Query 008681
Match_columns 557
No_of_seqs 433 out of 1616
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 99.8 5.1E-20 1.1E-24 191.0 10.7 216 160-402 23-318 (320)
2 cd01533 4RHOD_Repeat_2 Member 99.8 8.7E-20 1.9E-24 159.6 10.0 99 270-396 10-109 (109)
3 PRK11493 sseA 3-mercaptopyruva 99.8 5.6E-20 1.2E-24 186.9 9.4 215 160-402 6-280 (281)
4 COG2897 SseA Rhodanese-related 99.8 1E-19 2.2E-24 186.4 10.2 215 159-402 11-283 (285)
5 cd01518 RHOD_YceA Member of th 99.8 4E-19 8.6E-24 153.2 9.2 98 271-393 3-100 (101)
6 PRK09629 bifunctional thiosulf 99.8 5.5E-19 1.2E-23 197.5 10.8 217 160-403 10-273 (610)
7 cd01527 RHOD_YgaP Member of th 99.8 1E-18 2.3E-23 149.6 9.8 97 271-399 3-99 (99)
8 PLN02160 thiosulfate sulfurtra 99.8 1.2E-18 2.5E-23 160.3 10.8 114 270-403 15-130 (136)
9 cd01534 4RHOD_Repeat_3 Member 99.8 9.1E-19 2E-23 149.6 9.1 94 272-394 1-95 (95)
10 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.3E-18 2.9E-23 154.3 9.8 110 272-396 2-122 (122)
11 cd01523 RHOD_Lact_B Member of 99.8 1.7E-18 3.7E-23 148.8 9.6 99 272-393 1-99 (100)
12 cd01519 RHOD_HSP67B2 Member of 99.8 9.1E-19 2E-23 151.0 7.9 105 273-394 2-106 (106)
13 PRK00162 glpE thiosulfate sulf 99.8 1.8E-18 3.8E-23 151.1 9.4 101 270-401 5-105 (108)
14 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.6E-18 3.4E-23 152.5 8.1 107 272-394 1-118 (118)
15 cd01521 RHOD_PspE2 Member of t 99.7 6.3E-18 1.4E-22 148.5 10.2 101 269-399 7-110 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 5.8E-18 1.2E-22 151.5 8.8 111 269-399 7-118 (122)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.1E-17 2.4E-22 158.4 10.7 110 270-399 36-162 (162)
18 cd01525 RHOD_Kc Member of the 99.7 1.3E-17 2.7E-22 143.9 9.5 101 272-393 1-104 (105)
19 cd01528 RHOD_2 Member of the R 99.7 1.8E-17 3.9E-22 142.9 9.9 97 271-394 1-98 (101)
20 smart00450 RHOD Rhodanese Homo 99.7 1.5E-17 3.2E-22 138.3 8.3 99 284-398 2-100 (100)
21 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.7E-17 3.6E-22 140.5 8.7 93 271-393 1-95 (96)
22 PRK11493 sseA 3-mercaptopyruva 99.7 1.5E-17 3.3E-22 169.1 10.1 119 271-404 6-138 (281)
23 PF00581 Rhodanese: Rhodanese- 99.7 2.2E-17 4.8E-22 141.7 9.6 108 273-395 1-113 (113)
24 cd01520 RHOD_YbbB Member of th 99.7 2.9E-17 6.3E-22 148.5 10.8 106 272-394 1-126 (128)
25 KOG1530 Rhodanese-related sulf 99.7 2.2E-17 4.7E-22 150.7 9.1 117 266-400 19-135 (136)
26 cd01447 Polysulfide_ST Polysul 99.7 2.8E-17 6E-22 140.6 8.5 102 272-396 1-103 (103)
27 PLN02723 3-mercaptopyruvate su 99.7 2.7E-17 5.9E-22 170.7 10.1 118 271-403 23-153 (320)
28 cd01445 TST_Repeats Thiosulfat 99.7 3.7E-17 7.9E-22 150.8 9.2 108 272-393 1-137 (138)
29 cd01535 4RHOD_Repeat_4 Member 99.7 5.3E-17 1.2E-21 151.0 9.1 98 277-404 2-99 (145)
30 PRK07411 hypothetical protein; 99.7 4.4E-17 9.4E-22 173.6 9.4 182 189-399 176-386 (390)
31 cd01524 RHOD_Pyr_redox Member 99.7 8.2E-17 1.8E-21 136.3 8.6 89 272-393 1-89 (90)
32 PRK07878 molybdopterin biosynt 99.7 4.6E-17 1E-21 173.4 8.6 177 188-398 183-387 (392)
33 cd01522 RHOD_1 Member of the R 99.7 6.8E-17 1.5E-21 144.1 7.9 103 272-394 1-104 (117)
34 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.2E-16 2.7E-21 143.8 9.4 99 271-393 3-120 (121)
35 PRK09629 bifunctional thiosulf 99.7 1.1E-16 2.4E-21 179.1 10.6 120 270-404 9-132 (610)
36 cd01529 4RHOD_Repeats Member o 99.7 1.3E-16 2.8E-21 136.3 8.5 87 284-394 10-96 (96)
37 PRK08762 molybdopterin biosynt 99.7 1.7E-16 3.7E-21 168.0 11.0 110 270-409 3-112 (376)
38 COG0607 PspE Rhodanese-related 99.7 2E-16 4.4E-21 136.2 8.8 98 277-402 11-109 (110)
39 cd01532 4RHOD_Repeat_1 Member 99.7 1.4E-16 3.1E-21 135.9 7.7 84 283-394 7-92 (92)
40 KOG2017 Molybdopterin synthase 99.6 1.4E-16 3E-21 165.0 5.1 184 183-395 196-419 (427)
41 cd01531 Acr2p Eukaryotic arsen 99.6 6.2E-16 1.3E-20 136.3 8.3 100 271-395 3-112 (113)
42 cd00158 RHOD Rhodanese Homolog 99.6 1.8E-15 3.9E-20 124.6 7.4 88 277-393 2-89 (89)
43 PRK05597 molybdopterin biosynt 99.6 3.4E-16 7.3E-21 164.9 3.5 167 189-394 166-354 (355)
44 COG2897 SseA Rhodanese-related 99.6 2.4E-15 5.1E-20 154.4 9.5 122 271-406 12-143 (285)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 2.5E-15 5.5E-20 132.6 8.4 98 271-393 3-112 (113)
46 PRK01415 hypothetical protein; 99.6 4.8E-15 1E-19 149.5 10.1 101 271-396 113-213 (247)
47 TIGR02981 phageshock_pspE phag 99.6 4.7E-15 1E-19 130.4 8.6 81 285-394 17-97 (101)
48 PRK05320 rhodanese superfamily 99.6 9.9E-15 2.1E-19 147.9 10.0 101 270-394 110-215 (257)
49 PRK10287 thiosulfate:cyanide s 99.5 1.1E-14 2.4E-19 128.8 8.0 81 285-394 19-99 (104)
50 PRK00142 putative rhodanese-re 99.5 3.2E-14 6.9E-19 148.0 10.1 100 270-394 112-211 (314)
51 PRK05600 thiamine biosynthesis 99.5 3.6E-15 7.8E-20 158.2 3.0 170 189-390 182-369 (370)
52 PRK11784 tRNA 2-selenouridine 99.4 4.8E-13 1E-17 140.9 10.8 113 273-401 4-135 (345)
53 cd01446 DSP_MapKP N-terminal r 99.4 6.3E-13 1.4E-17 120.2 10.0 109 271-398 1-129 (132)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 1E-12 2.2E-17 136.8 10.1 104 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.0 6.9E-10 1.5E-14 113.4 9.0 123 271-405 6-140 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 6.4E-10 1.4E-14 122.0 7.5 80 276-387 399-482 (482)
57 KOG1529 Mercaptopyruvate sulfu 99.0 1.9E-09 4.2E-14 110.2 9.0 94 285-394 171-275 (286)
58 COG1054 Predicted sulfurtransf 98.8 4.2E-09 9.1E-14 108.3 5.4 99 271-394 114-212 (308)
59 KOG3772 M-phase inducer phosph 98.5 2.5E-07 5.4E-12 96.6 6.9 103 270-395 156-276 (325)
60 COG5105 MIH1 Mitotic inducer, 97.2 0.00068 1.5E-08 71.0 6.9 99 269-394 241-357 (427)
61 TIGR01244 conserved hypothetic 94.1 0.15 3.3E-06 47.1 6.8 111 270-401 13-130 (135)
62 COG2603 Predicted ATPase [Gene 94.0 0.079 1.7E-06 55.5 5.2 102 276-393 7-127 (334)
63 PF04273 DUF442: Putative phos 93.8 0.11 2.3E-06 47.0 5.1 88 269-373 12-105 (110)
64 PF13350 Y_phosphatase3: Tyros 88.5 1.7 3.7E-05 40.9 7.5 98 269-380 27-152 (164)
65 PF05237 MoeZ_MoeB: MoeZ/MoeB 88.4 0.064 1.4E-06 45.8 -2.1 46 189-237 3-48 (84)
66 KOG1093 Predicted protein kina 88.2 0.2 4.3E-06 56.6 1.0 95 271-391 623-717 (725)
67 PRK00142 putative rhodanese-re 84.7 0.11 2.4E-06 54.8 -3.1 51 270-330 14-64 (314)
68 cd00127 DSPc Dual specificity 82.4 2.6 5.6E-05 37.7 5.2 27 353-379 80-109 (139)
69 PF11127 DUF2892: Protein of u 81.1 3.6 7.8E-05 33.3 5.1 45 428-476 14-58 (66)
70 PF14159 CAAD: CAAD domains of 80.8 3.9 8.4E-05 35.9 5.5 37 446-482 48-84 (90)
71 PF05706 CDKN3: Cyclin-depende 78.3 5.2 0.00011 39.1 6.0 80 289-378 75-159 (168)
72 PRK07688 thiamine/molybdopteri 76.5 0.45 9.7E-06 50.7 -1.9 115 189-307 164-318 (339)
73 cd01445 TST_Repeats Thiosulfat 75.0 4.5 9.8E-05 37.5 4.5 71 189-269 53-124 (138)
74 KOG1717 Dual specificity phosp 71.6 3.6 7.8E-05 43.1 3.2 100 272-394 6-123 (343)
75 PLN02777 photosystem I P subun 68.9 6.7 0.00015 38.2 4.2 37 447-483 124-160 (167)
76 smart00195 DSPc Dual specifici 62.8 13 0.00028 33.4 4.8 29 352-380 76-107 (138)
77 PF01451 LMWPc: Low molecular 62.2 8.4 0.00018 35.0 3.4 36 357-392 1-41 (138)
78 TIGR03167 tRNA_sel_U_synt tRNA 58.4 29 0.00063 36.8 7.1 33 271-304 137-172 (311)
79 PLN02806 complex I subunit 57.6 13 0.00027 32.2 3.3 55 427-487 5-68 (81)
80 PLN02727 NAD kinase 52.3 24 0.00051 42.8 5.7 83 270-366 267-353 (986)
81 PF01442 Apolipoprotein: Apoli 52.2 2.4 5.2E-05 39.6 -2.0 43 86-128 40-82 (202)
82 PF09992 DUF2233: Predicted pe 51.5 18 0.00039 34.1 3.8 40 353-392 99-143 (170)
83 PF00782 DSPc: Dual specificit 51.4 26 0.00056 31.1 4.7 28 353-380 72-102 (133)
84 KOG0781 Signal recognition par 51.2 86 0.0019 35.8 9.3 106 72-189 271-385 (587)
85 PRK08223 hypothetical protein; 48.0 9.9 0.00022 40.0 1.6 16 183-198 160-175 (287)
86 smart00226 LMWPc Low molecular 47.7 20 0.00044 32.6 3.4 36 357-392 1-37 (140)
87 KOG3636 Uncharacterized conser 47.1 61 0.0013 36.6 7.3 21 287-307 327-347 (669)
88 PF05957 DUF883: Bacterial pro 37.7 49 0.0011 28.6 4.1 49 70-118 6-54 (94)
89 PRK08762 molybdopterin biosynt 37.4 41 0.00088 36.2 4.3 43 353-396 134-176 (376)
90 PF03853 YjeF_N: YjeF-related 34.8 64 0.0014 30.8 4.8 50 352-402 23-87 (169)
91 TIGR02689 ars_reduc_gluta arse 34.3 66 0.0014 29.1 4.6 35 356-390 2-37 (126)
92 PRK11391 etp phosphotyrosine-p 34.0 62 0.0013 30.2 4.4 37 355-392 3-40 (144)
93 PRK10126 tyrosine phosphatase; 33.8 52 0.0011 30.7 3.9 37 355-392 3-40 (147)
94 PTZ00242 protein tyrosine phos 32.1 2.2E+02 0.0047 27.3 7.9 19 352-370 96-115 (166)
95 COG2519 GCD14 tRNA(1-methylade 31.2 1.2E+02 0.0025 31.8 6.1 32 352-383 186-217 (256)
96 cd00115 LMWPc Substituted upda 30.4 47 0.001 30.3 3.0 37 356-392 2-40 (141)
97 COG3453 Uncharacterized protei 27.3 1E+02 0.0022 29.0 4.5 88 269-373 13-106 (130)
98 cd01448 TST_Repeat_1 Thiosulfa 27.2 40 0.00086 29.6 1.8 61 176-245 17-84 (122)
99 PF05957 DUF883: Bacterial pro 26.7 75 0.0016 27.4 3.4 57 78-134 7-63 (94)
100 COG2453 CDC14 Predicted protei 25.9 70 0.0015 30.9 3.4 27 353-379 104-133 (180)
101 PRK13530 arsenate reductase; P 25.8 1.1E+02 0.0024 28.2 4.5 35 355-389 4-39 (133)
102 PLN03050 pyridoxine (pyridoxam 25.7 98 0.0021 31.8 4.6 31 354-385 60-93 (246)
103 PF03162 Y_phosphatase2: Tyros 24.1 95 0.0021 29.9 3.9 38 353-394 90-129 (164)
104 PRK12361 hypothetical protein; 23.9 1.1E+02 0.0025 34.5 5.1 17 353-369 174-191 (547)
105 PTZ00393 protein tyrosine phos 23.7 1.4E+02 0.0031 30.9 5.2 27 353-379 169-197 (241)
106 cd01449 TST_Repeat_2 Thiosulfa 23.6 1.3E+02 0.0028 26.0 4.4 64 189-268 40-103 (118)
107 PF07464 ApoLp-III: Apolipopho 23.2 1.3E+02 0.0028 29.1 4.6 40 96-135 35-74 (155)
108 COG0394 Wzb Protein-tyrosine-p 23.1 1.1E+02 0.0024 28.7 4.0 37 355-391 3-40 (139)
109 PF02590 SPOUT_MTase: Predicte 22.3 2.4E+02 0.0052 27.1 6.2 64 349-412 62-135 (155)
110 TIGR00853 pts-lac PTS system, 21.8 1.1E+02 0.0024 26.7 3.6 38 354-392 3-44 (95)
111 KOG1615 Phosphoserine phosphat 20.3 1.6E+02 0.0034 30.1 4.6 88 128-238 41-128 (227)
112 PF02302 PTS_IIB: PTS system, 20.3 1.3E+02 0.0028 25.0 3.5 32 356-388 1-37 (90)
113 COG0062 Uncharacterized conser 20.1 1.7E+02 0.0036 29.5 4.8 31 354-385 49-82 (203)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=5.1e-20 Score=191.00 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=149.2
Q ss_pred chhhhhhhhhHHhhhhhhccCc---------ceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHH
Q 008681 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~ 230 (557)
-+++|||++.+..-+-.|.|.+ +...|.-||++..+.-++.+....... ....+. ....|+.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----~~~~lp-----~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----LPHMLP-----SEEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----cCCCCC-----CHHHHHH
Confidence 4667777777754444556653 124577899998888776653322111 111111 1244677
Q ss_pred HHHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhCCCC---------------------C-------------------
Q 008681 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G------------------- 270 (557)
Q Consensus 231 l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~g~~---------------------g------------------- 270 (557)
+.+.+|+.++++||+|.-. |...+. -+||.+++.||. +
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~-g~~~a~-r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGK-GIFSAA-RVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKV 171 (320)
T ss_pred HHHHcCCCCCCEEEEEcCC-CcchHH-HHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccc
Confidence 7788899999999865321 111111 134544432221 0
Q ss_pred -------------------ccCHHHHHHHHhCCCCcEEEEeCChhhH-----------hhCCCCcCcccccccccccCcc
Q 008681 271 -------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP 320 (557)
Q Consensus 271 -------------------~ISp~Ea~elLa~d~~avLIDVRs~~Ef-----------~~GHIPGAi~a~~~~~~nIPl~ 320 (557)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~ 242 (320)
T PLN02723 172 YQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFP 242 (320)
T ss_pred cccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHH
Confidence 035567777773 456889999999998 569999999 89987
Q ss_pred cccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH-cCCcc
Q 008681 321 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRI 399 (557)
Q Consensus 321 eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka-aGLPV 399 (557)
.+.... ..++++++|++++.++|++ ++++||+||++|.|+..+++.|+.+||++|++|+|||.+|.. .++|+
T Consensus 243 ~~~~~~-~~~~~~~el~~~~~~~gi~------~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 243 QMLDSS-QTLLPAEELKKRFEQEGIS------LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HhcCCC-CCCCCHHHHHHHHHhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 654332 3467788999999888874 789999999999999999999999999999999999999987 46888
Q ss_pred ccc
Q 008681 400 KEL 402 (557)
Q Consensus 400 ~~~ 402 (557)
++.
T Consensus 316 ~~~ 318 (320)
T PLN02723 316 ATS 318 (320)
T ss_pred cCC
Confidence 763
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.81 E-value=8.7e-20 Score=159.61 Aligned_cols=99 Identities=25% Similarity=0.202 Sum_probs=84.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
..++++++.++++.+++.+|||||++.||..+|||||+ |+|+.++...... ++
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~--------------l~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGE--------------LA----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHh--------------cC-----
Confidence 46999999999965546899999999999999999999 9998765432221 11
Q ss_pred ccCCCCEEEEEeCCChhHHHHHHHHHHhcCCC-eEEecccHHHHHHcC
Q 008681 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RS~~AA~~L~~lGykn-VyvLdGG~~aWkaaG 396 (557)
.+++++||+||++|.||..+++.|+.+||+| |++|+||+.+|+.+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1367899999999999999999999999998 999999999999876
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=5.6e-20 Score=186.86 Aligned_cols=215 Identities=18% Similarity=0.182 Sum_probs=146.0
Q ss_pred chhhhhhhhhHHhhhhhhccCcc----------eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHH
Q 008681 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE 229 (557)
-|..++|++++..-+-.|.|.|+ .-.|.-||++..+..+..+.... .+ +...... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~----~~----~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDH----TS----PLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCC----CC----CCCCCCC-CHHHHH
Confidence 36778888887665567888885 24567789998776555432111 11 1111111 123456
Q ss_pred HHHHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhCCCC---------------------C-----------------c
Q 008681 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------D 271 (557)
Q Consensus 230 ~l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~g~~---------------------g-----------------~ 271 (557)
.+.+.+|++++++||+|.-..+.. +.. .||.+...||. + .
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~~-a~~-~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLFS-APR-AWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAV 154 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCch-HHH-HHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccce
Confidence 667778999999998653211111 111 23433332221 0 0
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHh-----------hCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHH
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~-----------~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL 340 (557)
.+.+++...+. +++++|||+|+++||. .||||||+ |+|+.++... ..++++++++.++
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~ 223 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIF 223 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHH
Confidence 12234444442 3468999999999994 69999999 8997776532 2356678888888
Q ss_pred HHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH-cCCccccc
Q 008681 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 341 ~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka-aGLPV~~~ 402 (557)
.+.|++ ++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|++++
T Consensus 224 ~~~g~~------~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 FGRGVS------FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 888874 788999999999999999999999999999999999999998 79999864
No 4
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1e-19 Score=186.39 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred cchhhhhhhhhHH-----hhhhhhccCcc--eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHH
Q 008681 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (557)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l 231 (557)
--|+.|||.+++. .++-++..-.. -..|.-||++..+..++...++-.....+ ++-. -..|+.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~----~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPH----MLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCC----CCCC-----HHHHHHH
Confidence 4578899998865 22333332222 36788899999999988877766332112 2222 2336677
Q ss_pred HHhcCcCCCCCeeehhhhhhHHHHHHH--HHHHHHhCCCC--------------------------------------Cc
Q 008681 232 ERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGYS--------------------------------------GD 271 (557)
Q Consensus 232 ~~~lG~~~~~pVv~~~v~~g~~a~l~~--~~~l~~~~g~~--------------------------------------g~ 271 (557)
.+.+||..+++||+|.- ...+++ +||++++.|+. ..
T Consensus 82 ~~~~GI~~d~tVVvYdd----~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTVVVYDD----GGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEEEEECC----CCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 77899999999985433 233333 57776664331 12
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhh----------CCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHH
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~----------GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~ 341 (557)
.+..+....+. .+..+|||+|++++|+. ||||||+ |+|+..+.. .+.+++.+++++.++.
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 34556666663 46788999999999987 9999999 999988776 4567777788888887
Q ss_pred HHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH-cCCccccc
Q 008681 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka-aGLPV~~~ 402 (557)
..|++ ++++||+||++|.||+..+..|+.+|++++++|+|+|.+|.+ .+.|++++
T Consensus 228 ~~gi~------~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGID------PDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCCC------CCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 88885 899999999999999999999999999988999999999997 55688764
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.78 E-value=4e-19 Score=153.21 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=81.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
.|+++++.+++. +++++|||||++.||..+|||||+ |+|+.++...... +...+ .
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~~~---------~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDENL---------D 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHhhh---------h
Confidence 589999999985 567899999999999999999999 9998776432111 11100 1
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2478999999999999999999999999999999999999996
No 6
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.78 E-value=5.5e-19 Score=197.51 Aligned_cols=217 Identities=17% Similarity=0.093 Sum_probs=154.3
Q ss_pred chhhhhhhhhHHhhhhhhccCcceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC
Q 008681 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~ 239 (557)
-++.++|++.+..-+-.|.|.|+.--|.-||++..+..++...........+ .+.. ...++...+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCCC-----HHHHHHHHHHcCCCC
Confidence 4778888888866566788888877888899998776665443221111111 1111 223556666789999
Q ss_pred CCCeeehhhhhhHHHHHHHHHHHHHhCCCC--------------------------------------CccCHHHHHHHH
Q 008681 240 NDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLSPKSTLELL 281 (557)
Q Consensus 240 ~~pVv~~~v~~g~~a~l~~~~~l~~~~g~~--------------------------------------g~ISp~Ea~elL 281 (557)
+++||+|.-..+.. +.. +||.+++.|+. ..++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~-A~R-~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGGW-AGR-FIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCch-HHH-HHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 99998643211111 111 34544432220 024667888887
Q ss_pred hCCCCcEEEEeCChhhHh--------hCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCC
Q 008681 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 282 a~d~~avLIDVRs~~Ef~--------~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~k 353 (557)
. +++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++++.++|++ +
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi~------~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGIT------P 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCCC------C
Confidence 4 5678999999999994 79999999 88876543222 2356678899999888884 7
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH-cCCcccccC
Q 008681 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKELK 403 (557)
Q Consensus 354 d~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka-aGLPV~~~~ 403 (557)
+++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++..
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 89999999999999999999999999999999999999987 579998743
No 7
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1e-18 Score=149.63 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
.|+++++.+++.+ +.+|||+|+++||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 5899999999864 3899999999999999999999 899776643210 1
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcc
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.|+..++..|+++||+++++|+||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2478899999999999999999999999999999999999999999985
No 8
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=1.2e-18 Score=160.33 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=89.2
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcC--cccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhh
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGA--i~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~ 347 (557)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. ... +.+++++.... .
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~~-l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QGR-VKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-ccc-cCCHHHHHHHH-h-----
Confidence 46899999999853 468999999999999999999 7 788644321 111 12222222211 1
Q ss_pred hcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccC
Q 008681 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 348 Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~ 403 (557)
.++++++||+||++|.||..++..|...||++|++|.|||.+|+++|+|+++..
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 124788999999999999999999999999999999999999999999998844
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=9.1e-19 Score=149.62 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.2
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
|+++++.+++.++ ++.+|||||++.||..+|||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999999754 35789999999999999999999 999766543222111
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
..++++||+||++|.||..+++.|+.+||+ |++|+||+.+|+.
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 125789999999999999999999999999 9999999999963
No 10
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.3e-18 Score=154.34 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCCh-------hhHhhCCCCcCcccccccccccCcccccch---hhhhhcCchhhhHHHH
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~-------~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~---l~~Llk~~e~L~~lL~ 341 (557)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++++++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999995 457899999999 999999999999 8997766432 2345566677877777
Q ss_pred HHHHhhhcccCCCCEEEEEeCC-ChhHHHHHHHHHHhcCCCeEEecccHHHHHHcC
Q 008681 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~s-G~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaG 396 (557)
..++ +++++|||||++ |.++..+++.|+.+||++|++|+||+.+|+++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6665 489999999999 589999999999999999999999999998865
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.76 E-value=1.7e-18 Score=148.79 Aligned_cols=99 Identities=23% Similarity=0.235 Sum_probs=80.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhccc
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~ 351 (557)
|+++++.++++++++++|||||++.||..+|||||+ |+|+..+..... . ...+.+ ..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~---~---~~~~~~--------~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFL---E---IEEDIL--------DQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHH---H---hhHHHH--------hhC
Confidence 689999999976667899999999999999999999 999876543210 0 000000 123
Q ss_pred CCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
+++++||+||.+|.||..++..|+++||+ +++|.||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 57899999999999999999999999998 999999999996
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=9.1e-19 Score=151.02 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=85.1
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccC
Q 008681 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~ 352 (557)
+++++.++++.+++.+|||+|++.||..||||||+ |+|+.++... ...+++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888842567999999999999999999999 8998776432 12234455555544443 4
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 13
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=1.8e-18 Score=151.10 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=87.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
..++++++.+++. +.+.++||+|++.||..+|||||+ |+|+..+.....
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~---------------------- 53 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMR---------------------- 53 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHH----------------------
Confidence 4689999999985 346899999999999999999999 888765432211
Q ss_pred ccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccc
Q 008681 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~ 401 (557)
..++++++++||.+|.+|..++..|+..||+++++++||+.+|+..++|+++
T Consensus 54 ~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 54 QADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred hcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1247889999999999999999999999999999999999999999999876
No 14
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.76 E-value=1.6e-18 Score=152.48 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=90.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhh-----------CCCCcCcccccccccccCcccccchhhhhhcCchhhhHHH
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~-----------GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL 340 (557)
++++++.++++ +++++|||+|++.||.. ||||||+ |+|+..+.... ..+++++++++.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 45689999999999987 9999999 89987655432 2455667787777
Q ss_pred HHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 341 ~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
..+++ +++++||+||++|.||.++++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 77776 3789999999999999999999999999999999999999963
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.75 E-value=6.3e-18 Score=148.51 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCccCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhh
Q 008681 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~ 347 (557)
...++++++.++++++ ++.+|||+|++.+|..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3479999999999754 46899999999999999999999 888766532100
Q ss_pred hcccCCCCEEEEEeCCCh--hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcc
Q 008681 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 348 Lk~~~kd~~VIVyC~sG~--RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV 399 (557)
..++++++||+||.+|. ++..+++.|+++||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 01357899999999874 899999999999995 999999999999999985
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=5.8e-18 Score=151.51 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=88.8
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhh
Q 008681 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~L 348 (557)
...|+++++.+++.++++++|||+|++.||..+|||||+ |+|+.++......+.+ + .+...+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~~---- 68 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPLD---- 68 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhcccc----
Confidence 357999999999965567899999999999999999999 9998776543222110 0 011112
Q ss_pred cccCCCCEEEEEeCCChhHHHHHHHHHHhcC-CCeEEecccHHHHHHcCCcc
Q 008681 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~RS~~AA~~L~~lGy-knVyvLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.||..+++.|+.+|| +++++|+||+.+|+....|.
T Consensus 69 --~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 --NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred --cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 35789999999999999999999999999 79999999999999876554
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.1e-17 Score=158.36 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChh----hHhhC---------CCCcCcccccccccccCcc---cccchhhhhhcCc
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYLP---EVGGSVKKLLRGG 333 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~----Ef~~G---------HIPGAi~a~~~~~~nIPl~---eL~~~l~~Llk~~ 333 (557)
..|+++++.+++. +++.+|||||++. ||..| |||||+ |+|+. ++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4799999999995 4568999999876 46544 999999 77742 222210 0
Q ss_pred hhhhHHHHHHHHhhhcccCCCCEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcc
Q 008681 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 334 e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV 399 (557)
..+...+.+++. .+++++||+||++|. +|..+++.|+++||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 123333433332 248899999999997 8999999999999999999999999999999985
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.73 E-value=1.3e-17 Score=143.90 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhh--hcCchhhhHHHHHHHHhhh
Q 008681 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKL--LRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 272 ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~L--lk~~e~L~~lL~alGI~~L 348 (557)
|+++++.+++.++ ++.+|||+|++.||..||||||+ |+|+..+......+ ++....+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~~~~~~----------- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQLPTVPRLE----------- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhcccccccccccchHHHH-----------
Confidence 6899999999643 36899999999999999999999 89876543211100 11111111
Q ss_pred cccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
..++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 62 --~~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 --NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred --hhcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 0247899999999999999999999999999999999999996
No 19
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.72 E-value=1.8e-17 Score=142.93 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=80.7
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 271 ~ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
.|+++++.+++..+ .+.++||+|++.||..+|||||+ |+|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 37899999999653 36899999999999999999999 99986654322111 0
Q ss_pred ccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
..++++++|+||++|.||..+++.|.++||+++++|+||+.+|+.
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 113688999999999999999999999999999999999999975
No 20
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.72 E-value=1.5e-17 Score=138.30 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=77.2
Q ss_pred CCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCC
Q 008681 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~s 363 (557)
+++.+|||+|++.||..+|||||+ |+|+..+....... . ...+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-D-ILEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-C-HHHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999999 88877654332110 0 002222222233 3578999999999
Q ss_pred ChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCc
Q 008681 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 364 G~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLP 398 (557)
|.++..+++.|+.+||++|++|+||+.+|+..|+|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998875
No 21
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.72 E-value=1.7e-17 Score=140.47 Aligned_cols=93 Identities=27% Similarity=0.372 Sum_probs=80.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhh--CCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhh
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~--GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~L 348 (557)
.|+++++.++++++++++|||+|++.||.. +|||||+ |+|+.++.....
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~--------------------- 51 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG--------------------- 51 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh---------------------
Confidence 378999999986546799999999999999 9999999 899776543211
Q ss_pred cccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
..+++++||+||++|.++..+++.|+..||+++++|+||+.+|+
T Consensus 52 -~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 -DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred -hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 12478999999999999999999999999999999999999996
No 22
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.72 E-value=1.5e-17 Score=169.08 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=100.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCC----------hhhHhhCCCCcCcccccccccccCcccccc---hhhhhhcCchhhh
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs----------~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~---~l~~Llk~~e~L~ 337 (557)
.++++++.+++ ++++++|||+|+ +.+|+.||||||+ |+|+..+.. ....++++++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48999999999 457799999997 7899999999999 777654432 2234556678899
Q ss_pred HHHHHHHHhhhcccCCCCEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCc
Q 008681 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 338 ~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~ 404 (557)
++++++|++ ++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|+++|+|+.+..+
T Consensus 77 ~~~~~~Gi~------~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGVN------QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCCC------CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 999999985 8999999999877 467889999999999999999999999999999987643
No 23
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.72 E-value=2.2e-17 Score=141.72 Aligned_cols=108 Identities=29% Similarity=0.488 Sum_probs=80.9
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccC
Q 008681 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~ 352 (557)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|+..+..... ......+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPDEP--SLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSSSS--BCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccccc--cccccccccccccccc----ccc
Confidence 689999999 6789999999999999999999999 888755411100 0111222222333333 245
Q ss_pred CCCEEEEEeCCChhHHHHHHH-----HHHhcCCCeEEecccHHHHHHc
Q 008681 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 353 kd~~VIVyC~sG~RS~~AA~~-----L~~lGyknVyvLdGG~~aWkaa 395 (557)
++++|||||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 788999999999988887777 8899999999999999999863
No 24
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.9e-17 Score=148.52 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=80.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchh--hhhhcC--------------chh
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRG--------------GRE 335 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l--~~Llk~--------------~e~ 335 (557)
|+++++.+++. ++.+|||||++.||..||||||+ |+|+....... ....+. ...
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68999999985 46899999999999999999999 89976432210 000000 122
Q ss_pred hhHHHHH---HHHhhhcccCCCCEEEEEeC-CChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 336 LDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 336 L~~lL~a---lGI~~Lk~~~kd~~VIVyC~-sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
++..+.. .++ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 71 ~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3333333 244 58999999997 68999999999999999 69999999999975
No 25
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=150.75 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=94.9
Q ss_pred CCCCCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHH
Q 008681 266 GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 266 ~g~~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI 345 (557)
......++.+++++++. .++.++||||+|+||.+||||.++ |||+...... ..+++++|+++ .|.
T Consensus 19 ~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~ 83 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGS 83 (136)
T ss_pred cCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hcc
Confidence 34456789999999995 456999999999999999999999 9998654332 22445555543 333
Q ss_pred hhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCccc
Q 008681 346 RNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~ 400 (557)
. +.+.++.|||+|++|.||..|...|..+||+||.+|.|||.+|...++|..
T Consensus 84 ~---kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 S---KPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred c---CCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 2 235677999999999999999999999999999999999999999998864
No 26
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.71 E-value=2.8e-17 Score=140.58 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhH-hhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef-~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~~~------ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHKPA------ 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---cccccC------
Confidence 57899999985 457899999999998 579999999 8887655321110 00 000011
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcC
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaG 396 (557)
++++++||+||.+|.|+..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3478999999999999999999999999999999999999998765
No 27
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=2.7e-17 Score=170.72 Aligned_cols=118 Identities=17% Similarity=0.295 Sum_probs=99.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeC--------C-hhhHhhCCCCcCcccccccccccCcccccch---hhhhhcCchhhhH
Q 008681 271 DLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDD 338 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVR--------s-~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~---l~~Llk~~e~L~~ 338 (557)
.|+++++.+++. +++.+|||+| + ..+|..||||||+ ++|+..+... ...++++++.|++
T Consensus 23 lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred eecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 689999999995 5679999996 3 3789999999999 7776554332 3455667789999
Q ss_pred HHHHHHHhhhcccCCCCEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccC
Q 008681 339 TLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 339 lL~alGI~~Lk~~~kd~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~ 403 (557)
.|+++||. ++++|||||..|. .+.++++.|+.+||++|++|+||+.+|+.+|+|+++..
T Consensus 94 ~l~~~Gi~------~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 94 AVSALGIE------NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHcCCC------CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999985 7889999999886 56788999999999999999999999999999998753
No 28
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.70 E-value=3.7e-17 Score=150.79 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=90.2
Q ss_pred cCHHHHHHHHhC---CCCcEEEEeCCh--------hhHhh------------CCCCcCcccccccccccCcccccc---h
Q 008681 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGG---S 325 (557)
Q Consensus 272 ISp~Ea~elLa~---d~~avLIDVRs~--------~Ef~~------------GHIPGAi~a~~~~~~nIPl~eL~~---~ 325 (557)
++++++.+.+.+ +++.+|||+|.. .+|.. ||||||+ ++|+..+.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999853 467999999987 89988 9999999 777654422 2
Q ss_pred hhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCC---ChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 326 l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~s---G~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
....+++++++++.+.++||+ ++++||+||.+ |.++.++++.|+.+|+++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI~------~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCCC------CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 234556667899999999985 78999999986 779999999999999999999999999996
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.69 E-value=5.3e-17 Score=150.97 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=81.2
Q ss_pred HHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCE
Q 008681 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~ 356 (557)
+.+++.++.+++|||||++.+|+.+|||||+ ++|...+... +.. .+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~--------------l~~--------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQA--------------LEK--------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHH--------------HHh--------cCCCCC
Confidence 4566655556899999999999999999999 7775443321 111 236789
Q ss_pred EEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCc
Q 008681 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 357 VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~ 404 (557)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++...+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987544
No 30
>PRK07411 hypothetical protein; Validated
Probab=99.69 E-value=4.4e-17 Score=173.63 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=125.6
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHH--------H
Q 008681 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSAT--------L 256 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~--~~pVv~~~v~~g~~a~--------l 256 (557)
||||+|++|+..+ .+..|.. +| |++|..+..+ +.++.|.++-++|+.+ ...++++-........ +
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~-~g-vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAE-GG-VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCcc-CC-cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999986432 3445666 77 8999999999 6889999999888643 2333321111100000 0
Q ss_pred HH-----HHHHHH-----------hCCCCCccCHHHHHHHHhCCC-CcEEEEeCChhhHhhCCCCcCcccccccccccCc
Q 008681 257 WI-----FYWWWT-----------YGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (557)
Q Consensus 257 ~~-----~~~l~~-----------~~g~~g~ISp~Ea~elLa~d~-~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl 319 (557)
-. -|=.+. .+.....|+++++.++++.+. +.+|||||++.||..+|||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 00 000000 011124699999999996543 5799999999999999999999 9998
Q ss_pred ccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcc
Q 008681 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 320 ~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV 399 (557)
.++..... .+.+. ..+++++||+||++|.||..+++.|+++||++ +.|+||+.+|++...|.
T Consensus 325 ~~l~~~~~-----~~~l~------------~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEKVK------------ELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHHHh------------hcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 76643210 01111 12478999999999999999999999999985 68999999999876654
No 31
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.68 E-value=8.2e-17 Score=136.26 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhccc
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~ 351 (557)
++|+++.+++ .++.++||+|++.+|..+|||||+ |+|+.++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 4788999988 357899999999999999999999 899765543211 12
Q ss_pred CCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
+++++||+||.+|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 4678999999999999999999999999 9999999999996
No 32
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.68 E-value=4.6e-17 Score=173.42 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=126.9
Q ss_pred ecccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHHHHH--
Q 008681 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYW-- 261 (557)
Q Consensus 188 yG~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~--~~pVv~~~v~~g~~a~l~~~~~-- 261 (557)
+|+|++|+.|+... .+..|.+ +| |++|..+..+ +.++.|.++-++|+.. ...++++.... ..+..+-|
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~d~~~---~~~~~~~~~~ 256 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAE-GG-VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVYDALE---MTYRTIKIRK 256 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCcc-CC-ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCC---CceeeEeecc
Confidence 58999999875332 3455666 67 8999999998 6889999998888643 23333211111 00000000
Q ss_pred --------------HHHh--------CCCCCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCc
Q 008681 262 --------------WWTY--------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (557)
Q Consensus 262 --------------l~~~--------~g~~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl 319 (557)
.+-. ..-...|+++++.++++++++.+|||+|+++||..+|||||+ |+|+
T Consensus 257 ~~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~ 328 (392)
T PRK07878 257 DPSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPK 328 (392)
T ss_pred CCCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcCh
Confidence 0000 001135899999999975556899999999999999999999 9998
Q ss_pred ccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCc
Q 008681 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 320 ~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLP 398 (557)
.++.... .+ ..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 329 ~~l~~~~--------~~------------~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 329 SEILSGE--------AL------------AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred HHhcchh--------HH------------hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 7654210 00 11357899999999999999999999999999999999999999987654
No 33
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.68 E-value=6.8e-17 Score=144.11 Aligned_cols=103 Identities=26% Similarity=0.337 Sum_probs=81.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHh-hCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~-~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
|+++++.++++++++.++||||++.||+ .+|||||+ |+|+.++.... ++..+. ..+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~-~~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFL-AELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHH-HHHHhh-------
Confidence 6899999999765679999999999999 99999999 88877654211 011111 111111
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.+++++||+||++|.||..+++.|+++||++++.|.||+.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 24789999999999999999999999999999999999999965
No 34
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.68 E-value=1.2e-16 Score=143.84 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.1
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEeCChhhHhhCCCCcCcccccccccccCcc-cccchhhhhhcCchhhhHHHHHHH
Q 008681 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 271 ~ISp~Ea~elLa~d-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~-eL~~~l~~Llk~~e~L~~lL~alG 344 (557)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+....... ...++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~----------~~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDK----------PGVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHh----------hcccc
Confidence 58999999999653 46899999999999999999999 99975 333211100 00011
Q ss_pred HhhhcccCCCCEEEEEeC-CChhHHHHHHHHHHh------------cCCCeEEecccHHHHH
Q 008681 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~-sG~RS~~AA~~L~~l------------GyknVyvLdGG~~aWk 393 (557)
.+++++|||||+ +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 258899999997 999999999999985 9999999999999984
No 35
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=1.1e-16 Score=179.11 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=101.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCccccc---chhhhhhcCchhhhHHHHHHHHh
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~---~~l~~Llk~~e~L~~lL~alGI~ 346 (557)
-.|+++++.+++. +++++|||+|++++|..||||||+ ++|+.... .....++++++++++.+.++|++
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3589999999995 567999999999999999999999 77654321 11234566678899999999985
Q ss_pred hhcccCCCCEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCc
Q 008681 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 347 ~Lk~~~kd~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~ 404 (557)
++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|+.+|+|+.+..+
T Consensus 80 ------~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 80 ------PDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred ------CCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 8999999999874 888999999999999999999999999999999977543
No 36
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.67 E-value=1.3e-16 Score=136.34 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=70.3
Q ss_pred CCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCC
Q 008681 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~s 363 (557)
+++.+|||+|++.+|..+|||||+ |+|+..+.... ..++ .++ ..+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~-------~~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRS-------QELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCH-------HHHH----Hhh-----cCCCCCCEEEEeCC
Confidence 457899999999999999999999 88876543221 1111 111 12578999999999
Q ss_pred ChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 364 G~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
|.++..+++.|+.+||++|++|+||+.+|++
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.67 E-value=1.7e-16 Score=167.96 Aligned_cols=110 Identities=26% Similarity=0.358 Sum_probs=91.2
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
..|+++++.+++.+ +.+|||+|++.||..+|||||+ |+|+..+...... .+
T Consensus 3 ~~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~--------------~~----- 53 (376)
T PRK08762 3 REISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIET--------------HL----- 53 (376)
T ss_pred ceeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhh--------------hc-----
Confidence 36899999999953 5899999999999999999999 8997655432211 11
Q ss_pred ccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCccchhh
Q 008681 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALT 409 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~~~ale 409 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|++.|+|++......+.+
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~~ 112 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDEQ 112 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHHH
Confidence 14789999999999999999999999999999999999999999999998865433333
No 38
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2e-16 Score=136.22 Aligned_cols=98 Identities=31% Similarity=0.468 Sum_probs=81.9
Q ss_pred HHHHHhCCCCcEEEEeCChhhHhhCCCCc-CcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCC
Q 008681 277 TLELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRS 355 (557)
Q Consensus 277 a~elLa~d~~avLIDVRs~~Ef~~GHIPG-Ai~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~ 355 (557)
....+...++.+|||||++.||..+|||+ ++ ++|+.++........ .++++
T Consensus 11 ~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~ 62 (110)
T COG0607 11 EAALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDD 62 (110)
T ss_pred HHHHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCC
Confidence 33334345689999999999999999999 88 999888764322110 14789
Q ss_pred EEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCccccc
Q 008681 356 KVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (557)
Q Consensus 356 ~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~ 402 (557)
++|+||++|.||..++..|+.+||++++++.||+.+|+..++|+...
T Consensus 63 ~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 63 PIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred eEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 99999999999999999999999999999999999999999998763
No 39
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.66 E-value=1.4e-16 Score=135.86 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.6
Q ss_pred CCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeC
Q 008681 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (557)
Q Consensus 283 ~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~ 362 (557)
++++++|||+|++.||..+|||||+ |+|+..+...... .+ .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999999 8997654321000 01 135889999999
Q ss_pred CChh--HHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 363 sG~R--S~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
+|.+ |..+++.|+++||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999973
No 40
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.63 E-value=1.4e-16 Score=164.99 Aligned_cols=184 Identities=21% Similarity=0.244 Sum_probs=137.2
Q ss_pred eEEEee--cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC-CCCeeehhhhhhHHHHHH
Q 008681 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (557)
Q Consensus 183 ~~~~~y--G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~-~~pVv~~~v~~g~~a~l~ 257 (557)
-+||-| ||||||++|++++ ++.+|.+ .| |++|+.|.++ +++|+|.++-++|+.+ -+|.++ +|.|..+-+.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r 270 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFR 270 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeE
Confidence 456666 8999999999998 9999999 77 9999999999 7999999999988663 345543 3444333211
Q ss_pred HHHHHHHh---------------------CC---C----------CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCC
Q 008681 258 IFYWWWTY---------------------GG---Y----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 303 (557)
Q Consensus 258 ~~~~l~~~---------------------~g---~----------~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHI 303 (557)
.+-++-+. -+ + ..+||..++++++++++..+|||||++.||+..|+
T Consensus 271 ~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~l 350 (427)
T KOG2017|consen 271 TIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRL 350 (427)
T ss_pred EEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEec
Confidence 11111000 00 0 13588889999998778899999999999999999
Q ss_pred CcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCC-Ce
Q 008681 304 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RA 382 (557)
Q Consensus 304 PGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyk-nV 382 (557)
|+|+ |||+.++....++.. . |- ......+|+++|+.|+.|+.+++.|+...+. +|
T Consensus 351 P~av--------NIPL~~l~~~~~~~~------~------~~----~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~v 406 (427)
T KOG2017|consen 351 PEAV--------NIPLKELRSRSGKKL------Q------GD----LNTESKDIFVICRRGNDSQRAVRILREKFPDSSV 406 (427)
T ss_pred cccc--------ccchhhhhhhhhhhh------c------cc----ccccCCCEEEEeCCCCchHHHHHHHHhhCCchhh
Confidence 9999 999998876543111 0 00 0124578999999999999999999976654 67
Q ss_pred EEecccHHHHHHc
Q 008681 383 FLVQGGFQSWVKE 395 (557)
Q Consensus 383 yvLdGG~~aWkaa 395 (557)
+-+.||+.+|...
T Consensus 407 rDvigGl~~w~~~ 419 (427)
T KOG2017|consen 407 RDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhHHHHHHHh
Confidence 7889999999864
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.63 E-value=6.2e-16 Score=136.29 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 271 ~ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
.|+++++.+++..+ ++.+|||||++ ||..+|||||+ ++|+.++......+ ....+.
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc----
Confidence 58999999999654 46789999999 99999999999 99987765432221 111222
Q ss_pred ccCCCCEEEEEeC-CChhHHHHHHHHHH--------hcCCCeEEecccHHHHHHc
Q 008681 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 350 ~~~kd~~VIVyC~-sG~RS~~AA~~L~~--------lGyknVyvLdGG~~aWkaa 395 (557)
+++++|||||. +|.|+..++..|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 36789999998 67899888887754 4999999999999999863
No 42
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.60 E-value=1.8e-15 Score=124.61 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=72.7
Q ss_pred HHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCE
Q 008681 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~ 356 (557)
+.+++. +++..|||+|++.+|..+|||||+ ++|+..+.... ...+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhhc------cCCCCe
Confidence 345553 568999999999999999999999 88876544321 0011 258899
Q ss_pred EEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHH
Q 008681 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 357 VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWk 393 (557)
||+||..|.++..+++.|+.+||+++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 43
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.60 E-value=3.4e-16 Score=164.92 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=117.4
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHHHHHHHH
Q 008681 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~--~~pVv~~~v~~g~~a~l~~~~~l~~ 264 (557)
|||++|++|+..+ ....|.. +| |++|.-+..+ +.++.|.++-++|+.+ .+.++.+..... .+.. +.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~---~~~~--~~~~ 237 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQ-AG-VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGYYDSLDG---TWEY--IPVV 237 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccc-cC-cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEEEECCCC---eEEE--Eecc
Confidence 5899999887543 2334555 66 8999999999 6888999998888643 333432111110 0000 0000
Q ss_pred hC------------------CCCCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchh
Q 008681 265 YG------------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 326 (557)
Q Consensus 265 ~~------------------g~~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l 326 (557)
.. +....++++++.++. .+.+|||+|+++||+.+|||||+ |+|+.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~ 306 (355)
T PRK05597 238 GNPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGA 306 (355)
T ss_pred CCCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcc
Confidence 00 111246677777543 36899999999999999999999 99987654321
Q ss_pred hhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 327 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 327 ~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.. . ..+++++||+||++|.||..+++.|+++||++|++|+||+.+|++
T Consensus 307 ~~--------------~------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 NP--------------P------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred cc--------------c------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 10 0 124788999999999999999999999999999999999999975
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.4e-15 Score=154.40 Aligned_cols=122 Identities=21% Similarity=0.233 Sum_probs=99.8
Q ss_pred ccCHHHHHHHHhCC----CCcEEEEeCCh--hhHhhCCCCcCcccccccccccCcccccch---hhhhhcCchhhhHHHH
Q 008681 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~Ea~elLa~d----~~avLIDVRs~--~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~---l~~Llk~~e~L~~lL~ 341 (557)
.|+++.+.+.|... .++.+++.+.. .+|..+|||||+ .+++...... ..++++++++|.++++
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 58899999988421 25667766665 899999999998 5554433222 3578889999999999
Q ss_pred HHHHhhhcccCCCCEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCccc
Q 008681 342 AAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~~~ 406 (557)
++||+ +|++||+|+..+. .+.+++|.|+.+|+++|++|+||+.+|+++|+|++...+..
T Consensus 84 ~~GI~------~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~ 143 (285)
T COG2897 84 ELGIR------NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEP 143 (285)
T ss_pred HcCCC------CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCC
Confidence 99996 8999999997655 88999999999999999999999999999999999755543
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.59 E-value=2.5e-15 Score=132.58 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=74.9
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHH
Q 008681 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 271 ~ISp~Ea~elLa~d-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI 345 (557)
.|+++++++++.++ ++.+|||||++ ||..+|||||+ |+|+..+......++ ..+..
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhhh
Confidence 58999999999654 46899999999 99999999999 999877654332221 11111
Q ss_pred hhhcccCCCCEEEEEeCC-ChhHHHHHHHHH----HhcC--CCeEEecccHHHHH
Q 008681 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~s-G~RS~~AA~~L~----~lGy--knVyvLdGG~~aWk 393 (557)
.+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 256799999997 578888776654 3475 78999999999996
No 46
>PRK01415 hypothetical protein; Validated
Probab=99.58 E-value=4.8e-15 Score=149.50 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=83.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
.|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+...... +++ ...
T Consensus 113 ~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~-------~~~---------~~~ 167 (247)
T PRK01415 113 YIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAW-------VQQ---------NQE 167 (247)
T ss_pred ccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHH-------Hhh---------hhh
Confidence 699999999995 578999999999999999999999 8997765431110 000 001
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcC
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaG 396 (557)
.+++++|++||.+|.||..++..|+++||++||.|+||+.+|....
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 3578999999999999999999999999999999999999998744
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.58 E-value=4.7e-15 Score=130.37 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 008681 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG 364 (557)
....+||+|+++||..+|||||+ |+|+.++......+ . .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~--------------~------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATA--------------V------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHh--------------C------CCCCCeEEEEeCCC
Confidence 35689999999999999999999 99987664332211 1 13678999999999
Q ss_pred hhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.||..++..|+++||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999986 99999975
No 48
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.56 E-value=9.9e-15 Score=147.91 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=82.5
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHH
Q 008681 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~Ea~elLa~d-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alG 344 (557)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.....++ ...+
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l-------~~~~---- 170 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEAL-------AAHR---- 170 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHH-------Hhhh----
Confidence 469999999988652 34899999999999999999999 99987765422211 1100
Q ss_pred HhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
. ..++++|++||.+|.|+..++..|++.||++||.|+||+.+|.+
T Consensus 171 ----~-~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 171 ----A-DLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred ----h-hcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 0 12689999999999999999999999999999999999999987
No 49
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.55 E-value=1.1e-14 Score=128.79 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 008681 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG 364 (557)
..-+|||+|+++||+.+|||||+ |+|+.++..... .++ .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~--------------~l~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIA--------------TAV------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHH--------------hcC------CCCCCeEEEEeCCC
Confidence 45679999999999999999999 999765543221 122 13678999999999
Q ss_pred hhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.||..+++.|.++||+++++ .||+.+|..
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999964
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.52 E-value=3.2e-14 Score=147.99 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=83.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhc
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk 349 (557)
..++++++.+++. +++++|||||++.||..||||||+ |+|+..+...... +.+ .++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~-------l~~---~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPW-------VEE---NLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHH-------HHH---hcC-----
Confidence 3699999999995 567999999999999999999999 9998776432111 111 111
Q ss_pred ccCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
..++++||+||.+|.|+..++..|+.+||++|+.|+||+.+|..
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 23789999999999999999999999999999999999999976
No 51
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.52 E-value=3.6e-15 Score=158.16 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=115.2
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHHHHHHH-
Q 008681 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWW- 263 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~--~~pVv~~~v~~g~~a~l~~~~~l~- 263 (557)
++|++|++|+..+ .+..|.. +| |++|..+..+ ++++.|.++-++|+.+ ...++.+- +....+..+-|..
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~-~g-vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~~d---~~~~~~~~~~~~~~ 255 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCAT-AG-VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLSYD---ALTATTRSFRVGAD 255 (370)
T ss_pred CCCcHhhCCCCCccccCCCCcc-CC-cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEE---CCCCEEEEEEecCC
Confidence 5799999987532 2334533 56 8999999999 6888999999888743 24454321 1111100000000
Q ss_pred -------HhC-CC-CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCC---cCcccccccccccCcccccchhhhhhc
Q 008681 264 -------TYG-GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKLLR 331 (557)
Q Consensus 264 -------~~~-g~-~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIP---GAi~a~~~~~~nIPl~eL~~~l~~Llk 331 (557)
.+. .| ...++++++.+++.+ ++++|||||++.||+.+||| ||+ |+|+.++......
T Consensus 256 ~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~--- 323 (370)
T PRK05600 256 PARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADI--- 323 (370)
T ss_pred CCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhh---
Confidence 000 01 125899999999954 46799999999999999999 588 9998877532100
Q ss_pred CchhhhHHHHHHHHhhhcccCCCCEEEEEeCCChhHHHHHHHHHHhcCCC-eEEecccHH
Q 008681 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (557)
Q Consensus 332 ~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L~~lGykn-VyvLdGG~~ 390 (557)
.. . +...+++ +|||||++|.||..++..|+++||++ |++|+||+.
T Consensus 324 ----~~----~-----l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 324 ----LH----A-----LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ----hh----h-----ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 00 0 0112344 99999999999999999999999996 999999975
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.43 E-value=4.8e-13 Score=140.93 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccch--hhhh---------------hcCchh
Q 008681 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKL---------------LRGGRE 335 (557)
Q Consensus 273 Sp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~--l~~L---------------lk~~e~ 335 (557)
...++.+++. ++.+|||||+|.||..||||||+ |+|+.+...+ .+.+ +.. ..
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~~ 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-GN 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-hh
Confidence 4566777663 47899999999999999999999 9998543211 1111 111 11
Q ss_pred hhHHHHHHHHhhhccc-CCCCEEEEEe-CCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccc
Q 008681 336 LDDTLTAAVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 336 L~~lL~alGI~~Lk~~-~kd~~VIVyC-~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~ 401 (557)
+...+... +... .++++||+|| ++|.||..+++.|..+|| ++++|+||+.+|++.+++...
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 12111111 0111 2688999999 578999999999999999 599999999999998875554
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.43 E-value=6.3e-13 Score=120.24 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=75.6
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhh--------hhhcCchhhhHHHH
Q 008681 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK--------KLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~Ea~elLa~d-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~--------~Llk~~e~L~~lL~ 341 (557)
.|+|+++.+++..+ ++.+|||+|++.+|..+|||||+ ++|+..+..+.. .++..++..+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRD---- 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHH----
Confidence 48999999999654 57999999999999999999999 888765321100 0111111111
Q ss_pred HHHHhhhcccCCCCEEEEEeCCChh---------HHHHHHHHHH--hcCCCeEEecccHHHHHHcCCc
Q 008681 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~R---------S~~AA~~L~~--lGyknVyvLdGG~~aWkaaGLP 398 (557)
.+. . .++++||+||.++.+ +..+++.|.. .|+.+|++|+||+.+|+. .+|
T Consensus 69 ~l~-----~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~-~~p 129 (132)
T cd01446 69 RLR-----R-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS-EFP 129 (132)
T ss_pred HHh-----c-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh-hCc
Confidence 111 1 157899999998865 4555556665 366899999999999976 444
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.39 E-value=1e-12 Score=136.77 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=73.4
Q ss_pred CcEEEEeCChhhHhhCCCCcCcccccccccccCcccccch--hhhhhcCc--------------hhhhHHHHHHHHhhhc
Q 008681 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG--------------RELDDTLTAAVIRNLK 349 (557)
Q Consensus 286 ~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~--l~~Llk~~--------------e~L~~lL~alGI~~Lk 349 (557)
..+|||||+|.||..||||||+ |+|+.....+ .+...+.. ..+...+.++- +
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~----~ 69 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWR----A 69 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHH----h
Confidence 4689999999999999999999 9998543221 11111100 01111111110 1
Q ss_pred ccCCCCEEEEEe-CCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcCCccccc
Q 008681 350 IVQDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (557)
Q Consensus 350 ~~~kd~~VIVyC-~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~ 402 (557)
..+++.+||+|| ++|.||..+++.|+.+|| ++++|+||+.+|+..+++....
T Consensus 70 ~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 70 FADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred hcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 123455699999 578999999999999999 6999999999999999877653
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.03 E-value=6.9e-10 Score=113.41 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=95.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeC---------ChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHH
Q 008681 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVR---------s~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~ 341 (557)
-++++.+.+++.+ ++.+|||.. ...||..-|||||. +++...+-+. ....+.+++.++.+++-.+
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~~--s~~~~~~lp~~e~Fa~y~~ 79 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISYP--SSPYRHMLPTAEHFAEYAS 79 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeeccccccC--CCcccccCccHHHHHHHHH
Confidence 4778888888854 679999983 35678888999997 3332222111 1234456666677788888
Q ss_pred HHHHhhhcccCCCCEEEEEeC--CCh-hHHHHHHHHHHhcCCCeEEecccHHHHHHcCCcccccCcc
Q 008681 342 AAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~--sG~-RS~~AA~~L~~lGyknVyvLdGG~~aWkaaGLPV~~~~~~ 405 (557)
.+|+. +++.+|||++ .|+ .|.+++|+++..|+.+|++|+||+..|+..|+|+...+.+
T Consensus 80 ~lGi~------n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~ 140 (286)
T KOG1529|consen 80 RLGVD------NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE 140 (286)
T ss_pred hcCCC------CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence 88884 7889999999 787 7899999999999999999999999999999999886643
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.99 E-value=6.4e-10 Score=121.97 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=65.2
Q ss_pred HHHHHHhCCCCcEEEEeCChhhHhhCCCCc----CcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhccc
Q 008681 276 STLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 276 Ea~elLa~d~~avLIDVRs~~Ef~~GHIPG----Ai~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~ 351 (557)
+..+.+ .++++|||||+++||+.+|||| |+ |+|+.++..... ..
T Consensus 399 ~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~----------------------~l 446 (482)
T PRK01269 399 ETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFG----------------------DL 446 (482)
T ss_pred HHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHh----------------------hc
Confidence 344444 3578999999999999999999 88 999876643211 12
Q ss_pred CCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecc
Q 008681 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQG 387 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdG 387 (557)
++++++|+||++|.||..+|..|+.+||+||++|.+
T Consensus 447 ~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 447 DQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 478899999999999999999999999999998864
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.96 E-value=1.9e-09 Score=110.17 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=81.3
Q ss_pred CCcEEEEeCChhhHh-----------hCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCC
Q 008681 285 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~-----------~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~k 353 (557)
.+...+|.|...+|. .||||||+ |+|+.++-..-+.+.+ +++++..+...|+. .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k~-~edl~~~f~~~~l~------~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIKP-AEDLKHLFAQKGLK------L 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccCC-HHHHHHHHHhcCcc------c
Confidence 468999999999994 57999999 9999988765554444 78888888888874 6
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 354 d~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
++|+|+-|..|..+...+-.|.+.| .++.+|+|+|.+|.-
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 789999999999974
No 58
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.81 E-value=4.2e-09 Score=108.34 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=79.8
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
-|+|+++.+++ .+++.++||+|..-||.-||-.||+ +.+...|.....+. ++.. .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v-------~~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWV-------EENL---------D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHH-------HHHH---------H
Confidence 48999999999 4788999999999999999999999 66655554332211 1111 0
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.-++++|+.||.+|.|-..+...|...||++||.|+||+-.+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 12677999999999999999999999999999999999987754
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=2.5e-07 Score=96.56 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=73.1
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHH
Q 008681 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~Ea~elLa~d-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alG 344 (557)
..|+|+.++.++++. ...+|||+|-|-||..|||+||+ |++..+..... +.... +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~---f~~~~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDF---FLLKD---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhh---hcccc---------c
Confidence 479999999999642 13679999999999999999999 88755433221 10000 0
Q ss_pred HhhhcccCCCCEEEEEeCCC-hhHHHHHHHHHH------------hcCCCeEEecccHHHHHHc
Q 008681 345 IRNLKIVQDRSKVIVMDADG-TRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~sG-~RS~~AA~~L~~------------lGyknVyvLdGG~~aWkaa 395 (557)
. +...+...+||||..- .|...+|..|+. +-|.++|+|+||+..|-..
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0 0001345789999754 499999999984 3456899999999999763
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.00068 Score=71.03 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHhCC-----CCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHH
Q 008681 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~al 343 (557)
..+|+++.++.++++. -+.+|||.|-+-||..|||-+|+ ||.-.. .+. .++
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~----------~~F--- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLG----------LLF--- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHH----------HHH---
Confidence 3579999999998642 24679999999999999999998 764221 111 111
Q ss_pred HHhhhcccCCCCEEEEEeCC-ChhHHHHHHHHHHhc------------CCCeEEecccHHHHHH
Q 008681 344 VIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLG------------VMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~Lk~~~kd~~VIVyC~s-G~RS~~AA~~L~~lG------------yknVyvLdGG~~aWka 394 (557)
+. |....-.-+||+|.. .+|+...|..|+.+- |..||+|+||+...-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 10 101124578999975 569999999886432 4589999999987654
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.08 E-value=0.15 Score=47.06 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=58.6
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCc------ccccccccccCcccccchhhhhhcCchhhhHHHHHH
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi------~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~al 343 (557)
+.++++++..+.+ ..=-.+||.|+..|.... |... ......+.++|+..- .. +++.+....+.+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~~--~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTAG--DI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCCC--CC-----CHHHHHHHHHHH
Confidence 5789999988653 233579999998774422 2210 011234456664421 10 112222211111
Q ss_pred HHhhhcccCCCCEEEEEeCCChhHHHHHHHH-HHhcCCCeEEecccHHHHHHcCCcccc
Q 008681 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 344 GI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~L-~~lGyknVyvLdGG~~aWkaaGLPV~~ 401 (557)
. ..+.||++||++|.|+..+|.++ ...|...--+ +..=++.|+.+..
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 24689999999999987766543 3445432111 1223556665553
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=94.02 E-value=0.079 Score=55.49 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccch--hhhhhcC-ch-------------hh-hH
Q 008681 276 STLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRG-GR-------------EL-DD 338 (557)
Q Consensus 276 Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~--l~~Llk~-~e-------------~L-~~ 338 (557)
+...++. .+..|||||.|.||..||.|+++ |.|.-.-+.. .+.-.+. .. .+ ..
T Consensus 7 ~~~~~~~--~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~ 76 (334)
T COG2603 7 DYRALLL--ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQ 76 (334)
T ss_pred HHHHHHh--cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHH
Confidence 3344443 36789999999999999999998 7764321111 1110100 00 00 11
Q ss_pred HHHHHHHhhhcccCCCCEEEEEeCC-ChhHHHHHHHH-HHhcCCCeEEecccHHHHH
Q 008681 339 TLTAAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 339 lL~alGI~~Lk~~~kd~~VIVyC~s-G~RS~~AA~~L-~~lGyknVyvLdGG~~aWk 393 (557)
++.+.. ....+.|+-++|.. |.||...+..| ...|++ .--+.||..+.+
T Consensus 77 ~l~ask-----~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 77 RLEASK-----AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHHH-----HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 111111 11245677777865 55999999999 777875 444669987654
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.79 E-value=0.11 Score=46.97 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=40.5
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcC------cccccccccccCcccccchhhhhhcCchhhhHHHHH
Q 008681 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGA------i~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~a 342 (557)
.+.++++++.++.+. .=-.||+.|+..|- .+-|.. ....-..|.++|+..-.- +++.++.....
T Consensus 12 s~Q~~~~d~~~la~~-GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-------~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQ-GFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDGGAI-------TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHHC-T--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----TTT---------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC-CCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCCCCC-------CHHHHHHHHHH
Confidence 367999999988753 23579999987653 223321 112223455777553110 11222222111
Q ss_pred HHHhhhcccCCCCEEEEEeCCChhHHHHHHH
Q 008681 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~ 373 (557)
+. ...+||.+||++|.|+...|.+
T Consensus 82 l~-------~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 LE-------SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HH-------TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HH-------hCCCCEEEECCCChhHHHHHHH
Confidence 11 1356999999999999655443
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=88.54 E-value=1.7 Score=40.93 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCC---CCcCcccccccccccCcccccch--------------------
Q 008681 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPEVGGS-------------------- 325 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GH---IPGAi~a~~~~~~nIPl~eL~~~-------------------- 325 (557)
...+++++...+.+ -.=-.+||.|++.|..... ++|. ++.++|+..-...
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~g~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLIDGV------QYVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----TT-------EEEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcCCc------eeeeecccccccccccccccccccccchhhHHH
Confidence 35688998877763 3335799999999987642 3333 2224442211110
Q ss_pred --hhhhhcC-chhhhHHHHHHHHhhhcccCCCCEEEEEeCCCh-hHHHHHH-HHHHhcCC
Q 008681 326 --VKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIAR-SLRKLGVM 380 (557)
Q Consensus 326 --l~~Llk~-~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RS~~AA~-~L~~lGyk 380 (557)
...++.. .+.+.++|..+- +...+++|||..|. |+..++. .|..+|..
T Consensus 100 ~~Y~~~~~~~~~~~~~~~~~l~-------~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 100 EFYREMLESYAEAYRKIFELLA-------DAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHH--------TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-------cCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 0111111 233333333221 12369999999998 7766554 45777875
No 65
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=88.39 E-value=0.064 Score=45.78 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=32.5
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCc
Q 008681 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~ 237 (557)
+|||||++|+..+....|.+ .| |++|+-+..+ +.++.|.++-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~-~G-Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAE-AG-VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSST-S--B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccc-cc-cccchHHHHH-HHHHHHHHHHHHhc
Confidence 69999999999666667777 68 8999999988 68888888888875
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.17 E-value=0.2 Score=56.63 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcc
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~ 350 (557)
+|+++++..+ +...++|.|...||.++|+++++ |+|+..-++...++.. +. ++..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l~------~~~~--- 677 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----LP------GIVC--- 677 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----ch------HhHH---
Confidence 4666665554 35679999999999999999999 9998743333333221 11 1110
Q ss_pred cCCCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHH
Q 008681 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQS 391 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~a 391 (557)
.....++++.....-+......+..+-+.+..++.+|++.
T Consensus 678 -~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 678 -SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred -hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 1345555554444445455555555557777788888873
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=84.75 E-value=0.11 Score=54.77 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=40.2
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccchhhhhh
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~l~~Ll 330 (557)
.--+|+++.+.+.+ ....+|+|.+..|..+||||++ ++|...+....+++.
T Consensus 14 ~i~~~~~~~~~l~~--~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 14 PIEDPEAFRDEHLA--LCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cCCCHHHHHHHHHH--HHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 33467888888753 5789999999999999999999 899866666655544
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=82.38 E-value=2.6 Score=37.65 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.4
Q ss_pred CCCEEEEEeCCCh-hHHHH--HHHHHHhcC
Q 008681 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~A--A~~L~~lGy 379 (557)
.+.+|+|||..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997 88644 334444443
No 69
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=81.06 E-value=3.6 Score=33.35 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=29.4
Q ss_pred hhhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008681 428 QFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFK 476 (557)
Q Consensus 428 ~llG~~~Gl~~~~~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~ 476 (557)
+++|.++.+.+. .....+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~-~~~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGL-LGLFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHH-HhcccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 455555433322 2222222455 89999998888 999999988876
No 70
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=80.79 E-value=3.9 Score=35.88 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHh
Q 008681 446 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLL 482 (557)
Q Consensus 446 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~ 482 (557)
...+++++|+.=.+.+.++.++..++|++|.+.++.+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~ 84 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSL 84 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHH
Confidence 4677899999999999999999999999999999865
No 71
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=78.31 E-value=5.2 Score=39.08 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred EEEeCChhhHhhCCCCcCcc---cccccccccCcccccchhhhhhcCchhhhHHHHHHHHhhhcccCCCCEEEEEeCCCh
Q 008681 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (557)
Q Consensus 289 LIDVRs~~Ef~~GHIPGAi~---a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI~~Lk~~~kd~~VIVyC~sG~ 365 (557)
+|=.-+..|..+-++|+-.. ..-..|.++|+.+.... +.+...+++..+.. . +..+++|++||..|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~~-~---L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELAA-R---LENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHHH-H---HHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHHH-H---HHcCCEEEEECCCCC
Confidence 44467777887777776421 22245667787654322 11122222222221 1 236889999999987
Q ss_pred -hHHH-HHHHHHHhc
Q 008681 366 -RSKG-IARSLRKLG 378 (557)
Q Consensus 366 -RS~~-AA~~L~~lG 378 (557)
|+.. +|..|.++|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 8866 555566666
No 72
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.54 E-value=0.45 Score=50.71 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=69.3
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHH-----------
Q 008681 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSAT----------- 255 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~--~~pVv~~~v~~g~~a~----------- 255 (557)
++|++|+.++..+.-..|.+ +| |+.|..+... ++++.|.++-++|... ...++.+..+......
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~-~g-v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDT-AG-IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCcc-CC-cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 58999998876553334544 56 7899888877 6788888887777532 2233322111110000
Q ss_pred --H-------HHHHH------HHHh-------CCCCCccCHHHHHHHHhC-----CCCcEEEEeCChhhHhhCCCCcCc
Q 008681 256 --L-------WIFYW------WWTY-------GGYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 256 --l-------~~~~~------l~~~-------~g~~g~ISp~Ea~elLa~-----d~~avLIDVRs~~Ef~~GHIPGAi 307 (557)
+ +.-+- .+-. .+....++++++.++++. +.+..|||+|++. |+-.|+|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 0 00000 0000 011236899999988832 3578999999999 9999999775
No 73
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=75.03 E-value=4.5 Score=37.46 Aligned_cols=71 Identities=13% Similarity=-0.026 Sum_probs=38.2
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeeehhhh-hhHHHHHHHHHHHHHhCC
Q 008681 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVF-LGTSATLWIFYWWWTYGG 267 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~~~pVv~~~v~-~g~~a~l~~~~~l~~~~g 267 (557)
||++.....++.+.++. .+....+... ...++.+...+|++++++||+|.-. .+...+. -+||.+++.|
T Consensus 53 GHIPgAv~~~~~~~~~~----~~~~~~~~p~-----~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~-r~~~~l~~~G 122 (138)
T cd01445 53 GHIPGASFFDFEECLDE----AGFEESMEPS-----EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTAC-HIALAARLCG 122 (138)
T ss_pred CcCCCCEeeCHHHhhCc----CCCCCCCCCC-----HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHH-HHHHHHHHcC
Confidence 89998887776654322 1211111111 2235666677899999999864321 0111111 2567777766
Q ss_pred CC
Q 008681 268 YS 269 (557)
Q Consensus 268 ~~ 269 (557)
+.
T Consensus 123 ~~ 124 (138)
T cd01445 123 HP 124 (138)
T ss_pred CC
Confidence 63
No 74
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=71.60 E-value=3.6 Score=43.11 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=54.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCcccccccccccCcccccch--------hhhhhcCchhhhHHHHHH
Q 008681 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--------VKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 272 ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl~eL~~~--------l~~Llk~~e~L~~lL~al 343 (557)
++.+++.+.+. .++.+++|.|+ +..||.+|+ ++-++.+..+ ++.++++......
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~----- 67 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR----- 67 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc-----
Confidence 56667777774 45799999999 557888887 4433322110 1111221111100
Q ss_pred HHhhhcccCCCCEEEEEeCCCh------h-HH---HHHHHHHHhcCCCeEEecccHHHHHH
Q 008681 344 VIRNLKIVQDRSKVIVMDADGT------R-SK---GIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~Lk~~~kd~~VIVyC~sG~------R-S~---~AA~~L~~lGyknVyvLdGG~~aWka 394 (557)
.+.--+..++|.|+.+.. . .. ..-+.++..|+ .+|.|.|||..++.
T Consensus 68 ----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 ----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000012367899987621 0 11 12244567787 48999999976654
No 75
>PLN02777 photosystem I P subunit (PSI-P)
Probab=68.92 E-value=6.7 Score=38.16 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008681 447 EKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLL 483 (557)
Q Consensus 447 ~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~ 483 (557)
..+||++|+.=.|++.++.|++.++|++|+++++.+-
T Consensus 124 P~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk 160 (167)
T PLN02777 124 PGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTY 160 (167)
T ss_pred cchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998764
No 76
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=62.75 E-value=13 Score=33.42 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=20.6
Q ss_pred CCCCEEEEEeCCCh-hHHH--HHHHHHHhcCC
Q 008681 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (557)
Q Consensus 352 ~kd~~VIVyC~sG~-RS~~--AA~~L~~lGyk 380 (557)
..+.+|+|||..|. ||.. +++.+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 36789999999997 8765 34455566653
No 77
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=62.20 E-value=8.4 Score=34.98 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEeCCCh-hHHHHHHHHHHh----cCCCeEEecccHHHH
Q 008681 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RS~~AA~~L~~l----GyknVyvLdGG~~aW 392 (557)
|+|+|.+.. ||..|...|+.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998765 999988888888 777899999998866
No 78
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=58.41 E-value=29 Score=36.84 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhHhh---CCCC
Q 008681 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (557)
Q Consensus 271 ~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~---GHIP 304 (557)
.+...++.+.+.+ .++.+||+|+..+|+. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 3567788888854 5789999999999997 8888
No 79
>PLN02806 complex I subunit
Probab=57.63 E-value=13 Score=32.24 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.7
Q ss_pred hhhhhhhhhhhhHH---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008681 427 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 487 (557)
Q Consensus 427 l~llG~~~Gl~~~~---------~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~~p~~ 487 (557)
..++|+++||..-+ |.-.||+..+ +.|+|..|.+.+-.+| ..+.+|+-+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35678888866543 4467999998 7899999998888876 467888876665554
No 80
>PLN02727 NAD kinase
Probab=52.31 E-value=24 Score=42.79 Aligned_cols=83 Identities=8% Similarity=0.141 Sum_probs=45.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCc----CcccccccccccCcccccchhhhhhcCchhhhHHHHHHHH
Q 008681 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 270 g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPG----Ai~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~alGI 345 (557)
+.++++++..+.++ .=-.||+.|+..|- .+..+- +.......+.++|+...... .++.+++....+.-
T Consensus 267 gQpspe~la~LA~~-GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~ap------t~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLEK-GFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAP------SAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHHC-CCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCC------CHHHHHHHHHHHHh
Confidence 57999999887643 22469999998772 222211 11112234457776432211 12333332221100
Q ss_pred hhhcccCCCCEEEEEeCCChh
Q 008681 346 RNLKIVQDRSKVIVMDADGTR 366 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~sG~R 366 (557)
...+||++||++|.|
T Consensus 339 ------slpkPVLvHCKSGar 353 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVW 353 (986)
T ss_pred ------hcCCCEEEECCCCCc
Confidence 146899999999993
No 81
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=52.18 E-value=2.4 Score=39.56 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhh
Q 008681 86 NESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSR 128 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (557)
.+.|...+....+.+...++.+...+.+.+...+..++..+..
T Consensus 40 ~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 82 (202)
T PF01442_consen 40 SERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTSE 82 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 82
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=51.50 E-value=18 Score=34.08 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCEEEEEe-C----CChhHHHHHHHHHHhcCCCeEEecccHHHH
Q 008681 353 DRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 353 kd~~VIVyC-~----sG~RS~~AA~~L~~lGyknVyvLdGG~~aW 392 (557)
++.+++++| . .|+.-...+..|+++|..++..||||-...
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 454665555 4 367778899999999999999999997643
No 83
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=51.44 E-value=26 Score=31.15 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=19.8
Q ss_pred CCCEEEEEeCCCh-hHHHH--HHHHHHhcCC
Q 008681 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGVM 380 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~A--A~~L~~lGyk 380 (557)
++.+|+|||..|. ||..+ +.++...|.+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 6789999999998 77553 3344556653
No 84
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.17 E-value=86 Score=35.79 Aligned_cols=106 Identities=24% Similarity=0.374 Sum_probs=63.8
Q ss_pred hhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhccccccCcCCCCccccc---
Q 008681 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (557)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--- 148 (557)
+..+..++-++..|+--++..--+ |.=|.+.||++|.-+ |.|++.+ +-| .++-.+|-. ++.|.++-+||
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~--eiA-~~LcEsV~a--~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAA--EIA-EKLCESVAA--SLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhH--HHH-HHHHHHHHH--HhhhcccccchHHH
Confidence 445556777777777644433333 445777788877643 3344322 111 223333322 56777777775
Q ss_pred hhhHHHhhhc------cchhhhhhhhhHHhhhhhhccCcceEEEeec
Q 008681 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG 189 (557)
Q Consensus 149 ~~l~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG 189 (557)
+..|+|...+ +..+||.||.-+.+=+ +.+|||+-.-|
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~----~krPYVi~fvG 385 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARR----RKRPYVISFVG 385 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh----cCCCeEEEEEe
Confidence 4555555443 7799999996665544 45999988877
No 85
>PRK08223 hypothetical protein; Validated
Probab=47.96 E-value=9.9 Score=40.02 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=11.8
Q ss_pred eEEEeecccCCCCCcc
Q 008681 183 FVVYYYGTTKESLPPE 198 (557)
Q Consensus 183 ~~~~~yG~~~~~lpp~ 198 (557)
++++..||||+|++|.
T Consensus 160 ~v~~p~~p~~~~~f~~ 175 (287)
T PRK08223 160 LVFDPGGMSFDDYFDL 175 (287)
T ss_pred EEEcCCCCchhhhcCC
Confidence 3444468999999876
No 86
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=47.73 E-value=20 Score=32.59 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.2
Q ss_pred EEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHH
Q 008681 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aW 392 (557)
|+|+|.... ||..+...|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578997665 999999999887755688888888877
No 87
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=47.06 E-value=61 Score=36.56 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=19.4
Q ss_pred cEEEEeCChhhHhhCCCCcCc
Q 008681 287 AVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 287 avLIDVRs~~Ef~~GHIPGAi 307 (557)
..+||.|+.++|..||+-.|.
T Consensus 327 FFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEeccchhhcccccchhhh
Confidence 679999999999999998886
No 88
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=37.74 E-value=49 Score=28.62 Aligned_cols=49 Identities=6% Similarity=0.199 Sum_probs=27.9
Q ss_pred chhhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhh
Q 008681 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKST 118 (557)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (557)
.|..+..+++++...+.+.....+.++.+-+++.++.++..+.++...+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665665555555555555544443333
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=37.41 E-value=41 Score=36.24 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.9
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHhcCCCeEEecccHHHHHHcC
Q 008681 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 353 kd~~VIVyC~sG~RS~~AA~~L~~lGyknVyvLdGG~~aWkaaG 396 (557)
++++|+++ ..|.....++..|...|+.++.++++..-.+.+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 45667666 55667778999999999999999999977766544
No 90
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.81 E-value=64 Score=30.81 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCCEEEEEeCCCh---hHHHHHHHHHHhcCCCeEE--eccc----------HHHHHHcCCccccc
Q 008681 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQGG----------FQSWVKEGLRIKEL 402 (557)
Q Consensus 352 ~kd~~VIVyC~sG~---RS~~AA~~L~~lGyknVyv--LdGG----------~~aWkaaGLPV~~~ 402 (557)
++..+|+++|..|+ ..-.+|+.|...|++ |.+ +... +..+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 46789999999887 567788999999996 555 3221 33556667666553
No 91
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=34.32 E-value=66 Score=29.11 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHH
Q 008681 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (557)
Q Consensus 356 ~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~ 390 (557)
+|+|+|.... ||..|...|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899997655 9998888888887666777777654
No 92
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=33.99 E-value=62 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=28.0
Q ss_pred CEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHH
Q 008681 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aW 392 (557)
++|+|+|.... ||..+...|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999997654 99988888887653 466777777665
No 93
>PRK10126 tyrosine phosphatase; Provisional
Probab=33.76 E-value=52 Score=30.68 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.3
Q ss_pred CEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHHH
Q 008681 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~aW 392 (557)
.+|+|+|.... ||..|...|+.++- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999997665 99999888888764 466777777555
No 94
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=32.13 E-value=2.2e+02 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.3
Q ss_pred CCCCEEEEEeCCCh-hHHHH
Q 008681 352 QDRSKVIVMDADGT-RSKGI 370 (557)
Q Consensus 352 ~kd~~VIVyC~sG~-RS~~A 370 (557)
.++.+|+|||..|. ||...
T Consensus 96 ~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 35889999999997 77653
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=31.23 E-value=1.2e+02 Score=31.83 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCCChhHHHHHHHHHHhcCCCeE
Q 008681 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RS~~AA~~L~~lGyknVy 383 (557)
.++..+++||+.-.+.......|++.||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 47899999999999999999999999997644
No 96
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=30.43 E-value=47 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.7
Q ss_pred EEEEEeCCCh-hHHHHHHHHHHhcCC-CeEEecccHHHH
Q 008681 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (557)
Q Consensus 356 ~VIVyC~sG~-RS~~AA~~L~~lGyk-nVyvLdGG~~aW 392 (557)
+|+|+|.+.. ||..+...++++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899997665 999888888877654 688888887554
No 97
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.28 E-value=1e+02 Score=29.01 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhHhhCCCCcCc------ccccccccccCcccccchhhhhhcCchhhhHHHHH
Q 008681 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISp~Ea~elLa~d~~avLIDVRs~~Ef~~GHIPGAi------~a~~~~~~nIPl~eL~~~l~~Llk~~e~L~~lL~a 342 (557)
.+.++++++.++.+. .=..+|--|+..|= -.=|+.- ..+-..+.+||...-.- ..+.++..-++
T Consensus 13 sgQi~~~D~~~iaa~-GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~i-------T~~dV~~f~~A 82 (130)
T COG3453 13 SGQISPADIASIAAL-GFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGI-------TEADVEAFQRA 82 (130)
T ss_pred cCCCCHHHHHHHHHh-ccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCC-------CHHHHHHHHHH
Confidence 468999999888743 22458888985543 2223221 11112234566442110 01122221111
Q ss_pred HHHhhhcccCCCCEEEEEeCCChhHHHHHHH
Q 008681 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~Lk~~~kd~~VIVyC~sG~RS~~AA~~ 373 (557)
+. ..+.||+-||++|.||...+..
T Consensus 83 l~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 83 LD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HH-------HhCCCEEeeecCCchHHHHHHH
Confidence 21 2567999999999999766543
No 98
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=27.19 E-value=40 Score=29.60 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=33.3
Q ss_pred hhccCcce-------EEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeee
Q 008681 176 SMTNGASF-------VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVP 245 (557)
Q Consensus 176 ~~~~~~~~-------~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~~~pVv~ 245 (557)
.+.|.|+- -.|..||++..+.....+.........+. .. ....++......+++.+.+|++
T Consensus 17 ~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~vv~ 84 (122)
T cd01448 17 RILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHM--------LP-SPEEFAELLGSLGISNDDTVVV 84 (122)
T ss_pred EEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCC--------CC-CHHHHHHHHHHcCCCCCCEEEE
Confidence 46666665 55667888877665555433321111221 11 1223444455568899999985
No 99
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=26.75 E-value=75 Score=27.45 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhccc
Q 008681 78 FDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID 134 (557)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 134 (557)
+.++.+.+.+-+.+..+.+.+.+.+.-+++...+.++-..+.+..+.+..+.....+
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 63 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333344444443333333333
No 100
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=25.93 E-value=70 Score=30.90 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCCh-hHHH--HHHHHHHhcC
Q 008681 353 DRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~--AA~~L~~lGy 379 (557)
+..+|+++|..|. ||.. +|+.|...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 5669999999987 7754 3455555444
No 101
>PRK13530 arsenate reductase; Provisional
Probab=25.77 E-value=1.1e+02 Score=28.16 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.3
Q ss_pred CEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccH
Q 008681 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (557)
Q Consensus 355 ~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~ 389 (557)
++|+|+|.+.. ||..+...++.++-+++.+...|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 57999997655 998888888776545677777775
No 102
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=25.67 E-value=98 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCEEEEEeCCCh---hHHHHHHHHHHhcCCCeEEe
Q 008681 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VIVyC~sG~---RS~~AA~~L~~lGyknVyvL 385 (557)
.++|+++|..|+ ..-.+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 368999998765 777899999999995 6555
No 103
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=24.14 E-value=95 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCCh-hHHHHHHHHHHh-cCCCeEEecccHHHHHH
Q 008681 353 DRSKVIVMDADGT-RSKGIARSLRKL-GVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~AA~~L~~l-GyknVyvLdGG~~aWka 394 (557)
.+.||+++|.+|. |+..+.-.||+. |+ .+..=+.+++.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W----~~~~i~~Ey~~ 129 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGW----SLSSIFDEYRR 129 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCC----CHHHHHHHHHH
Confidence 5689999999997 888888888764 33 24444556655
No 104
>PRK12361 hypothetical protein; Provisional
Probab=23.94 E-value=1.1e+02 Score=34.49 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=14.1
Q ss_pred CCCEEEEEeCCCh-hHHH
Q 008681 353 DRSKVIVMDADGT-RSKG 369 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~ 369 (557)
.+.+|+|||..|. ||..
T Consensus 174 ~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 174 ANKSVVVHCALGRGRSVL 191 (547)
T ss_pred CCCeEEEECCCCCCcHHH
Confidence 5689999999997 7755
No 105
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.70 E-value=1.4e+02 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCCEEEEEeCCCh-hHHH-HHHHHHHhcC
Q 008681 353 DRSKVIVMDADGT-RSKG-IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RS~~-AA~~L~~lGy 379 (557)
.+.+|+|+|..|. |+.. +|..|.+.|+
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6779999999987 7755 4444545554
No 106
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=23.61 E-value=1.3e+02 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=32.4
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhCCC
Q 008681 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGY 268 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~~~~pVv~~~v~~g~~a~l~~~~~l~~~~g~ 268 (557)
||++.++.....+.... .+ .... ...++.+...+++++++++|++.-- |..+ ...+|.++..||
T Consensus 40 ghIpgA~~~p~~~~~~~----~~-------~~~~--~~~~~~~~~~~~~~~~~~iv~yc~~-g~~s--~~~~~~l~~~G~ 103 (118)
T cd01449 40 GHIPGAVNIPWTSLLDE----DG-------TFKS--PEELRALFAALGITPDKPVIVYCGS-GVTA--CVLLLALELLGY 103 (118)
T ss_pred CcCCCCcccChHHhcCC----CC-------CcCC--HHHHHHHHHHcCCCCCCCEEEECCc-HHHH--HHHHHHHHHcCC
Confidence 88888776655543321 11 1111 2234455555788889999853211 2111 114555566665
No 107
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.21 E-value=1.3e+02 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=21.0
Q ss_pred hhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhcccc
Q 008681 96 GENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ 135 (557)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 135 (557)
+-+-|-+.|..+.+++++.+|.+++-+|.++..+...++.
T Consensus 35 ~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~e 74 (155)
T PF07464_consen 35 QSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEE 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Confidence 3333344455566666666666666666665544444444
No 108
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=23.13 E-value=1.1e+02 Score=28.71 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=29.1
Q ss_pred CEEEEEeCCCh-hHHHHHHHHHHhcCCCeEEecccHHH
Q 008681 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQS 391 (557)
Q Consensus 355 ~~VIVyC~sG~-RS~~AA~~L~~lGyknVyvLdGG~~a 391 (557)
.+|+|+|.+.. ||..|-..++.+.-.++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 47999997654 99988888887765788988888543
No 109
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.30 E-value=2.4e+02 Score=27.05 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=36.6
Q ss_pred cccCCCCEEEEEeCCCh--hHHHHHHHHHH---hcCCCeEEecccHHHH----H-HcCCcccccCccchhhhhh
Q 008681 349 KIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW----V-KEGLRIKELKSETALTILN 412 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~--RS~~AA~~L~~---lGyknVyvLdGG~~aW----k-aaGLPV~~~~~~~alei~~ 412 (557)
+..+++..+|+.|..|. .|...|..|.. .|..++..+-||-.++ + ++...+.-.+-..|-++.+
T Consensus 62 ~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~lar 135 (155)
T PF02590_consen 62 KKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLAR 135 (155)
T ss_dssp CTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHH
T ss_pred hhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHH
Confidence 34457888999999887 78888888865 6787899999986543 3 2344444434444555433
No 110
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.82 E-value=1.1e+02 Score=26.71 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCEEEEEeCCChhHHHHHHHH----HHhcCCCeEEecccHHHH
Q 008681 354 RSKVIVMDADGTRSKGIARSL----RKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 354 d~~VIVyC~sG~RS~~AA~~L----~~lGyknVyvLdGG~~aW 392 (557)
.++|++.|.+|..|...+..+ ++.|++ +.+-..++..-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 468999999999877777665 456664 55555665544
No 111
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.32 E-value=1.6e+02 Score=30.06 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=62.6
Q ss_pred hhhhccccccCcCCCCccccchhhHHHhhhccchhhhhhhhhHHhhhhhhccCcceEEEeecccCCCCCccHHHHHhHhh
Q 008681 128 RVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYE 207 (557)
Q Consensus 128 ~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~a~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lpp~i~~~l~~~e 207 (557)
++.+.|-...+.|=++=..|-.+|++-++--.+..+||.+ -+..-.+ -+.|.|++.+++-.
T Consensus 41 G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~--------~v~~~k~-----------~lT~Gi~eLv~~L~ 101 (227)
T KOG1615|consen 41 GVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQ--------FVIKQKP-----------TLTPGIRELVSRLH 101 (227)
T ss_pred CchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHH--------HHhcCCC-----------ccCCCHHHHHHHHH
Confidence 4444444444455455557888899888877777777766 2332333 68899999999988
Q ss_pred hhccceeeeccchHHHHHHHHHHHHHhcCcC
Q 008681 208 DRAVKLWRPVGSALQQVSVAIEGLERSLGFD 238 (557)
Q Consensus 208 ~~ag~Vl~~~G~~~~q~~~alE~l~~~lG~~ 238 (557)
.+.-.|....||.-+ .++-++..||++
T Consensus 102 ~~~~~v~liSGGF~~----~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 102 ARGTQVYLISGGFRQ----LIEPVAEQLGIP 128 (227)
T ss_pred HcCCeEEEEcCChHH----HHHHHHHHhCCc
Confidence 878888888999865 567777778866
No 112
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.25 E-value=1.3e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEeCCChhHHHHH-HH----HHHhcCCCeEEeccc
Q 008681 356 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 388 (557)
Q Consensus 356 ~VIVyC~sG~RS~~AA-~~----L~~lGyknVyvLdGG 388 (557)
+|++.|.+|..+...+ .. +.+.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999998555544 54 4667764 4444443
No 113
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.11 E-value=1.7e+02 Score=29.53 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCEEEEEeCCCh---hHHHHHHHHHHhcCCCeEEe
Q 008681 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VIVyC~sG~---RS~~AA~~L~~lGyknVyvL 385 (557)
..+|+++|..|+ ....+|+.|...|++ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 568999998776 667899999999975 5443
Done!