Query 008682
Match_columns 557
No_of_seqs 376 out of 1666
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 4.6E-44 1E-48 341.3 21.4 169 74-245 9-185 (186)
2 PRK04143 hypothetical protein; 100.0 3.2E-41 7E-46 337.8 20.6 169 81-250 81-261 (264)
3 cd02905 Macro_GDAP2_like Macro 100.0 4.9E-41 1.1E-45 308.5 17.1 138 84-221 2-140 (140)
4 cd02908 Macro_Appr_pase_like M 100.0 3.8E-40 8.3E-45 311.5 20.5 163 84-248 1-164 (165)
5 cd02907 Macro_Af1521_BAL_like 100.0 6.3E-40 1.4E-44 312.9 21.5 170 82-251 1-175 (175)
6 PRK00431 RNase III inhibitor; 100.0 5.1E-38 1.1E-42 300.4 20.3 168 81-250 1-173 (177)
7 cd02906 Macro_1 Macro domain, 100.0 2.9E-36 6.3E-41 279.4 15.6 135 84-218 1-147 (147)
8 COG2110 Predicted phosphatase 100.0 4.5E-35 9.8E-40 276.8 17.4 166 83-251 3-175 (179)
9 cd02903 Macro_BAL_like Macro d 100.0 7.2E-35 1.6E-39 267.3 16.8 134 83-220 1-137 (137)
10 KOG2633 Hismacro and SEC14 dom 100.0 3.8E-34 8.2E-39 271.4 15.0 180 69-257 19-199 (200)
11 cd03330 Macro_2 Macro domain, 100.0 1E-30 2.2E-35 238.5 16.4 130 85-217 2-132 (133)
12 cd02900 Macro_Appr_pase Macro 99.9 2.6E-26 5.7E-31 219.7 16.0 137 84-221 30-186 (186)
13 PF13716 CRAL_TRIO_2: Divergen 99.9 3.4E-27 7.4E-32 218.7 9.0 140 396-537 2-149 (149)
14 cd02749 Macro Macro domain, a 99.9 1.5E-25 3.3E-30 207.1 16.0 134 84-217 1-146 (147)
15 smart00506 A1pp Appr-1"-p proc 99.9 1.4E-25 3E-30 203.6 15.3 128 85-213 2-133 (133)
16 PRK13341 recombination factor 99.9 2.6E-27 5.7E-32 268.1 -1.3 175 75-253 467-707 (725)
17 KOG4406 CDC42 Rho GTPase-activ 99.9 6.3E-25 1.4E-29 225.3 13.0 170 388-557 70-247 (467)
18 PF01661 Macro: Macro domain; 99.9 1.8E-24 3.8E-29 192.0 11.5 113 101-213 1-118 (118)
19 cd02901 Macro_Poa1p_like Macro 99.8 3E-19 6.5E-24 164.2 12.6 133 84-219 1-139 (140)
20 KOG1470 Phosphatidylinositol t 99.8 1.9E-18 4.2E-23 176.0 13.6 132 393-525 95-235 (324)
21 smart00516 SEC14 Domain in hom 99.8 1.9E-18 4.1E-23 160.5 11.9 123 402-525 14-149 (158)
22 cd00170 SEC14 Sec14p-like lipi 99.7 1.1E-17 2.5E-22 153.3 11.0 132 396-527 9-152 (157)
23 PF00650 CRAL_TRIO: CRAL/TRIO 99.6 6.9E-16 1.5E-20 143.4 6.6 136 391-526 2-153 (159)
24 PHA02595 tk.4 hypothetical pro 99.4 3.9E-12 8.5E-17 119.0 14.4 130 84-216 2-140 (154)
25 KOG1471 Phosphatidylinositol t 99.1 3.8E-10 8.3E-15 117.4 9.4 129 398-526 97-250 (317)
26 PF14519 Macro_2: Macro-like d 98.4 8.3E-07 1.8E-11 89.3 9.8 140 83-223 42-216 (280)
27 cd03331 Macro_Poa1p_like_SNF2 98.0 0.00013 2.7E-09 68.3 14.1 129 85-215 2-147 (152)
28 KOG1826 Ras GTPase activating 97.7 2.2E-05 4.8E-10 93.5 3.0 162 378-540 1541-1710(2724)
29 TIGR02452 conserved hypothetic 97.1 0.0028 6.1E-08 64.4 9.8 157 82-239 55-255 (266)
30 PF10154 DUF2362: Uncharacteri 95.8 0.059 1.3E-06 59.5 10.7 119 135-253 372-503 (510)
31 COG4295 Uncharacterized protei 95.3 0.11 2.3E-06 50.7 9.1 82 168-250 197-280 (285)
32 KOG1826 Ras GTPase activating 36.4 79 0.0017 40.5 6.7 124 360-486 1668-1802(2724)
33 PF01073 3Beta_HSD: 3-beta hyd 33.9 87 0.0019 32.0 5.9 46 150-195 67-114 (280)
34 PF07872 DUF1659: Protein of u 29.6 89 0.0019 23.2 3.8 22 394-415 7-28 (47)
35 PHA00684 hypothetical protein 27.3 1.5E+02 0.0032 26.9 5.3 46 170-215 55-100 (128)
36 KOG1502 Flavonol reductase/cin 26.6 1.2E+02 0.0026 32.1 5.5 46 150-195 79-127 (327)
37 PLN02778 3,5-epimerase/4-reduc 25.8 1.2E+02 0.0026 31.2 5.3 46 149-194 57-108 (298)
38 cd06155 eu_AANH_C_1 A group of 23.3 2E+02 0.0043 24.5 5.4 49 205-253 23-74 (101)
39 PLN02214 cinnamoyl-CoA reducta 22.0 1.9E+02 0.004 30.3 6.0 44 150-195 82-125 (342)
40 PLN02725 GDP-4-keto-6-deoxyman 22.0 1.6E+02 0.0034 29.7 5.3 46 149-194 49-98 (306)
41 PRK15181 Vi polysaccharide bio 20.9 1.3E+02 0.0029 31.4 4.6 53 150-203 91-146 (348)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=4.6e-44 Score=341.30 Aligned_cols=169 Identities=22% Similarity=0.373 Sum_probs=156.2
Q ss_pred CcccccCCCCEEEEEEcCc--cceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEcccC
Q 008682 74 RFPVDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAY 146 (557)
Q Consensus 74 ~f~~~~~~n~~I~i~~GDI--t~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~----~~~~~G~~~vT~~~ 146 (557)
-.......|.+|.||+||| |++++|||||+||++|.++|| ++||+++||++|++||+++ ++|++|++++|+||
T Consensus 9 ~~~~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~ 88 (186)
T cd02904 9 LSTKSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAH 88 (186)
T ss_pred ccchhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCC
Confidence 3345566889999999999 999999999999999998876 6999999999999999865 79999999999999
Q ss_pred CCCCCeEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-
Q 008682 147 DLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK- 225 (557)
Q Consensus 147 ~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~- 225 (557)
+||||||||||||.|+.+ ..++.|++||++||++|++++++|||||+||||++|||++++|++|+++|++|+++++
T Consensus 89 ~Lp~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~ 165 (186)
T cd02904 89 GLPAKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMS 165 (186)
T ss_pred CCCCCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999664 2468999999999999999999999999999999999999999999999999999874
Q ss_pred CCccEEEEEecChhhHHHHH
Q 008682 226 DKISAVVFCTTTASDTEIYK 245 (557)
Q Consensus 226 ~~i~~V~~v~~~~~~~~~y~ 245 (557)
+++++|+||+++++++++|.
T Consensus 166 ~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 166 SSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCccEEEEEECCHHHHHHhh
Confidence 67999999999999999985
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=337.81 Aligned_cols=169 Identities=41% Similarity=0.648 Sum_probs=155.0
Q ss_pred CCCEEEEEEcCccceecCEEEEcCCcCCCCC-----Cc-hHHHHHhhChhHHHHHHHh-----CCCCCCCEEEcccCCCC
Q 008682 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL-----GGCRTGMAKVTNAYDLP 149 (557)
Q Consensus 81 ~n~~I~i~~GDIt~~~vDaIVNsaN~~l~~~-----~g-~~aI~~aaG~~l~~e~~~~-----~~~~~G~~~vT~~~~L~ 149 (557)
.|.+|.||+||||++++|||||+||+.|.++ || +++|+++||++|++||+++ ..+++|++++|+||+||
T Consensus 81 ~~~~i~i~~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp 160 (264)
T PRK04143 81 KYDNIFLWQGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP 160 (264)
T ss_pred CCCEEEEEECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCC
Confidence 4789999999999999999999999999743 33 6899999999999999876 36899999999999999
Q ss_pred CCeEEEEcCCCCCC-cchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 008682 150 ARRVIHTVGPKYAV-KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 228 (557)
Q Consensus 150 ~k~IIH~VgP~~~~-~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i 228 (557)
|+||||||||.|+. .......+.|++||++||++|.+++++|||||+||||++|||++.||++|++++++|++++++.
T Consensus 161 ~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~- 239 (264)
T PRK04143 161 AKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK- 239 (264)
T ss_pred CCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 99999999999987 3444567899999999999999999999999999999999999999999999999999998765
Q ss_pred cEEEEEecChhhHHHHHHHccc
Q 008682 229 SAVVFCTTTASDTEIYKRLLPL 250 (557)
Q Consensus 229 ~~V~~v~~~~~~~~~y~~~l~~ 250 (557)
.+|+|++++++++++|+++|..
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~ 261 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNK 261 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH
Confidence 6899999999999999998864
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=4.9e-41 Score=308.46 Aligned_cols=138 Identities=61% Similarity=0.948 Sum_probs=133.5
Q ss_pred EEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEcccCCCCCCeEEEEcCCCCC
Q 008682 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (557)
Q Consensus 84 ~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (557)
+|.||+|||+++++|||||++|++|.+++| +++|+++||++|++||++++++++|++++|+||+||||||||+|||+|+
T Consensus 2 ki~l~~GdIt~~~vDaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~k~VIH~vgP~~~ 81 (140)
T cd02905 2 RIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPARFIIHTVGPKYN 81 (140)
T ss_pred eEEEEeCccCcccCCEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCccEEEEecCCccC
Confidence 689999999999999999999999987766 6999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 008682 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (557)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl 221 (557)
.++.+++++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++||
T Consensus 82 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 82 VKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 98888888999999999999999999999999999999999999999999999999995
No 4
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=3.8e-40 Score=311.54 Aligned_cols=163 Identities=45% Similarity=0.725 Sum_probs=154.5
Q ss_pred EEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEcccCCCCCCeEEEEcCCCCC
Q 008682 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (557)
Q Consensus 84 ~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (557)
+|.|++|||+++++|||||++|++|.++|| +++|+++||++|++||++++++++|++++|++|+|+|+||||+|||+|+
T Consensus 1 ~i~i~~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~~~IiH~v~P~~~ 80 (165)
T cd02908 1 KIEIIQGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWR 80 (165)
T ss_pred CeEEEecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCCCEEEEEcCCccc
Confidence 589999999999999999999999998876 6999999999999999999999999999999999999999999999998
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHH
Q 008682 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (557)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~~~~~~~~ 242 (557)
.+ .....+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|+++ .+++++|+||++++++++
T Consensus 81 ~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~-~~~l~~V~~v~~~~~~~~ 158 (165)
T cd02908 81 GG-QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE-HDAIERVIFVCFSEEDYE 158 (165)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCHHHHH
Confidence 76 3446789999999999999999999999999999999999999999999999999988 567999999999999999
Q ss_pred HHHHHc
Q 008682 243 IYKRLL 248 (557)
Q Consensus 243 ~y~~~l 248 (557)
+|++.|
T Consensus 159 ~f~~~l 164 (165)
T cd02908 159 IYEKAL 164 (165)
T ss_pred HHHHHh
Confidence 999876
No 5
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=6.3e-40 Score=312.93 Aligned_cols=170 Identities=26% Similarity=0.426 Sum_probs=160.4
Q ss_pred CCEEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEcccCCCCCCeEEEE
Q 008682 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (557)
Q Consensus 82 n~~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~ 156 (557)
|.+|+||+|||+++++|||||++|+++.+++| +++|+++||++|++||+++ +++++|++++|++|+|+||+|||+
T Consensus 1 ~~~i~i~~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~k~IiH~ 80 (175)
T cd02907 1 GVTLSVIKGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCKYVIHA 80 (175)
T ss_pred CcEEEEEECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEe
Confidence 57899999999999999999999999998776 6999999999999999764 899999999999999999999999
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 008682 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (557)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~~ 236 (557)
|+|.|+.+......+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++++++.+++|+||++
T Consensus 81 v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 81 VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 99999987666678899999999999999999999999999999999999999999999999999998778999999999
Q ss_pred ChhhHHHHHHHcccc
Q 008682 237 TASDTEIYKRLLPLY 251 (557)
Q Consensus 237 ~~~~~~~y~~~l~~y 251 (557)
++.++++|++.|..|
T Consensus 161 ~~~~~~~~~~al~~~ 175 (175)
T cd02907 161 DEQTVEAFEKALEVF 175 (175)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999988654
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=5.1e-38 Score=300.35 Aligned_cols=168 Identities=39% Similarity=0.593 Sum_probs=157.0
Q ss_pred CCCEEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEcccCCCCCCeEEE
Q 008682 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIH 155 (557)
Q Consensus 81 ~n~~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH 155 (557)
++.+|.|++|||+++++|||||++|+++.++|| +++|++++|+++++||+++ +++++|++++|++|+|+|+||||
T Consensus 1 ~~~~i~i~~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~~~IiH 80 (177)
T PRK00431 1 MGMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIH 80 (177)
T ss_pred CCcEEEEEeCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCCCEEEE
Confidence 367999999999999999999999999998776 6999999999999999987 89999999999999999999999
Q ss_pred EcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 008682 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (557)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~ 235 (557)
+|||.|+.+... +.+.|++||++||+.|++++++|||||+||||++|||++.+|++|++++++|+++. +.+++|+||+
T Consensus 81 ~v~P~~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~-~~l~~I~~v~ 158 (177)
T PRK00431 81 TVGPVWRGGEDN-EAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRH-KSPEEVYFVC 158 (177)
T ss_pred ecCCeecCCCCc-HHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcC-CCcCEEEEEE
Confidence 999999876554 57899999999999999999999999999999999999999999999999998654 5799999999
Q ss_pred cChhhHHHHHHHccc
Q 008682 236 TTASDTEIYKRLLPL 250 (557)
Q Consensus 236 ~~~~~~~~y~~~l~~ 250 (557)
++++++++|++.|..
T Consensus 159 ~~~~~~~~f~~~l~~ 173 (177)
T PRK00431 159 YDEEAYRLYERLLTQ 173 (177)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999864
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=2.9e-36 Score=279.40 Aligned_cols=135 Identities=44% Similarity=0.722 Sum_probs=124.3
Q ss_pred EEEEEEcCccceecCEEEEcCCcCCCCC-----Cc-hHHHHHhhChhHHHHHHHh----C-CCCCCCEEEcccCCCCCCe
Q 008682 84 KIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL----G-GCRTGMAKVTNAYDLPARR 152 (557)
Q Consensus 84 ~I~i~~GDIt~~~vDaIVNsaN~~l~~~-----~g-~~aI~~aaG~~l~~e~~~~----~-~~~~G~~~vT~~~~L~~k~ 152 (557)
+|+||+|||+++++|||||+||++|.++ || +++|+++||++|++||+++ + .+++|++++|++|+|+|+|
T Consensus 1 ~i~v~~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~k~ 80 (147)
T cd02906 1 SIYLWKGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPAKY 80 (147)
T ss_pred CeEEEECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCE
Confidence 5889999999999999999999999743 44 6899999999999999875 3 6899999999999999999
Q ss_pred EEEEcCCCCCCcch-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHH
Q 008682 153 VIHTVGPKYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (557)
Q Consensus 153 IIH~VgP~~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~ 218 (557)
|||+|||+|..++. ....+.|++||++||++|.+++++|||||+||||++|||++++|++|+++||
T Consensus 81 VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 81 VIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred EEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999988764 3457899999999999999999999999999999999999999999999985
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=4.5e-35 Score=276.83 Aligned_cols=166 Identities=35% Similarity=0.544 Sum_probs=152.6
Q ss_pred CEEEEEEcCccceecCEEEEcCCcCCCCCCch-HHHHHhhChhHHHHHHHhC------CCCCCCEEEcccCCCCCCeEEE
Q 008682 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLG------GCRTGMAKVTNAYDLPARRVIH 155 (557)
Q Consensus 83 ~~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g~-~aI~~aaG~~l~~e~~~~~------~~~~G~~~vT~~~~L~~k~IIH 155 (557)
..|.+++||||++++|||||+||+.|.+|||+ .+|++++|++|++||+++. ++++|++++|++|+|+++||||
T Consensus 3 ~~i~~v~GDIt~~~~daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH 82 (179)
T COG2110 3 TNIRVVQGDITKLEADAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIH 82 (179)
T ss_pred ceEEEEecccceeehhheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEe
Confidence 57999999999999999999999999998875 8999999999999998753 3667999999999999999999
Q ss_pred EcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 008682 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (557)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~ 235 (557)
+|||.|..+.. ...+.|..||+++|++|++++++|||||+||||++|||++++|.++++++++|+.. ..+..|+|++
T Consensus 83 ~vgp~~~~g~~-~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~--~~~~~v~~v~ 159 (179)
T COG2110 83 TVGPSWRGGSK-DEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE--ASIETVIFVV 159 (179)
T ss_pred cCCCcccCCCh-hHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc--ccccEEEEEe
Confidence 99999988744 34579999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred cChhhHHHHHHHcccc
Q 008682 236 TTASDTEIYKRLLPLY 251 (557)
Q Consensus 236 ~~~~~~~~y~~~l~~y 251 (557)
+++++...|+.++...
T Consensus 160 ~~~e~~~~~~~~~~~~ 175 (179)
T COG2110 160 YGEETARVYEELLSTH 175 (179)
T ss_pred cCchhHHHHHHHHhhh
Confidence 9999999999987654
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=7.2e-35 Score=267.29 Aligned_cols=134 Identities=27% Similarity=0.332 Sum_probs=125.3
Q ss_pred CEEEEEEcCccceecCEEEEcCCcC-CCCCCc-hHHHHHhhChhHHHHHHHhCCCCC-CCEEEcccCCCCCCeEEEEcCC
Q 008682 83 SKIYLWRGNPWNLEVDTVVNSTNEN-LDEAHS-SPGLHAAAGPGLAEECATLGGCRT-GMAKVTNAYDLPARRVIHTVGP 159 (557)
Q Consensus 83 ~~I~i~~GDIt~~~vDaIVNsaN~~-l~~~~g-~~aI~~aaG~~l~~e~~~~~~~~~-G~~~vT~~~~L~~k~IIH~VgP 159 (557)
.+|+|++|||+++++|||||++|++ +.++|| +++|++++|+++++||++++.++. |++++|++|+|+||||||+++|
T Consensus 1 ~~i~i~~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p 80 (137)
T cd02903 1 LTLQVAKGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLP 80 (137)
T ss_pred CEEEEEeCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCC
Confidence 3689999999999999999999999 666555 689999999999999999988885 9999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHH
Q 008682 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRF 220 (557)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~f 220 (557)
+|..+ ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 81 ~~~~~----~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 81 NWSNG----ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCCc----hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 99765 4678999999999999999999999999999999999999999999999986
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.8e-34 Score=271.45 Aligned_cols=180 Identities=44% Similarity=0.665 Sum_probs=162.6
Q ss_pred CCCCCCcccccCCCCEEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEcccCC
Q 008682 69 NGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYD 147 (557)
Q Consensus 69 ~~~~~~f~~~~~~n~~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~~~~~~G~~~vT~~~~ 147 (557)
...-++|+++...|.+|.+|+||++.+++|||| |..|++ ..+|+++|||++..||..+..|++|.+++|+|++
T Consensus 19 ~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~ 92 (200)
T KOG2633|consen 19 ITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVV------LLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG 92 (200)
T ss_pred ccccchhhccCccccCeeEeecccccccceeee------eccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence 345688999999999999999999999999998 555555 6999999999999999999899999999999999
Q ss_pred CCCCeEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 008682 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDK 227 (557)
Q Consensus 148 L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~ 227 (557)
||||+|||+|||+|...+.++.. .|+.||++||.+|.+++++|||||+|++|++|||.+.||++.++++++|++++.+.
T Consensus 93 Lpak~vIHtvgP~~~~d~~~~~~-~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~ 171 (200)
T KOG2633|consen 93 LPAKRVIHTVGPRWKEDKLQECY-FLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDS 171 (200)
T ss_pred CceeEEEEecCchhhccchHHHH-HHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999998888766 89999999999999999999999999999999999999999999999999998754
Q ss_pred ccEEEEEecChhhHHHHHHHccccCCCChh
Q 008682 228 ISAVVFCTTTASDTEIYKRLLPLYFPRDKH 257 (557)
Q Consensus 228 i~~V~~v~~~~~~~~~y~~~l~~yfpr~~~ 257 (557)
. +++|.+.+.+.+.|..+++.|||++..
T Consensus 172 ~--l~~~~f~~~d~e~~~~~l~~~~~~~~~ 199 (200)
T KOG2633|consen 172 S--LKTVPFLDYDSESYGAYLPEYAPSDAK 199 (200)
T ss_pred e--EEEEEEeccCCchHHHHHhhhcccccc
Confidence 3 444555566778889999999998754
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.97 E-value=1e-30 Score=238.49 Aligned_cols=130 Identities=25% Similarity=0.371 Sum_probs=122.2
Q ss_pred EEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEcccCCCCCCeEEEEcCCCCCC
Q 008682 85 IYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAV 163 (557)
Q Consensus 85 I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~ 163 (557)
|++++|||+++++|||||++|+.+.+++| +++|++++|+++++||.+.+++++|++++|++++|+||||||+++|.+..
T Consensus 2 i~i~~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~k~Iih~~~~~~~~ 81 (133)
T cd03330 2 LEVVQGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPARYVIHAATMEEPG 81 (133)
T ss_pred EEEEEcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCCCEEEEeCCCCCCC
Confidence 78999999999999999999999998876 69999999999999999999999999999999999999999999998754
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHH
Q 008682 164 KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTV 217 (557)
Q Consensus 164 ~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai 217 (557)
. ...+.|++||++||+.|.+++++|||||+||||++|||++++|++|.++|
T Consensus 82 ~---~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 82 R---SSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred C---CHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 2 34578999999999999999999999999999999999999999999986
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.94 E-value=2.6e-26 Score=219.71 Aligned_cols=137 Identities=15% Similarity=0.069 Sum_probs=116.3
Q ss_pred EEEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhC-hhHHHHHHH------hCCCCCCCEEEcccCCCC------
Q 008682 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG-PGLAEECAT------LGGCRTGMAKVTNAYDLP------ 149 (557)
Q Consensus 84 ~I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG-~~l~~e~~~------~~~~~~G~~~vT~~~~L~------ 149 (557)
.|..+.+|++..++|||||+||+.+.+||| ..+|++++| ++|+++|++ .+.|++|++++|.+++|+
T Consensus 30 ~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~ 109 (186)
T cd02900 30 TIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIY 109 (186)
T ss_pred ecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccc
Confidence 334444444445589999999999999887 589999999 689999865 279999999999999999
Q ss_pred ----CCeEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHHHc--CCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 008682 150 ----ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIEN--GLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (557)
Q Consensus 150 ----~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~--~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl 221 (557)
++||||++++++..... ...+.|++||+++|++|.++ +++|||||+||||.+|||++++|++|+.+++.|+
T Consensus 110 ~~~~~~~iIHaPtm~~P~~~~-~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 110 CRWGIPYLIHAPTMRVPSPVI-TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred cccCCCEEEEcCcccCCCCCC-CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998866652221 23468999999999999987 8999999999999999999999999999999984
No 13
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.94 E-value=3.4e-27 Score=218.74 Aligned_cols=140 Identities=38% Similarity=0.682 Sum_probs=110.1
Q ss_pred cceEecccCCCCCeEEEEEeeeccCCCCCHHHHHHHHHHHc-ccccCCCEEEEEEcCCCCcCCCCcHHHHHHHHHHHhHH
Q 008682 396 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEF-EPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 474 (557)
Q Consensus 396 ~i~y~~G~Dk~GRPVvvv~~~~~~~~~~d~e~ll~yvi~~L-d~~~~~~y~iV~d~t~~s~~n~p~~~~Lk~~~~~l~~~ 474 (557)
.++|.+|+|++||||+++.++++ +...|++++++|+++++ +.+..++|+||||+++++..+.|+++|++++++++|..
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46799999999999999999998 66679999999999999 78889999999999999999999999999999999999
Q ss_pred HhccccEEEEECCChhHHHHH-HhhccccCCc----eEEEeCChhHHhhcCCCCCC--CCChHHHHhhhh
Q 008682 475 HQRNLHAIYVLHPTFHLKATI-FTLQLLVDNV----KVVYVDRLLQLFRYVPREQL--TIPDFVFQHDLE 537 (557)
Q Consensus 475 y~knLk~iyIvhps~~~k~~~-~~l~pfis~k----KI~~v~sl~eL~~~I~~~qL--~iP~~v~~~D~~ 537 (557)
+++||+++||+||+|++|.++ .+.+++.+.+ ||+|++++++|.++|+++|| .|| .|++||+|
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 999999999999999999999 6667877765 99999999999999999999 999 99999986
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.93 E-value=1.5e-25 Score=207.10 Aligned_cols=134 Identities=34% Similarity=0.480 Sum_probs=124.1
Q ss_pred EEEEEEcCccc-eecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCC---CCCCCEEEcccCCCC-CCeEEEEc
Q 008682 84 KIYLWRGNPWN-LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGG---CRTGMAKVTNAYDLP-ARRVIHTV 157 (557)
Q Consensus 84 ~I~i~~GDIt~-~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~~~---~~~G~~~vT~~~~L~-~k~IIH~V 157 (557)
+|++++|||++ .++|+|||++|+.+.+++| +.+|++++|+++++||++... +++|++++|++++++ ++||||++
T Consensus 1 ~i~~~~GDi~~~~~~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vih~~ 80 (147)
T cd02749 1 KIKVVSGDITKPLGSDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIV 80 (147)
T ss_pred CEEEEECCCCCCCCCCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEEEeC
Confidence 47899999999 9999999999999887776 689999999999999988643 589999999999999 99999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCC------ChHHHHHHHHHHH
Q 008682 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY------PREPAAHVAIRTV 217 (557)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~------p~~~~A~i~l~ai 217 (557)
+|+|..++..++.+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 81 ~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 81 GPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 99998876556678999999999999999999999999999999999 9999999999886
No 15
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.93 E-value=1.4e-25 Score=203.58 Aligned_cols=128 Identities=32% Similarity=0.482 Sum_probs=116.8
Q ss_pred EEEEEcCccceecCEEEEcCCcCCCCCCc-hHHHHHhhChhH-HHHHHHhC--CCCCCCEEEcccCCCCCCeEEEEcCCC
Q 008682 85 IYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL-AEECATLG--GCRTGMAKVTNAYDLPARRVIHTVGPK 160 (557)
Q Consensus 85 I~i~~GDIt~~~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l-~~e~~~~~--~~~~G~~~vT~~~~L~~k~IIH~VgP~ 160 (557)
|++++|||+.+++|||||++|.++.+++| +++|++++|+++ ++++++.. .+++|++++|+++++++++|||+++|+
T Consensus 2 i~~~~Gdi~~~~~d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih~~~p~ 81 (133)
T smart00506 2 LKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGPR 81 (133)
T ss_pred eEEEeCCCCcccCCEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEEeCCCC
Confidence 78999999999999999999999998776 689999999996 66776543 799999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 008682 161 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (557)
Q Consensus 161 ~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~ 213 (557)
|..++ ..+.+.|++||++||+.|.+++++||+||+||||++|+|++++++++
T Consensus 82 ~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 82 ASGHS-NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCC-ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 98764 34678999999999999999999999999999999999999999864
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.92 E-value=2.6e-27 Score=268.06 Aligned_cols=175 Identities=22% Similarity=0.150 Sum_probs=158.6
Q ss_pred cccccCCCCEEEEEE----cCccceecCEEEEcCCcCCCCCCch-HHHHHhhChhH---HHHHHH---------------
Q 008682 75 FPVDHEINSKIYLWR----GNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGL---AEECAT--------------- 131 (557)
Q Consensus 75 f~~~~~~n~~I~i~~----GDIt~~~vDaIVNsaN~~l~~~~g~-~aI~~aaG~~l---~~e~~~--------------- 131 (557)
+......+.++.+++ ||||.+++|||||+||..|.+|+|+ ++|+++||+++ ++||++
T Consensus 467 ~r~~~~~~~~~~~~~~~~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~ 546 (725)
T PRK13341 467 QRQLGQEGERLAILRDRLWSDITWQRHDRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPV 546 (725)
T ss_pred HHHHhhcccHHHHHHHHHhccccccccceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCcc
Confidence 345556678899999 9999999999999999999988874 99999999999 888875
Q ss_pred ---------------------hCCCCCCCEEEc------------ccCCCCCCeEEEEcCCCCCCcchhhHHHHHHHHHH
Q 008682 132 ---------------------LGGCRTGMAKVT------------NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYR 178 (557)
Q Consensus 132 ---------------------~~~~~~G~~~vT------------~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~ 178 (557)
+|+|++|++++| +||+|+|+||||+|||.|..+.. ...|.+||+
T Consensus 547 ~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---~~~l~~~~~ 623 (725)
T PRK13341 547 LLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---DELLYKALY 623 (725)
T ss_pred ccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc---cchhHHHHH
Confidence 589999999999 99999999999999999977653 368999999
Q ss_pred HHHHHHHHcCCe----------eeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHHHHHHHc
Q 008682 179 SCLELLIENGLK----------SIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLL 248 (557)
Q Consensus 179 ~~L~~a~e~~~~----------SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~~~~~~~~~y~~~l 248 (557)
++|++|++++++ |||||+|+||++|||.+.++++++++|++|+..+++ ..+++++.+++.++..|++.+
T Consensus 624 ~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 702 (725)
T PRK13341 624 SALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPD-YRQALATNLEEERICNLDEEL 702 (725)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCc-HHHHHhccCCHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999988765 667789999999999999998
Q ss_pred cccCC
Q 008682 249 PLYFP 253 (557)
Q Consensus 249 ~~yfp 253 (557)
..+|-
T Consensus 703 ~~~~~ 707 (725)
T PRK13341 703 TRILG 707 (725)
T ss_pred HHHhh
Confidence 87763
No 17
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.92 E-value=6.3e-25 Score=225.35 Aligned_cols=170 Identities=28% Similarity=0.457 Sum_probs=154.8
Q ss_pred ChHHHhhc--cceEecc--cCCCCCeEEEEEeeeccC-CCCCHHHHHHHHHHHcccccCCCEEEEEEcCCCCcCCCCcHH
Q 008682 388 NLSEIAEM--KIVYRGG--VDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLG 462 (557)
Q Consensus 388 d~~~i~~~--~i~y~~G--~Dk~GRPVvvv~~~~~~~-~~~d~e~ll~yvi~~Ld~~~~~~y~iV~d~t~~s~~n~p~~~ 462 (557)
.|.++++. .++-..| +|++||+|++|.++++++ .++|--+++.|+++++|++++++|++||+|.|..+.|.|+++
T Consensus 70 ~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~ 149 (467)
T KOG4406|consen 70 PFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQ 149 (467)
T ss_pred cHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeehhcCCcccccchHH
Confidence 35555544 5554443 599999999999999987 467777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhccccEEEEECCChhHHHHHHhhccccCCc---eEEEeCChhHHhhcCCCCCCCCChHHHHhhhhhc
Q 008682 463 WMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVN 539 (557)
Q Consensus 463 ~Lk~~~~~l~~~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~~v~sl~eL~~~I~~~qL~iP~~v~~~D~~~~ 539 (557)
|+.+.|.-++++|++|||++|+|||+|+.|++|.+++||++.| ||+|+++++||+++|..++|.||..|++||..++
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~~D~~~~ 229 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVLKHDDKLL 229 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 008682 540 GGKGLIVDPRTKYVYQRP 557 (557)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~ 557 (557)
+..-.++.|+++..+.|+
T Consensus 230 s~~~~~a~~p~~~~~pr~ 247 (467)
T KOG4406|consen 230 SKAKTPAPPPEKMTPPRP 247 (467)
T ss_pred ccccCCCCCcccCCCCCC
Confidence 998888888887777764
No 18
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.91 E-value=1.8e-24 Score=192.03 Aligned_cols=113 Identities=35% Similarity=0.532 Sum_probs=106.7
Q ss_pred EEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEcccCCCCCCeEEEEcCCCCCCcchhhHHHHHHH
Q 008682 101 VNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSH 175 (557)
Q Consensus 101 VNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~ 175 (557)
||++|..+.+++| +++|++++|++++++|+++ +++++|++++|++++|++++|||+|+|.|.........+.|++
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~ 80 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALES 80 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHH
Confidence 8999999999877 6999999999999999876 6799999999999999999999999999987666677899999
Q ss_pred HHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 008682 176 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (557)
Q Consensus 176 ~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~ 213 (557)
||++||+.|.+++++||+||+||||++|+|++++|++|
T Consensus 81 ~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 81 AYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 19
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.80 E-value=3e-19 Score=164.19 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=110.9
Q ss_pred EEEEEEcCccce-ecCEEEEcCCcCCCCCCc-hHHHHHh---hChhHHHHHHHhCCCCCCC-EEEcccCCCCCCeEEEEc
Q 008682 84 KIYLWRGNPWNL-EVDTVVNSTNENLDEAHS-SPGLHAA---AGPGLAEECATLGGCRTGM-AKVTNAYDLPARRVIHTV 157 (557)
Q Consensus 84 ~I~i~~GDIt~~-~vDaIVNsaN~~l~~~~g-~~aI~~a---aG~~l~~e~~~~~~~~~G~-~~vT~~~~L~~k~IIH~V 157 (557)
.|.+++|||++. ++|+|||++|..+.+|+| +.+|.++ +..++++.|++.+. ..|+ ++++.++++++++|+|++
T Consensus 1 ~i~~v~GDi~~~~~~d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~I~~~~ 79 (140)
T cd02901 1 MITYVKGDLLHAPEAAALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKKEL-LLGGVAVLERGSSLVSRYIYNLP 79 (140)
T ss_pred CeEEEcCccccCCCCCEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhcCC-CCCcEEEEecCCCCCceEEEEee
Confidence 378999999999 999999999999998876 5788886 33356666766544 4555 455667888899999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 008682 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (557)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~ 219 (557)
+|.+.... ...+.|++|++++++.|.+++++||+||.||||++|+|.+++++++.+.+..
T Consensus 80 t~~~~~~~--~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 80 TKVHYGPK--SRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred ccCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 99876633 3457999999999999999999999999999999999999999998887653
No 20
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=175.99 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=121.2
Q ss_pred hhccceEecccCCCCCeEEEEEeeeccCCCCCHHHHHHHHHHHccccc------CCCEEEEEEcCCCCcCCCCcHHHHHH
Q 008682 393 AEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI------QKPYSIVYFHSAASLQLQPDLGWMRR 466 (557)
Q Consensus 393 ~~~~i~y~~G~Dk~GRPVvvv~~~~~~~~~~d~e~ll~yvi~~Ld~~~------~~~y~iV~d~t~~s~~n~p~~~~Lk~ 466 (557)
.+.|..|..|.|+.||||+|++++...++..+.+.+.++++.+||..+ ++.+++++|+++|+++| +++.+++.
T Consensus 95 ~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~~~k~ 173 (324)
T KOG1470|consen 95 LETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIKFLKE 173 (324)
T ss_pred hhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcHHHHH
Confidence 357999999999999999999999888888888888888888877553 56799999999999886 78999999
Q ss_pred HHHHHhHHHhccccEEEEECCChhHHHHHHhhccccCCc---eEEEeCChhHHhhcCCCCCC
Q 008682 467 LQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVVYVDRLLQLFRYVPREQL 525 (557)
Q Consensus 467 ~~~~l~~~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~~v~sl~eL~~~I~~~qL 525 (557)
++.+|+.+|+++|+.++|+||+|+|..+|++++||++++ ||+|+.+..+|.+||++++|
T Consensus 174 ~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l 235 (324)
T KOG1470|consen 174 LLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL 235 (324)
T ss_pred HHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence 999999999999999999999999999999999999988 99999999999999999984
No 21
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.77 E-value=1.9e-18 Score=160.52 Aligned_cols=123 Identities=24% Similarity=0.532 Sum_probs=113.6
Q ss_pred ccCCCCCeEEEEEeeeccCCCCCHHHHHHHHHHHcccccC--------CCEEEEEEcCCCCcCCCCcHHHHHHHHHHHhH
Q 008682 402 GVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ--------KPYSIVYFHSAASLQLQPDLGWMRRLQQVLGR 473 (557)
Q Consensus 402 G~Dk~GRPVvvv~~~~~~~~~~d~e~ll~yvi~~Ld~~~~--------~~y~iV~d~t~~s~~n~p~~~~Lk~~~~~l~~ 473 (557)
|.|++||||++++.+++++...+.+.++.+++..+|.... ..+++|+|+++++..+ ++++|+|++++.++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 7999999999999999988889999999999998876653 3589999999998865 889999999999999
Q ss_pred HHhccccEEEEECCChhHHHHHHhhccccCCc---eEEEeCC--hhHHhhcCCCCCC
Q 008682 474 KHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVVYVDR--LLQLFRYVPREQL 525 (557)
Q Consensus 474 ~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~~v~s--l~eL~~~I~~~qL 525 (557)
.|++||+.+|||||+++++++|+++++|++++ ||+++++ .++|.++|++++|
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 99999999999999999999999999999998 9999987 8999999998764
No 22
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.74 E-value=1.1e-17 Score=153.33 Aligned_cols=132 Identities=26% Similarity=0.488 Sum_probs=115.6
Q ss_pred cceEecccCCCCCeEEEEEeeecc-CCCCCHHHHHHHHHHHcccccC------CCEEEEEEcCCCCcCCCC-cHHHHHHH
Q 008682 396 KIVYRGGVDSEGRPVMVVVGAHFL-LRCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQLQP-DLGWMRRL 467 (557)
Q Consensus 396 ~i~y~~G~Dk~GRPVvvv~~~~~~-~~~~d~e~ll~yvi~~Ld~~~~------~~y~iV~d~t~~s~~n~p-~~~~Lk~~ 467 (557)
++.|.+|.|++||||++++.++.+ ....+.+.++.+++..+|..+. ..+++|+|+++++..+.. ...+++++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 666777789999999999988543 3456768899999988876654 368999999999876553 78899999
Q ss_pred HHHHhHHHhccccEEEEECCChhHHHHHHhhccccCCc---eEEEeCC-hhHHhhcCCCCCCCC
Q 008682 468 QQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVVYVDR-LLQLFRYVPREQLTI 527 (557)
Q Consensus 468 ~~~l~~~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~~v~s-l~eL~~~I~~~qL~i 527 (557)
++.++..|++||+.+||+||+++++.+|+++++|++++ ||+++++ .++|.++|++++|+.
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~ 152 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPE 152 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcH
Confidence 99999999999999999999999999999999999998 9999999 999999999998754
No 23
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.61 E-value=6.9e-16 Score=143.40 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=106.0
Q ss_pred HHhhccceEecccCCCCCeEEEEEeeeccCCCCCHHHHHHHHHHHccccc--------CCCEEEEEEcCCCCcCCCCc--
Q 008682 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI--------QKPYSIVYFHSAASLQLQPD-- 460 (557)
Q Consensus 391 ~i~~~~i~y~~G~Dk~GRPVvvv~~~~~~~~~~d~e~ll~yvi~~Ld~~~--------~~~y~iV~d~t~~s~~n~p~-- 460 (557)
++.+.+++|..|.|++||||+++..++++......+.++.+++..+|..+ ...+++|+|+++++..+.+.
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 46778999999999999999999999988877777777777777766543 24589999999998654332
Q ss_pred HHHHHHHHHHHhHHHhccccEEEEECCChhHHHHHHhhccccCCc---eEEEeCCh---hHHhhcCCCCCCC
Q 008682 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVVYVDRL---LQLFRYVPREQLT 526 (557)
Q Consensus 461 ~~~Lk~~~~~l~~~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~~v~sl---~eL~~~I~~~qL~ 526 (557)
.+.++.+.++++..|+++++.+||+|+|++++++|+++++|++++ ||+++.+. ++|.++|+.++|+
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP 153 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLP 153 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSB
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCc
Confidence 889999999999999999999999999999999999999999998 99999553 5799999988764
No 24
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.41 E-value=3.9e-12 Score=119.00 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=106.6
Q ss_pred EEEEEEcCccce---ecCEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh---CCCCCCCEEE-cccCCCCCCeEEE
Q 008682 84 KIYLWRGNPWNL---EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL---GGCRTGMAKV-TNAYDLPARRVIH 155 (557)
Q Consensus 84 ~I~i~~GDIt~~---~vDaIVNsaN~~l~~~~g-~~aI~~aaG~~l~~e~~~~---~~~~~G~~~v-T~~~~L~~k~IIH 155 (557)
.|.+++|||++. ..++|||++|....+|+| +.+|.++. |++.++.++. +..+.|++.+ |.+++.+.++|+|
T Consensus 2 ~i~~v~GDl~~~~~~~~~~i~h~~N~~g~mG~GIA~~~k~~~-P~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~~~I~n 80 (154)
T PHA02595 2 IVDYIKGDIVALFLQGKGNIAHGCNCFHTMGSGIAGQLAKAF-PQILEADKLTTEGDVEKLGTFSVWEKYVGGHKAYCFN 80 (154)
T ss_pred eEEEECCcccccccCCCceEEEeeCCCCcCChHHHHHHHHHc-ChHHHHHHHHhcCCccccceEEEEEeeccCCCEEEEE
Confidence 478899999877 556999999999998887 57776666 6777777654 4677899965 6667778899999
Q ss_pred EcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCC-eeeeecccccCCCCCChHHHHHHHHHH
Q 008682 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGL-KSIAMGCIYTEAKNYPREPAAHVAIRT 216 (557)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~-~SIAfP~I~tG~~g~p~~~~A~i~l~a 216 (557)
.++- |+.+.. .....|++|+++..+.+.++++ .|||||.||||++|.|.+.+..++.+.
T Consensus 81 l~tq-~~~~~~-~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 81 LYTQ-FDPGPN-LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred Eecc-CCCCCC-CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 9875 765543 2346799999999999999998 999999999999999999998887764
No 25
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.07 E-value=3.8e-10 Score=117.43 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=100.5
Q ss_pred eEecccCCCCCeEEEEEeeeccCCC----CCHHHHHHHHHHHccc--------------ccCCCEEEEEEcCCCCcCCC-
Q 008682 398 VYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEP--------------LIQKPYSIVYFHSAASLQLQ- 458 (557)
Q Consensus 398 ~y~~G~Dk~GRPVvvv~~~~~~~~~----~d~e~ll~yvi~~Ld~--------------~~~~~y~iV~d~t~~s~~n~- 458 (557)
.+..|+|+.|+||++-......... ......+.|.+.-++. ....-++.|+|+.|++..+.
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 4556999999999998877664432 2222233332222211 12345899999999987644
Q ss_pred -CcHHHHHHHHHHHhHHHhccccEEEEECCChhHHHHHHhhccccCCc---eEE-E-eCChhHHhhcCCCCCCC
Q 008682 459 -PDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNV---KVV-Y-VDRLLQLFRYVPREQLT 526 (557)
Q Consensus 459 -p~~~~Lk~~~~~l~~~y~knLk~iyIvhps~~~k~~~~~l~pfis~k---KI~-~-v~sl~eL~~~I~~~qL~ 526 (557)
+....++++...++.+|+++++++||||++++|.++|.+++||++++ ||+ + .++.++|.++|+++.|+
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP 250 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLP 250 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCc
Confidence 77889999999999999999999999999999999999999999998 999 3 36899999999998763
No 26
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.45 E-value=8.3e-07 Score=89.31 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=84.4
Q ss_pred CEEEEEEcCccce-------------ecCEEEEcCCcCCCCCCch-HHHHHhhChhHHH-HHHH-h--CCCCCCCEEEcc
Q 008682 83 SKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAE-ECAT-L--GGCRTGMAKVTN 144 (557)
Q Consensus 83 ~~I~i~~GDIt~~-------------~vDaIVNsaN~~l~~~~g~-~aI~~aaG~~l~~-e~~~-~--~~~~~G~~~vT~ 144 (557)
..+.++.|++..+ ..||||.|||+.--+|||- .+|.++-|.+-.+ -+++ + +-.++|.+-+..
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvId 121 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVID 121 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEE
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEE
Confidence 3488888887644 3789999999988888874 6888877654433 3443 2 235678777655
Q ss_pred c----------CCCCCCeEEEEcCCC------CCCcch-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChH
Q 008682 145 A----------YDLPARRVIHTVGPK------YAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207 (557)
Q Consensus 145 ~----------~~L~~k~IIH~VgP~------~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~ 207 (557)
- .+-.++||||+-+.. |..... ...-+.+.++++|+|..+. ..+.+|.+|.||||.+|.|++
T Consensus 122 L~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~ 200 (280)
T PF14519_consen 122 LPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPE 200 (280)
T ss_dssp GGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HH
T ss_pred CchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHH
Confidence 4 234578999986532 221110 1123567788999887664 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008682 208 PAAHVAIRTVRRFLEK 223 (557)
Q Consensus 208 ~~A~i~l~ai~~fl~~ 223 (557)
.+|+.|+-|++-|...
T Consensus 201 ~sAk~M~fAl~l~~l~ 216 (280)
T PF14519_consen 201 ISAKQMAFALRLYNLQ 216 (280)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999999754
No 27
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.03 E-value=0.00013 Score=68.26 Aligned_cols=129 Identities=10% Similarity=0.020 Sum_probs=93.9
Q ss_pred EEEEEcCccceecC-----EEEEcCCcCCCCC-Cc-hHHHHHhhChhHHHH---HHHhCCCCCCCEEEcccCC----CC-
Q 008682 85 IYLWRGNPWNLEVD-----TVVNSTNENLDEA-HS-SPGLHAAAGPGLAEE---CATLGGCRTGMAKVTNAYD----LP- 149 (557)
Q Consensus 85 I~i~~GDIt~~~vD-----aIVNsaN~~l~~~-~g-~~aI~~aaG~~l~~e---~~~~~~~~~G~~~vT~~~~----L~- 149 (557)
|+.++||++....+ +||+..|..-..| || +.+|.++. |+..+. |.+.+.+..|++.+.+-.. ..
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~~~~ 80 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGKMKDLHLGDLHLFPIDDKNSRLKG 80 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHhcCCCccccEEEEEeccccCCCCC
Confidence 78899999998655 9999999988766 44 57777655 544443 4445667789998876422 11
Q ss_pred CCeEEEEcCCCCCCc--chhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHH
Q 008682 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (557)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ 215 (557)
-.+|...++..+.++ ...-+...|+.|+..+-..|.+ +-.||.||-||+|.+|.+.+..-+++-+
T Consensus 81 ~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k 147 (152)
T cd03331 81 PDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRK 147 (152)
T ss_pred CeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 357888888876554 2234567888888888887765 4588999999999999999876555433
No 28
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=97.67 E-value=2.2e-05 Score=93.47 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=139.1
Q ss_pred HHHHHHh---cCCChHHHhhccceEecccCCCCCeEEEEEeeeccCCCCCHHHHHHHHHHHcccccCCCEEEEEEcCCCC
Q 008682 378 SRYLAKA---NSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAAS 454 (557)
Q Consensus 378 ~~~l~~a---~~~d~~~i~~~~i~y~~G~Dk~GRPVvvv~~~~~~~~~~d~e~ll~yvi~~Ld~~~~~~y~iV~d~t~~s 454 (557)
++.|++. +++.|.-+++.-++|+.| .+.|.|+++++.++.-.++.+-+.|++++..++.+..+-+|.++.|.|...
T Consensus 1541 E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~kp~~hf~~evreD~T~~~ 1619 (2724)
T KOG1826|consen 1541 ENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDDILIFLVELCLKPKVHFPGEVREDPTPIE 1619 (2724)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcHHHHHHHHHHcCccccCcceeeecCCcCC
Confidence 4555543 577888899999999999 999999999999988777888888999999999999999999999999887
Q ss_pred cCCCCcHHHHHH-HHHHHhHHHhccccEEEEECCChhHHHHH----HhhccccCCceEEEeCChhHHhhcCCCCCCCCCh
Q 008682 455 LQLQPDLGWMRR-LQQVLGRKHQRNLHAIYVLHPTFHLKATI----FTLQLLVDNVKVVYVDRLLQLFRYVPREQLTIPD 529 (557)
Q Consensus 455 ~~n~p~~~~Lk~-~~~~l~~~y~knLk~iyIvhps~~~k~~~----~~l~pfis~kKI~~v~sl~eL~~~I~~~qL~iP~ 529 (557)
.++..-.++++. ++.+.+.-..+|-.++|+++++.|+|.+. +++.++-.+|+..|.+..-.|.++|+.+|..+|-
T Consensus 1620 ~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~driL~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~ 1699 (2724)
T KOG1826|consen 1620 FDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDRILGQLGQPKMEFFNEIPIKLREHIDDYPQLYEF 1699 (2724)
T ss_pred ccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHHHHhhcCCCceeehhcCCHHHHHHHhhhhhhhhH
Confidence 666666667766 88889999999999999999999999986 4566666677999999999999999999999998
Q ss_pred HHHHhhhhhcC
Q 008682 530 FVFQHDLEVNG 540 (557)
Q Consensus 530 ~v~~~D~~~~~ 540 (557)
...-.++++.-
T Consensus 1700 ~t~~~~edlkv 1710 (2724)
T KOG1826|consen 1700 MTRHAFEDLKV 1710 (2724)
T ss_pred HHHHHHhhccc
Confidence 88877777643
No 29
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.09 E-value=0.0028 Score=64.42 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=99.7
Q ss_pred CCEEEEEEcCccce----------ecCEEEEcCCcCCCCCC---ch----HHHHHhhC--hhHH--HHHHHh-----CCC
Q 008682 82 NSKIYLWRGNPWNL----------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLA--EECATL-----GGC 135 (557)
Q Consensus 82 n~~I~i~~GDIt~~----------~vDaIVNsaN~~l~~~~---g~----~aI~~aaG--~~l~--~e~~~~-----~~~ 135 (557)
..+|.++.+|..+. .-=++.|.||..--.|| |+ .+|.+..+ +.|. .+.-.. .++
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~r~~~~pl 134 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFHRHQRSPL 134 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhhcccCCCC
Confidence 35799999995322 12389999988665443 22 24555443 2221 121100 123
Q ss_pred CCCCEEEccc--------CC-CCCC---eEEEEcCCCCCC-----cc-hhhHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 008682 136 RTGMAKVTNA--------YD-LPAR---RVIHTVGPKYAV-----KY-HTAAENALSHCYRSCLELLIENGLKSIAMGCI 197 (557)
Q Consensus 136 ~~G~~~vT~~--------~~-L~~k---~IIH~VgP~~~~-----~~-~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I 197 (557)
.+-.++.++. |+ |.-. -||=+..|++.. +. ..+..+.|..-++.+|..|..+|.+++.+.+.
T Consensus 135 ~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~ 214 (266)
T TIGR02452 135 YSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAW 214 (266)
T ss_pred CCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3333333222 22 2221 366666777642 11 23456789999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChh
Q 008682 198 YTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 239 (557)
Q Consensus 198 ~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~~~~~ 239 (557)
|||.|+-|+.++|+...+.+.. -......++.|+|.+++..
T Consensus 215 GCG~f~N~p~~VA~~f~evL~~-~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 215 GCGVFGNDPAEVAKIFHDLLSP-GGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred cccccCCCHHHHHHHHHHHhcc-CccccCceeEEEEEEeCCC
Confidence 9999999999999998888761 0112357999999999743
No 30
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.82 E-value=0.059 Score=59.45 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCCCEEEcccCCCCC-CeEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCCh-----HH
Q 008682 135 CRTGMAKVTNAYDLPA-RRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR-----EP 208 (557)
Q Consensus 135 ~~~G~~~vT~~~~L~~-k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~-----~~ 208 (557)
+.+|++.||+=-||.. -.|+|-|.-.-.....-.+..-+-..+||+|+.|..+++.+|.+|.+-+....-.. -.
T Consensus 372 l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~~ 451 (510)
T PF10154_consen 372 LKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCLK 451 (510)
T ss_pred CCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHHH
Confidence 5789999999999994 55788884321111111234567789999999999999999999999887543222 23
Q ss_pred HHHHHHHHHHHHHHHcC----CCccEEEEEecCh---hhHHHHHHHccccCC
Q 008682 209 AAHVAIRTVRRFLEKQK----DKISAVVFCTTTA---SDTEIYKRLLPLYFP 253 (557)
Q Consensus 209 ~A~i~l~ai~~fl~~~~----~~i~~V~~v~~~~---~~~~~y~~~l~~yfp 253 (557)
=|+..++.|+-|+-... ...+.|.|++-.. +.+..+...++..|.
T Consensus 452 Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 452 RAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 47888999999998753 2447899987654 344556666776664
No 31
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.11 Score=50.68 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCh--hhHHHHH
Q 008682 168 AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA--SDTEIYK 245 (557)
Q Consensus 168 ~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ai~~fl~~~~~~i~~V~~v~~~~--~~~~~y~ 245 (557)
+..+.|..-.+.+|.+|..++.+.+.+-+-|||.|+-.+..+|+++.+.+.+=.+.. ..++.|+|.++|. ....+|+
T Consensus 197 ~i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~-g~fkhv~FavlD~n~~~~~iFr 275 (285)
T COG4295 197 EIREALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKL-GDFKHVVFAVLDRNMTIVNIFR 275 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhh-cccceEEEEEecCCchHHHHHH
Confidence 346788999999999999999999999999999999999999999998877655444 3688999999974 4567888
Q ss_pred HHccc
Q 008682 246 RLLPL 250 (557)
Q Consensus 246 ~~l~~ 250 (557)
+.+..
T Consensus 276 ~ele~ 280 (285)
T COG4295 276 KELEY 280 (285)
T ss_pred HHHHh
Confidence 88763
No 32
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=36.44 E-value=79 Score=40.46 Aligned_cols=124 Identities=12% Similarity=0.129 Sum_probs=76.5
Q ss_pred cCCCCCCCCch-------HHH----hhhHHHHHHHhcCCChHHHhhccceEecccCCCCCeEEEEEeeeccCCCCCHHHH
Q 008682 360 FGDLGGPPLSA-------AEE----YSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERF 428 (557)
Q Consensus 360 l~~lg~p~~~~-------~~e----~~~~~~~l~~a~~~d~~~i~~~~i~y~~G~Dk~GRPVvvv~~~~~~~~~~d~e~l 428 (557)
|++||+|...- ..| +...-++|.++..+|++.=.+.+....-..-..|-+++.+-..+.-...+.++-+
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkvsnalk~s~~etkvsi~ig~~alt~Tnae~tkvl~~Sv 1747 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKVSNALKPSVHETKVSIGIGIIALTMTNAEDTKVLIDSV 1747 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccccccccchhhhhhhhcccCceEEEEeccccccchhhhH
Confidence 88999983211 112 2222358888888888773334444333555577777777665555455666666
Q ss_pred HHHHHHHcccccCCCEEEEEEcCCCCcCCCCcHHHHHHHHHHHhHHHhccccEEEEEC
Q 008682 429 VLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLH 486 (557)
Q Consensus 429 l~yvi~~Ld~~~~~~y~iV~d~t~~s~~n~p~~~~Lk~~~~~l~~~y~knLk~iyIvh 486 (557)
++-.++.-- .-+=++++|++.|+..-...-.++..++..+|.-...|+..-|-.|
T Consensus 1748 ~~kdl~~~a---eik~~cliD~tqFtl~ian~~~~ls~~h~~c~~i~qs~~h~~~~~~ 1802 (2724)
T KOG1826|consen 1748 AYKDLQIYA---EIKHCCLIDCTQFTLGIANMRKFLSLVHGLCPEIAQSNCHGCYYFN 1802 (2724)
T ss_pred HHHHHHHHh---hcceEEEEEcCeeeeccccccchhHHHHhhhHHHhhhheeeeeeEe
Confidence 555544322 3344688899999765444445666778888888888887666443
No 33
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=33.88 E-value=87 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCCCc--chhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 008682 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (557)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (557)
|+.|||++.|.-..+ ........=-...+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 689999988753322 2222233333677788888887777766664
No 34
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=29.63 E-value=89 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.749 Sum_probs=17.9
Q ss_pred hccceEecccCCCCCeEEEEEe
Q 008682 394 EMKIVYRGGVDSEGRPVMVVVG 415 (557)
Q Consensus 394 ~~~i~y~~G~Dk~GRPVvvv~~ 415 (557)
.+.+-|+.|+|.+|.||+--..
T Consensus 7 ~L~l~~~~G~d~~Gkpi~k~ks 28 (47)
T PF07872_consen 7 SLRLKYQTGVDENGKPIFKTKS 28 (47)
T ss_pred EEEEEEEcccCCCCCEEEEeee
Confidence 3567899999999999986643
No 35
>PHA00684 hypothetical protein
Probab=27.34 E-value=1.5e+02 Score=26.90 Aligned_cols=46 Identities=2% Similarity=-0.128 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHH
Q 008682 170 ENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (557)
Q Consensus 170 ~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g~p~~~~A~i~l~ 215 (557)
...++..+..-+..|.++--.+.-+..||||+.||..++.|....+
T Consensus 55 l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~ 100 (128)
T PHA00684 55 LPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRD 100 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhc
Confidence 4678999999999999998888999999999999999987776543
No 36
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=26.58 E-value=1.2e+02 Score=32.08 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCCCcch--hhHHHHHHHHHHHHHHHHHHcC-Ceeeeec
Q 008682 150 ARRVIHTVGPKYAVKYH--TAAENALSHCYRSCLELLIENG-LKSIAMG 195 (557)
Q Consensus 150 ~k~IIH~VgP~~~~~~~--~~~~~~L~~~y~~~L~~a~e~~-~~SIAfP 195 (557)
|+.|+|++.|.-..... .+....=-+...|+|+.|.+-+ ++.|.+.
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 89999999996544331 1112222244556666665544 5555553
No 37
>PLN02778 3,5-epimerase/4-reductase
Probab=25.81 E-value=1.2e+02 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCC------cchhhHHHHHHHHHHHHHHHHHHcCCeeeee
Q 008682 149 PARRVIHTVGPKYAV------KYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (557)
Q Consensus 149 ~~k~IIH~VgP~~~~------~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAf 194 (557)
.+++|||++++.... .........-.....++|+.|.+.|++-|.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 478999999875321 1111222222345668889999999876554
No 38
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.30 E-value=2e+02 Score=24.50 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCC
Q 008682 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (557)
Q Consensus 205 p~~~~A~i~l~ai~~fl~~~~~---~i~~V~~v~~~~~~~~~y~~~l~~yfp 253 (557)
..+.=++.+++.|+.-|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 23 d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 23 TVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 3456677788888998888764 444555556677888888888888998
No 39
>PLN02214 cinnamoyl-CoA reductase
Probab=22.03 E-value=1.9e+02 Score=30.25 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 008682 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (557)
Q Consensus 150 ~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (557)
++.|||+++|.... .....+.--....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~--~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD--PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999986432 111122223456788888888888877764
No 40
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.96 E-value=1.6e+02 Score=29.65 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCC----CCcchhhHHHHHHHHHHHHHHHHHHcCCeeeee
Q 008682 149 PARRVIHTVGPKY----AVKYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (557)
Q Consensus 149 ~~k~IIH~VgP~~----~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAf 194 (557)
.++.|||++++.- .........+.-.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999998631 112222222233346778999999999887777
No 41
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=20.87 E-value=1.3e+02 Score=31.38 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCCC---cchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCC
Q 008682 150 ARRVIHTVGPKYAV---KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKN 203 (557)
Q Consensus 150 ~k~IIH~VgP~~~~---~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~I~tG~~g 203 (557)
+++|||.++..... .......+.=..+..++|+.|.+.+++.+.++. +++.+|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S-S~~vyg 146 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA-SSSTYG 146 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-chHhhC
Confidence 57999999753211 111122223335678999999999998888854 233444
Done!