCCCC--CC
Confidence 0112345554 45543 78
Q ss_pred cCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCC------HHHHHHHHHccc
Q 008679 307 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS------SAAIRSALMTTA 380 (557)
Q Consensus 307 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s------~~~ik~~L~~TA 380 (557)
.||||+|||++|++ +. +.|..++|||||||||||++|||++++|++. --++|.+|++|+
T Consensus 183 ~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 183 RKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred ceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 99999999999998 22 5788999999999999999999999987765 446777777653
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.9e-32 Score=273.98 Aligned_cols=200 Identities=33% Similarity=0.359 Sum_probs=157.9
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
++|||||||||+|+... ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||
T Consensus 46 ~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vin 108 (267)
T cd04848 46 DSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRIIN 108 (267)
T ss_pred CChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEEE
Confidence 69999999999988322 34589999999999999987541 26677889999999999999999
Q ss_pred EecCCCCCCC-----------CCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCC---------CCCCceEEecccccC
Q 008679 82 ISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSLD 141 (557)
Q Consensus 82 ~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~---------~~ap~vitVga~~~~ 141 (557)
||||...... .....+...+..+.++|+++|+||||++....... ...+++|+||+...+
T Consensus 109 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~ 188 (267)
T cd04848 109 NSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188 (267)
T ss_pred ccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC
Confidence 9999953221 14456667778899999999999999986543332 224678888874321
Q ss_pred cceeeeEEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHH
Q 008679 142 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 221 (557)
Q Consensus 142 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~ 221 (557)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc--ccCCCC
Q 008679 222 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRGP 299 (557)
Q Consensus 222 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP 299 (557)
+.... ||++|+
T Consensus 189 -------------------------------------------------------------------~~~~~~~~s~~~~ 201 (267)
T cd04848 189 -------------------------------------------------------------------GTIASYSYSNRCG 201 (267)
T ss_pred -------------------------------------------------------------------CCcccccccccch
Confidence 12223 488876
Q ss_pred CCCCCCCcCCeeeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 008679 300 NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 379 (557)
Q Consensus 300 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 379 (557)
... .+++.|||.+|+++.+.. ...|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 202 ~~~-----~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~t 265 (267)
T cd04848 202 VAA-----NWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTT 265 (267)
T ss_pred hhh-----hheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 432 457999999999988731 1578999999999999999999999999999999999999999
Q ss_pred cc
Q 008679 380 AW 381 (557)
Q Consensus 380 A~ 381 (557)
|+
T Consensus 266 A~ 267 (267)
T cd04848 266 AT 267 (267)
T ss_pred cC
Confidence 85
No 37
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-33 Score=277.37 Aligned_cols=187 Identities=29% Similarity=0.408 Sum_probs=160.9
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHC-----
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----- 75 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~----- 75 (557)
.+||||||||+|+++ - -|||-+++|+++||+.+++ ++..+++++++|++++.
T Consensus 256 ~nGHGTH~AG~I~sK---------t------~GvAK~s~lvaVKVl~~dG--------sGt~Sdvi~GvE~~~k~h~~~k 312 (501)
T KOG1153|consen 256 CNGHGTHVAGLIGSK---------T------FGVAKNSNLVAVKVLRSDG--------SGTVSDVIKGVEFVVKHHEKKK 312 (501)
T ss_pred cCCCcceeeeeeecc---------c------cccccccceEEEEEeccCC--------cEeHHHHHhHHHHHHHHhhhhh
Confidence 379999999999987 2 4999999999999999998 58999999999999986
Q ss_pred ----CCcEEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccCcceeeeEEe
Q 008679 76 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVL 150 (557)
Q Consensus 76 ----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~ 150 (557)
+..|.|||+|+ +..-.+..|+++|.+.|+++++||||+..+. ++.+..+..+|||||++.
T Consensus 313 ~~~~k~sv~NlSlGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------- 377 (501)
T KOG1153|consen 313 KKEGKKSVANLSLGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------- 377 (501)
T ss_pred cccCCCeEEEEecCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------
Confidence 57899999999 3446688999999999999999999998654 444556789999998642
Q ss_pred CCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEE
Q 008679 151 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 230 (557)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gv 230 (557)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCe
Q 008679 231 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 310 (557)
Q Consensus 231 i~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 310 (557)
.+.++.||+||+.. |
T Consensus 378 ---------------------------------------------------------~D~iA~FSN~G~CV--------d 392 (501)
T KOG1153|consen 378 ---------------------------------------------------------NDTIAFFSNWGKCV--------D 392 (501)
T ss_pred ---------------------------------------------------------ccchhhhcCcccee--------e
Confidence 26789999999998 9
Q ss_pred eeecCCcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHcccc
Q 008679 311 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTAW 381 (557)
Q Consensus 311 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~---------~s~~~ik~~L~~TA~ 381 (557)
|-|||++|+|+|.+.. ......||||||+|||||++|..+.++|. .+|.++|..+..-..
T Consensus 393 iFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 393 IFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999853 46789999999999999999999999873 378888887765544
No 38
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.97 E-value=1e-31 Score=273.54 Aligned_cols=195 Identities=20% Similarity=0.155 Sum_probs=143.2
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
+||||||||||+|+. .......||||+|+|+.+|++... ........++.++.+ .++|||
T Consensus 84 ~gHGT~vAgiiag~~---------~~~~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~Vin 143 (297)
T cd04059 84 NSHGTRCAGEIAAVG---------NNGICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGLNPD-YIDIYS 143 (297)
T ss_pred cccCcceeeEEEeec---------CCCcccccccccceEeEEEecCCc----------cccHHHHHHHhcccC-CceEEE
Confidence 699999999999883 222134799999999999998753 223345555555543 569999
Q ss_pred EecCCCCCCC---CCcchHHHHHHHHHh-----CCcEEEEecCCCCCCCCCC--C--CCCCceEEecccccCcceeeeEE
Q 008679 82 ISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL--S--NLAPWLITVGAGSLDRDFVGPVV 149 (557)
Q Consensus 82 ~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~~--~--~~ap~vitVga~~~~~~~~~~~~ 149 (557)
||||...... ........++.++.+ +|++||+||||+|...... . ...|++|+||+...
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------- 214 (297)
T cd04059 144 NSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA--------- 214 (297)
T ss_pred CCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC---------
Confidence 9999843221 122334445555543 6999999999999732221 1 23478888887321
Q ss_pred eCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceE
Q 008679 150 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 229 (557)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 229 (557)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 008679 230 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 309 (557)
Q Consensus 230 vi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKP 309 (557)
.+.++.||++|+..
T Consensus 215 ----------------------------------------------------------~g~~~~~s~~g~~~-------- 228 (297)
T cd04059 215 ----------------------------------------------------------NGVRASYSEVGSSV-------- 228 (297)
T ss_pred ----------------------------------------------------------CCCCcCCCCCCCcE--------
Confidence 24567899999876
Q ss_pred eeeecCCc-------EEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 008679 310 DITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 381 (557)
Q Consensus 310 DI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 381 (557)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 229 ~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 78999987 66665441 0146788999999999999999999999999999999999999985
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-28 Score=247.65 Aligned_cols=218 Identities=27% Similarity=0.348 Sum_probs=182.4
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 81 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn 81 (557)
-||||.|||+|||.. . -.|.||+++|+++|||-+.. -...+..+.||+||+..++||+|
T Consensus 238 lgHGTFVAGvia~~~-----e--------c~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvLN 296 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGRN-----E--------CLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVLN 296 (1033)
T ss_pred cccceeEeeeeccch-----h--------hcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceEe
Confidence 399999999999873 1 16999999999999998876 37888999999999999999999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCC--CceEEecccccCcceeeeEEeCCCcEEEee
Q 008679 82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIGK 159 (557)
Q Consensus 82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~a--p~vitVga~~~~~~~~~~~~~~~~~~~~g~ 159 (557)
+|+|+ .++.+.|+-.-+-....+.|++|.|+||+||-.++..+++ -.||.||.
T Consensus 297 LSIGG---PDfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------- 351 (1033)
T KOG4266|consen 297 LSIGG---PDFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------- 351 (1033)
T ss_pred eccCC---cccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------
Confidence 99999 3567778777777788899999999999999999998876 35566653
Q ss_pred eeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC
Q 008679 160 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG 239 (557)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~ 239 (557)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCCeeeecC
Q 008679 240 NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAPG 315 (557)
Q Consensus 240 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG 315 (557)
....+.++.|||||-+.- -.|++||||++-|
T Consensus 352 ---------------------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG 386 (1033)
T KOG4266|consen 352 ---------------------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYG 386 (1033)
T ss_pred ---------------------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeec
Confidence 111378899999996532 1389999999999
Q ss_pred CcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHccccccCCCCCccc
Q 008679 316 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPIT 391 (557)
Q Consensus 316 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~ 391 (557)
.+|...... .+-..+||||.|+|.|||+++||.+ +..-++|+-+|++|+..|.+++..
T Consensus 387 ~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~----- 448 (1033)
T KOG4266|consen 387 RDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP----- 448 (1033)
T ss_pred cccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-----
Confidence 999876554 5778899999999999999999965 334579999999999999999753
Q ss_pred CCCCCCCCCCeeeccccCccCcCC
Q 008679 392 NADGSIATPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 392 ~~~~~~~~~~~~G~G~vn~~~A~~ 415 (557)
.-+.||+|++|..++.+
T Consensus 449 -------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 -------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred -------chhhccCcchhHHHHHH
Confidence 45789999999998876
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.95 E-value=5.4e-27 Score=229.76 Aligned_cols=192 Identities=33% Similarity=0.417 Sum_probs=152.4
Q ss_pred CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-HCCCcEE
Q 008679 2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVL 80 (557)
Q Consensus 2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~-~~gvdVI 80 (557)
.+||||||++|++.... ....|+||+++|+.+|+..... ......+++++++++ +.+++||
T Consensus 44 ~~HGt~va~~i~~~~~~----------~~~~g~a~~a~i~~~~~~~~~~--------~~~~~~~~~ai~~~~~~~~~~ii 105 (241)
T cd00306 44 NGHGTHVAGIIAASANN----------GGGVGVAPGAKLIPVKVLDGDG--------SGSSSDIAAAIDYAAADQGADVI 105 (241)
T ss_pred CCcHHHHHHHHhcCCCC----------CCCEEeCCCCEEEEEEEecCCC--------CcCHHHHHHHHHHHHhccCCCEE
Confidence 59999999999987321 1127999999999999987654 367888999999999 8999999
Q ss_pred EEecCCCCCCCCCcchHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCCCCCCceEEecccccCcceeeeEEeCCCcEE
Q 008679 81 SISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 156 (557)
Q Consensus 81 n~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~ 156 (557)
|||||.... .....+...+.++.++ |+++|+|+||.+.... ......+++|+||+.....
T Consensus 106 n~S~g~~~~--~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------- 169 (241)
T cd00306 106 NLSLGGPGS--PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------- 169 (241)
T ss_pred EeCCCCCCC--CCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------
Confidence 999999322 1356677778888888 9999999999997665 3555679999999853211
Q ss_pred EeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCC
Q 008679 157 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 157 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~ 236 (557)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCcc-ccccCCCCCCCCCCCcCCeeeecC
Q 008679 237 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFM-ANFTSRGPNALDPYILKPDITAPG 315 (557)
Q Consensus 237 ~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~GP~~~~~~~lKPDI~APG 315 (557)
.. ..++. ...|||+.|||
T Consensus 170 -----------------------------------------------------~~~~~~~~--------~~~~~~~~apg 188 (241)
T cd00306 170 -----------------------------------------------------TPASPSSN--------GGAGVDIAAPG 188 (241)
T ss_pred -----------------------------------------------------CccCCcCC--------CCCCceEEeCc
Confidence 11 12333 34577999999
Q ss_pred CcEEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 008679 316 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 379 (557)
Q Consensus 316 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 379 (557)
.++...... ....+..++|||||||+|||++|||+|++|++++.++|++|+.|
T Consensus 189 ~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999875111 12689999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-19 Score=195.62 Aligned_cols=223 Identities=30% Similarity=0.406 Sum_probs=161.8
Q ss_pred CCCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCC-CCCCccCCCCCCHHHHHHHHHHHHHCC--C
Q 008679 1 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT-PKASKAAGNTCFEADMLAAIDDAIRDG--V 77 (557)
Q Consensus 1 ~~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~-~~~~~~~~~~~~~~~i~~ai~~A~~~g--v 77 (557)
+++|||||++++++.... ......|++|+++++.+|++... + .....+++++++++++.+ +
T Consensus 182 ~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~g--------~~~~~~~~~~i~~~~~~~~~~ 245 (508)
T COG1404 182 DNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGGG--------SGELSDVAEGIEGAANLGGPA 245 (508)
T ss_pred CCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCCC--------cccHHHHHHHHHHHHhcCCCC
Confidence 468999999999984211 11235799999999999999866 3 367777899999999999 9
Q ss_pred cEEEEecCCCCCCCCCcchHHHHHHHHHhCC-cEEEEecCCCCCCCCC----CCCCC--CceEEecccccCcceeeeEEe
Q 008679 78 HVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGSLDRDFVGPVVL 150 (557)
Q Consensus 78 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~a--p~vitVga~~~~~~~~~~~~~ 150 (557)
++||||+|.. ........+..++..++..| +++|+++||.+..... .+... +.+++|++...
T Consensus 246 ~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------- 314 (508)
T COG1404 246 DVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------- 314 (508)
T ss_pred cEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------
Confidence 9999999984 22234455667777777777 9999999999865421 11111 24444444210
Q ss_pred CCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEE
Q 008679 151 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 230 (557)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gv 230 (557)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCe
Q 008679 231 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 310 (557)
Q Consensus 231 i~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 310 (557)
.+.++.||++|+.. +.+
T Consensus 315 ---------------------------------------------------------~~~~~~~s~~g~~~------~~~ 331 (508)
T COG1404 315 ---------------------------------------------------------SDTVASFSNDGSPT------GVD 331 (508)
T ss_pred ---------------------------------------------------------CCccccccccCCCC------Ccc
Confidence 25677899999751 239
Q ss_pred eeecCCcEEe-----cccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHccccccC
Q 008679 311 ITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSALMTTAWMKN 384 (557)
Q Consensus 311 I~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~ 384 (557)
+.|||.+|.+ .+++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..+..++.. .
T Consensus 332 ~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~ 399 (508)
T COG1404 332 IAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T 399 (508)
T ss_pred eeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c
Confidence 9999999988 444410 2499999999999999999999999999 89999999998888874 0
Q ss_pred CCCCcccCCCCCCCCCCeeeccccCccCcCC
Q 008679 385 NKALPITNADGSIATPFSFGSGHFRPTKAAD 415 (557)
Q Consensus 385 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 415 (557)
. .......++.|..+...+..
T Consensus 400 ~----------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 P----------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred c----------CCccccccccCccccccccc
Confidence 0 11234456666666555444
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=2.5e-17 Score=171.61 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=77.4
Q ss_pred eeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHC---CCcEEEEecCCCCCCC--CCcchHHHHHHHH
Q 008679 30 TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPFA--FNRDGIAIGALNA 104 (557)
Q Consensus 30 ~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~---gvdVIn~SlG~~~~~~--~~~~~~~~a~~~a 104 (557)
.+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||||||...... .....+..++.+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a 149 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQA 149 (361)
T ss_pred HHHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHH
Confidence 46899999999999997642 33477888888887 9999999999932110 1235577778889
Q ss_pred HhCCcEEEEecCCCCCCCCC-----------CCCCCCceEEecccccCc
Q 008679 105 VKHNILVACSAGNSGPAPSS-----------LSNLAPWLITVGAGSLDR 142 (557)
Q Consensus 105 ~~~Gv~vV~AAGN~G~~~~~-----------~~~~ap~vitVga~~~~~ 142 (557)
.++||.||+|+||+|..... .+...|||++||+++...
T Consensus 150 ~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 150 AAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999999999999976532 234569999999986644
No 43
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.48 E-value=2.9e-13 Score=122.30 Aligned_cols=116 Identities=28% Similarity=0.312 Sum_probs=90.1
Q ss_pred CceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCccccC-
Q 008679 167 KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYD- 245 (557)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~- 245 (557)
....++++.+. |...++...+++|||+||+|+.|.|.+|..+++++||.++|++|+..........
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 35667777543 5556666778999999999999999999999999999999999987543222111
Q ss_pred CCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCC
Q 008679 246 AHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 300 (557)
Q Consensus 246 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~ 300 (557)
...||++.|+.++|+.|++|+++ ++++....+.. ..+.+.++.||||||.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 35789999999999999999988 44444444443 4567889999999996
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.44 E-value=1.3e-12 Score=115.50 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=99.2
Q ss_pred EEeCCCcEEEeeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCc-cchhhhHHHhhcC
Q 008679 148 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 226 (557)
Q Consensus 148 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~k~~~~~~~G 226 (557)
+.|+|+.++.|++++.... ..+++++.... ........|.+..++..+++||||||+|+.| .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997654 45677763321 1234457899988888999999999999999 9999999999999
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEE
Q 008679 227 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 275 (557)
Q Consensus 227 a~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~ 275 (557)
|.|+|++++.............+|++.|+.++|+.|++|++++..++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999986544333333568999999999999999999998766554
No 45
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.09 E-value=4.2e-10 Score=98.77 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc---ccc--CCCcccEEEEehhhHHHH
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE---YSY--DAHYLPATAVLYDDAIKI 262 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~---~~~--~~~~ip~~~i~~~~g~~l 262 (557)
...|.+..+...+++|||+||+|+.|.|.+|..+++++||.++|++|+...... ... ....||.++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 367998888888999999999999999999999999999999999998653211 111 345799999999999999
Q ss_pred HHHHhcCCCceEE
Q 008679 263 HEYIKSTNNPTAI 275 (557)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (557)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988766554
No 46
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.06 E-value=7.7e-10 Score=95.48 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc--cc--cCCCcccEEEEehhhHHHHH
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKIH 263 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~--~~--~~~~~ip~~~i~~~~g~~l~ 263 (557)
...|.+.++...+++|||+|++||+|+|.+|..+|+++||.++|+||+...... .. .....||+++|+.++|+.|+
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 457999888888999999999999999999999999999999999998653111 11 13468899999999999999
Q ss_pred HHHhcC
Q 008679 264 EYIKST 269 (557)
Q Consensus 264 ~~~~~~ 269 (557)
+.+.+.
T Consensus 110 ~~l~~~ 115 (120)
T cd02129 110 QTFGDS 115 (120)
T ss_pred HHhccC
Confidence 988744
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.06 E-value=9.3e-10 Score=98.16 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=74.5
Q ss_pred CCCCcCCCCC--CCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCcc---c-cCCCcccEEEEehhhHH
Q 008679 187 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY---S-YDAHYLPATAVLYDDAI 260 (557)
Q Consensus 187 ~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~---~-~~~~~ip~~~i~~~~g~ 260 (557)
....|.+... +..++.|+|+|++||+|.|.+|..+++++||.++|+||+...+... . .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3467998876 5678999999999999999999999999999999999997622211 1 12357899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 008679 261 KIHEYIKSTNNPTAII 276 (557)
Q Consensus 261 ~l~~~~~~~~~~~~~i 276 (557)
.|++++.++.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988776653
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.04 E-value=1.3e-09 Score=94.66 Aligned_cols=88 Identities=22% Similarity=0.307 Sum_probs=72.1
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC-Cc---cc----cCCCcccEEEEehhhH
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NE---YS----YDAHYLPATAVLYDDA 259 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~-~~---~~----~~~~~ip~~~i~~~~g 259 (557)
...|.+... ..+++|||+|++||+|.|.+|..+++++||.++|+||+.... .. +. .....||+++|+.++|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 356987443 568999999999999999999999999999999999985431 11 11 1235899999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 008679 260 IKIHEYIKSTNNPTAII 276 (557)
Q Consensus 260 ~~l~~~~~~~~~~~~~i 276 (557)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999998877665
No 49
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-10 Score=114.75 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=61.5
Q ss_pred cceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcc---cCCCCC-CCCCCeeeccccCccCc
Q 008679 338 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPI---TNADGS-IATPFSFGSGHFRPTKA 413 (557)
Q Consensus 338 ~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~---~~~~~~-~~~~~~~G~G~vn~~~A 413 (557)
.....-||||.|+|-+||+-||.++++|.|+..+++.+-.-|.++.......- +...|. ..-+.-+|+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 35567899999999999999999999999999999998887776654321110 111221 33455689999998877
Q ss_pred CCCCceeeccc
Q 008679 414 ADPGLVYDASY 424 (557)
Q Consensus 414 ~~~~lv~~~~~ 424 (557)
+.....+...+
T Consensus 456 v~lak~wktvp 466 (629)
T KOG3526|consen 456 VMLAKAWKTVP 466 (629)
T ss_pred HHHHHHhccCC
Confidence 76444444433
No 50
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.98 E-value=3e-09 Score=92.81 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCccc----cCCCcccEEEEehhhHHHH
Q 008679 187 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIKI 262 (557)
Q Consensus 187 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~ip~~~i~~~~g~~l 262 (557)
....|.+.... .+++|||+||+|+.|.|.+|..+++++||.++|++|+........ .....+|++.|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 34579888763 569999999999999999999999999999999999866421111 1235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 008679 263 HEYIKSTNNPTAI 275 (557)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (557)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988765554
No 51
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.98 E-value=7.6e-09 Score=90.82 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc--c--ccCCCcccEEEEehhhHHHHHH
Q 008679 189 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--Y--SYDAHYLPATAVLYDDAIKIHE 264 (557)
Q Consensus 189 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~--~--~~~~~~ip~~~i~~~~g~~l~~ 264 (557)
..|.+.++ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. . ......||++.|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35887655 35799999999999999999999999999999999998632211 1 1124679999999999999999
Q ss_pred HHhcCCCceEE
Q 008679 265 YIKSTNNPTAI 275 (557)
Q Consensus 265 ~~~~~~~~~~~ 275 (557)
.++++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998876654
No 52
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.97 E-value=2.9e-09 Score=93.82 Aligned_cols=87 Identities=25% Similarity=0.354 Sum_probs=69.9
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCC-----C--ccc-----cCCCcccEEEEe
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-----N--EYS-----YDAHYLPATAVL 255 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~-----~--~~~-----~~~~~ip~~~i~ 255 (557)
...|.+... ..+++|||+|++||.|+|.+|..+++++||.++|++|+.... . .+. .....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 357987654 557899999999999999999999999999999999875432 0 111 124589999999
Q ss_pred hhhHHHHHHHHhcCCCceEE
Q 008679 256 YDDAIKIHEYIKSTNNPTAI 275 (557)
Q Consensus 256 ~~~g~~l~~~~~~~~~~~~~ 275 (557)
..+|+.|+++++.+...++.
T Consensus 106 ~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred HHHHHHHHHHHHhCCceEEe
Confidence 99999999999987765543
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.96 E-value=8.7e-10 Score=93.27 Aligned_cols=78 Identities=33% Similarity=0.482 Sum_probs=63.7
Q ss_pred CCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC----CCccccCCCcccEEEEehhhHHHHHH
Q 008679 189 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN----GNEYSYDAHYLPATAVLYDDAIKIHE 264 (557)
Q Consensus 189 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~----~~~~~~~~~~ip~~~i~~~~g~~l~~ 264 (557)
..|.+..+...+++||||||+||.|+|.+|..+++++||.|+|++|.... ..........||+++|+.++|+.|++
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred ccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 45777788899999999999999999999999999999999999992111 11233446899999999999999999
Q ss_pred HH
Q 008679 265 YI 266 (557)
Q Consensus 265 ~~ 266 (557)
|+
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 86
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.92 E-value=4.7e-09 Score=92.50 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=73.0
Q ss_pred CCCCcCCCC--CCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCcc-c-----cCCCcccEEEEehhh
Q 008679 187 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-S-----YDAHYLPATAVLYDD 258 (557)
Q Consensus 187 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~-~-----~~~~~ip~~~i~~~~ 258 (557)
....|.+.. +...+++||||||+|+.|.|.+|..+++++||.|+|++++....... . .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345698877 77889999999999999999999999999999999999987532111 1 134679999999999
Q ss_pred HHHHHHHHhcCCCceEE
Q 008679 259 AIKIHEYIKSTNNPTAI 275 (557)
Q Consensus 259 g~~l~~~~~~~~~~~~~ 275 (557)
|+.|++|+.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987665543
No 55
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.89 E-value=7.7e-09 Score=92.75 Aligned_cols=85 Identities=15% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCccc------cCCCcccEEEEehhhHHH
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 261 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~------~~~~~ip~~~i~~~~g~~ 261 (557)
...|.+.. .+++|||+|++||+|.|.+|..+++++||.++|+||+.+....+. .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 35798764 379999999999999999999999999999999999865322211 113589999999999999
Q ss_pred HHHHHhcCCCceEE
Q 008679 262 IHEYIKSTNNPTAI 275 (557)
Q Consensus 262 l~~~~~~~~~~~~~ 275 (557)
|++++..+...+++
T Consensus 125 L~~~l~~g~~Vtv~ 138 (139)
T cd02132 125 LNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999988765543
No 56
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.89 E-value=8.2e-09 Score=90.81 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCcCCCCCC--CC----CccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc-c----------ccCCCccc
Q 008679 188 TNQCLPGSLT--PE----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-Y----------SYDAHYLP 250 (557)
Q Consensus 188 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~-~----------~~~~~~ip 250 (557)
...|.+.... +. ...++|+|++||+|.|.+|..+|+++||.++|+||+.+.... + ......||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578876543 22 378899999999999999999999999999999998653211 1 01234799
Q ss_pred EEEEehhhHHHHHHHHhcCCCceEE
Q 008679 251 ATAVLYDDAIKIHEYIKSTNNPTAI 275 (557)
Q Consensus 251 ~~~i~~~~g~~l~~~~~~~~~~~~~ 275 (557)
+++|+.++|+.|++.+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988876654
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.87 E-value=1.2e-08 Score=89.92 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc-cccCCCcccEEEEehhhHHHHHH
Q 008679 186 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHE 264 (557)
Q Consensus 186 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~-~~~~~~~ip~~~i~~~~g~~l~~ 264 (557)
.....|.+...+..+++|||+|++||+|.|.+|..+++++||.++|+||+.+.... ...+...+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34467998766667899999999999999999999999999999999998654322 1223334566666 999999999
Q ss_pred HHhcCCCceEE
Q 008679 265 YIKSTNNPTAI 275 (557)
Q Consensus 265 ~~~~~~~~~~~ 275 (557)
.++.+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99888765554
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.86 E-value=8.8e-09 Score=91.50 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=61.7
Q ss_pred CCCCCCccceEEEEeeCCcc-----chhhhHHHhhcCceEEEEEeCCCC-CC--ccccC---CCcccEEEEehhhHHHHH
Q 008679 195 SLTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSPAN-GN--EYSYD---AHYLPATAVLYDDAIKIH 263 (557)
Q Consensus 195 ~~~~~~~~gkivl~~~g~~~-----~~~k~~~~~~~Ga~gvi~~n~~~~-~~--~~~~~---~~~ip~~~i~~~~g~~l~ 263 (557)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+... +. ....+ ..+||++.|++++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 44566899999999999999 999999999999999999999732 21 11121 468999999999999999
Q ss_pred HHHhcC
Q 008679 264 EYIKST 269 (557)
Q Consensus 264 ~~~~~~ 269 (557)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988554
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.83 E-value=1.5e-08 Score=87.70 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=65.8
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC--ccc----cCCCcccEEEEehhhHHH
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN--EYS----YDAHYLPATAVLYDDAIK 261 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~--~~~----~~~~~ip~~~i~~~~g~~ 261 (557)
...|.+. +..+++|||+|++||+|+|.+|..+++++||.++|+||+..... .+. .....||+++|+.++++.
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~ 104 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHL 104 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHH
Confidence 4679766 56889999999999999999999999999999999999865321 111 234589999999999999
Q ss_pred HHHHHhcC
Q 008679 262 IHEYIKST 269 (557)
Q Consensus 262 l~~~~~~~ 269 (557)
|+.++..+
T Consensus 105 L~~l~~~~ 112 (117)
T cd04813 105 LSSLLPKS 112 (117)
T ss_pred HHHhcccc
Confidence 99987654
No 60
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.76 E-value=3.8e-08 Score=89.67 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCcCCCCCCC---CCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC-cccc-----CCCcccEEEEehhh
Q 008679 188 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 258 (557)
Q Consensus 188 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~-~~~~-----~~~~ip~~~i~~~~ 258 (557)
...|.+....+ .++.|||+|++||+|+|.+|..+|+++||.++|++|+..... .+.. ....||+++|+.++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 35798776644 789999999999999999999999999999999999865322 1211 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 008679 259 AIKIHEYIKSTNN 271 (557)
Q Consensus 259 g~~l~~~~~~~~~ 271 (557)
|+.|+.++...+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999988765
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.73 E-value=1.3e-07 Score=81.75 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=61.4
Q ss_pred EeecCCceEEEEEEEEEcCCCCeEEEEEeeC--------CCc----------c-EEEEecceEEEcCCCcEEEEEEEEEe
Q 008679 461 AIPNLNGTVIVKRTVTNVGGSKSVYFFSAKP--------PMG----------V-SVKANPSILFFDHIGQKKSFTITVRL 521 (557)
Q Consensus 461 ~~~~~~~~~t~~~tvtn~~~~~~ty~~~v~~--------~~g----------~-~~~v~p~~~~~~~~g~~~~~~vt~~~ 521 (557)
++++.....+++++|+|.|+++.+|+++... ..| . .+...|..+++ ++|++++|+|+++.
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE-
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEe
Confidence 4555556789999999999999999998661 111 1 56667888988 68999999999999
Q ss_pred CcccccccCCCceEEEEEEEECC-c-cEEEeEEE
Q 008679 522 GSETTRQGLTKQYVFGWYRWTDG-L-HLVRSPMA 553 (557)
Q Consensus 522 ~~~~~~~~~~~~~~~G~l~~~~~-~-~~v~~P~~ 553 (557)
++.. ...++.+++|+|.+++. . ..+++||+
T Consensus 81 p~~~--~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGL--DASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGG--HHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcC--CcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 6421 22458999999999974 4 49999996
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.66 E-value=3.6e-07 Score=80.66 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=70.6
Q ss_pred ceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCc--cchhhhHHHhhcCceEEEEEeCCCCCCcc---
Q 008679 168 KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEY--- 242 (557)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~--~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~--- 242 (557)
...++++.+. +.+.++...+++|||||++++.| .+..|.++++++||.++|++|+.......
T Consensus 23 ~~~~lV~~g~-------------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 23 AKGEPVDAGY-------------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred eeEEEEEeCC-------------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 4567777543 33344556789999999999999 89999999999999999999876543211
Q ss_pred c----cCCCcccEEEEehhhHHHHHHHHhcCCC
Q 008679 243 S----YDAHYLPATAVLYDDAIKIHEYIKSTNN 271 (557)
Q Consensus 243 ~----~~~~~ip~~~i~~~~g~~l~~~~~~~~~ 271 (557)
. .....||++.|+.+||+.|.+.++.+..
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1 2246799999999999999999987553
No 63
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.08 E-value=1.3e-05 Score=71.34 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCCCccceEEEEeeCCc------cchhh-------hHHHhhcCceEEEEEeCCCC-------CCccc-cCCCcccEEEEe
Q 008679 197 TPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPAN-------GNEYS-YDAHYLPATAVL 255 (557)
Q Consensus 197 ~~~~~~gkivl~~~g~~------~~~~k-------~~~~~~~Ga~gvi~~n~~~~-------~~~~~-~~~~~ip~~~i~ 255 (557)
...+++|||||++++.| .|..| .+.++++||.++|++|.... |.... .....||++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 99888 69999999999999986422 21111 223579999999
Q ss_pred hhhHHHHHHHHhcCCCceEE
Q 008679 256 YDDAIKIHEYIKSTNNPTAI 275 (557)
Q Consensus 256 ~~~g~~l~~~~~~~~~~~~~ 275 (557)
.++++.|...++.+..+.+.
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999887655443
No 64
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.79 E-value=6.1e-05 Score=69.98 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=57.7
Q ss_pred CCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC------------------CCccc-------------c--
Q 008679 198 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN------------------GNEYS-------------Y-- 244 (557)
Q Consensus 198 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~------------------~~~~~-------------~-- 244 (557)
..+++|||+|+++|.|.+.+|.++|+++||+|+|+|++..+ |..+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 56899999999999999999999999999999999987321 00000 0
Q ss_pred -CCCcccEEEEehhhHHHHHHHHhcC
Q 008679 245 -DAHYLPATAVLYDDAIKIHEYIKST 269 (557)
Q Consensus 245 -~~~~ip~~~i~~~~g~~l~~~~~~~ 269 (557)
.-..||++-|+.++++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1246899999999999999988654
No 65
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.55 E-value=0.00031 Score=72.81 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCC------ccccCCCcccEEEEehhhHHHHHHHHhcCCC
Q 008679 198 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN------EYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 271 (557)
Q Consensus 198 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~------~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~ 271 (557)
..++++|+++..||+|.|.+|++.++++||.++++.|+..+-. ........||+++|..++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4678999999999999999999999999999999999854322 2223357999999999999999998888887
Q ss_pred ceEEEEec
Q 008679 272 PTAIIKQA 279 (557)
Q Consensus 272 ~~~~i~~~ 279 (557)
.++.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 77776544
No 66
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.31 E-value=0.00056 Score=61.10 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=50.1
Q ss_pred ceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCc------------------cchhhhHHHhhcCceE
Q 008679 168 KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVG 229 (557)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~k~~~~~~~Ga~g 229 (557)
...++++.+.. .....|...++...|++|||||+.++.| .+..|.+.++++||.|
T Consensus 20 ~~aelVfvGyG-------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYG-------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCC-------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 34667776531 1234588888889999999999999988 4678999999999999
Q ss_pred EEEEeCCC
Q 008679 230 LILGNSPA 237 (557)
Q Consensus 230 vi~~n~~~ 237 (557)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999854
No 67
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.23 E-value=0.0021 Score=58.07 Aligned_cols=77 Identities=21% Similarity=0.111 Sum_probs=53.7
Q ss_pred CCcCCCCCCCCCccceEEEEeeCC------------------ccchhhhHHHhhcCceEEEEEeCCCCCC---ccccCCC
Q 008679 189 NQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPANGN---EYSYDAH 247 (557)
Q Consensus 189 ~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~k~~~~~~~Ga~gvi~~n~~~~~~---~~~~~~~ 247 (557)
..|...++...|++|||||+.++. |.+..|..++++.||.+||+|++..... ...+...
T Consensus 34 ~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~~ 113 (151)
T cd04822 34 PELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRFG 113 (151)
T ss_pred cccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCcccccccccC
Confidence 457777778889999999998874 5678899999999999999999855321 1111111
Q ss_pred cccEEEEehhhHHHHHHH
Q 008679 248 YLPATAVLYDDAIKIHEY 265 (557)
Q Consensus 248 ~ip~~~i~~~~g~~l~~~ 265 (557)
.-..+.++....+.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 114 GTAPQRVDIAAADPWFTA 131 (151)
T ss_pred ccceEEechHHHHHHhhh
Confidence 111566666666666553
No 68
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.18 E-value=0.00097 Score=59.18 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=48.7
Q ss_pred eeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCcc------------chhhhHHHhhcCceEEEEEeCC
Q 008679 169 MHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~k~~~~~~~Ga~gvi~~n~~ 236 (557)
..++++.+.. .....|...++...|++|||||+.++.|. +..|.++|.++||.|||++++.
T Consensus 23 ~gelVfvGyG-------~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 23 EAPLVFVGYG-------LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred eEeEEEecCC-------cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4566665431 12345777788888999999999998873 6689999999999999999985
Q ss_pred C
Q 008679 237 A 237 (557)
Q Consensus 237 ~ 237 (557)
.
T Consensus 96 ~ 96 (137)
T cd04820 96 R 96 (137)
T ss_pred c
Confidence 4
No 69
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.16 E-value=0.00099 Score=64.08 Aligned_cols=47 Identities=34% Similarity=0.432 Sum_probs=40.3
Q ss_pred CcCCCCCC-----CCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCC
Q 008679 190 QCLPGSLT-----PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 190 ~c~~~~~~-----~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~ 236 (557)
.|...+++ ..+++|||||+++|.+.+..|.++|+++||+|+|+|++.
T Consensus 54 yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 54 YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 46555443 578999999999999988999999999999999999863
No 70
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0063 Score=70.34 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=54.3
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHC-CCcEEEEecCCCC--CCCC--CcchHHHHHHHHH
Q 008679 31 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD-GVHVLSISIGTNQ--PFAF--NRDGIAIGALNAV 105 (557)
Q Consensus 31 ~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~-gvdVIn~SlG~~~--~~~~--~~~~~~~a~~~a~ 105 (557)
..-+||+|+|..|-. +.. ....+..|+..-... ---+|-+||+... ..++ .-+.+......|.
T Consensus 288 s~A~AP~A~I~lvva--p~~----------~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PNP----------LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEc--CCC----------ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 356899999999866 222 111122222221111 0133445666521 1222 2233444555688
Q ss_pred hCCcEEEEecCCCCCCCCC--------CCCCCCceEEecc
Q 008679 106 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 137 (557)
Q Consensus 106 ~~Gv~vV~AAGN~G~~~~~--------~~~~ap~vitVga 137 (557)
.+|+.+++|+|.+|....+ .+..+|+|++||-
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999865543 2234699999997
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.65 E-value=0.09 Score=44.14 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=62.0
Q ss_pred CceEEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCcccccccCCCceEEEEEEEECCc
Q 008679 466 NGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGL 545 (557)
Q Consensus 466 ~~~~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~G~l~~~~~~ 545 (557)
+...+.+++|+|.+.....|++.........+++.|..-.+ ++|++.+++|+|... ...+. +.+.|...-..
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~------~~~g~-~~~~l~i~~e~ 90 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT------KPLGD-YEGSLVITTEG 90 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC------CCCce-EEEEEEEEECC
Confidence 35677888999999999999998654334566777776666 579999999999964 12333 47888877655
Q ss_pred cEEEeEEEEEe
Q 008679 546 HLVRSPMAVSF 556 (557)
Q Consensus 546 ~~v~~P~~~~~ 556 (557)
..+.+|+-++.
T Consensus 91 ~~~~i~v~a~~ 101 (102)
T PF14874_consen 91 GSFEIPVKAEV 101 (102)
T ss_pred eEEEEEEEEEE
Confidence 68888887764
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.44 E-value=0.0035 Score=56.01 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCC
Q 008679 199 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 237 (557)
Q Consensus 199 ~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~ 237 (557)
.+++|||+|++.|...+-.|+++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999999853
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.39 E-value=0.013 Score=46.80 Aligned_cols=64 Identities=30% Similarity=0.305 Sum_probs=40.0
Q ss_pred ceEEEEEEEEEcCCCC-eEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCcccccccCCCce
Q 008679 467 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 534 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~-~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~ 534 (557)
.+.+++++|+|.|... ...++++..|+|-.+...|..+.--++||+++++++++++. +...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~----~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA----DAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T----T--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC----CCCCceE
Confidence 4688999999999754 46788888999999877888776447899999999999984 4555554
No 74
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.23 E-value=0.0066 Score=53.71 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCc------ccc----CCCcccEEEEehh
Q 008679 188 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE------YSY----DAHYLPATAVLYD 257 (557)
Q Consensus 188 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~------~~~----~~~~ip~~~i~~~ 257 (557)
...|.+.. +..+..+.++|++||+|+|..|..+++++||.++|+.++.....+ +.. +.-.||+.++...
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 45676532 245678899999999999999999999999999999877443222 222 2358999999999
Q ss_pred hHHHHHHHHhcCCCceEEEE
Q 008679 258 DAIKIHEYIKSTNNPTAIIK 277 (557)
Q Consensus 258 ~g~~l~~~~~~~~~~~~~i~ 277 (557)
+|..+..-++.....-+.+.
T Consensus 153 ~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred ceEEEehhHHHhCCccEEEe
Confidence 98766655555544444433
No 75
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.027 Score=57.35 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCcCCCCC---CCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCCCCccc----cCCCcccEEEEehhhHHH
Q 008679 189 NQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 261 (557)
Q Consensus 189 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~ip~~~i~~~~g~~ 261 (557)
.+|.+..- ........++|+.||+|+|.+|+.+|+++|..++|+||+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 35665432 23456678999999999999999999999999999999865443221 234688999999999999
Q ss_pred HHHHHhcC
Q 008679 262 IHEYIKST 269 (557)
Q Consensus 262 l~~~~~~~ 269 (557)
|++|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99975444
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.50 E-value=1.2 Score=38.53 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred eEEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCc
Q 008679 468 TVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 523 (557)
Q Consensus 468 ~~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~ 523 (557)
.-.++++|.|.+..+.+|+++++.++|+.+......+++ ++||+.++.|.+.++.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 356889999999999999999998889999555578888 6799999999999985
No 77
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.11 Score=55.37 Aligned_cols=75 Identities=20% Similarity=0.112 Sum_probs=55.0
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCCCC-CCCCCeeeccccCccCcCCC
Q 008679 341 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS-IATPFSFGSGHFRPTKAADP 416 (557)
Q Consensus 341 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~-~~~~~~~G~G~vn~~~A~~~ 416 (557)
.--.|||-++|+.||+.+|.++++|.++...+..+...++........ .....+. ..-...+|+|++|...-+..
T Consensus 250 e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~-~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 250 EGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKG-KWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred ccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCC-CceEecCCceeeeeecccccCcchhhhh
Confidence 445799999999999999999999999999999999888876644322 1111111 11234689999998776653
No 78
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.55 E-value=0.12 Score=47.09 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCCCCCCccceEEEEeeCCccch-------------------hhhHHHhhcCceEEEEEeCC
Q 008679 194 GSLTPEKVKGKIVLCMRGSGFKL-------------------SKGMEVKRAGGVGLILGNSP 236 (557)
Q Consensus 194 ~~~~~~~~~gkivl~~~g~~~~~-------------------~k~~~~~~~Ga~gvi~~n~~ 236 (557)
.++...|++||||++.++...+. .|.+.+.+.||.|+|+++..
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 36668899999999997765332 38999999999999999874
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.33 E-value=4.5 Score=35.21 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCceEEEEEEEEEcCCCCeEEEEEeeC----CCcc--------------------EEEEecceEEEcCCCcEEEEEEEEE
Q 008679 465 LNGTVIVKRTVTNVGGSKSVYFFSAKP----PMGV--------------------SVKANPSILFFDHIGQKKSFTITVR 520 (557)
Q Consensus 465 ~~~~~t~~~tvtn~~~~~~ty~~~v~~----~~g~--------------------~~~v~p~~~~~~~~g~~~~~~vt~~ 520 (557)
.+...+++++|+|.++++.+|.+++.. ..|+ -++ .|..+++ +++|+++++++++
T Consensus 25 P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 25 PGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIK 102 (121)
T ss_pred CCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEE
Confidence 346789999999999999999988542 1221 011 2555777 6899999999999
Q ss_pred eCcccccccCCCceEEEEEEEE
Q 008679 521 LGSETTRQGLTKQYVFGWYRWT 542 (557)
Q Consensus 521 ~~~~~~~~~~~~~~~~G~l~~~ 542 (557)
.++ ..-.|.. -|-|.|+
T Consensus 103 ~P~----~~f~G~i-lGGi~~~ 119 (121)
T PF06030_consen 103 MPK----KAFDGII-LGGIYFS 119 (121)
T ss_pred cCC----CCcCCEE-EeeEEEE
Confidence 973 3334444 3545554
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=88.56 E-value=3.7 Score=43.42 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=56.9
Q ss_pred ceEEEEEEEEEcCCCCe-EEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCcccccccCCCceEEEEEEEE
Q 008679 467 GTVIVKRTVTNVGGSKS-VYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 542 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~-ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~G~l~~~ 542 (557)
...++...+.|.|+.+. .-++++..|.|-.+.|.|.++-.-++||++++++|+++++ ++..+.| +-+++-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~----~a~aGdY-~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPE----DAGAGDY-RITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCC----CCCCCcE-EEEEEEe
Confidence 45778888999998664 4578889999999999999876668899999999999985 6677777 4555544
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=82.83 E-value=11 Score=32.41 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=40.9
Q ss_pred eEEEEEEEEEcCCCCeEEEEEeeC---CC----ccEEEEecceEEEcCCCcEEEEEEEEEeC
Q 008679 468 TVIVKRTVTNVGGSKSVYFFSAKP---PM----GVSVKANPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 468 ~~t~~~tvtn~~~~~~ty~~~v~~---~~----g~~~~v~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
..+.+++|+|.++.+..+.+.+.. .+ .-.+.++|..+.+ ++|+++++.| +...
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~ 74 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGS 74 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECS
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecC
Confidence 356789999999988888887763 11 1256789999999 5799999999 7743
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=81.34 E-value=11 Score=40.44 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=47.2
Q ss_pred eEEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCc
Q 008679 468 TVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 523 (557)
Q Consensus 468 ~~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~ 523 (557)
...+++++.|.+.++.+|+++++..++..+...+..+++ ++||+.++.|+++.++
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 467889999999999999999998888888765457887 5799999999999974
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.44 E-value=18 Score=38.51 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEcCCCCeEEEEEee-CCCccEEEEecc-----eEEEcCCCcEEEEEEEEEeCcccccccCCCce
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFSAK-PPMGVSVKANPS-----ILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 534 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~v~-~~~g~~~~v~p~-----~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~ 534 (557)
.+..+++++.|.|..+.+|.+++. .|+|-.....-. ++.+ ++||+++|+|.+.++. .+..+.|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~----na~pG~Y 352 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL----NATPGTY 352 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC----CCCCCce
Confidence 456899999999999999999998 787766554422 3455 5799999999999973 4444555
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=76.04 E-value=18 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=40.1
Q ss_pred ceEEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeC
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
......++|+|.++....|.+....+... .|.|..-.+ ++++++++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 34677889999999999999998877654 567998777 579999999999885
No 85
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=59.67 E-value=93 Score=25.18 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCeeEeecCCceEEEEEEEEEcCCCCeEEEEEee-----CCCccEEEEecceEEEcCCCcEEEEEEEEEeC
Q 008679 457 YPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAK-----PPMGVSVKANPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 457 ~ps~~~~~~~~~~t~~~tvtn~~~~~~ty~~~v~-----~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
-+++.+.+-.+ +++++|...|+.....++.+. +..|....-...+|+|.+....++|+|.+..+
T Consensus 8 ~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD 76 (90)
T smart00237 8 QPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDD 76 (90)
T ss_pred CCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCC
Confidence 34556655433 566667666665555555543 33566666667889996433456666665554
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=59.12 E-value=99 Score=27.58 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=48.2
Q ss_pred EEEEEEEEEcCCCC-eEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCcccccccCCCceEEEEEEEEC
Q 008679 469 VIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTD 543 (557)
Q Consensus 469 ~t~~~tvtn~~~~~-~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~G~l~~~~ 543 (557)
..+.+.+-|..+.. ..-++......++++--.|..+++ .+++.++++.+++..+ ...+..||.+++..
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS------tetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS------TETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe------ccCCEEEEEEEEec
Confidence 44555677776532 233444445567888888999998 5789999999999962 34567799999863
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.32 E-value=71 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=31.7
Q ss_pred CceEEEEEEEEEcCCCC-eEEEEEeeCCCccEEEEecceE-EEcCCCcEEEEEEEEEeC
Q 008679 466 NGTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSIL-FFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 466 ~~~~t~~~tvtn~~~~~-~ty~~~v~~~~g~~~~v~p~~~-~~~~~g~~~~~~vt~~~~ 522 (557)
....+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 46788999999999753 5566665433 3232 11122 34 578999888888884
No 88
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=56.42 E-value=69 Score=25.70 Aligned_cols=53 Identities=23% Similarity=0.103 Sum_probs=27.1
Q ss_pred EEEEEEEEEcCCCCeEE--------EEEeeCCCccEEEE---------ecceEEEcCCCcEEEEEEEEEeC
Q 008679 469 VIVKRTVTNVGGSKSVY--------FFSAKPPMGVSVKA---------NPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 469 ~t~~~tvtn~~~~~~ty--------~~~v~~~~g~~~~v---------~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
..++++|+|.++.+.+. .+.+...+|-.|.- --...++ ++||+++|+.++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCC
Confidence 35678888888755433 34444444433322 1223455 579999999888775
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=55.35 E-value=74 Score=37.02 Aligned_cols=82 Identities=16% Similarity=0.045 Sum_probs=43.8
Q ss_pred eEEEEEEEEEcCCCCeEEE--EEeeCCCc-c----EEEEecceEEEcCCCcEEEEEEEEEe-CcccccccCCCceE--EE
Q 008679 468 TVIVKRTVTNVGGSKSVYF--FSAKPPMG-V----SVKANPSILFFDHIGQKKSFTITVRL-GSETTRQGLTKQYV--FG 537 (557)
Q Consensus 468 ~~t~~~tvtn~~~~~~ty~--~~v~~~~g-~----~~~v~p~~~~~~~~g~~~~~~vt~~~-~~~~~~~~~~~~~~--~G 537 (557)
..+++++|||+|+.+.... +-+..|.. . +--+--..+.+ ++||++++++++.. ..-. -....+.|. .|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls-~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLS-VANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHce-EEcCCCcEEEeCc
Confidence 4779999999997654444 34444422 1 11111223455 57999999888875 3210 011123342 35
Q ss_pred EEEEE--CCccEEEeE
Q 008679 538 WYRWT--DGLHLVRSP 551 (557)
Q Consensus 538 ~l~~~--~~~~~v~~P 551 (557)
...+. +..|.|+++
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 54433 346777764
No 90
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=53.24 E-value=1.2e+02 Score=35.62 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCCCeeEeecCCceEEEEEEEEEcC-CCCeEEEEEee-----CCCccEEEEecceEEEcCCCcE-EEEEEEEEeCc
Q 008679 454 NLNYPSIAIPNLNGTVIVKRTVTNVG-GSKSVYFFSAK-----PPMGVSVKANPSILFFDHIGQK-KSFTITVRLGS 523 (557)
Q Consensus 454 ~ln~ps~~~~~~~~~~t~~~tvtn~~-~~~~ty~~~v~-----~~~g~~~~v~p~~~~~~~~g~~-~~~~vt~~~~~ 523 (557)
.+..+++.+.+-. -+++++|+-.| +...+-++.+. +..|.+..-...+|+|. +||+ ++++|.+..++
T Consensus 403 ~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~-PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 403 FFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFK-PGETQKEFRIGIIDDD 476 (928)
T ss_pred EecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEEC-CCceEEEEEEEEccCC
Confidence 3444555555433 45666666655 33444444443 33567777777899996 5664 66777666553
No 91
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=52.73 E-value=63 Score=22.50 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=24.1
Q ss_pred EEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEE
Q 008679 473 RTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 519 (557)
Q Consensus 473 ~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~ 519 (557)
.+++|.|+....-+ .+...=|=. .+..+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt-~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCT-TAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCE-EeeCCcceE-CCCCEEEEEEEC
Confidence 57899997664432 222222221 222222234 579999888874
No 92
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.90 E-value=1.3e+02 Score=28.20 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=36.4
Q ss_pred ceEEEEEEEEEcCCCCeEEEEEeeC----CCccEEEEecce--EEEcCCCcEEEEEEEEEeC
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFSAKP----PMGVSVKANPSI--LFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~v~~----~~g~~~~v~p~~--~~~~~~g~~~~~~vt~~~~ 522 (557)
...+++.+|.|.|+ ..-|.+++.. ++.+.+.---.+ +.--++|+..+..+++++.
T Consensus 38 ~~v~V~~~iyN~G~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS-SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred cEEEEEEEEEECCC-CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 46889999999997 4677888764 244443211111 2222679999998888885
No 93
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=48.48 E-value=1.3e+02 Score=24.51 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCCCeeEeecCCceEEEEEEEEEcCC--CCeEEEEEee---CCCccEEEEecceEEEcCCCcEEEEEEEEEeC
Q 008679 455 LNYPSIAIPNLNGTVIVKRTVTNVGG--SKSVYFFSAK---PPMGVSVKANPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 455 ln~ps~~~~~~~~~~t~~~tvtn~~~--~~~ty~~~v~---~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
+.-+++.+.+-.+...+.+++++ +. ...+..+... +-.|......+..++|.+...++++.|++-.+
T Consensus 15 f~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD 86 (100)
T PF03160_consen 15 FSSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDD 86 (100)
T ss_dssp ESSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---
T ss_pred EeCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCC
Confidence 44456666654455555555444 42 3333333322 23567777788899997655567777776554
No 94
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.75 E-value=20 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHccc
Q 008679 357 AALLKAIHPDWSSAAIRSALMTTA 380 (557)
Q Consensus 357 aALl~q~~p~~s~~~ik~~L~~TA 380 (557)
+--|++.||+|+++.|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999996553
No 95
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=45.59 E-value=1.5e+02 Score=24.74 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=36.9
Q ss_pred CCceEEEEEEEEEcCCCC-eEEEEE-----eeCCCccE---EEEecceEEEcCCCcEEEEEEEEEeCc
Q 008679 465 LNGTVIVKRTVTNVGGSK-SVYFFS-----AKPPMGVS---VKANPSILFFDHIGQKKSFTITVRLGS 523 (557)
Q Consensus 465 ~~~~~t~~~tvtn~~~~~-~ty~~~-----v~~~~g~~---~~v~p~~~~~~~~g~~~~~~vt~~~~~ 523 (557)
.+...++.++++|..+.. .+-++. ++-+ |+. ....-..+++ +++|+.++++++....
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 346789999999999877 553333 3333 663 4555566677 5799999999998863
No 96
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=44.44 E-value=62 Score=37.55 Aligned_cols=67 Identities=18% Similarity=0.400 Sum_probs=40.9
Q ss_pred CCCCCCeeEeecC---------CceEEEEEEEEEcCCCC--eEEEEEeeCCCccEEEEecc-------eEEEcCCCcEEE
Q 008679 453 LNLNYPSIAIPNL---------NGTVIVKRTVTNVGGSK--SVYFFSAKPPMGVSVKANPS-------ILFFDHIGQKKS 514 (557)
Q Consensus 453 ~~ln~ps~~~~~~---------~~~~t~~~tvtn~~~~~--~ty~~~v~~~~g~~~~v~p~-------~~~~~~~g~~~~ 514 (557)
+-|.|..|...++ .+..+++++|||+|+.+ .+-.+-+..|.+. +. .|. .+.+ ++||+++
T Consensus 644 ~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~ 720 (765)
T PRK15098 644 YGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQT 720 (765)
T ss_pred CCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEE
Confidence 3455566554433 24578999999999754 3444445554331 11 232 3445 6899999
Q ss_pred EEEEEEeC
Q 008679 515 FTITVRLG 522 (557)
Q Consensus 515 ~~vt~~~~ 522 (557)
+++++...
T Consensus 721 V~~~l~~~ 728 (765)
T PRK15098 721 VSFPIDIE 728 (765)
T ss_pred EEEeecHH
Confidence 98888775
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=44.03 E-value=11 Score=16.44 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=4.5
Q ss_pred cccCCC
Q 008679 293 NFTSRG 298 (557)
Q Consensus 293 ~fSS~G 298 (557)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 98
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=42.77 E-value=37 Score=34.38 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=52.3
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccC-CC-----CC--CHHHHHHHHHHHHHCCCcEEEEecCCCC---C--------CC
Q 008679 31 ASGGAPLARLAIYKACWATPKASKAA-GN-----TC--FEADMLAAIDDAIRDGVHVLSISIGTNQ---P--------FA 91 (557)
Q Consensus 31 ~~GvAP~A~L~~~kv~~~~~~~~~~~-~~-----~~--~~~~i~~ai~~A~~~gvdVIn~SlG~~~---~--------~~ 91 (557)
++-+||-++|-+-..+|........- |. .| ..+.-+.-++++++.|.+||+ |.|... + +.
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 56789999998877777643100000 00 00 111123447899999999995 667632 1 12
Q ss_pred CCcchHHHHHHH-HHh----CCcEEEEecCCCCC
Q 008679 92 FNRDGIAIGALN-AVK----HNILVACSAGNSGP 120 (557)
Q Consensus 92 ~~~~~~~~a~~~-a~~----~Gv~vV~AAGN~G~ 120 (557)
...||+++.+.+ .++ -||.||+| ++-|
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS--~Ekp 247 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFS--LEKP 247 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEe--cCCC
Confidence 446889888875 443 47899998 4544
No 99
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=42.72 E-value=75 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEecceEEEcCCCcEEEEEEEEEeC
Q 008679 496 SVKANPSILFFDHIGQKKSFTITVRLG 522 (557)
Q Consensus 496 ~~~v~p~~~~~~~~g~~~~~~vt~~~~ 522 (557)
.+.+.|..+++. .|++..|++++...
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~ 29 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPS 29 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECC
Confidence 567889998884 79999999997654
No 100
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=40.90 E-value=1.8e+02 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.2
Q ss_pred eEEEcCCCcEEEEEEEEEeCc
Q 008679 503 ILFFDHIGQKKSFTITVRLGS 523 (557)
Q Consensus 503 ~~~~~~~g~~~~~~vt~~~~~ 523 (557)
+++.+.+|+.+.|.|.+.+.+
T Consensus 74 sVTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEEcCCCceEEEEEEeecCC
Confidence 477777899999999998864
No 101
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.64 E-value=2.2e+02 Score=24.15 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=44.9
Q ss_pred eeec-CCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCCCcch-HHHHHHHHHhC-C
Q 008679 32 SGGA-PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDG-IAIGALNAVKH-N 108 (557)
Q Consensus 32 ~GvA-P~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~-~~~a~~~a~~~-G 108 (557)
.+.. ++++|+.+-- +.+ |....++.-+++..+.|+|+|-+|--.....+...=| ++.......++ |
T Consensus 31 ~~y~~~~~elvgf~~--CgG---------Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 31 ARYDDEDVELVGFFT--CGG---------CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred ccCCCCCeEEEEEee--CCC---------CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 4444 5688887644 433 9999999999999999999999987763322110111 22223334444 8
Q ss_pred cEEEE
Q 008679 109 ILVAC 113 (557)
Q Consensus 109 v~vV~ 113 (557)
+-||.
T Consensus 100 i~VV~ 104 (107)
T PF08821_consen 100 IEVVE 104 (107)
T ss_pred CCEee
Confidence 87775
No 102
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.44 E-value=1.4e+02 Score=30.38 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=50.2
Q ss_pred cCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCC----CcEEEEecCCCCCCC---CCcchHHHHHHHHHhC
Q 008679 35 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG----VHVLSISIGTNQPFA---FNRDGIAIGALNAVKH 107 (557)
Q Consensus 35 AP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~g----vdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~~ 107 (557)
.|..+|..|-+.--+. .....|++||+.+-+.+ +|||-+-=||++-.+ +-+..+. ....+.
T Consensus 39 ~~~~~~~~~p~~vQG~---------~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~ 106 (319)
T PF02601_consen 39 NPIVEIILYPASVQGE---------GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAAS 106 (319)
T ss_pred CCCcEEEEEecccccc---------chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhC
Confidence 4667777776543322 56778999999998765 999999999953221 2222333 334466
Q ss_pred CcEEEEecCCCCC
Q 008679 108 NILVACSAGNSGP 120 (557)
Q Consensus 108 Gv~vV~AAGN~G~ 120 (557)
-+.|+.+-|-+-+
T Consensus 107 ~~PvisaIGHe~D 119 (319)
T PF02601_consen 107 PIPVISAIGHETD 119 (319)
T ss_pred CCCEEEecCCCCC
Confidence 7999999998853
No 103
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=32.35 E-value=40 Score=30.08 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=28.0
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 008679 341 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 374 (557)
Q Consensus 341 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 374 (557)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3455666 48999999999999999999999875
No 104
>PRK15019 CsdA-binding activator; Provisional
Probab=32.18 E-value=45 Score=30.07 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.7
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 008679 341 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 374 (557)
Q Consensus 341 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 374 (557)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 58999999999999999999999876
No 105
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=30.12 E-value=45 Score=24.55 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=23.2
Q ss_pred cceeeeccccchhhhHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 008679 338 VKYTIFSGTSMSCPHVAAAA------ALLKAIHPDWSSAAIRSALM 377 (557)
Q Consensus 338 ~~y~~~sGTSMAaP~VAG~a------ALl~q~~p~~s~~~ik~~L~ 377 (557)
++--.+.||=+..=.+.... .-|.+.||+++.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34456667766655554442 23456699999999999884
No 106
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=29.05 E-value=2.9e+02 Score=27.96 Aligned_cols=20 Identities=15% Similarity=-0.086 Sum_probs=11.5
Q ss_pred EEEEEEEEEcCCCCeEEEEE
Q 008679 469 VIVKRTVTNVGGSKSVYFFS 488 (557)
Q Consensus 469 ~t~~~tvtn~~~~~~ty~~~ 488 (557)
..++++|+|..+.+.+-.+.
T Consensus 244 ~~~~itv~N~~~~~v~v~v~ 263 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVE 263 (317)
T ss_pred EEEEEEEECCCCCCEEEEEE
Confidence 45566677777655544433
No 107
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=28.98 E-value=80 Score=21.60 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHccc
Q 008679 356 AAALLKAIHPDWSSAAIRSALMTTA 380 (557)
Q Consensus 356 ~aALl~q~~p~~s~~~ik~~L~~TA 380 (557)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 108
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=28.89 E-value=49 Score=29.51 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.8
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 008679 341 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 374 (557)
Q Consensus 341 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 374 (557)
..+.|-| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 58999999999999999999999875
No 109
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.54 E-value=1.6e+02 Score=22.68 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=20.4
Q ss_pred CceEEEEEEEEEcCCCCeEEEEEee--CCCccEE
Q 008679 466 NGTVIVKRTVTNVGGSKSVYFFSAK--PPMGVSV 497 (557)
Q Consensus 466 ~~~~t~~~tvtn~~~~~~ty~~~v~--~~~g~~~ 497 (557)
++..+++++|+|.|+... ..+.+. .|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a-~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPA-TNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCee-EeEEEEEcCCCCCEE
Confidence 467889999999997553 334443 4555543
No 110
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.05 E-value=2.3e+02 Score=20.41 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCceEEEEEEEEEcCCCCeEEEEEee--CCCccEEEEecceEEE
Q 008679 465 LNGTVIVKRTVTNVGGSKSVYFFSAK--PPMGVSVKANPSILFF 506 (557)
Q Consensus 465 ~~~~~t~~~tvtn~~~~~~ty~~~v~--~~~g~~~~v~p~~~~~ 506 (557)
..+..+++++++|.|....+ .+.+. -|.|+.+ .|.++++
T Consensus 10 ~Gd~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 10 IGDTITYTITVTNNGNVPAT-NVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCCEEEEEEEEEECCCCceE-eEEEEEcCCCCCEE--EeCcEEE
Confidence 34678999999999986544 34443 4666554 3555443
No 111
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.14 E-value=71 Score=27.89 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=26.6
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHHH
Q 008679 342 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 375 (557)
Q Consensus 342 ~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~ 375 (557)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4555555 67999999999999999999998763
No 112
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.62 E-value=2.1e+02 Score=23.94 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred ceEEEEEEEEEcCCCCeEEEEE---ee----------CCCccEEEEecc--eEEEcCCCcEEEEEEE
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFS---AK----------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 518 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~---v~----------~~~g~~~~v~p~--~~~~~~~g~~~~~~vt 518 (557)
+..+++++|+|.|+.+...-.. .+ ..-|..+.+ |+ .+.| ++|++++++|.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 4567889999999876432211 01 112444433 32 3556 56888887764
No 113
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.39 E-value=2.2e+02 Score=23.91 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=29.0
Q ss_pred ceEEEEEEEEEcCCCCeEEEEE---ee----------CCCccEEEEecc--eEEEcCCCcEEEEEEE
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFS---AK----------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 518 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~---v~----------~~~g~~~~v~p~--~~~~~~~g~~~~~~vt 518 (557)
+..+++++|+|.|+.+...-.. .+ ..-|..+.+ |+ .+.| ++|++++++|.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4567889999999976432211 01 112333333 32 3556 56888887764
No 114
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.33 E-value=1.9e+02 Score=31.04 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=53.5
Q ss_pred cCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCC-CcEEEEecCCCCCC---CCCcchHHHHHHHHHhCCcE
Q 008679 35 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG-VHVLSISIGTNQPF---AFNRDGIAIGALNAVKHNIL 110 (557)
Q Consensus 35 AP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~g-vdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~Gv~ 110 (557)
.|.++++.|-+.--+. .....|++||+.|-+.+ +|||=+-=|+++-. .+-++.+.+| ..+.-+.
T Consensus 160 ~P~~~viv~pt~VQG~---------~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRA---i~~s~iP 227 (440)
T COG1570 160 FPSVEVIVYPTLVQGE---------GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARA---IAASRIP 227 (440)
T ss_pred CCCCeEEEEeccccCC---------CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHH---HHhCCCC
Confidence 5889999887754432 56778999999999887 99999988884321 2334444444 4467799
Q ss_pred EEEecCCCCC
Q 008679 111 VACSAGNSGP 120 (557)
Q Consensus 111 vV~AAGN~G~ 120 (557)
||.|-|-+-+
T Consensus 228 vISAVGHEtD 237 (440)
T COG1570 228 VISAVGHETD 237 (440)
T ss_pred eEeecccCCC
Confidence 9999998853
No 115
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.80 E-value=3.7e+02 Score=21.54 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=30.4
Q ss_pred EEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEE
Q 008679 469 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 519 (557)
Q Consensus 469 ~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~ 519 (557)
..+.++++|.|....++++.--.- ..-.|.++++ ++|++++..+.+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEee
Confidence 478899999998887777764211 1113566666 468887776655
No 116
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.69 E-value=61 Score=21.16 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.8
Q ss_pred chhhhHHHHHHH
Q 008679 348 MSCPHVAAAAAL 359 (557)
Q Consensus 348 MAaP~VAG~aAL 359 (557)
.|+|.+||+++=
T Consensus 14 LAAP~iagIi~s 25 (35)
T PF13940_consen 14 LAAPIIAGIIAS 25 (35)
T ss_pred hHhHHHHHHHHH
Confidence 589999999653
No 117
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=24.67 E-value=3.2e+02 Score=26.72 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred eEEEEEEEEEcCCCCeEEEEEee---CC---C----------ccEEEEecceEEEcCCCcEEEEEEEEEe
Q 008679 468 TVIVKRTVTNVGGSKSVYFFSAK---PP---M----------GVSVKANPSILFFDHIGQKKSFTITVRL 521 (557)
Q Consensus 468 ~~t~~~tvtn~~~~~~ty~~~v~---~~---~----------g~~~~v~p~~~~~~~~g~~~~~~vt~~~ 521 (557)
.....++|.|.|++...+++.+. .| . .-.+-++|..+.+ ++|+++.|.|....
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 34567889999998888877653 22 1 1256778999998 56777777765444
No 118
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=73 Score=28.52 Aligned_cols=32 Identities=28% Similarity=0.184 Sum_probs=25.7
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 008679 342 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 374 (557)
Q Consensus 342 ~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 374 (557)
.+.|=|= ++.|.|.+|++++.+-..+|++|.+
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3344443 6899999999999999999999864
No 119
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=22.75 E-value=2.6e+02 Score=23.36 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred ceEEEEEEEEEcCCCCeEEEEE---ee----------CCCccEEEEecc--eEEEcCCCcEEEEEEE
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFS---AK----------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 518 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~---v~----------~~~g~~~~v~p~--~~~~~~~g~~~~~~vt 518 (557)
+..+.+++|+|.|+.+...-.. .+ ..-|..+.+ |+ .+.| ++|++++++|.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4567889999999876432211 01 112333333 32 3556 57888887764
No 120
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.14 E-value=2.8e+02 Score=23.28 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=27.8
Q ss_pred EEEEEEEEEcCCCCeEE----EEEee---------CCCccEEEEecc--eEEEcCCCcEEEEEEE
Q 008679 469 VIVKRTVTNVGGSKSVY----FFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 518 (557)
Q Consensus 469 ~t~~~tvtn~~~~~~ty----~~~v~---------~~~g~~~~v~p~--~~~~~~~g~~~~~~vt 518 (557)
.+++++|+|.|+.+... .+--. ..-|..+.+ |+ .+.| ++|++++++|.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEEE
Confidence 67899999999976432 22100 112333333 22 3556 56888887764
No 121
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.44 E-value=3.2e+02 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred ceEEEEEEEEEcCCCCeEEE----EEee--C----------CC----ccEEEEecceEEEcCCCcEEEEEEEEEe
Q 008679 467 GTVIVKRTVTNVGGSKSVYF----FSAK--P----------PM----GVSVKANPSILFFDHIGQKKSFTITVRL 521 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~----~~v~--~----------~~----g~~~~v~p~~~~~~~~g~~~~~~vt~~~ 521 (557)
.+.+++++|||.|+++..-. +.+. . |+ .-.++|+|+.- + .+||+++++|+++.
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEeeh
Confidence 57889999999998754321 1111 1 11 00234455532 1 57999999998765
No 122
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.02 E-value=3.5e+02 Score=26.25 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=35.0
Q ss_pred ceEEEEEEEEEcCCCCeEEEEEeeCC---CccEEEEecceEEEcCCCcEEEEEEEEE
Q 008679 467 GTVIVKRTVTNVGGSKSVYFFSAKPP---MGVSVKANPSILFFDHIGQKKSFTITVR 520 (557)
Q Consensus 467 ~~~t~~~tvtn~~~~~~ty~~~v~~~---~g~~~~v~p~~~~~~~~g~~~~~~vt~~ 520 (557)
+....+++|+|.++.+......++.. ....+-|+|..+.+ ++|+++.+.|...
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~ 93 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILK 93 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEEC
Confidence 44667888999997543323334322 12357789999998 5788888877654
Done!