BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008680
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 4
Length = 94
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 61/80 (76%)
Query: 166 SSHTAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEF 225
SS CQV C D+ +K YH+RHKVCE H+KA+ V ++ + QRFCQQCSRFH L EF
Sbjct: 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEF 64
Query: 226 DDGKRSCRKRLAGHNERRRK 245
D+ KRSCR+RLAGHNERRRK
Sbjct: 65 DEAKRSCRRRLAGHNERRRK 84
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 12 Lacking The Second
Zinc- Binding Site
Length = 60
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 41/55 (74%)
Query: 172 CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFD 226
CQV C DLS KDYH+RHKVCE HSKA +V I QRFCQQCSRFH L+EFD
Sbjct: 6 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
Promoter Binding Protein-like 7
Length = 88
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 169 TAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDG 228
A CQV C D+S K YHKRH+VC + A+ V+++ +R+CQQC +FH L +FD+G
Sbjct: 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 62
Query: 229 KRSCRKRLAGHNERRRKPQV 248
KRSCR++L HN RR++ V
Sbjct: 63 KRSCRRKLERHNNRRKRKPV 82
>pdb|3E19|A Chain A, Crystal Structure Of Iron Uptake Regulatory Protein (Feoa)
Solved By Sulfur Sad In A Monoclinic Space Group
pdb|3E19|B Chain B, Crystal Structure Of Iron Uptake Regulatory Protein (Feoa)
Solved By Sulfur Sad In A Monoclinic Space Group
pdb|3E19|C Chain C, Crystal Structure Of Iron Uptake Regulatory Protein (Feoa)
Solved By Sulfur Sad In A Monoclinic Space Group
pdb|3E19|D Chain D, Crystal Structure Of Iron Uptake Regulatory Protein (Feoa)
Solved By Sulfur Sad In A Monoclinic Space Group
Length = 77
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 236 LAGHNERRRKPQVGVHPGRTAKLLRSH 262
L GHN R++ +G+ PG T ++L SH
Sbjct: 22 LGGHNARQKLVSMGLTPGATIQVLESH 48
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 333 PQYDFQKVVPPFHGNEVNAATESIFSATSARYPQDLGGPKSVSSPLFRDISLGS----EE 388
P++ F P GN NAA + S T LG +++SSPL+R I LGS +E
Sbjct: 303 PEFAF-----PLFGNAGNAAPPVLVSLTG------LGIFRTLSSPLYRRIILGSGPNNQE 351
Query: 389 FSIFD 393
+ D
Sbjct: 352 LFVLD 356
>pdb|3PTK|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
pdb|3PTK|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
pdb|3PTM|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With 2- Fluoroglucopyranoside
pdb|3PTM|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With 2- Fluoroglucopyranoside
pdb|3PTQ|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With Dinitrophenyl
2-Deoxy-2-Fluoro-Beta-D-Glucopyranoside
pdb|3PTQ|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With Dinitrophenyl
2-Deoxy-2-Fluoro-Beta-D-Glucopyranoside
Length = 505
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 2 EPWSYGSEG--KGAVANDRISPADSSSRSKGYLMGWELNTSCHNMLVSHRE 50
EPW++ S G G A R SP + + S G G E T+CH+ L++H E
Sbjct: 198 EPWTFCSNGYATGLFAPGRCSPWEKGNCSVG-DSGREPYTACHHQLLAHAE 247
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 202 KVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQVGVHPGRTAKLLRS 261
K++V + + RF + + H + +D KR + L+ NE KPQV P + K R
Sbjct: 257 KLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTAKPQVLAQPSTSRKRPRE 316
Query: 262 HEA 264
EA
Sbjct: 317 GEA 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,461,782
Number of Sequences: 62578
Number of extensions: 588773
Number of successful extensions: 1080
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 8
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)