Query 008680
Match_columns 557
No_of_seqs 177 out of 320
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.2E-40 4.1E-45 286.1 1.0 87 166-252 5-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.7E-39 5.7E-44 276.3 -0.3 82 169-250 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.5E-30 5.2E-35 207.9 2.6 59 168-226 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 19.1 28 0.00095 33.9 0.5 36 184-220 100-135 (269)
5 2d8r_A THAP domain-containing 18.1 47 0.0016 27.6 1.6 13 169-181 9-21 (99)
6 2lau_A THAP domain-containing 15.5 64 0.0022 25.5 1.7 11 169-179 4-14 (81)
7 4a6q_A Histone deacetylase com 11.2 49 0.0017 30.5 -0.2 28 188-226 20-47 (143)
8 3dzy_D Peroxisome proliferator 10.2 57 0.002 33.5 -0.1 23 169-191 50-80 (419)
9 1gh9_A 8.3 kDa protein (gene M 9.8 1.1E+02 0.0038 25.0 1.4 27 193-222 6-32 (71)
10 2dt7_A Splicing factor 3A subu 8.9 47 0.0016 24.3 -1.0 11 181-191 19-29 (38)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.2e-40 Score=286.13 Aligned_cols=87 Identities=60% Similarity=1.027 Sum_probs=80.3
Q ss_pred CCCCCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCceehhhhhhccccccCccccccchHHHHHhhHhhhhcC
Q 008680 166 SSHTAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRK 245 (557)
Q Consensus 166 ~~~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rL~~Hn~RRRk 245 (557)
.++.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus 5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk 84 (94)
T 1ul4_A 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84 (94)
T ss_dssp ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008680 246 PQVGVHP 252 (557)
Q Consensus 246 ~q~~~~~ 252 (557)
++++..+
T Consensus 85 ~~~~~~~ 91 (94)
T 1ul4_A 85 SSGESGP 91 (94)
T ss_dssp CCCC---
T ss_pred CCCCcCC
Confidence 9998754
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.7e-39 Score=276.27 Aligned_cols=82 Identities=48% Similarity=0.951 Sum_probs=78.8
Q ss_pred CCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCceehhhhhhccccccCccccccchHHHHHhhHhhhhcCCCC
Q 008680 169 TAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQV 248 (557)
Q Consensus 169 ~~~CQVdGC~~dLs~~k~Y~rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rL~~Hn~RRRk~q~ 248 (557)
.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++.
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 008680 249 GV 250 (557)
Q Consensus 249 ~~ 250 (557)
+.
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=1.5e-30 Score=207.94 Aligned_cols=59 Identities=64% Similarity=1.123 Sum_probs=57.1
Q ss_pred CCCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCceehhhhhhccccccCccc
Q 008680 168 HTAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFD 226 (557)
Q Consensus 168 ~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD 226 (557)
+.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46789999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=19.11 E-value=28 Score=33.87 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=27.8
Q ss_pred ChhhhccccchhhhcCCCeEEECCceehhhhhhcccc
Q 008680 184 SKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFH 220 (557)
Q Consensus 184 ~k~Y~rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 220 (557)
+..++++++-|..+- ++.+..++...+.|..|+..|
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 346888999998865 455667888899999998754
No 5
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=18.10 E-value=47 Score=27.62 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.4
Q ss_pred CCCcccCCCchhc
Q 008680 169 TAYCQVYGCNKDL 181 (557)
Q Consensus 169 ~~~CQVdGC~~dL 181 (557)
+..|-|.||...-
T Consensus 9 ~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 9 PTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCSSSCCCSC
T ss_pred CCeeEeCCCCCCC
Confidence 4469999998643
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=15.52 E-value=64 Score=25.54 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=7.2
Q ss_pred CCCcccCCCch
Q 008680 169 TAYCQVYGCNK 179 (557)
Q Consensus 169 ~~~CQVdGC~~ 179 (557)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34577888854
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=11.18 E-value=49 Score=30.52 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=23.1
Q ss_pred hccccchhhhcCCCeEEECCceehhhhhhccccccCccc
Q 008680 188 HKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFD 226 (557)
Q Consensus 188 ~rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD 226 (557)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458899998765 4887768999999997
No 8
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=10.23 E-value=57 Score=33.47 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=12.9
Q ss_pred CCCcccCCCch--------hccCChhhhccc
Q 008680 169 TAYCQVYGCNK--------DLSSSKDYHKRH 191 (557)
Q Consensus 169 ~~~CQVdGC~~--------dLs~~k~Y~rRh 191 (557)
...|.|.|=.+ .+.++|.||||.
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~ 80 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRT 80 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHH
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccc
Confidence 44588854221 133467788874
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=9.78 E-value=1.1e+02 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred chhhhcCCCeEEECCceehhhhhhcccccc
Q 008680 193 VCEAHSKAAKVIVNEIEQRFCQQCSRFHFL 222 (557)
Q Consensus 193 VCe~HsKAp~V~v~G~~qRFCQQCsRFH~L 222 (557)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 476 55667888899999998 9985544
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.86 E-value=47 Score=24.28 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=6.3
Q ss_pred ccCChhhhccc
Q 008680 181 LSSSKDYHKRH 191 (557)
Q Consensus 181 Ls~~k~Y~rRh 191 (557)
|...|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 44456666665
Done!