Query 008685
Match_columns 557
No_of_seqs 466 out of 3217
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 15:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.4E-88 3E-93 780.8 51.2 530 1-534 13-564 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-47 6.2E-52 417.4 25.2 367 178-556 161-594 (889)
3 PLN03194 putative disease resi 100.0 2.9E-38 6.2E-43 275.7 13.7 149 1-166 27-178 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-38 6E-43 313.1 15.1 264 180-448 1-284 (287)
5 PF01582 TIR: TIR domain; Int 99.8 3.1E-22 6.8E-27 175.3 1.1 132 3-134 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 1.6E-19 3.4E-24 158.5 11.5 135 1-137 2-138 (140)
7 PRK04841 transcriptional regul 99.7 1.4E-15 3E-20 174.6 27.0 291 169-485 9-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.7 2.3E-17 5E-22 136.1 2.5 92 3-102 1-92 (102)
9 COG3899 Predicted ATPase [Gene 99.6 1.4E-14 3.1E-19 160.7 17.1 325 176-510 1-407 (849)
10 COG2909 MalT ATP-dependent tra 99.5 1.3E-12 2.9E-17 137.8 24.1 290 170-485 15-341 (894)
11 PRK00411 cdc6 cell division co 99.4 3.3E-11 7.1E-16 124.9 25.8 279 175-463 30-358 (394)
12 PRK00080 ruvB Holliday junctio 99.4 3.8E-12 8.3E-17 127.9 16.3 258 175-467 25-314 (328)
13 TIGR00635 ruvB Holliday juncti 99.4 5.3E-12 1.1E-16 126.0 16.7 258 175-468 4-294 (305)
14 PF01637 Arch_ATPase: Archaeal 99.3 6.5E-12 1.4E-16 120.1 11.5 193 177-375 1-234 (234)
15 TIGR02928 orc1/cdc6 family rep 99.3 3.4E-09 7.3E-14 108.7 28.0 277 175-463 15-350 (365)
16 PF05729 NACHT: NACHT domain 99.1 4.9E-10 1.1E-14 101.0 12.1 143 199-344 1-163 (166)
17 TIGR03015 pepcterm_ATPase puta 99.1 3E-09 6.6E-14 104.1 17.8 176 197-379 42-242 (269)
18 COG3903 Predicted ATPase [Gene 99.1 7.7E-11 1.7E-15 115.7 5.6 281 197-485 13-317 (414)
19 PRK06893 DNA replication initi 99.0 6.4E-09 1.4E-13 98.8 14.9 154 198-379 39-207 (229)
20 COG2256 MGS1 ATPase related to 99.0 5.8E-09 1.2E-13 102.0 13.8 167 175-371 30-208 (436)
21 PRK13342 recombination factor 98.9 2.6E-07 5.7E-12 95.9 21.3 176 175-377 12-198 (413)
22 TIGR03420 DnaA_homol_Hda DnaA 98.8 6.6E-08 1.4E-12 92.0 14.6 174 175-378 15-204 (226)
23 PRK07003 DNA polymerase III su 98.8 4.7E-07 1E-11 96.8 21.5 180 175-375 16-221 (830)
24 PF14516 AAA_35: AAA-like doma 98.8 5.5E-06 1.2E-10 83.2 27.2 198 175-382 11-246 (331)
25 PRK07471 DNA polymerase III su 98.8 1.2E-06 2.7E-11 88.5 22.0 193 175-376 19-239 (365)
26 PRK00440 rfc replication facto 98.8 4.3E-07 9.2E-12 91.3 18.5 180 175-372 17-200 (319)
27 PRK14963 DNA polymerase III su 98.8 1.3E-06 2.9E-11 91.9 22.8 187 175-372 14-214 (504)
28 PRK12402 replication factor C 98.8 4.3E-07 9.2E-12 92.1 18.2 193 175-374 15-225 (337)
29 PRK08727 hypothetical protein; 98.7 2.1E-07 4.6E-12 88.6 14.7 168 175-372 19-201 (233)
30 PRK14961 DNA polymerase III su 98.7 1.5E-06 3.2E-11 88.6 21.7 186 175-372 16-217 (363)
31 PRK14949 DNA polymerase III su 98.7 1.6E-06 3.5E-11 94.6 22.7 180 175-372 16-217 (944)
32 PLN03025 replication factor C 98.7 8.8E-07 1.9E-11 88.8 18.8 180 175-372 13-197 (319)
33 PF13173 AAA_14: AAA domain 98.7 1.3E-07 2.8E-12 81.2 10.7 120 198-336 2-127 (128)
34 PRK05564 DNA polymerase III su 98.7 9.2E-07 2E-11 88.4 18.4 178 175-375 4-190 (313)
35 PRK04195 replication factor C 98.7 3.8E-07 8.3E-12 96.6 16.5 177 175-374 14-201 (482)
36 KOG3678 SARM protein (with ste 98.7 7.5E-08 1.6E-12 94.9 10.0 89 1-95 613-710 (832)
37 PRK08903 DnaA regulatory inact 98.7 4.4E-07 9.5E-12 86.4 15.1 172 175-379 18-203 (227)
38 PRK14960 DNA polymerase III su 98.7 1.7E-06 3.6E-11 91.7 20.5 189 175-372 15-216 (702)
39 PRK05642 DNA replication initi 98.7 5.1E-07 1.1E-11 86.0 15.3 154 198-379 45-212 (234)
40 PRK12323 DNA polymerase III su 98.7 1.9E-06 4.1E-11 91.1 20.5 191 175-373 16-223 (700)
41 PF00308 Bac_DnaA: Bacterial d 98.7 5.4E-07 1.2E-11 84.8 14.7 160 197-377 33-210 (219)
42 PF05496 RuvB_N: Holliday junc 98.7 2.2E-07 4.7E-12 85.2 11.5 175 175-378 24-224 (233)
43 PTZ00112 origin recognition co 98.7 8.2E-07 1.8E-11 95.6 17.1 272 175-463 755-1086(1164)
44 PRK08084 DNA replication initi 98.6 7.7E-07 1.7E-11 84.9 15.2 152 197-377 44-211 (235)
45 TIGR02397 dnaX_nterm DNA polym 98.6 4.3E-06 9.3E-11 85.4 21.2 181 175-376 14-219 (355)
46 PTZ00202 tuzin; Provisional 98.6 4.1E-06 8.9E-11 83.9 19.8 164 169-344 257-434 (550)
47 PRK14962 DNA polymerase III su 98.6 5.6E-06 1.2E-10 86.5 22.1 182 175-377 14-221 (472)
48 PF13191 AAA_16: AAA ATPase do 98.6 3.1E-08 6.8E-13 91.0 4.5 50 176-225 1-51 (185)
49 PRK09112 DNA polymerase III su 98.6 8.7E-07 1.9E-11 89.1 15.1 189 175-376 23-241 (351)
50 PRK14956 DNA polymerase III su 98.6 2.4E-06 5.3E-11 87.9 18.4 184 175-370 18-217 (484)
51 TIGR01242 26Sp45 26S proteasom 98.6 5.5E-07 1.2E-11 92.0 12.9 172 175-369 122-328 (364)
52 PRK07940 DNA polymerase III su 98.6 2.9E-06 6.2E-11 86.6 17.8 177 175-375 5-213 (394)
53 PRK08691 DNA polymerase III su 98.6 3.8E-06 8.2E-11 89.8 19.1 191 175-374 16-219 (709)
54 COG1474 CDC6 Cdc6-related prot 98.6 1.7E-05 3.6E-10 80.2 22.8 278 171-464 14-335 (366)
55 PRK09087 hypothetical protein; 98.6 1.6E-06 3.4E-11 81.9 14.2 142 198-378 44-198 (226)
56 PRK14087 dnaA chromosomal repl 98.5 1.3E-06 2.9E-11 91.0 14.7 166 198-378 141-322 (450)
57 KOG2028 ATPase related to the 98.5 7.1E-07 1.5E-11 86.0 11.5 172 175-369 138-330 (554)
58 PRK14964 DNA polymerase III su 98.5 8.7E-06 1.9E-10 84.8 20.6 177 175-372 13-214 (491)
59 TIGR00678 holB DNA polymerase 98.5 5.8E-06 1.3E-10 76.1 17.5 160 186-371 3-187 (188)
60 PRK07994 DNA polymerase III su 98.5 2.3E-06 5E-11 91.8 16.6 185 175-372 16-217 (647)
61 PRK14957 DNA polymerase III su 98.5 3.4E-06 7.5E-11 89.1 17.6 180 175-375 16-221 (546)
62 PRK06645 DNA polymerase III su 98.5 1.1E-05 2.3E-10 84.9 20.9 186 175-372 21-226 (507)
63 PRK13341 recombination factor 98.5 9.6E-06 2.1E-10 88.9 20.8 170 175-372 28-214 (725)
64 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3.1E-11 76.3 11.9 123 178-315 1-131 (151)
65 PRK14951 DNA polymerase III su 98.5 1.8E-05 3.8E-10 84.9 21.5 191 175-373 16-223 (618)
66 PRK14955 DNA polymerase III su 98.5 9.8E-06 2.1E-10 83.6 19.1 193 175-374 16-227 (397)
67 PRK05896 DNA polymerase III su 98.5 2.1E-05 4.5E-10 83.4 21.3 188 175-375 16-221 (605)
68 PRK14958 DNA polymerase III su 98.4 1.5E-05 3.2E-10 84.4 19.6 178 175-373 16-218 (509)
69 PRK07764 DNA polymerase III su 98.4 2.7E-05 5.8E-10 86.5 22.3 177 175-372 15-218 (824)
70 PRK14088 dnaA chromosomal repl 98.4 5.8E-06 1.3E-10 86.1 16.2 159 198-376 130-306 (440)
71 PRK09111 DNA polymerase III su 98.4 2.8E-05 6E-10 83.5 21.4 189 175-374 24-232 (598)
72 PF13401 AAA_22: AAA domain; P 98.4 2.1E-06 4.5E-11 73.9 10.6 110 197-313 3-125 (131)
73 PRK14970 DNA polymerase III su 98.4 4.4E-05 9.5E-10 78.2 21.7 178 175-372 17-206 (367)
74 PRK00149 dnaA chromosomal repl 98.4 6.2E-06 1.4E-10 86.7 15.5 159 198-375 148-322 (450)
75 PRK06620 hypothetical protein; 98.4 4.5E-06 9.7E-11 78.2 12.7 136 199-375 45-189 (214)
76 PRK03992 proteasome-activating 98.4 6.1E-06 1.3E-10 84.8 14.8 172 175-369 131-337 (389)
77 PRK14950 DNA polymerase III su 98.4 1.7E-05 3.8E-10 85.8 18.9 190 175-376 16-222 (585)
78 TIGR00362 DnaA chromosomal rep 98.4 9.9E-06 2.2E-10 84.1 16.1 160 198-376 136-311 (405)
79 PRK14952 DNA polymerase III su 98.4 8.7E-05 1.9E-09 79.4 23.2 183 175-370 13-214 (584)
80 PRK14959 DNA polymerase III su 98.4 2.4E-05 5.2E-10 83.4 18.8 184 175-379 16-225 (624)
81 COG2255 RuvB Holliday junction 98.4 1.8E-05 3.9E-10 74.4 15.6 260 175-468 26-316 (332)
82 PRK14954 DNA polymerase III su 98.4 2.4E-05 5.1E-10 84.2 18.6 193 175-370 16-223 (620)
83 TIGR02881 spore_V_K stage V sp 98.3 7E-06 1.5E-10 79.8 13.3 152 176-345 7-192 (261)
84 PRK14953 DNA polymerase III su 98.3 0.00014 3E-09 76.6 23.6 175 175-375 16-220 (486)
85 PRK14969 DNA polymerase III su 98.3 1.3E-05 2.9E-10 85.2 16.1 175 175-370 16-215 (527)
86 PRK14086 dnaA chromosomal repl 98.3 1.7E-05 3.7E-10 84.1 15.9 157 198-375 314-488 (617)
87 PRK08451 DNA polymerase III su 98.3 0.0001 2.2E-09 77.8 21.5 180 175-374 14-217 (535)
88 TIGR02639 ClpA ATP-dependent C 98.3 9.4E-06 2E-10 90.3 14.7 174 175-366 182-382 (731)
89 PRK12422 chromosomal replicati 98.3 3.7E-05 8E-10 80.0 18.1 151 198-369 141-307 (445)
90 TIGR03345 VI_ClpV1 type VI sec 98.3 2.1E-05 4.5E-10 88.4 16.6 176 175-369 187-390 (852)
91 PHA02544 44 clamp loader, smal 98.3 1.2E-05 2.5E-10 80.8 13.2 146 175-342 21-171 (316)
92 PRK06647 DNA polymerase III su 98.3 0.00013 2.7E-09 78.2 21.3 189 175-372 16-217 (563)
93 PRK07133 DNA polymerase III su 98.2 1.3E-05 2.8E-10 86.7 13.5 189 175-374 18-219 (725)
94 PRK06305 DNA polymerase III su 98.2 3.7E-05 7.9E-10 80.3 16.5 178 175-371 17-218 (451)
95 PRK14948 DNA polymerase III su 98.2 0.00025 5.5E-09 76.8 23.2 190 175-375 16-222 (620)
96 PRK14971 DNA polymerase III su 98.2 0.0003 6.6E-09 76.2 23.6 177 175-372 17-219 (614)
97 PRK05707 DNA polymerase III su 98.2 8.6E-05 1.9E-09 74.1 17.9 158 197-375 21-203 (328)
98 CHL00095 clpC Clp protease ATP 98.2 2.6E-05 5.5E-10 88.0 14.8 172 175-367 179-379 (821)
99 PRK05563 DNA polymerase III su 98.1 0.00021 4.5E-09 76.8 20.4 185 175-372 16-217 (559)
100 PF08937 DUF1863: MTH538 TIR-l 98.1 5.8E-06 1.3E-10 71.0 6.5 86 2-92 2-105 (130)
101 TIGR03689 pup_AAA proteasome A 98.1 4.9E-05 1.1E-09 79.6 14.1 164 170-344 177-378 (512)
102 PTZ00454 26S protease regulato 98.1 4.9E-05 1.1E-09 77.8 13.9 172 175-369 145-351 (398)
103 COG0593 DnaA ATPase involved i 98.1 0.00015 3.2E-09 73.4 16.4 152 197-368 112-279 (408)
104 PRK14965 DNA polymerase III su 98.1 0.00029 6.3E-09 76.0 19.7 177 175-375 16-221 (576)
105 PRK10865 protein disaggregatio 98.1 6.8E-05 1.5E-09 84.6 15.3 151 175-344 178-354 (857)
106 PRK07399 DNA polymerase III su 98.1 0.00062 1.4E-08 67.6 20.4 190 175-376 4-222 (314)
107 TIGR03346 chaperone_ClpB ATP-d 98.1 6.6E-05 1.4E-09 85.0 15.2 152 175-344 173-349 (852)
108 PTZ00361 26 proteosome regulat 98.1 4.2E-05 9.2E-10 78.9 12.3 173 175-369 183-389 (438)
109 PF05673 DUF815: Protein of un 98.0 0.00018 3.9E-09 67.2 15.1 52 175-226 27-80 (249)
110 TIGR02880 cbbX_cfxQ probable R 98.0 0.00011 2.3E-09 72.2 14.5 130 199-345 59-209 (284)
111 KOG0989 Replication factor C, 98.0 2.9E-05 6.3E-10 73.8 9.6 176 175-369 36-224 (346)
112 PF00004 AAA: ATPase family as 98.0 6E-05 1.3E-09 64.7 10.6 23 201-223 1-23 (132)
113 PRK08116 hypothetical protein; 98.0 5.1E-05 1.1E-09 73.7 10.9 102 199-314 115-221 (268)
114 COG1222 RPT1 ATP-dependent 26S 98.0 0.00027 5.8E-09 68.8 15.2 173 175-370 151-358 (406)
115 COG1373 Predicted ATPase (AAA+ 98.0 0.00064 1.4E-08 70.0 18.9 239 180-462 22-269 (398)
116 TIGR02903 spore_lon_C ATP-depe 97.9 0.00013 2.8E-09 79.3 14.2 47 175-223 154-200 (615)
117 PRK11034 clpA ATP-dependent Cl 97.9 8E-05 1.7E-09 82.2 12.5 152 175-344 186-362 (758)
118 TIGR01241 FtsH_fam ATP-depende 97.9 0.00012 2.6E-09 78.0 13.5 178 175-375 55-267 (495)
119 PRK08769 DNA polymerase III su 97.9 0.00073 1.6E-08 66.9 17.7 168 183-376 12-209 (319)
120 cd01128 rho_factor Transcripti 97.9 2.9E-05 6.3E-10 74.1 7.6 88 197-287 15-114 (249)
121 PRK09376 rho transcription ter 97.9 2.5E-05 5.4E-10 78.0 7.1 89 197-288 168-268 (416)
122 PRK07952 DNA replication prote 97.9 0.00052 1.1E-08 65.3 15.7 73 198-285 99-171 (244)
123 CHL00176 ftsH cell division pr 97.9 0.00011 2.5E-09 79.5 12.5 171 175-367 183-386 (638)
124 CHL00181 cbbX CbbX; Provisiona 97.9 0.00035 7.6E-09 68.5 14.5 132 198-346 59-211 (287)
125 CHL00195 ycf46 Ycf46; Provisio 97.9 0.002 4.3E-08 67.7 20.9 174 175-369 228-429 (489)
126 PF08357 SEFIR: SEFIR domain; 97.9 2E-05 4.4E-10 69.6 5.2 64 2-65 2-70 (150)
127 PF05621 TniB: Bacterial TniB 97.8 0.0004 8.6E-09 67.1 13.7 196 175-375 34-261 (302)
128 PRK12377 putative replication 97.8 7.6E-05 1.7E-09 71.2 8.8 36 198-233 101-136 (248)
129 COG3267 ExeA Type II secretory 97.8 0.0013 2.9E-08 61.3 16.3 177 196-378 49-248 (269)
130 PRK08181 transposase; Validate 97.8 0.00015 3.2E-09 70.1 10.4 99 199-314 107-209 (269)
131 PRK06090 DNA polymerase III su 97.8 0.0027 5.8E-08 62.9 19.3 160 183-376 11-202 (319)
132 PRK06871 DNA polymerase III su 97.8 0.0011 2.3E-08 65.9 16.5 173 183-372 10-200 (325)
133 PRK07993 DNA polymerase III su 97.8 0.00088 1.9E-08 67.1 15.9 158 183-372 10-201 (334)
134 PF01695 IstB_IS21: IstB-like 97.7 4.5E-05 9.7E-10 69.2 5.6 36 198-233 47-82 (178)
135 PRK08058 DNA polymerase III su 97.7 0.002 4.2E-08 64.8 17.9 145 176-343 6-181 (329)
136 TIGR00767 rho transcription te 97.7 0.00011 2.3E-09 73.9 8.6 89 197-288 167-267 (415)
137 KOG2227 Pre-initiation complex 97.7 0.0014 3E-08 66.2 16.2 193 175-373 150-366 (529)
138 PF10443 RNA12: RNA12 protein; 97.7 0.012 2.5E-07 59.7 22.7 102 276-381 148-284 (431)
139 KOG2543 Origin recognition com 97.7 0.00043 9.3E-09 67.9 12.1 159 175-344 6-193 (438)
140 TIGR00602 rad24 checkpoint pro 97.7 0.00033 7E-09 75.5 11.6 49 175-223 84-135 (637)
141 PRK09183 transposase/IS protei 97.7 0.00021 4.6E-09 69.1 9.2 35 198-232 102-136 (259)
142 TIGR01243 CDC48 AAA family ATP 97.6 0.00081 1.8E-08 75.3 14.8 172 175-369 178-381 (733)
143 TIGR01243 CDC48 AAA family ATP 97.6 0.00094 2E-08 74.8 15.2 172 175-369 453-657 (733)
144 PRK06526 transposase; Provisio 97.6 9.5E-05 2.1E-09 71.0 6.2 34 198-231 98-131 (254)
145 PRK06964 DNA polymerase III su 97.6 0.0051 1.1E-07 61.6 18.4 91 275-375 131-225 (342)
146 TIGR02639 ClpA ATP-dependent C 97.5 0.0019 4E-08 72.2 15.9 48 175-222 454-508 (731)
147 PRK10536 hypothetical protein; 97.5 0.001 2.2E-08 63.1 11.6 43 175-221 55-97 (262)
148 PLN00020 ribulose bisphosphate 97.5 0.0016 3.5E-08 64.5 13.3 154 196-370 146-333 (413)
149 smart00382 AAA ATPases associa 97.5 0.00036 7.7E-09 60.3 7.9 34 199-232 3-36 (148)
150 PRK06835 DNA replication prote 97.5 0.00023 4.9E-09 71.0 7.2 35 199-233 184-218 (329)
151 KOG0735 AAA+-type ATPase [Post 97.5 0.0016 3.4E-08 68.9 13.4 161 198-375 431-616 (952)
152 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0024 5.2E-08 62.0 13.7 24 199-222 22-45 (262)
153 COG1484 DnaC DNA replication p 97.4 0.00038 8.3E-09 66.9 7.7 37 197-233 104-140 (254)
154 PRK08939 primosomal protein Dn 97.4 0.001 2.2E-08 65.8 10.8 99 198-313 156-260 (306)
155 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0025 5.3E-08 66.3 13.5 51 175-225 190-250 (802)
156 PRK06921 hypothetical protein; 97.4 0.00022 4.8E-09 69.1 5.8 36 198-233 117-153 (266)
157 COG2812 DnaX DNA polymerase II 97.4 0.0039 8.4E-08 65.2 15.1 183 175-369 16-214 (515)
158 PF02562 PhoH: PhoH-like prote 97.4 0.00059 1.3E-08 62.8 8.1 126 180-313 5-155 (205)
159 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0066 1.4E-07 69.0 18.1 51 175-225 565-622 (852)
160 PF13177 DNA_pol3_delta2: DNA 97.4 0.0039 8.4E-08 55.7 13.1 138 179-332 1-162 (162)
161 TIGR00763 lon ATP-dependent pr 97.4 0.0048 1E-07 69.4 16.8 52 175-226 320-375 (775)
162 PRK08699 DNA polymerase III su 97.4 0.0066 1.4E-07 60.6 16.0 87 276-372 113-203 (325)
163 KOG0744 AAA+-type ATPase [Post 97.4 0.00071 1.5E-08 64.9 8.4 77 198-287 177-261 (423)
164 COG2607 Predicted ATPase (AAA+ 97.3 0.0054 1.2E-07 56.7 13.2 54 175-228 60-115 (287)
165 PRK11331 5-methylcytosine-spec 97.3 0.00047 1E-08 70.5 6.7 55 175-233 175-231 (459)
166 PRK10865 protein disaggregatio 97.3 0.008 1.7E-07 68.1 17.1 51 175-225 568-625 (857)
167 PRK04132 replication factor C 97.3 0.01 2.2E-07 66.1 17.3 154 203-373 569-729 (846)
168 COG0466 Lon ATP-dependent Lon 97.3 0.0016 3.4E-08 69.2 10.5 155 175-344 323-508 (782)
169 KOG0741 AAA+-type ATPase [Post 97.3 0.0079 1.7E-07 61.6 14.9 129 196-343 536-685 (744)
170 PF04665 Pox_A32: Poxvirus A32 97.3 0.00041 9E-09 65.3 5.5 35 199-233 14-48 (241)
171 PRK10787 DNA-binding ATP-depen 97.3 0.0072 1.6E-07 67.5 16.1 158 175-344 322-506 (784)
172 KOG0731 AAA+-type ATPase conta 97.3 0.0067 1.5E-07 65.7 15.1 176 175-372 311-521 (774)
173 smart00763 AAA_PrkA PrkA AAA d 97.3 0.001 2.2E-08 66.2 8.3 55 169-224 46-104 (361)
174 KOG0991 Replication factor C, 97.2 0.0029 6.3E-08 58.0 10.4 48 175-224 27-74 (333)
175 cd01120 RecA-like_NTPases RecA 97.2 0.0023 4.9E-08 57.0 9.6 34 200-233 1-34 (165)
176 PF14532 Sigma54_activ_2: Sigm 97.2 0.00041 8.8E-09 60.3 4.4 46 178-223 1-46 (138)
177 COG0542 clpA ATP-binding subun 97.2 0.0025 5.4E-08 69.5 11.1 115 175-299 491-618 (786)
178 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0011 2.4E-08 63.7 7.5 42 197-238 68-109 (274)
179 cd01131 PilT Pilus retraction 97.2 0.0014 3.1E-08 60.7 8.1 109 199-316 2-111 (198)
180 COG0542 clpA ATP-binding subun 97.2 0.0052 1.1E-07 67.1 13.3 150 175-344 170-346 (786)
181 TIGR02974 phageshock_pspF psp 97.2 0.0054 1.2E-07 61.5 12.6 47 177-223 1-47 (329)
182 CHL00095 clpC Clp protease ATP 97.1 0.0035 7.6E-08 71.0 12.0 130 175-314 509-662 (821)
183 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0053 1.1E-07 54.1 10.6 114 199-315 3-139 (159)
184 PRK12608 transcription termina 97.1 0.0024 5.2E-08 63.9 9.3 99 185-287 121-231 (380)
185 PF13207 AAA_17: AAA domain; P 97.1 0.00042 9E-09 58.6 3.4 23 200-222 1-23 (121)
186 PF10236 DAP3: Mitochondrial r 97.1 0.014 3.1E-07 57.9 14.7 48 325-372 258-306 (309)
187 PRK11608 pspF phage shock prot 97.1 0.01 2.2E-07 59.5 13.7 47 175-221 6-52 (326)
188 COG1223 Predicted ATPase (AAA+ 97.1 0.0095 2.1E-07 55.7 12.0 172 175-369 121-319 (368)
189 COG0470 HolB ATPase involved i 97.1 0.0065 1.4E-07 61.1 12.3 146 177-336 3-173 (325)
190 PF07693 KAP_NTPase: KAP famil 97.1 0.018 3.9E-07 57.9 15.6 45 181-225 2-47 (325)
191 TIGR01650 PD_CobS cobaltochela 97.1 0.015 3.3E-07 57.3 14.3 52 170-226 41-92 (327)
192 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0025 5.3E-08 72.0 10.0 51 175-225 566-623 (852)
193 PRK09361 radB DNA repair and r 97.0 0.0026 5.7E-08 60.3 8.7 48 186-233 11-58 (225)
194 KOG2004 Mitochondrial ATP-depe 97.0 0.0044 9.6E-08 65.7 10.7 53 175-227 411-467 (906)
195 KOG0730 AAA+-type ATPase [Post 97.0 0.0044 9.6E-08 65.2 10.6 151 196-369 466-637 (693)
196 KOG1970 Checkpoint RAD17-RFC c 97.0 0.011 2.4E-07 61.0 13.2 43 180-222 87-134 (634)
197 KOG0739 AAA+-type ATPase [Post 97.0 0.13 2.8E-06 49.3 19.1 172 175-369 133-335 (439)
198 PRK08118 topology modulation p 97.0 0.002 4.4E-08 57.8 7.1 33 199-231 2-37 (167)
199 PRK06696 uridine kinase; Valid 97.0 0.0012 2.6E-08 62.5 5.9 47 179-225 2-49 (223)
200 PRK04296 thymidine kinase; Pro 97.0 0.0016 3.4E-08 60.0 6.5 108 199-315 3-117 (190)
201 KOG0729 26S proteasome regulat 97.0 0.012 2.6E-07 55.1 11.9 121 175-315 177-327 (435)
202 TIGR01817 nifA Nif-specific re 97.0 0.0086 1.9E-07 64.6 12.8 49 175-223 196-244 (534)
203 PHA00729 NTP-binding motif con 97.0 0.0031 6.8E-08 58.8 8.0 27 197-223 16-42 (226)
204 KOG1514 Origin recognition com 96.9 0.021 4.6E-07 60.7 14.7 165 175-345 396-590 (767)
205 cd01121 Sms Sms (bacterial rad 96.9 0.0051 1.1E-07 62.5 10.0 93 185-285 69-167 (372)
206 KOG0733 Nuclear AAA ATPase (VC 96.9 0.013 2.9E-07 61.1 12.6 128 198-345 545-693 (802)
207 TIGR02902 spore_lonB ATP-depen 96.9 0.012 2.6E-07 63.1 13.1 46 175-222 65-110 (531)
208 PRK05541 adenylylsulfate kinas 96.9 0.0018 3.8E-08 58.8 5.9 37 197-233 6-42 (176)
209 PRK00771 signal recognition pa 96.9 0.03 6.5E-07 58.0 15.5 29 197-225 94-122 (437)
210 cd00544 CobU Adenosylcobinamid 96.9 0.017 3.6E-07 51.9 11.7 30 201-233 2-31 (169)
211 PRK11889 flhF flagellar biosyn 96.9 0.011 2.3E-07 59.7 11.2 36 197-232 240-275 (436)
212 TIGR01420 pilT_fam pilus retra 96.9 0.004 8.7E-08 62.9 8.5 107 198-315 122-231 (343)
213 COG1618 Predicted nucleotide k 96.8 0.0013 2.7E-08 56.9 4.0 31 198-228 5-36 (179)
214 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0036 7.9E-08 60.7 7.8 102 183-297 68-170 (264)
215 PRK07667 uridine kinase; Provi 96.8 0.0026 5.7E-08 58.7 6.5 42 184-225 3-44 (193)
216 cd01393 recA_like RecA is a b 96.8 0.0093 2E-07 56.5 10.5 48 186-233 7-60 (226)
217 PRK06067 flagellar accessory p 96.8 0.0091 2E-07 57.0 10.4 49 185-233 12-60 (234)
218 PF03215 Rad17: Rad17 cell cyc 96.8 0.008 1.7E-07 63.7 10.7 56 175-232 19-77 (519)
219 PRK10733 hflB ATP-dependent me 96.8 0.0093 2E-07 65.5 11.6 148 199-368 186-356 (644)
220 PTZ00494 tuzin-like protein; P 96.8 0.47 1E-05 48.4 22.1 208 125-344 301-544 (664)
221 cd01124 KaiC KaiC is a circadi 96.8 0.0066 1.4E-07 55.6 9.0 33 201-233 2-34 (187)
222 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0073 1.6E-07 57.6 9.6 48 186-233 7-60 (235)
223 COG1066 Sms Predicted ATP-depe 96.8 0.0098 2.1E-07 59.4 10.4 93 184-285 79-177 (456)
224 PF13671 AAA_33: AAA domain; P 96.8 0.01 2.2E-07 51.6 9.7 24 200-223 1-24 (143)
225 KOG2228 Origin recognition com 96.8 0.02 4.3E-07 55.7 11.9 169 175-344 24-219 (408)
226 PRK11034 clpA ATP-dependent Cl 96.8 0.0071 1.5E-07 67.1 10.2 49 175-223 458-513 (758)
227 PRK15429 formate hydrogenlyase 96.7 0.031 6.7E-07 62.3 15.2 49 175-223 376-424 (686)
228 COG4088 Predicted nucleotide k 96.7 0.0085 1.8E-07 54.0 8.5 32 199-230 2-33 (261)
229 PRK05022 anaerobic nitric oxid 96.7 0.032 6.8E-07 59.8 14.5 49 175-223 187-235 (509)
230 PF01583 APS_kinase: Adenylyls 96.7 0.0026 5.7E-08 55.7 5.1 36 198-233 2-37 (156)
231 KOG0727 26S proteasome regulat 96.7 0.02 4.3E-07 53.2 10.7 51 175-225 155-216 (408)
232 PF13604 AAA_30: AAA domain; P 96.7 0.0077 1.7E-07 55.6 8.3 113 184-314 7-131 (196)
233 TIGR00064 ftsY signal recognit 96.6 0.043 9.2E-07 53.4 13.3 37 196-232 70-106 (272)
234 TIGR00708 cobA cob(I)alamin ad 96.6 0.0094 2E-07 53.2 8.0 112 198-314 5-140 (173)
235 COG0488 Uup ATPase components 96.6 0.084 1.8E-06 56.2 16.3 27 197-223 347-373 (530)
236 KOG0652 26S proteasome regulat 96.6 0.065 1.4E-06 50.1 13.3 49 175-223 171-230 (424)
237 TIGR00416 sms DNA repair prote 96.6 0.012 2.7E-07 61.5 9.9 51 183-233 79-129 (454)
238 KOG0728 26S proteasome regulat 96.5 0.058 1.3E-06 50.2 12.8 150 176-344 147-331 (404)
239 PRK11388 DNA-binding transcrip 96.5 0.031 6.7E-07 61.8 13.4 48 175-222 325-372 (638)
240 KOG0743 AAA+-type ATPase [Post 96.5 0.04 8.7E-07 55.9 12.8 151 198-380 235-414 (457)
241 PRK11823 DNA repair protein Ra 96.5 0.015 3.2E-07 60.9 10.2 94 184-285 66-165 (446)
242 TIGR02237 recomb_radB DNA repa 96.5 0.0038 8.1E-08 58.4 5.3 44 190-233 4-47 (209)
243 PRK12726 flagellar biosynthesi 96.5 0.069 1.5E-06 53.8 14.1 37 197-233 205-241 (407)
244 PRK15455 PrkA family serine pr 96.5 0.003 6.5E-08 66.3 4.7 49 176-224 77-129 (644)
245 cd01394 radB RadB. The archaea 96.5 0.0058 1.3E-07 57.6 6.3 49 185-233 6-54 (218)
246 KOG0734 AAA+-type ATPase conta 96.5 0.0095 2.1E-07 61.1 8.0 48 175-222 304-361 (752)
247 PF13238 AAA_18: AAA domain; P 96.5 0.0022 4.9E-08 54.5 3.1 22 201-222 1-22 (129)
248 PRK08533 flagellar accessory p 96.4 0.018 3.9E-07 54.6 9.2 38 196-233 22-59 (230)
249 PF00910 RNA_helicase: RNA hel 96.4 0.0021 4.5E-08 53.1 2.2 26 201-226 1-26 (107)
250 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.007 1.5E-07 61.2 6.5 96 198-296 134-232 (358)
251 PRK14722 flhF flagellar biosyn 96.4 0.022 4.8E-07 57.6 10.0 30 197-226 136-165 (374)
252 PF00448 SRP54: SRP54-type pro 96.4 0.02 4.3E-07 52.8 8.9 36 198-233 1-36 (196)
253 PRK14974 cell division protein 96.4 0.044 9.6E-07 54.8 11.9 29 197-225 139-167 (336)
254 cd03238 ABC_UvrA The excision 96.4 0.021 4.5E-07 51.7 8.8 24 197-220 20-43 (176)
255 cd03228 ABCC_MRP_Like The MRP 96.3 0.016 3.5E-07 52.2 8.2 35 197-232 27-61 (171)
256 TIGR01069 mutS2 MutS2 family p 96.3 0.0042 9.1E-08 69.2 5.1 179 198-395 322-521 (771)
257 PF00485 PRK: Phosphoribulokin 96.3 0.0034 7.3E-08 58.0 3.6 26 200-225 1-26 (194)
258 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.4E-08 36.1 1.3 22 534-556 1-22 (22)
259 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.011 2.3E-07 51.7 6.6 104 197-318 25-131 (144)
260 PF08433 KTI12: Chromatin asso 96.3 0.0027 5.7E-08 61.6 3.0 34 199-232 2-35 (270)
261 PRK12723 flagellar biosynthesi 96.3 0.043 9.3E-07 56.0 11.8 27 197-223 173-199 (388)
262 PRK07261 topology modulation p 96.3 0.0028 6.1E-08 57.2 3.0 23 200-222 2-24 (171)
263 KOG1969 DNA replication checkp 96.3 0.014 3E-07 62.3 8.3 75 196-287 324-398 (877)
264 PRK07132 DNA polymerase III su 96.3 0.75 1.6E-05 45.3 20.0 167 184-375 5-185 (299)
265 cd03216 ABC_Carb_Monos_I This 96.3 0.007 1.5E-07 54.1 5.4 118 197-318 25-146 (163)
266 PRK05800 cobU adenosylcobinami 96.3 0.079 1.7E-06 47.6 12.0 23 200-222 3-25 (170)
267 cd03223 ABCD_peroxisomal_ALDP 96.3 0.026 5.6E-07 50.6 8.9 116 197-317 26-151 (166)
268 KOG2035 Replication factor C, 96.2 0.11 2.4E-06 49.2 13.0 183 175-369 13-222 (351)
269 COG0467 RAD55 RecA-superfamily 96.2 0.023 4.9E-07 55.2 9.0 45 189-233 14-58 (260)
270 COG0464 SpoVK ATPases of the A 96.2 0.036 7.8E-07 59.3 11.2 150 197-367 275-445 (494)
271 PRK05986 cob(I)alamin adenolsy 96.2 0.017 3.7E-07 52.4 7.3 114 198-314 22-158 (191)
272 PF03308 ArgK: ArgK protein; 96.2 0.012 2.6E-07 55.5 6.6 45 183-227 14-58 (266)
273 cd03214 ABC_Iron-Siderophores_ 96.2 0.028 6E-07 51.2 8.9 117 197-317 24-161 (180)
274 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.034 7.3E-07 52.8 9.8 48 186-233 8-55 (229)
275 cd02019 NK Nucleoside/nucleoti 96.2 0.004 8.7E-08 46.7 2.7 23 200-222 1-23 (69)
276 TIGR02238 recomb_DMC1 meiotic 96.2 0.036 7.8E-07 55.0 10.1 49 185-233 83-137 (313)
277 TIGR02655 circ_KaiC circadian 96.2 0.017 3.8E-07 61.3 8.4 51 183-233 248-298 (484)
278 cd03115 SRP The signal recogni 96.2 0.056 1.2E-06 48.8 10.7 26 200-225 2-27 (173)
279 PRK06762 hypothetical protein; 96.1 0.0046 1E-07 55.5 3.5 25 198-222 2-26 (166)
280 PRK12724 flagellar biosynthesi 96.1 0.037 8E-07 56.5 10.2 25 198-222 223-247 (432)
281 COG4608 AppF ABC-type oligopep 96.1 0.017 3.6E-07 54.9 7.2 122 197-320 38-176 (268)
282 COG0465 HflB ATP-dependent Zn 96.1 0.046 9.9E-07 58.2 11.1 175 175-371 150-357 (596)
283 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.018 3.9E-07 58.3 7.9 101 197-312 61-166 (362)
284 TIGR01425 SRP54_euk signal rec 96.1 0.23 5.1E-06 51.2 16.0 36 197-232 99-134 (429)
285 PF10137 TIR-like: Predicted n 96.1 0.016 3.4E-07 48.8 6.3 60 2-64 1-61 (125)
286 PRK08233 hypothetical protein; 96.1 0.0044 9.6E-08 56.5 3.3 26 198-223 3-28 (182)
287 TIGR03499 FlhF flagellar biosy 96.1 0.031 6.7E-07 54.8 9.4 29 197-225 193-221 (282)
288 PRK05480 uridine/cytidine kina 96.1 0.0053 1.1E-07 57.5 3.8 27 196-222 4-30 (209)
289 PF00437 T2SE: Type II/IV secr 96.1 0.0058 1.3E-07 59.7 4.3 125 175-313 104-231 (270)
290 PRK09270 nucleoside triphospha 96.1 0.0078 1.7E-07 57.2 4.9 32 195-226 30-61 (229)
291 PRK13531 regulatory ATPase Rav 96.1 0.005 1.1E-07 63.8 3.7 46 175-224 20-65 (498)
292 PLN03187 meiotic recombination 96.1 0.039 8.4E-07 55.3 9.9 48 186-233 114-167 (344)
293 cd03247 ABCC_cytochrome_bd The 96.1 0.038 8.3E-07 50.1 9.2 26 197-222 27-52 (178)
294 PF07726 AAA_3: ATPase family 96.1 0.0035 7.6E-08 52.6 2.1 28 201-228 2-29 (131)
295 PRK04301 radA DNA repair and r 96.1 0.038 8.3E-07 55.3 9.9 49 185-233 89-143 (317)
296 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0079 1.7E-07 51.3 4.2 41 183-223 7-47 (133)
297 TIGR03574 selen_PSTK L-seryl-t 96.1 0.019 4E-07 55.4 7.4 26 200-225 1-26 (249)
298 PRK04328 hypothetical protein; 96.0 0.032 6.9E-07 53.7 8.9 48 186-233 11-58 (249)
299 PTZ00301 uridine kinase; Provi 96.0 0.0059 1.3E-07 56.9 3.7 29 198-226 3-31 (210)
300 PF07728 AAA_5: AAA domain (dy 96.0 0.01 2.2E-07 51.5 4.9 22 201-222 2-23 (139)
301 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.011 2.3E-07 57.3 5.6 38 196-233 34-71 (259)
302 KOG0651 26S proteasome regulat 96.0 0.025 5.4E-07 54.4 7.6 30 197-226 165-194 (388)
303 cd02027 APSK Adenosine 5'-phos 96.0 0.024 5.1E-07 49.9 7.1 25 200-224 1-25 (149)
304 PRK04040 adenylate kinase; Pro 96.0 0.0071 1.5E-07 55.4 3.8 26 198-223 2-27 (188)
305 PRK10820 DNA-binding transcrip 96.0 0.071 1.5E-06 57.2 12.0 47 175-221 204-250 (520)
306 PRK00131 aroK shikimate kinase 96.0 0.006 1.3E-07 55.1 3.3 26 197-222 3-28 (175)
307 cd03222 ABC_RNaseL_inhibitor T 95.9 0.016 3.5E-07 52.5 6.0 105 197-318 24-136 (177)
308 PF08423 Rad51: Rad51; InterP 95.9 0.03 6.6E-07 54.0 8.2 48 186-233 26-79 (256)
309 COG1703 ArgK Putative periplas 95.9 0.018 3.9E-07 55.2 6.4 48 185-232 38-85 (323)
310 PRK03839 putative kinase; Prov 95.9 0.0059 1.3E-07 55.6 3.1 24 200-223 2-25 (180)
311 TIGR00235 udk uridine kinase. 95.9 0.0073 1.6E-07 56.4 3.8 28 196-223 4-31 (207)
312 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.015 3.2E-07 55.6 6.0 49 185-233 8-56 (237)
313 KOG0726 26S proteasome regulat 95.9 0.063 1.4E-06 51.1 9.7 119 175-313 185-333 (440)
314 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.01 2.2E-07 55.6 4.6 24 198-221 29-52 (213)
315 KOG0735 AAA+-type ATPase [Post 95.9 0.18 3.8E-06 54.0 13.9 150 199-371 702-872 (952)
316 COG0396 sufC Cysteine desulfur 95.9 0.069 1.5E-06 49.3 9.7 59 266-326 152-216 (251)
317 TIGR02236 recomb_radA DNA repa 95.9 0.049 1.1E-06 54.3 9.8 48 186-233 83-136 (310)
318 COG0468 RecA RecA/RadA recombi 95.9 0.028 6E-07 54.4 7.6 49 187-235 49-97 (279)
319 cd03246 ABCC_Protease_Secretio 95.9 0.046 9.9E-07 49.4 8.7 26 197-222 27-52 (173)
320 COG3854 SpoIIIAA ncharacterize 95.9 0.046 9.9E-07 50.4 8.4 110 200-314 139-253 (308)
321 PRK05703 flhF flagellar biosyn 95.9 0.1 2.2E-06 54.2 12.3 36 198-233 221-258 (424)
322 PRK00889 adenylylsulfate kinas 95.8 0.013 2.8E-07 53.1 4.9 36 197-232 3-38 (175)
323 TIGR02533 type_II_gspE general 95.8 0.031 6.6E-07 59.1 8.3 106 178-296 224-331 (486)
324 cd01125 repA Hexameric Replica 95.8 0.088 1.9E-06 50.3 10.9 24 200-223 3-26 (239)
325 cd01858 NGP_1 NGP-1. Autoanti 95.8 0.1 2.2E-06 46.3 10.5 43 179-221 82-125 (157)
326 PRK06547 hypothetical protein; 95.8 0.0089 1.9E-07 53.9 3.6 27 196-222 13-39 (172)
327 PRK00625 shikimate kinase; Pro 95.8 0.0074 1.6E-07 54.4 3.0 24 200-223 2-25 (173)
328 KOG0736 Peroxisome assembly fa 95.8 0.19 4.2E-06 54.2 13.7 99 169-287 666-775 (953)
329 COG0572 Udk Uridine kinase [Nu 95.8 0.011 2.5E-07 54.4 4.2 30 196-225 6-35 (218)
330 PRK12727 flagellar biosynthesi 95.7 0.15 3.2E-06 53.7 12.7 47 179-225 327-377 (559)
331 COG1875 NYN ribonuclease and A 95.7 0.073 1.6E-06 52.5 9.7 40 178-219 227-266 (436)
332 cd00227 CPT Chloramphenicol (C 95.7 0.0093 2E-07 54.0 3.5 25 199-223 3-27 (175)
333 TIGR00390 hslU ATP-dependent p 95.7 0.027 5.9E-07 57.3 7.0 51 175-225 12-74 (441)
334 COG4133 CcmA ABC-type transpor 95.7 0.1 2.2E-06 46.7 9.7 34 198-231 28-61 (209)
335 cd02028 UMPK_like Uridine mono 95.7 0.012 2.7E-07 53.4 4.2 26 200-225 1-26 (179)
336 cd01122 GP4d_helicase GP4d_hel 95.7 0.14 3E-06 50.0 12.0 38 196-233 28-66 (271)
337 PF00158 Sigma54_activat: Sigm 95.7 0.016 3.5E-07 52.0 4.8 46 177-222 1-46 (168)
338 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0092 2E-07 54.7 3.4 26 197-222 2-27 (188)
339 COG1102 Cmk Cytidylate kinase 95.7 0.0089 1.9E-07 51.8 2.9 24 200-223 2-25 (179)
340 PF00006 ATP-synt_ab: ATP synt 95.7 0.031 6.7E-07 52.1 6.8 26 198-223 15-40 (215)
341 PRK10923 glnG nitrogen regulat 95.7 0.25 5.5E-06 52.4 14.8 48 175-222 138-185 (469)
342 cd03283 ABC_MutS-like MutS-lik 95.7 0.08 1.7E-06 49.0 9.5 24 199-222 26-49 (199)
343 PRK13539 cytochrome c biogenes 95.6 0.054 1.2E-06 50.5 8.5 25 197-221 27-51 (207)
344 COG0055 AtpD F0F1-type ATP syn 95.6 0.022 4.8E-07 56.0 5.8 100 197-299 146-268 (468)
345 PRK03846 adenylylsulfate kinas 95.6 0.018 3.9E-07 53.3 5.1 37 196-232 22-58 (198)
346 COG0529 CysC Adenylylsulfate k 95.6 0.018 3.9E-07 50.8 4.6 37 196-232 21-57 (197)
347 PF03266 NTPase_1: NTPase; In 95.6 0.0095 2.1E-07 53.4 3.1 24 201-224 2-25 (168)
348 PRK05917 DNA polymerase III su 95.6 0.69 1.5E-05 45.1 16.0 127 184-331 6-154 (290)
349 PRK10867 signal recognition pa 95.6 0.1 2.2E-06 54.0 11.0 29 197-225 99-127 (433)
350 TIGR02012 tigrfam_recA protein 95.6 0.023 5.1E-07 56.2 6.0 48 186-233 42-90 (321)
351 cd03230 ABC_DR_subfamily_A Thi 95.6 0.042 9.1E-07 49.6 7.3 26 197-222 25-50 (173)
352 PHA02244 ATPase-like protein 95.6 0.011 2.4E-07 59.0 3.7 49 175-223 96-144 (383)
353 COG2805 PilT Tfp pilus assembl 95.6 0.11 2.3E-06 50.1 9.9 93 197-297 124-219 (353)
354 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.017 3.8E-07 54.3 4.8 24 197-220 30-53 (222)
355 KOG0738 AAA+-type ATPase [Post 95.6 0.14 3E-06 51.0 10.9 49 175-223 212-270 (491)
356 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.0089 1.9E-07 54.6 2.6 23 200-222 1-23 (183)
357 PRK05973 replicative DNA helic 95.5 0.024 5.2E-07 53.6 5.4 38 196-233 62-99 (237)
358 cd01135 V_A-ATPase_B V/A-type 95.5 0.091 2E-06 50.6 9.4 27 197-223 68-94 (276)
359 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.036 7.7E-07 55.0 6.7 51 175-225 61-115 (358)
360 PRK13947 shikimate kinase; Pro 95.5 0.011 2.3E-07 53.4 2.9 24 200-223 3-26 (171)
361 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.021 4.6E-07 50.6 4.9 117 198-319 25-145 (157)
362 PRK09280 F0F1 ATP synthase sub 95.5 0.071 1.5E-06 55.3 9.2 88 197-287 143-249 (463)
363 PRK09302 circadian clock prote 95.5 0.07 1.5E-06 57.2 9.7 120 184-311 259-406 (509)
364 PRK10436 hypothetical protein; 95.5 0.027 5.8E-07 58.9 6.2 106 178-296 200-307 (462)
365 cd01130 VirB11-like_ATPase Typ 95.4 0.012 2.6E-07 54.0 3.2 89 197-294 24-118 (186)
366 cd00984 DnaB_C DnaB helicase C 95.4 0.15 3.3E-06 48.7 11.1 38 196-233 11-49 (242)
367 PRK00409 recombination and DNA 95.4 0.013 2.8E-07 65.6 4.0 111 275-395 406-526 (782)
368 KOG3928 Mitochondrial ribosome 95.4 0.36 7.7E-06 48.5 13.4 58 322-379 402-460 (461)
369 CHL00206 ycf2 Ycf2; Provisiona 95.4 0.065 1.4E-06 63.7 9.6 27 196-222 1628-1654(2281)
370 COG2804 PulE Type II secretory 95.4 0.041 8.8E-07 56.9 7.2 112 184-312 247-359 (500)
371 cd00983 recA RecA is a bacter 95.4 0.028 6E-07 55.7 5.9 48 186-233 42-90 (325)
372 PRK12597 F0F1 ATP synthase sub 95.4 0.047 1E-06 56.8 7.7 40 197-236 142-181 (461)
373 smart00534 MUTSac ATPase domai 95.4 0.0099 2.1E-07 54.4 2.5 21 200-220 1-21 (185)
374 KOG1532 GTPase XAB1, interacts 95.4 0.019 4.1E-07 54.1 4.1 33 196-228 17-49 (366)
375 PF06745 KaiC: KaiC; InterPro 95.4 0.02 4.2E-07 54.3 4.5 47 187-233 8-55 (226)
376 cd02021 GntK Gluconate kinase 95.4 0.011 2.4E-07 52.0 2.5 23 200-222 1-23 (150)
377 PRK05201 hslU ATP-dependent pr 95.3 0.02 4.3E-07 58.2 4.6 51 175-225 15-77 (443)
378 PRK14528 adenylate kinase; Pro 95.3 0.052 1.1E-06 49.7 7.0 24 199-222 2-25 (186)
379 TIGR02525 plasmid_TraJ plasmid 95.3 0.04 8.7E-07 55.9 6.8 94 199-296 150-245 (372)
380 PF03205 MobB: Molybdopterin g 95.3 0.027 5.9E-07 48.8 4.8 35 199-233 1-36 (140)
381 TIGR01039 atpD ATP synthase, F 95.3 0.087 1.9E-06 54.5 9.2 41 197-237 142-182 (461)
382 PRK05439 pantothenate kinase; 95.3 0.024 5.2E-07 55.9 4.9 29 196-224 84-112 (311)
383 PRK15453 phosphoribulokinase; 95.3 0.026 5.6E-07 54.4 5.0 29 196-224 3-31 (290)
384 cd03217 ABC_FeS_Assembly ABC-t 95.3 0.066 1.4E-06 49.6 7.7 25 197-221 25-49 (200)
385 PF13245 AAA_19: Part of AAA d 95.3 0.017 3.8E-07 44.1 3.1 25 198-222 10-34 (76)
386 COG1136 SalX ABC-type antimicr 95.3 0.062 1.3E-06 50.2 7.3 60 266-328 150-215 (226)
387 PF02456 Adeno_IVa2: Adenoviru 95.3 1.2 2.6E-05 43.2 15.9 35 198-232 87-123 (369)
388 PRK09354 recA recombinase A; P 95.3 0.031 6.8E-07 55.8 5.7 48 186-233 47-95 (349)
389 cd03232 ABC_PDR_domain2 The pl 95.3 0.073 1.6E-06 49.0 7.9 25 197-221 32-56 (192)
390 PRK06217 hypothetical protein; 95.3 0.013 2.8E-07 53.5 2.8 24 200-223 3-26 (183)
391 PF13481 AAA_25: AAA domain; P 95.3 0.086 1.9E-06 48.4 8.3 27 198-224 32-58 (193)
392 cd02020 CMPK Cytidine monophos 95.2 0.013 2.9E-07 51.1 2.7 23 200-222 1-23 (147)
393 cd02024 NRK1 Nicotinamide ribo 95.2 0.013 2.7E-07 53.5 2.6 23 200-222 1-23 (187)
394 PRK14738 gmk guanylate kinase; 95.2 0.016 3.5E-07 54.0 3.4 28 194-221 9-36 (206)
395 cd03213 ABCG_EPDR ABCG transpo 95.2 0.073 1.6E-06 49.1 7.8 26 197-222 34-59 (194)
396 COG2884 FtsE Predicted ATPase 95.2 0.088 1.9E-06 47.2 7.7 52 267-320 146-203 (223)
397 COG1936 Predicted nucleotide k 95.2 0.013 2.9E-07 51.5 2.5 20 200-219 2-21 (180)
398 PRK09435 membrane ATPase/prote 95.2 0.042 9.2E-07 54.8 6.4 40 186-225 44-83 (332)
399 PF06068 TIP49: TIP49 C-termin 95.2 0.031 6.8E-07 55.5 5.4 57 175-231 24-83 (398)
400 PRK15115 response regulator Gl 95.2 0.39 8.4E-06 50.6 14.2 49 175-223 134-182 (444)
401 KOG1051 Chaperone HSP104 and r 95.2 0.16 3.4E-06 56.7 11.3 100 175-287 562-671 (898)
402 cd00071 GMPK Guanosine monopho 95.2 0.012 2.7E-07 50.8 2.3 26 200-225 1-26 (137)
403 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.4E-07 52.7 3.1 25 199-223 2-26 (179)
404 PRK05537 bifunctional sulfate 95.2 0.027 5.9E-07 60.7 5.3 50 175-224 369-418 (568)
405 cd02025 PanK Pantothenate kina 95.2 0.014 2.9E-07 55.1 2.7 25 200-224 1-25 (220)
406 cd02023 UMPK Uridine monophosp 95.2 0.013 2.8E-07 54.3 2.5 23 200-222 1-23 (198)
407 TIGR02858 spore_III_AA stage I 95.1 0.11 2.3E-06 50.5 8.8 112 198-316 111-231 (270)
408 TIGR03600 phage_DnaB phage rep 95.1 0.49 1.1E-05 49.4 14.5 72 177-256 174-246 (421)
409 PF00406 ADK: Adenylate kinase 95.1 0.027 5.9E-07 49.6 4.3 20 203-222 1-20 (151)
410 COG5635 Predicted NTPase (NACH 95.1 0.051 1.1E-06 61.7 7.6 135 198-337 222-371 (824)
411 PRK12339 2-phosphoglycerate ki 95.1 0.02 4.3E-07 52.8 3.4 25 198-222 3-27 (197)
412 TIGR02782 TrbB_P P-type conjug 95.1 0.058 1.3E-06 53.3 6.9 88 199-294 133-222 (299)
413 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.11 2.3E-06 49.4 8.3 51 266-318 147-203 (254)
414 PF06309 Torsin: Torsin; Inte 95.0 0.036 7.7E-07 46.4 4.5 49 175-223 25-78 (127)
415 cd03243 ABC_MutS_homologs The 95.0 0.015 3.2E-07 54.1 2.6 22 199-220 30-51 (202)
416 PF00625 Guanylate_kin: Guanyl 95.0 0.024 5.2E-07 51.7 3.8 35 198-232 2-36 (183)
417 cd00464 SK Shikimate kinase (S 95.0 0.018 4E-07 50.7 3.0 22 201-222 2-23 (154)
418 PRK10751 molybdopterin-guanine 95.0 0.039 8.4E-07 49.5 5.0 29 197-225 5-33 (173)
419 COG0563 Adk Adenylate kinase a 95.0 0.018 3.9E-07 52.1 2.9 23 200-222 2-24 (178)
420 KOG3347 Predicted nucleotide k 95.0 0.019 4.1E-07 49.0 2.8 23 199-221 8-30 (176)
421 PRK15424 propionate catabolism 95.0 0.082 1.8E-06 56.4 8.2 47 175-221 219-265 (538)
422 COG0714 MoxR-like ATPases [Gen 95.0 0.025 5.5E-07 56.9 4.3 49 175-227 24-72 (329)
423 TIGR02538 type_IV_pilB type IV 95.0 0.09 1.9E-06 56.9 8.7 101 183-296 304-405 (564)
424 KOG0066 eIF2-interacting prote 95.0 0.38 8.2E-06 48.6 12.1 32 190-221 605-636 (807)
425 PRK13949 shikimate kinase; Pro 95.0 0.02 4.2E-07 51.6 3.0 24 200-223 3-26 (169)
426 PRK14529 adenylate kinase; Pro 95.0 0.11 2.4E-06 48.7 8.1 23 201-223 3-25 (223)
427 COG1224 TIP49 DNA helicase TIP 94.9 0.049 1.1E-06 53.4 5.7 55 175-229 39-96 (450)
428 PLN03186 DNA repair protein RA 94.9 0.17 3.7E-06 50.9 9.8 49 185-233 110-164 (342)
429 PRK05342 clpX ATP-dependent pr 94.9 0.031 6.7E-07 57.7 4.7 50 175-224 71-134 (412)
430 PF13086 AAA_11: AAA domain; P 94.9 0.048 1E-06 51.6 5.8 36 183-222 6-41 (236)
431 PRK13948 shikimate kinase; Pro 94.9 0.022 4.7E-07 51.8 3.1 27 197-223 9-35 (182)
432 PRK06731 flhF flagellar biosyn 94.9 0.42 9.2E-06 46.3 12.1 35 198-232 75-109 (270)
433 PTZ00035 Rad51 protein; Provis 94.9 0.18 3.9E-06 50.7 10.0 38 185-222 105-142 (337)
434 KOG0927 Predicted transporter 94.9 0.07 1.5E-06 55.2 7.0 52 268-320 231-285 (614)
435 TIGR03880 KaiC_arch_3 KaiC dom 94.9 0.051 1.1E-06 51.4 5.8 48 186-233 4-51 (224)
436 cd01132 F1_ATPase_alpha F1 ATP 94.9 0.14 3.1E-06 49.3 8.7 38 197-236 68-106 (274)
437 TIGR01313 therm_gnt_kin carboh 94.9 0.017 3.7E-07 51.6 2.4 22 201-222 1-22 (163)
438 TIGR00455 apsK adenylylsulfate 94.9 0.074 1.6E-06 48.5 6.6 28 197-224 17-44 (184)
439 TIGR00750 lao LAO/AO transport 94.8 0.062 1.3E-06 53.3 6.4 39 187-225 23-61 (300)
440 PRK08972 fliI flagellum-specif 94.8 0.095 2.1E-06 53.9 7.8 25 197-221 161-185 (444)
441 PRK14530 adenylate kinase; Pro 94.8 0.023 4.9E-07 53.4 3.1 23 200-222 5-27 (215)
442 PF06414 Zeta_toxin: Zeta toxi 94.8 0.049 1.1E-06 50.5 5.3 96 196-299 13-116 (199)
443 COG0194 Gmk Guanylate kinase [ 94.8 0.029 6.4E-07 50.1 3.6 25 198-222 4-28 (191)
444 PRK13946 shikimate kinase; Pro 94.8 0.023 5E-07 51.9 3.1 25 198-222 10-34 (184)
445 COG0378 HypB Ni2+-binding GTPa 94.8 0.038 8.2E-07 49.7 4.2 35 198-232 13-47 (202)
446 PRK00300 gmk guanylate kinase; 94.8 0.024 5.2E-07 52.8 3.2 26 197-222 4-29 (205)
447 PRK10416 signal recognition pa 94.8 0.054 1.2E-06 53.9 5.8 29 197-225 113-141 (318)
448 cd01857 HSR1_MMR1 HSR1/MMR1. 94.8 0.35 7.5E-06 41.9 10.3 35 45-80 3-37 (141)
449 PRK13768 GTPase; Provisional 94.8 0.041 9E-07 53.0 4.8 34 199-232 3-36 (253)
450 TIGR02329 propionate_PrpR prop 94.7 0.092 2E-06 56.0 7.8 48 175-222 212-259 (526)
451 COG1428 Deoxynucleoside kinase 94.7 0.025 5.4E-07 51.6 3.0 26 198-223 4-29 (216)
452 PRK14527 adenylate kinase; Pro 94.7 0.026 5.7E-07 51.9 3.4 26 197-222 5-30 (191)
453 TIGR02788 VirB11 P-type DNA tr 94.7 0.051 1.1E-06 54.1 5.6 109 197-314 143-253 (308)
454 PRK10463 hydrogenase nickel in 94.7 0.057 1.2E-06 52.5 5.6 33 196-228 102-134 (290)
455 PRK08506 replicative DNA helic 94.7 0.32 6.9E-06 51.5 11.7 72 177-256 172-243 (472)
456 TIGR03263 guanyl_kin guanylate 94.7 0.021 4.5E-07 51.9 2.5 24 199-222 2-25 (180)
457 TIGR00959 ffh signal recogniti 94.7 0.32 6.9E-06 50.4 11.3 27 197-223 98-124 (428)
458 PRK14737 gmk guanylate kinase; 94.7 0.027 5.8E-07 51.5 3.1 26 197-222 3-28 (186)
459 PRK13975 thymidylate kinase; P 94.7 0.029 6.2E-07 51.8 3.4 26 199-224 3-28 (196)
460 TIGR03305 alt_F1F0_F1_bet alte 94.6 0.15 3.3E-06 52.8 8.8 27 197-223 137-163 (449)
461 PRK13765 ATP-dependent proteas 94.6 0.042 9.1E-07 59.7 5.0 56 175-234 31-87 (637)
462 PF13521 AAA_28: AAA domain; P 94.6 0.025 5.4E-07 50.5 2.8 21 201-221 2-22 (163)
463 TIGR02868 CydC thiol reductant 94.6 0.14 3.1E-06 55.2 9.1 26 196-221 359-384 (529)
464 PRK11174 cysteine/glutathione 94.6 0.14 3.1E-06 56.0 9.2 26 197-222 375-400 (588)
465 PF03029 ATP_bind_1: Conserved 94.6 0.033 7.2E-07 53.0 3.6 35 203-238 1-35 (238)
466 PLN02200 adenylate kinase fami 94.6 0.032 6.9E-07 53.1 3.5 26 197-222 42-67 (234)
467 PLN02674 adenylate kinase 94.6 0.13 2.7E-06 49.0 7.5 25 198-222 31-55 (244)
468 COG1419 FlhF Flagellar GTP-bin 94.6 0.19 4.1E-06 50.8 9.0 35 198-232 203-239 (407)
469 TIGR00176 mobB molybdopterin-g 94.5 0.041 8.9E-07 48.6 3.9 26 200-225 1-26 (155)
470 PF03796 DnaB_C: DnaB-like hel 94.5 0.29 6.2E-06 47.4 10.2 65 186-258 8-73 (259)
471 COG3640 CooC CO dehydrogenase 94.5 0.073 1.6E-06 49.3 5.5 36 200-235 2-37 (255)
472 PRK14721 flhF flagellar biosyn 94.5 0.42 9.2E-06 49.3 11.7 26 197-222 190-215 (420)
473 PRK13833 conjugal transfer pro 94.5 0.11 2.4E-06 51.7 7.3 86 199-294 145-233 (323)
474 PHA02774 E1; Provisional 94.5 0.13 2.8E-06 54.4 8.1 41 182-223 419-459 (613)
475 TIGR02768 TraA_Ti Ti-type conj 94.5 0.19 4E-06 56.3 9.9 27 199-225 369-395 (744)
476 cd03282 ABC_MSH4_euk MutS4 hom 94.5 0.2 4.3E-06 46.5 8.6 25 197-221 28-52 (204)
477 TIGR01818 ntrC nitrogen regula 94.5 0.49 1.1E-05 50.1 12.8 49 175-223 134-182 (463)
478 KOG1350 F0F1-type ATP synthase 94.5 0.29 6.3E-06 47.1 9.6 122 175-300 163-319 (521)
479 PF02367 UPF0079: Uncharacteri 94.5 0.044 9.6E-07 46.0 3.8 27 196-222 13-39 (123)
480 PRK05057 aroK shikimate kinase 94.5 0.031 6.7E-07 50.4 3.1 25 198-222 4-28 (172)
481 TIGR00764 lon_rel lon-related 94.5 0.072 1.6E-06 58.0 6.4 57 175-235 18-75 (608)
482 PRK14493 putative bifunctional 94.5 0.047 1E-06 53.1 4.5 34 199-233 2-35 (274)
483 TIGR00554 panK_bact pantothena 94.5 0.058 1.3E-06 52.8 5.1 28 196-223 60-87 (290)
484 PF03193 DUF258: Protein of un 94.4 0.052 1.1E-06 47.9 4.3 36 181-221 23-58 (161)
485 cd03285 ABC_MSH2_euk MutS2 hom 94.4 0.023 5.1E-07 53.5 2.3 25 197-221 29-53 (222)
486 COG1124 DppF ABC-type dipeptid 94.4 0.036 7.8E-07 51.7 3.4 26 196-221 31-56 (252)
487 PF00154 RecA: recA bacterial 94.4 0.24 5.3E-06 49.0 9.4 49 185-233 39-88 (322)
488 PRK12678 transcription termina 94.4 0.091 2E-06 55.4 6.6 41 197-237 415-456 (672)
489 TIGR00382 clpX endopeptidase C 94.4 0.05 1.1E-06 55.9 4.7 50 175-224 77-142 (413)
490 PF05970 PIF1: PIF1-like helic 94.4 0.1 2.2E-06 53.3 6.9 34 197-230 21-54 (364)
491 PF08477 Miro: Miro-like prote 94.4 0.034 7.4E-07 46.5 2.9 21 201-221 2-22 (119)
492 PRK14531 adenylate kinase; Pro 94.4 0.036 7.8E-07 50.6 3.3 24 199-222 3-26 (183)
493 cd00820 PEPCK_HprK Phosphoenol 94.3 0.039 8.6E-07 45.0 3.1 23 197-219 14-36 (107)
494 PRK04182 cytidylate kinase; Pr 94.3 0.033 7.3E-07 50.5 3.0 23 200-222 2-24 (180)
495 PRK06761 hypothetical protein; 94.3 0.049 1.1E-06 52.9 4.2 27 199-225 4-30 (282)
496 TIGR01447 recD exodeoxyribonuc 94.3 0.26 5.6E-06 53.4 10.2 28 198-225 160-187 (586)
497 PLN02924 thymidylate kinase 94.3 0.22 4.8E-06 46.8 8.5 29 197-225 15-43 (220)
498 COG2401 ABC-type ATPase fused 94.3 0.1 2.2E-06 52.4 6.3 26 197-222 408-433 (593)
499 COG0703 AroK Shikimate kinase 94.3 0.036 7.9E-07 49.2 3.0 28 199-226 3-30 (172)
500 PRK03731 aroL shikimate kinase 94.3 0.035 7.5E-07 50.0 3.0 23 200-222 4-26 (171)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-88 Score=780.75 Aligned_cols=530 Identities=39% Similarity=0.666 Sum_probs=475.4
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHHh
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDDQLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKILD 80 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~ 80 (557)
.||||||+|+|+|++|++||+++|.++||.+|.|+++++|+.+.+++.+||++|+++|||||++|++|+||++||++|++
T Consensus 13 ~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~ 92 (1153)
T PLN03210 13 YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVR 92 (1153)
T ss_pred CcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCceEEeEEEEeccccccccCCChHHHHHHHHHhhhhchhhHHHHHHHhHhhhcccCccccCCCcchhhhHHHHHh
Q 008685 81 CRKEYAQIVIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSVKLQTWRNALREAASLSGFHSLNIRPESKLVKEVVNH 160 (557)
Q Consensus 81 ~~~~~~~~v~Pv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~ 160 (557)
|+++.+++|+||||+|+|++||+|+|.|+++|.++..+. ..+++++|++||++++++.|+++.....|+++|++|+++
T Consensus 93 ~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~ 170 (1153)
T PLN03210 93 CKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIAND 170 (1153)
T ss_pred hhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999987653 346799999999999999999998766699999999999
Q ss_pred hhcccccccCCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEec--ccc
Q 008685 161 ILKRLATVFPCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNV--REE 238 (557)
Q Consensus 161 ~~~~~~~~~p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~ 238 (557)
+.+++...++... +.+|||++++++|..+|..+.+++++|+|+||||+||||||+++|+++..+|+..+|+... ...
T Consensus 171 v~~~l~~~~~~~~-~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 171 VLGKLNLTPSNDF-EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred HHHhhccccCccc-ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 9999987766655 8899999999999999987777899999999999999999999999999999999887532 110
Q ss_pred c---c-----CCCChHHHHHHHHHHHhcCCcccc-CHHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEE
Q 008685 239 S---V-----RPGGLACLQLKLLSKLLQDNNVIL-NIALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIII 309 (557)
Q Consensus 239 ~---~-----~~~~~~~l~~~ll~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~Iii 309 (557)
. . .......++..++..+....+... ....+++++.++|+||||||||+..+++.+.....++++|++|||
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEE
Confidence 0 0 001123455666666665544333 356788999999999999999999999999887788899999999
Q ss_pred EeCChhhhhccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHH
Q 008685 310 TTRDKQVLRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKS 389 (557)
Q Consensus 310 TsR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~ 389 (557)
|||+..++..++....|+++.|+.++|++||+++||+...+++.+.+++.+|+++|+|+||||+++|+.|++++..+|..
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 99999998877777899999999999999999999988777777889999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHhhcCCCh-hhHHHHhhhhcccCCCCHHHHHHHHHhcCCchhhcHHHHhhCCCeEEccCCeE
Q 008685 390 AINKLKSILHPSIQEILKISYDGLDD-KEKNIFLDVACFFKGEDVYSVMKFLDASGFYPEIGISVLVDKSLIVISNNDRI 468 (557)
Q Consensus 390 ~l~~l~~~~~~~i~~~l~~s~~~L~~-~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~ 468 (557)
.+.++....+..+..+|+.||+.|++ .+|.||+++|||+.+.+.+.+..++...++.+..+++.|+++||++.. .+++
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~ 488 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIV 488 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeE
Confidence 99999988888999999999999986 599999999999999999998888888888888899999999999987 6789
Q ss_pred EcCHHHHHHHHHHHhhhcCCCCCcccccCchhHHHHhhcCccc-----EEEec-----cccChHHHhccccccccc
Q 008685 469 TMHDLLQELGRDIVLQESVNPGNRSRLWHHEDIYGVLTYNMVS-----ILLGL-----LFWNNIALTNFLYKYLYK 534 (557)
Q Consensus 469 ~mH~lvr~~a~~~~~~e~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~l~~-----~~~~~~~~~~~~~lr~~~ 534 (557)
.||+++|++|++++++++..|++|+++|.+.+|++++.+++++ |++|+ +.++.++|.+|.+|++++
T Consensus 489 ~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 9999999999999999887899999999999999999999886 77886 667889999999887653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-47 Score=417.41 Aligned_cols=367 Identities=27% Similarity=0.358 Sum_probs=293.6
Q ss_pred cccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH---hhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 178 VGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK---ISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 178 vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
||.+..++.+.+.|...+ .++++|+||||+||||||++++++ +..+|+.++|+. +|. ......++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHH
Confidence 999999999999998653 389999999999999999999987 457899999998 444 6778899999999
Q ss_pred HHhcCCcccc------CHHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhhc-cccceEEE
Q 008685 255 KLLQDNNVIL------NIALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLRN-WGVKKIYE 327 (557)
Q Consensus 255 ~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~-~~~~~~~~ 327 (557)
.+........ ....+.+.|+++|++|||||||+..+|+.+...++....||+|++|||+..++.. ++....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 8776433222 1677888999999999999999999999999998887889999999999999988 77788999
Q ss_pred cccCCHHHHHHHHHhccccCC-CCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCC-CHHHHHHHHHhhhcC-------C
Q 008685 328 MEALEYDHALELFSRHAFKQI-HPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGR-EKEVWKSAINKLKSI-------L 398 (557)
Q Consensus 328 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-~~~~w~~~l~~l~~~-------~ 398 (557)
++.|+.+|||.||++.++... ...+..++++++++++|+|+|||+..+|+.|+.+ +..+|+.+...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998753 3334479999999999999999999999999985 666899999987654 1
Q ss_pred hhhHHHHHHHhhcCCChhhHHHHhhhhcccCC--CCHHHHHHHHHhcCCch------------hhcHHHHhhCCCeEEcc
Q 008685 399 HPSIQEILKISYDGLDDKEKNIFLDVACFFKG--EDVYSVMKFLDASGFYP------------EIGISVLVDKSLIVISN 464 (557)
Q Consensus 399 ~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLl~~~~ 464 (557)
.+.+..++..||+.|+++.|.||+|||+||++ ++.+.+..+|.++|+.. ..++++|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999 57899999999999653 34699999999999764
Q ss_pred C----CeEEcCHHHHHHHHHHHh-----hhc---CCC------------CCcccc-cCchhHHHHhhcCccc----EEE-
Q 008685 465 N----DRITMHDLLQELGRDIVL-----QES---VNP------------GNRSRL-WHHEDIYGVLTYNMVS----ILL- 514 (557)
Q Consensus 465 ~----~~~~mH~lvr~~a~~~~~-----~e~---~~~------------~~~~~l-~~~~~~~~~l~~~~~~----~~l- 514 (557)
. ..+.|||+||++|..++. +++ ..+ ...+++ +...++.+...+.... .++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEe
Confidence 2 579999999999999999 442 110 111222 1222333333222211 111
Q ss_pred e----ccccChHHHhccccccccccccccccCCcceeEeccccCCC
Q 008685 515 G----LLFWNNIALTNFLYKYLYKLEMMSFRINRRLTVIENTKTGN 556 (557)
Q Consensus 515 ~----~~~~~~~~~~~~~~lr~~~L~~l~l~~~~~~~~l~~~~~~~ 556 (557)
+ +..++..+|..|+ .|+||||++|.++.+||+..++|
T Consensus 554 ~n~~~l~~is~~ff~~m~-----~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLP-----LLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred ecchhhhhcCHHHHhhCc-----ceEEEECCCCCccCcCChHHhhh
Confidence 1 1334556677666 66888888888888888887754
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=275.67 Aligned_cols=149 Identities=28% Similarity=0.514 Sum_probs=135.0
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
.||||||+|+|++++|++||+++|+++||+||+|+ ++.+|+.+.++|.+||++|+++|||||++|++|+||++||.+|+
T Consensus 27 yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~ 106 (187)
T PLN03194 27 CDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIM 106 (187)
T ss_pred CcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHH
Confidence 59999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhcccCceEEeEEEEecccccccc-CCChHHHHHHHHHhhhhchhhHHHHHHHhHhhhcccCccccCC-CcchhhhHHH
Q 008685 80 DCRKEYAQIVIPVFYRVDPSDVRNQ-TGSFGDSFSKLEERFKENSVKLQTWRNALREAASLSGFHSLNI-RPESKLVKEV 157 (557)
Q Consensus 80 ~~~~~~~~~v~Pv~~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~-~~e~~~i~~i 157 (557)
++. ..|+||||+|+|++||+| .|.. ..+++++|+.||++++++.|+++... ..|++++++|
T Consensus 107 e~~----~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~i 169 (187)
T PLN03194 107 ESK----KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMA 169 (187)
T ss_pred HcC----CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHH
Confidence 864 469999999999999997 4431 24689999999999999999977542 3499999999
Q ss_pred HHhhhcccc
Q 008685 158 VNHILKRLA 166 (557)
Q Consensus 158 ~~~~~~~~~ 166 (557)
++.+.+.+.
T Consensus 170 v~~v~k~l~ 178 (187)
T PLN03194 170 SDAVIKNLI 178 (187)
T ss_pred HHHHHHHHH
Confidence 999887653
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.8e-38 Score=313.15 Aligned_cols=264 Identities=30% Similarity=0.473 Sum_probs=206.7
Q ss_pred cchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH--hhccCCceEEEEeccccccCCCChHHHHHHHHHHHh
Q 008685 180 VESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK--ISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLL 257 (557)
Q Consensus 180 R~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 257 (557)
||+++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+.... ......+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~-----~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK-----NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc-----cccccccccccccccc
Confidence 789999999999875578999999999999999999999988 788999999987443 3344777788888877
Q ss_pred cCCccc---cC----HHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhhcccc-ceEEEcc
Q 008685 258 QDNNVI---LN----IALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLRNWGV-KKIYEME 329 (557)
Q Consensus 258 ~~~~~~---~~----~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~-~~~~~l~ 329 (557)
...... .+ ...+.+.+.++++||||||||+...++.+...++....|++||+|||+..++...+. ...++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 663221 12 678888899999999999999999998888777666789999999999988776654 6789999
Q ss_pred cCCHHHHHHHHHhccccCC-CCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCC-CHHHHHHHHHhhhcCC------hhh
Q 008685 330 ALEYDHALELFSRHAFKQI-HPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGR-EKEVWKSAINKLKSIL------HPS 401 (557)
Q Consensus 330 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-~~~~w~~~l~~l~~~~------~~~ 401 (557)
+|+.++|++||.+.++... ...+..++.+++|+++|+|+||||+++|++|+.+ +..+|...++.+.... ..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987655 3344557889999999999999999999999542 5567888887755432 467
Q ss_pred HHHHHHHhhcCCChhhHHHHhhhhcccCC--CCHHHHHHHHHhcCCchh
Q 008685 402 IQEILKISYDGLDDKEKNIFLDVACFFKG--EDVYSVMKFLDASGFYPE 448 (557)
Q Consensus 402 i~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~ 448 (557)
+..++..||+.|+++.|.||++||+||.+ ++.+.+..+|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999988 569999999999877643
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.84 E-value=3.1e-22 Score=175.35 Aligned_cols=132 Identities=32% Similarity=0.578 Sum_probs=112.3
Q ss_pred EEEecccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 3 FFLSFRGEDTRDNFASHLFSALSQK--SIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 3 vFis~~~~d~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
|||||++.|.+.+|+.+|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999555568999999999999 99999998 99999999999999999999999999999999999999999999
Q ss_pred hhhcccC--ceEEeEEEEecccccc-ccCCChHHHHHHHHHhhhhc--hhhHHHHHHHhH
Q 008685 80 DCRKEYA--QIVIPVFYRVDPSDVR-NQTGSFGDSFSKLEERFKEN--SVKLQTWRNALR 134 (557)
Q Consensus 80 ~~~~~~~--~~v~Pv~~~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 134 (557)
++....+ ..|+||||++.+.+++ .+.+.+...+........+. ..+..-|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 7999999999999999 68888887777655555443 456778887653
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.81 E-value=1.6e-19 Score=158.49 Aligned_cols=135 Identities=39% Similarity=0.643 Sum_probs=111.0
Q ss_pred CeEEEeccc-ccccCchHHHHHHHHhhCCCceEeeCCCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 1 MMFFLSFRG-EDTRDNFASHLFSALSQKSIETFIDDQLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 1 ~dvFis~~~-~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
.||||||++ ++....|+.+|...|...|+.+|.|+... |.....+|.++|++|+++|+|+|++|+.|.||..|+..++
T Consensus 2 ~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~-~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~ 80 (140)
T smart00255 2 YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP-GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80 (140)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc-ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence 599999999 45557899999999999999999997433 3333349999999999999999999999999999999998
Q ss_pred hhhcc-cCceEEeEEEEeccccccccCCChHHHHHHHHHhhhhchhhHHHHHHHhHhhh
Q 008685 80 DCRKE-YAQIVIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSVKLQTWRNALREAA 137 (557)
Q Consensus 80 ~~~~~-~~~~v~Pv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 137 (557)
..... ....|+||+++..|..+..+.+.+...+..+.....+...+ ..|+..+..++
T Consensus 81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 87754 56799999999888889999999999888774444433322 68988877654
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.72 E-value=1.4e-15 Score=174.63 Aligned_cols=291 Identities=15% Similarity=0.169 Sum_probs=186.6
Q ss_pred cCCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHH
Q 008685 169 FPCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 169 ~p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 248 (557)
+|..+ ..+|-|+..++.|... ...+++.|+|++|.||||++.++.+. ++.++|+. .... ..+...+
T Consensus 9 ~p~~~-~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~---d~~~~~f 74 (903)
T PRK04841 9 RPVRL-HNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDES---DNQPERF 74 (903)
T ss_pred CCCCc-cccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCcc---cCCHHHH
Confidence 34444 7889999777766532 35789999999999999999998864 23678885 3222 2333444
Q ss_pred HHHHHHHHhcCCcc------------c-cC----HHHHHHHHc--cCceEEEEcCCCC---HH---HHHHHhccCCCCCC
Q 008685 249 QLKLLSKLLQDNNV------------I-LN----IALSFRRLS--RRKVLIVFDDVSC---FN---QIESLIGSLDWFTP 303 (557)
Q Consensus 249 ~~~ll~~~~~~~~~------------~-~~----~~~l~~~l~--~k~~LlVlDdv~~---~~---~~~~l~~~l~~~~~ 303 (557)
...++..+...... . .. ...+...+. +.+++|||||+.. .. .+..++.. ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 44444444211100 0 11 122222332 6789999999943 22 23333333 356
Q ss_pred ceEEEEEeCChhhhh--cc-ccceEEEcc----cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 304 RSTIIITTRDKQVLR--NW-GVKKIYEME----ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 304 ~~~IiiTsR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
+.++|||||...-.. .+ ......++. +|+.+|+.++|....+.. ...+.+.+|++.|+|+|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHH
Confidence 788999999852221 11 112344555 999999999998765322 225678899999999999999998
Q ss_pred hhhcCCCHHHHHHHHHhhhcCChhhHHHHHHH-hhcCCChhhHHHHhhhhcccCCCCHHHHHHHHHhcCCchhhcHHHHh
Q 008685 377 CFLFGREKEVWKSAINKLKSILHPSIQEILKI-SYDGLDDKEKNIFLDVACFFKGEDVYSVMKFLDASGFYPEIGISVLV 455 (557)
Q Consensus 377 ~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~ 455 (557)
..+...... .......+....+..+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+. ......++.|.
T Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~ 302 (903)
T PRK04841 227 LSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELE 302 (903)
T ss_pred HHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHH
Confidence 776543210 0111112211123446665544 48999999999999999986 7787766666542 23467899999
Q ss_pred hCCCeEE-cc--CCeEEcCHHHHHHHHHHHhhh
Q 008685 456 DKSLIVI-SN--NDRITMHDLLQELGRDIVLQE 485 (557)
Q Consensus 456 ~~sLl~~-~~--~~~~~mH~lvr~~a~~~~~~e 485 (557)
+.+++.. .+ ...|++|++++++.+..+..+
T Consensus 303 ~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 303 RQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9999753 22 236999999999999887544
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.66 E-value=2.3e-17 Score=136.06 Aligned_cols=92 Identities=32% Similarity=0.576 Sum_probs=77.6
Q ss_pred EEEecccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHHhhh
Q 008685 3 FFLSFRGEDTRDNFASHLFSALSQKSIETFIDDQLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKILDCR 82 (557)
Q Consensus 3 vFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~~~ 82 (557)
|||||+++| ..|+.+|...|+++|+++|.|.++.+|+.+.++|.++|++|+.+|+++|++|..|+||..|+..+..
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6699999999999999999999999999999999999999999999999999999999999998843
Q ss_pred cccCceEEeEEEEecccccc
Q 008685 83 KEYAQIVIPVFYRVDPSDVR 102 (557)
Q Consensus 83 ~~~~~~v~Pv~~~v~p~~vr 102 (557)
.+..|+||. +++.++.
T Consensus 77 --~~~~iipv~--~~~~~~p 92 (102)
T PF13676_consen 77 --RGKPIIPVR--LDPCELP 92 (102)
T ss_dssp --TSESEEEEE--CSGGGS-
T ss_pred --CCCEEEEEE--ECCcCCC
Confidence 445799995 5555443
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=160.75 Aligned_cols=325 Identities=15% Similarity=0.189 Sum_probs=197.7
Q ss_pred CccccchhHHHHHHhhccc-CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEec-cccccCCCChHHHHHHHH
Q 008685 176 QLVGVESRVEEIESLLGVE-WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNV-REESVRPGGLACLQLKLL 253 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~l~~~ll 253 (557)
+++||+.+++.|...+... .....++.+.|.+|||||+|+.+|...+.+++...+--... ......-..+....+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 4799999999999998763 34577999999999999999999999987662211110000 000000112222233333
Q ss_pred HHHhcCCcccc-------------------C-------------------------------HHHHHHHH-ccCceEEEE
Q 008685 254 SKLLQDNNVIL-------------------N-------------------------------IALSFRRL-SRRKVLIVF 282 (557)
Q Consensus 254 ~~~~~~~~~~~-------------------~-------------------------------~~~l~~~l-~~k~~LlVl 282 (557)
.++..+.+... + ...+.... +.+|.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 33221111000 0 11111222 356999999
Q ss_pred cCC-CCHHH----HHHHhccCC--CC-CCceEEEEEeCCh--hhhhccccceEEEcccCCHHHHHHHHHhccccCCCCCC
Q 008685 283 DDV-SCFNQ----IESLIGSLD--WF-TPRSTIIITTRDK--QVLRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAV 352 (557)
Q Consensus 283 Ddv-~~~~~----~~~l~~~l~--~~-~~~~~IiiTsR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 352 (557)
||+ |-+.. ++.+..... .+ ......+.|.+.. .+.......+.+.|.||+..+...+...........+
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999 65443 333333321 00 0011122222222 1122223457899999999999999998875433222
Q ss_pred ChHHHHHHHHHHcCCCchhhHhhhhhhcCC-------CHHHHHHHHHhhhcCC-hhhHHHHHHHhhcCCChhhHHHHhhh
Q 008685 353 GYEELSSKVMEYAQGVPLALKVLGCFLFGR-------EKEVWKSAINKLKSIL-HPSIQEILKISYDGLDDKEKNIFLDV 424 (557)
Q Consensus 353 ~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~k~~l~~l 424 (557)
.+....|++++.|+|+++.++-..+... +...|..-...+.... .+.+.+.+...++.||...|+++...
T Consensus 240 --~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 240 --APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred --chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5778999999999999999999888653 2334444333332211 12356678899999999999999999
Q ss_pred hcccCCCCHHHHHHHHHhcCCchhhcHHHHhhCCCeEEcc--------CCeE---EcCHHHHHHHHHHHhhhcCCCCCcc
Q 008685 425 ACFFKGEDVYSVMKFLDASGFYPEIGISVLVDKSLIVISN--------NDRI---TMHDLLQELGRDIVLQESVNPGNRS 493 (557)
Q Consensus 425 a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~~--------~~~~---~mH~lvr~~a~~~~~~e~~~~~~~~ 493 (557)
||++..|+.+.|..++..........+......+++.+.+ .... ..|+++|+.+....-+. +
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-------~ 390 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-------Q 390 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh-------h
Confidence 9999999999999998764444444455555555555421 1112 46888887776665443 2
Q ss_pred cccCchhHHHHhhcCcc
Q 008685 494 RLWHHEDIYGVLTYNMV 510 (557)
Q Consensus 494 ~l~~~~~~~~~l~~~~~ 510 (557)
|-..|..|..++..+..
T Consensus 391 rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 391 RQYLHLRIGQLLEQNIP 407 (849)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33457778777776654
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.54 E-value=1.3e-12 Score=137.80 Aligned_cols=290 Identities=15% Similarity=0.156 Sum_probs=190.5
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHH
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQ 249 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 249 (557)
|..+ .+.|-|...++.|.+. .+.+.+.|..|+|.|||||+.+++. ....-..+.|+..... ..+.....
T Consensus 15 P~~~-~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~----dndp~rF~ 83 (894)
T COG2909 15 PVRP-DNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES----DNDPARFL 83 (894)
T ss_pred CCCc-ccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc----cCCHHHHH
Confidence 3344 7788888766666553 3679999999999999999999998 4555678889873332 44555555
Q ss_pred HHHHHHHhcCCcccc-------------C----HHHHHHHHc--cCceEEEEcCCC---CH---HHHHHHhccCCCCCCc
Q 008685 250 LKLLSKLLQDNNVIL-------------N----IALSFRRLS--RRKVLIVFDDVS---CF---NQIESLIGSLDWFTPR 304 (557)
Q Consensus 250 ~~ll~~~~~~~~~~~-------------~----~~~l~~~l~--~k~~LlVlDdv~---~~---~~~~~l~~~l~~~~~~ 304 (557)
..++..+........ . .+.+...+. .+++.+||||.. ++ ..++.++.. ..++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCC
Confidence 566555543221111 1 222223222 468999999982 22 335555544 3578
Q ss_pred eEEEEEeCChhhhhcc---ccceEEEcc----cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 305 STIIITTRDKQVLRNW---GVKKIYEME----ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~~---~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
..+|+|||...-+..- -.....+++ .|+.+|+.++|...... +.....++.+.+.++|.+-|+..++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHH
Confidence 8999999987432211 012233443 58999999999987622 22256789999999999999999988
Q ss_pred hhcCC-CHHHHHHHHHhhhcCChhhHHH-HHHHhhcCCChhhHHHHhhhhcccCCCCHHHHHHHHHhcCCchhhcHHHHh
Q 008685 378 FLFGR-EKEVWKSAINKLKSILHPSIQE-ILKISYDGLDDKEKNIFLDVACFFKGEDVYSVMKFLDASGFYPEIGISVLV 455 (557)
Q Consensus 378 ~L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~ 455 (557)
.+++. +.+.-.. .+... ...+.+ ..+.-++.||++.|..++.+|++.. |+-+....+.+. ......+++|.
T Consensus 236 a~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~ 308 (894)
T COG2909 236 ALRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELE 308 (894)
T ss_pred HccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHH
Confidence 77742 3322211 11111 122322 3455688999999999999999853 344444444432 23445699999
Q ss_pred hCCCeEE---ccCCeEEcCHHHHHHHHHHHhhh
Q 008685 456 DKSLIVI---SNNDRITMHDLLQELGRDIVLQE 485 (557)
Q Consensus 456 ~~sLl~~---~~~~~~~mH~lvr~~a~~~~~~e 485 (557)
+++|+-. ++++.|+.|.++.+|.+...+.+
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9999873 23567999999999999988876
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=3.3e-11 Score=124.93 Aligned_cols=279 Identities=16% Similarity=0.133 Sum_probs=162.9
Q ss_pred CCccccchhHHHHHHhhccc--CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE--WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
+.|+||++++++|...+... ......+.|+|++|+|||++++.+++.+........|+. +. ... ......+...+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~-in-~~~-~~~~~~~~~~i 106 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVY-IN-CQI-DRTRYAIFSEI 106 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE-EE-CCc-CCCHHHHHHHH
Confidence 78999999999999988542 233456889999999999999999998766542222222 11 111 23455666777
Q ss_pred HHHHhcCCcccc--C----HHHHHHHHc--cCceEEEEcCCCCHH------HHHHHhccCCCCC-CceEEEEEeCChhhh
Q 008685 253 LSKLLQDNNVIL--N----IALSFRRLS--RRKVLIVFDDVSCFN------QIESLIGSLDWFT-PRSTIIITTRDKQVL 317 (557)
Q Consensus 253 l~~~~~~~~~~~--~----~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~-~~~~IiiTsR~~~~~ 317 (557)
+.++........ + ...+.+.+. +++.+||||+++... .+..+........ .+..+|.++.+..+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 777654221111 2 334444444 456899999996532 3444443322111 133356666654332
Q ss_pred hccc-------cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHc----CCCchhhHhhhhhh-----cC
Q 008685 318 RNWG-------VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYA----QGVPLALKVLGCFL-----FG 381 (557)
Q Consensus 318 ~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~a~~L-----~~ 381 (557)
.... ....+.+++++.++..+++..++.....+....++..+.+++.+ |..+.|+..+-... .+
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 12467999999999999998876322111122245555565555 44666766653321 11
Q ss_pred ---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhccc----CCCCHHHHHHH----HHhcCCc----
Q 008685 382 ---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFF----KGEDVYSVMKF----LDASGFY---- 446 (557)
Q Consensus 382 ---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~~~l~~~----~~~~~~~---- 446 (557)
-+.+....+.... -...+...+..||..+|.++..++... ..+....+... ....+..
T Consensus 267 ~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~ 339 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTH 339 (394)
T ss_pred CCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcH
Confidence 1344444444433 123345568899999999988777543 23444444322 2222222
Q ss_pred --hhhcHHHHhhCCCeEEc
Q 008685 447 --PEIGISVLVDKSLIVIS 463 (557)
Q Consensus 447 --~~~~l~~L~~~sLl~~~ 463 (557)
...+++.|...|||...
T Consensus 340 ~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 340 TRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 23479999999999853
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=3.8e-12 Score=127.93 Aligned_cols=258 Identities=16% Similarity=0.153 Sum_probs=157.2
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. ... .... .....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~----~~~~-~~l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA----LEKP-GDLAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc----ccCh-HHHHH
Confidence 6799999999999887753 2234567899999999999999999998754321 111 100 0000 11111
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH--HHHHHhccCC-------------------CCCCceEEEEE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN--QIESLIGSLD-------------------WFTPRSTIIIT 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~~~~IiiT 310 (557)
++. .+ ++.-+|++|+++... ..+.+...+. ...+.+-|..|
T Consensus 96 ~l~-----------------~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 96 ILT-----------------NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred HHH-----------------hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 111 11 234577777774321 1111111100 00123445566
Q ss_pred eCChhhhhcc-c-cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHH
Q 008685 311 TRDKQVLRNW-G-VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWK 388 (557)
Q Consensus 311 sR~~~~~~~~-~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~ 388 (557)
++...+...+ . ....+++++++.++..+++...+...... ..++.+..|++.|+|.|-.+..+...+ ..|.
T Consensus 158 ~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a 230 (328)
T PRK00080 158 TRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFA 230 (328)
T ss_pred CCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHH
Confidence 6654332221 1 13468999999999999999877543322 336789999999999996655554432 1121
Q ss_pred HHHHhhhcCCh---hhHHHHHHHhhcCCChhhHHHHh-hhhcccCC-CCHHHHHHHHHhcCCchhhcHH-HHhhCCCeEE
Q 008685 389 SAINKLKSILH---PSIQEILKISYDGLDDKEKNIFL-DVACFFKG-EDVYSVMKFLDASGFYPEIGIS-VLVDKSLIVI 462 (557)
Q Consensus 389 ~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~k~~l~-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~ 462 (557)
.... -..... ......+...+..|++..+..+. .+..|..+ +..+.+...++.+....+..++ .|++.+||..
T Consensus 231 ~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 231 QVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCccc
Confidence 1110 011111 12233455567789998888886 66677654 7889999999887777787888 9999999986
Q ss_pred ccCCe
Q 008685 463 SNNDR 467 (557)
Q Consensus 463 ~~~~~ 467 (557)
...|+
T Consensus 310 ~~~gr 314 (328)
T PRK00080 310 TPRGR 314 (328)
T ss_pred CCchH
Confidence 65554
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.41 E-value=5.3e-12 Score=126.03 Aligned_cols=258 Identities=19% Similarity=0.187 Sum_probs=154.1
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|||+++.+++|..++.. .....+.+.|+|++|+|||+||+.+++.+...+. ... ... ......+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~----~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPA----LEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cch----hcCchhHH-H
Confidence 4699999999999988853 1233556889999999999999999998754321 111 100 01111111 1
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCC-------------------CCCCceEEEEE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLD-------------------WFTPRSTIIIT 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~-------------------~~~~~~~IiiT 310 (557)
.+..+ +...+|++|++... ...+.+...+. ...+.+-|..|
T Consensus 75 ~l~~~------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTNL------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHhc------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11111 12346677766321 11122211110 01234445566
Q ss_pred eCChhhhhcc-c-cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHH
Q 008685 311 TRDKQVLRNW-G-VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWK 388 (557)
Q Consensus 311 sR~~~~~~~~-~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~ 388 (557)
++...+.... . ....+.+++++.++..+++...+..... ...++.+..|++.|+|.|-.+..++..+ |.
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~ 207 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RD 207 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HH
Confidence 6654332211 1 1346799999999999999987754322 2336778899999999997766555432 11
Q ss_pred HHH-HhhhcCChh---hHHHHHHHhhcCCChhhHHHHh-hhhcccCC-CCHHHHHHHHHhcCCchhhcHH-HHhhCCCeE
Q 008685 389 SAI-NKLKSILHP---SIQEILKISYDGLDDKEKNIFL-DVACFFKG-EDVYSVMKFLDASGFYPEIGIS-VLVDKSLIV 461 (557)
Q Consensus 389 ~~l-~~l~~~~~~---~i~~~l~~s~~~L~~~~k~~l~-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~ 461 (557)
... ........+ .....+...+..|++.++..+. .++.+..+ ++.+.+...++.+....+..++ .|++++||.
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 110 000111111 1222245567888888888777 44666543 7888888888888777888888 699999998
Q ss_pred EccCCeE
Q 008685 462 ISNNDRI 468 (557)
Q Consensus 462 ~~~~~~~ 468 (557)
....|++
T Consensus 288 ~~~~g~~ 294 (305)
T TIGR00635 288 RTPRGRI 294 (305)
T ss_pred cCCchhh
Confidence 6655543
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.34 E-value=6.5e-12 Score=120.14 Aligned_cols=193 Identities=20% Similarity=0.263 Sum_probs=101.0
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHH------HH
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACL------QL 250 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 250 (557)
|+||++|++.|.+++..+ ..+.+.|+|+.|+|||+|++.+.+........++|+........ ...... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHH
Confidence 799999999999998643 35689999999999999999999987443333444332221110 001111 01
Q ss_pred HHHHHHh---cCCc---------cc--cCHHHHHHHHc--cCceEEEEcCCCCHH-----------HHHHHhccCCCCCC
Q 008685 251 KLLSKLL---QDNN---------VI--LNIALSFRRLS--RRKVLIVFDDVSCFN-----------QIESLIGSLDWFTP 303 (557)
Q Consensus 251 ~ll~~~~---~~~~---------~~--~~~~~l~~~l~--~k~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~ 303 (557)
.+...+. .... .. .....+.+.+. +++++||+||+.... .+..+...+... .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 1111111 1100 00 12444444444 345999999995433 122233222222 3
Q ss_pred ceEEEEEeCChhhhhc--------cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 304 RSTIIITTRDKQVLRN--------WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 304 ~~~IiiTsR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
...+|+++....+... .+....+.|++|+.+++.+++.........- +...+..++|+..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 3344455444433322 2334569999999999999999864322110 123677899999999999988753
No 15
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=3.4e-09 Score=108.70 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=155.3
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC------ceEEEEeccccccCCCChH
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE------GSCFLQNVREESVRPGGLA 246 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~ 246 (557)
+.|+||++++++|...+.. .....+.+.|+|++|+|||++++.+++.+..... ..+++. .. . .....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~---~-~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQ---I-LDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CC---C-CCCHH
Confidence 6799999999999998864 1234567899999999999999999988754322 123332 11 1 23445
Q ss_pred HHHHHHHHHHhc--CCcc--ccC----HHHHHHHHc--cCceEEEEcCCCCH-----HHHHHHhccC--CCC-CCceEEE
Q 008685 247 CLQLKLLSKLLQ--DNNV--ILN----IALSFRRLS--RRKVLIVFDDVSCF-----NQIESLIGSL--DWF-TPRSTII 308 (557)
Q Consensus 247 ~l~~~ll~~~~~--~~~~--~~~----~~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~l~~~l--~~~-~~~~~Ii 308 (557)
.+...++.++.. .... ..+ ...+.+.+. +++++||||+++.. ..+..+.... ... +....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 666677777642 1111 111 233444443 56789999999655 1233333221 111 1334455
Q ss_pred EEeCChhhhhccc-------cceEEEcccCCHHHHHHHHHhccccC---CCCCCChHHHHHHHHHHcCCCchhhHhhh-h
Q 008685 309 ITTRDKQVLRNWG-------VKKIYEMEALEYDHALELFSRHAFKQ---IHPAVGYEELSSKVMEYAQGVPLALKVLG-C 377 (557)
Q Consensus 309 iTsR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~~~~i~~~~~G~PLal~~~a-~ 377 (557)
.++........+. ....+.+++++.++..+++..++... ..-.+...+.+..++..+.|.|-.+..+. .
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5555443221111 12468899999999999998876321 11111222344556666778884433222 1
Q ss_pred hh----c-C---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccC----CCCHHHHHH----HHH
Q 008685 378 FL----F-G---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFK----GEDVYSVMK----FLD 441 (557)
Q Consensus 378 ~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~----~~~~~~l~~----~~~ 441 (557)
.. . + -+.+....+...+ -......++..||.+++.++..++..-. .+....+.. +..
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 11 1 1 1333333333332 1233456778999999888877664322 233433333 112
Q ss_pred hcCCc------hhhcHHHHhhCCCeEEc
Q 008685 442 ASGFY------PEIGISVLVDKSLIVIS 463 (557)
Q Consensus 442 ~~~~~------~~~~l~~L~~~sLl~~~ 463 (557)
..+.. ...+++.|...|||...
T Consensus 323 ~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11211 23469999999999965
No 16
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=4.9e-10 Score=101.00 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=84.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC-----ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHH-H
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE-----GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFR-R 272 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~-~ 272 (557)
|++.|+|.+|+||||+++.++..+..... ...++...+.... ......+...+....... .... ...+.. .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~-~~~~-~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPES-IAPI-EELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccc-hhhh-HHHHHHHH
Confidence 57899999999999999999998765532 1222222332222 111123333332222221 1111 111222 2
Q ss_pred HccCceEEEEcCCCCHHH---------HHHHhccC-CC-CCCceEEEEEeCChhh---hhccccceEEEcccCCHHHHHH
Q 008685 273 LSRRKVLIVFDDVSCFNQ---------IESLIGSL-DW-FTPRSTIIITTRDKQV---LRNWGVKKIYEMEALEYDHALE 338 (557)
Q Consensus 273 l~~k~~LlVlDdv~~~~~---------~~~l~~~l-~~-~~~~~~IiiTsR~~~~---~~~~~~~~~~~l~~L~~~ea~~ 338 (557)
...+++++|+|++++... +..++..+ .. ..+++++++|||.... .........+++.+|+.++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 257899999999954322 22222222 11 2578999999998765 2233344689999999999999
Q ss_pred HHHhcc
Q 008685 339 LFSRHA 344 (557)
Q Consensus 339 L~~~~~ 344 (557)
++.+..
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 998764
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=3e-09 Score=104.13 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=105.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccC---HHHHHHH-
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN---IALSFRR- 272 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~l~~~- 272 (557)
+.+.+.|+|++|+|||||++.+++.+...--..+++... ......+...+...++........ ...+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 345899999999999999999998865321112222211 233445566666555432221111 1222222
Q ss_pred ----HccCceEEEEcCCCCH--HHHHHHh---ccCCCCCCceEEEEEeCChhhhhcc----------ccceEEEcccCCH
Q 008685 273 ----LSRRKVLIVFDDVSCF--NQIESLI---GSLDWFTPRSTIIITTRDKQVLRNW----------GVKKIYEMEALEY 333 (557)
Q Consensus 273 ----l~~k~~LlVlDdv~~~--~~~~~l~---~~l~~~~~~~~IiiTsR~~~~~~~~----------~~~~~~~l~~L~~ 333 (557)
..+++.++|+||++.. ..++.+. ...........|++|.... ....+ .....+++++|+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 2567899999999653 3344332 2111112333556665433 11111 1134678999999
Q ss_pred HHHHHHHHhccccCC--CCCCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 334 DHALELFSRHAFKQI--HPAVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 334 ~ea~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
+|..+++...+.... ......++..+.|++.++|+|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999987664322 1122346889999999999999999998765
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=7.7e-11 Score=115.74 Aligned_cols=281 Identities=20% Similarity=0.245 Sum_probs=187.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc-ccCHHHHHHHHcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV-ILNIALSFRRLSR 275 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~~~~~~l~~~l~~ 275 (557)
..+.+.++|.|||||||++-++.. +...|...+|+......+. + ..+.......+.-.... +.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-~---~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-P---ALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc-h---hHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 467899999999999999999999 8889999988876665544 2 22221222212111111 1125567778888
Q ss_pred CceEEEEcCCCCHH-HHHHHhccCCCCCCceEEEEEeCChhhhhccccceEEEcccCCHH-HHHHHHHhccccCCC---C
Q 008685 276 RKVLIVFDDVSCFN-QIESLIGSLDWFTPRSTIIITTRDKQVLRNWGVKKIYEMEALEYD-HALELFSRHAFKQIH---P 350 (557)
Q Consensus 276 k~~LlVlDdv~~~~-~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~~---~ 350 (557)
++.++|+||..... ....+...+....+.-.|+.|+|+... ........+++|+.. ++.++|...+..... -
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999996543 233333333334566778999998643 234567788888776 788888776633221 1
Q ss_pred CCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHh----hhcC------ChhhHHHHHHHhhcCCChhhHHH
Q 008685 351 AVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINK----LKSI------LHPSIQEILKISYDGLDDKEKNI 420 (557)
Q Consensus 351 ~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~~~k~~ 420 (557)
..........|.++..|.|++|+.+++..+.....+....+.. +... ........+..||.-|+..++-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2233567889999999999999999999887655544433332 2221 13457788999999999999999
Q ss_pred HhhhhcccCCCCHHHHHHHHHh-----cCCchhhcHHHHhhCCCeEEcc---CCeEEcCHHHHHHHHHHHhhh
Q 008685 421 FLDVACFFKGEDVYSVMKFLDA-----SGFYPEIGISVLVDKSLIVISN---NDRITMHDLLQELGRDIVLQE 485 (557)
Q Consensus 421 l~~la~f~~~~~~~~l~~~~~~-----~~~~~~~~l~~L~~~sLl~~~~---~~~~~mH~lvr~~a~~~~~~e 485 (557)
+..++.|...|+.+........ +.+.....+..|++++++.... .-.|+.-+-+|.|+.....+.
T Consensus 245 ~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 245 FGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999887633222211 1122334578899999987553 224666666777776665543
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=99.02 E-value=6.4e-09 Score=98.78 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=95.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.+.+.|+|++|+|||+|+..+++.+..+...+.|+..... ...... +.+.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~-----------------~~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPA-----------------VLENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHH-----------------HHhhcc-cC
Confidence 4578999999999999999999998766666666652100 000001 111122 23
Q ss_pred eEEEEcCCCCH---HHHH-HHhccCCC-CCCceEEE-EEeCC---------hhhhhccccceEEEcccCCHHHHHHHHHh
Q 008685 278 VLIVFDDVSCF---NQIE-SLIGSLDW-FTPRSTII-ITTRD---------KQVLRNWGVKKIYEMEALEYDHALELFSR 342 (557)
Q Consensus 278 ~LlVlDdv~~~---~~~~-~l~~~l~~-~~~~~~Ii-iTsR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~ 342 (557)
-+|+|||++.. ..|+ .+...+.. ...+..+| +|+.. +.+...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999652 2333 22222211 12355554 45544 23333334456889999999999999998
Q ss_pred ccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 343 HAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
.+...... ..++...-|++.+.|..-.+..+-..|
T Consensus 173 ~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 87644322 237888889999998887766554433
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.00 E-value=5.8e-09 Score=102.04 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=103.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
.+++|-...+.++ +.. +......+||++|+||||||+.++......|...--+ ..+...+...+ .
T Consensus 30 ~HLlg~~~~lrr~---v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i~-e 94 (436)
T COG2256 30 EHLLGEGKPLRRA---VEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREII-E 94 (436)
T ss_pred HhhhCCCchHHHH---Hhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHHH-H
Confidence 3445544444443 332 4566788999999999999999999766554421111 23333333222 1
Q ss_pred HHhcCCccccCHHHHHHHHccCceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEE--EeCChhhh---hccccceEEE
Q 008685 255 KLLQDNNVILNIALSFRRLSRRKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIII--TTRDKQVL---RNWGVKKIYE 327 (557)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~Iii--TsR~~~~~---~~~~~~~~~~ 327 (557)
. .-.....+++.+|++|.| .+..+-+.|++.+. .|.-|+| ||-|+... .......+++
T Consensus 95 ~------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~ 159 (436)
T COG2256 95 E------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFE 159 (436)
T ss_pred H------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheee
Confidence 1 112234578999999999 56677778877653 5665555 66666421 1234567999
Q ss_pred cccCCHHHHHHHHHhccccCCCC-----CCChHHHHHHHHHHcCCCchh
Q 008685 328 MEALEYDHALELFSRHAFKQIHP-----AVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 328 l~~L~~~ea~~L~~~~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLa 371 (557)
+++|+.++-.+++.+.+...... ....++....++..++|---+
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 99999999999998833221111 112356777889999887543
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.87 E-value=2.6e-07 Score=95.87 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=106.2
Q ss_pred CCccccchhHHH---HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEE---IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~---l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..+||++..+.. |..++.. .....+.|+|++|+||||||+.+++.....|.. +.. . ..+...+ ..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~---~~~~~~i-r~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---V---TSGVKDL-RE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---c---cccHHHH-HH
Confidence 568999888666 7777754 345578899999999999999999876543321 110 0 1111111 11
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEE--EeCChhh--h-hccccce
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIII--TTRDKQV--L-RNWGVKK 324 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~Iii--TsR~~~~--~-~~~~~~~ 324 (557)
++..... ....+++.+|++|+++.. .+.+.++..+. .+..+++ ||.+... . .......
T Consensus 80 ii~~~~~------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 80 VIEEARQ------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HHHHHHH------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 2111100 112357789999999643 45556655543 2444444 3444321 1 1122346
Q ss_pred EEEcccCCHHHHHHHHHhccccCCCCC-CChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 325 IYEMEALEYDHALELFSRHAFKQIHPA-VGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 325 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
.+.+.+++.++...++...+....... ...++....|++.|+|.|..+..+..
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 889999999999999988653211111 23367788999999999977654443
No 22
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=6.6e-08 Score=92.02 Aligned_cols=174 Identities=14% Similarity=0.174 Sum_probs=103.6
Q ss_pred CCccc--cchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVG--VESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vG--R~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
+.|++ .+..++.+..++.. ...+.+.|+|++|+|||+||+.+++.........+++. ...... ....+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ-------ADPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH-------hHHHH
Confidence 44553 34466777776542 34568999999999999999999988765544444443 111100 00011
Q ss_pred HHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH---H-HHHHhccCCC-CCCceEEEEEeCChhh---------hh
Q 008685 253 LSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN---Q-IESLIGSLDW-FTPRSTIIITTRDKQV---------LR 318 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~~~IiiTsR~~~~---------~~ 318 (557)
...+.+ .-+|||||++... . .+.+...+.. ...+..+|+||+.... ..
T Consensus 85 -----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 85 -----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 111222 3489999995432 1 2223222211 1234578888875421 11
Q ss_pred ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhh
Q 008685 319 NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCF 378 (557)
Q Consensus 319 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 378 (557)
.......+++++++.++...++...+..... ...++....|++.+.|+|..+..+...
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 1222357899999999999998875432221 233677888999999999888776544
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=4.7e-07 Score=96.84 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC---------------------CceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF---------------------EGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 233 (557)
..+||.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+...- ...+.+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 67999999999999998754 2356778999999999999999998764211 0111110
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
. .. ..+...+ +.++..... .-..++.-++|||+++.. ..+..|+..+.....+.++|+||
T Consensus 95 A----as-~rgVDdI-ReLIe~a~~------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 95 A----AS-NRGVDEM-AALLERAVY------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred c----cc-cccHHHH-HHHHHHHHh------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 0 00 0011111 111111000 001234568999999654 44677777666556788888888
Q ss_pred CChhhh--hccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc-hhhHhh
Q 008685 312 RDKQVL--RNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP-LALKVL 375 (557)
Q Consensus 312 R~~~~~--~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 375 (557)
.+..-. ........+.+.+++.++..+.+.+.+...... ...+....|++.++|.. -++..+
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 776432 123445789999999999999998876443322 23677889999999865 355443
No 24
>PF14516 AAA_35: AAA-like domain
Probab=98.79 E-value=5.5e-06 Score=83.17 Aligned_cols=198 Identities=11% Similarity=0.139 Sum_probs=117.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc-ccCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE-SVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~ll 253 (557)
+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+.....--..+++. .... +....+.......+.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHH
Confidence 6678999666667666653 3468999999999999999999998866533334443 2222 111334555555554
Q ss_pred HHHhcCCcccc--------------C-HHHHHHH-H--ccCceEEEEcCCCCHH----HHHHHhccCCC-------CC--
Q 008685 254 SKLLQDNNVIL--------------N-IALSFRR-L--SRRKVLIVFDDVSCFN----QIESLIGSLDW-------FT-- 302 (557)
Q Consensus 254 ~~~~~~~~~~~--------------~-~~~l~~~-l--~~k~~LlVlDdv~~~~----~~~~l~~~l~~-------~~-- 302 (557)
..+...-.... + ...+.+. + .+++++|+||+++..- ....++..+.. ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 44433222111 1 1222222 2 2589999999995322 11223222210 00
Q ss_pred CceEEEE-EeCChhhhh-----ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 303 PRSTIII-TTRDKQVLR-----NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 303 ~~~~Iii-TsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
...++++ .+....... ..+....++|++++.+|...|+..+... ......++|...+||+|..+..++
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122222 222111111 1234467899999999999999886422 113448999999999999999999
Q ss_pred hhhcCC
Q 008685 377 CFLFGR 382 (557)
Q Consensus 377 ~~L~~~ 382 (557)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 998653
No 25
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.2e-06 Score=88.46 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC--CceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF--EGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|.+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+-.+- .............. ... ......+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~-c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPD-HPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCC-ChHHHHH
Confidence 77999999999999988754 2356789999999999999999999864221 10000000000000 000 0000000
Q ss_pred HHH-------Hh---cCCc----cccCHHHHHH---HH-----ccCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEE
Q 008685 253 LSK-------LL---QDNN----VILNIALSFR---RL-----SRRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTII 308 (557)
Q Consensus 253 l~~-------~~---~~~~----~~~~~~~l~~---~l-----~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~Ii 308 (557)
... +. .+.. ..+.++.+++ .+ .+.+-++|+|+++ +......++..+.....++.+|
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 000 00 0000 1122333333 22 2456799999995 4455666666665445667777
Q ss_pred EEeCChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 309 ITTRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 309 iTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|+|+....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777653 3222 334578999999999999999886421 11 2333688999999998665543
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=4.3e-07 Score=91.32 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=107.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|++..++.|..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. .. .+. ......+. ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~-~~~~~~~~-~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASD-ERGIDVIR-NKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-ccc-ccchHHHH-HHHH
Confidence 56899999999999998653 3345799999999999999999998644321111221 10 011 11111111 1111
Q ss_pred HHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEccc
Q 008685 255 KLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEMEA 330 (557)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l~~ 330 (557)
........ ....+-++++|+++.. .....+...+....+.+.+|+++.... .... ......+++++
T Consensus 91 ~~~~~~~~----------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 91 EFARTAPV----------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred HHHhcCCC----------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 11111000 0123568999998543 334445444444455677777764432 2111 12335789999
Q ss_pred CCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 331 LEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 331 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
++.++....+...+...... ..++.+..+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999998876543322 23678889999999998654
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.3e-06 Score=91.89 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=112.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc--cCCceEEEEeccccccC--CCChHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS--DFEGSCFLQNVREESVR--PGGLACLQL 250 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~--~~~~~~l~~ 250 (557)
..++|-+...+.|..++..+ .-...+.++|++|+||||+|+.+++.+.. .+...|+.+........ ..++.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~---- 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL---- 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE----
Confidence 67899999999998888754 23466799999999999999999988642 12223332210000000 00000
Q ss_pred HHHHHHhcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-c
Q 008685 251 KLLSKLLQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-W 320 (557)
Q Consensus 251 ~ll~~~~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~ 320 (557)
.+........ ....+.+.+ .+++-++|+|+++.. ..+..++..+....+.+.+|+++... .+... .
T Consensus 89 ----el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 89 ----EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred ----EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000000000 011222221 245669999999643 45777777766555566666666443 33222 2
Q ss_pred ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 321 GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 321 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
.....+++.+++.++..+.+...+-..+.. ..++.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 335689999999999999998876443322 23677889999999998654
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.76 E-value=4.3e-07 Score=92.09 Aligned_cols=193 Identities=17% Similarity=0.129 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-Cc-eEEEEeccccccCCCChHHHHH--
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-EG-SCFLQNVREESVRPGGLACLQL-- 250 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l~~-- 250 (557)
..++|++..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+.... .. .+.+. ...... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFD--QGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhh--cchhhhhcCc
Confidence 67899999999999988643 334688999999999999999998875432 22 22222 111100 00000000
Q ss_pred HHHHHHhcCCc-cccCHHHHHHHH---------ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCChh-hh
Q 008685 251 KLLSKLLQDNN-VILNIALSFRRL---------SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDKQ-VL 317 (557)
Q Consensus 251 ~ll~~~~~~~~-~~~~~~~l~~~l---------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~ 317 (557)
.....+..... .....+.+++.+ ...+-+||+||++.. .....+...+......+++|+|+.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000000 000111121111 133458999999543 233344443333345677887775432 22
Q ss_pred hc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 318 RN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 318 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
.. ......+++.+++.++..+++...+...... ...+.+..+++.++|++-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 1234578899999999999998866433322 3367889999999998765543
No 29
>PRK08727 hypothetical protein; Validated
Probab=98.75 E-value=2.1e-07 Score=88.62 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=98.1
Q ss_pred CCccccch-hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHH
Q 008685 175 NQLVGVES-RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~-~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
+.|++... .+..+...... .....+.|+|++|+|||+|+.++++....+...+.++.. .+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~----------~~~~~~ 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA----------AAGRLR 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH----------hhhhHH
Confidence 44665443 33333333322 223569999999999999999999987766555556541 10 110110
Q ss_pred HHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----HHHHHHhccCCC-CCCceEEEEEeCChhh---------hhc
Q 008685 254 SKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----NQIESLIGSLDW-FTPRSTIIITTRDKQV---------LRN 319 (557)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~IiiTsR~~~~---------~~~ 319 (557)
...+.+. +.-+||+||+... .....+...+.. ...+..||+||+...- ...
T Consensus 86 --------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 86 --------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred --------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 0111121 2358999999532 211222222111 1346679999986421 122
Q ss_pred cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 320 WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 320 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
+.....+++++++.++-.+++.+++..... ...++....|++.++|-.-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 223468899999999999999986643222 233677888888888666554
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.5e-06 Score=88.61 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCc---eEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG---SCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|-+..++.|...+..+ .-.+.+.++|++|+||||+|+.+++.+...... .|.. ......+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~---------c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK---------CIICKEIEKG 85 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC---------CHHHHHHhcC
Confidence 67999999999999988653 235678999999999999999999886421100 0000 0000000000
Q ss_pred HHHHHhc-CCccccC---HHHHHHHH-----ccCceEEEEcCCCCHH--HHHHHhccCCCCCCceEEEEEeCChh-hhhc
Q 008685 252 LLSKLLQ-DNNVILN---IALSFRRL-----SRRKVLIVFDDVSCFN--QIESLIGSLDWFTPRSTIIITTRDKQ-VLRN 319 (557)
Q Consensus 252 ll~~~~~-~~~~~~~---~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~ 319 (557)
....+.. ....... ...+.+.+ .+++-++|+|+++... .+..++..+....+...+|++|.+.. +...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000000 0000000 11111221 2345699999996543 46667766665566777777775543 3222
Q ss_pred -cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 320 -WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 320 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
.+....+++.+++.++..+.+...+...+. ...++.+..|++.++|.|--+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 233578999999999999998876643322 123577888999999988643
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.6e-06 Score=94.59 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=113.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---ceEEEEe---------------cc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---GSCFLQN---------------VR 236 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~---------------~~ 236 (557)
..+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+..... ..|..+. +.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 67999999999999988653 22456789999999999999999988643210 0011000 00
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 237 EESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 237 ~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
..+ ...... .+.+...+. ..-..++.-++|||++.. ......|+..+.......++|++|.+.
T Consensus 95 Aas--~~kVDd-IReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 95 AAS--RTKVDD-TRELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred ccc--ccCHHH-HHHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 000 011111 111111110 011235677999999954 456777777776556677777766554
Q ss_pred -hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 315 -QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 315 -~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
.+... ......+++.+|+.++..+.+...+..... ....+.+..|++.++|.|--+
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 33322 334578999999999999999886643221 223577889999999988533
No 32
>PLN03025 replication factor C subunit; Provisional
Probab=98.72 E-value=8.8e-07 Score=88.76 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=106.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
..++|.+..++.|..++..+ +.+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .+. ..+... .+..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd-~~~~~~-vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASD-DRGIDV-VRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccc-cccHHH-HHHHH
Confidence 67899999999998887643 3345779999999999999999998643 2332221111 111 112221 12222
Q ss_pred HHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cccceEEEcc
Q 008685 254 SKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WGVKKIYEME 329 (557)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~~~~~~~l~ 329 (557)
......... ...++.-++|+|+++.. .....+...+......+++|+++... .+... ......++++
T Consensus 86 ~~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 86 KMFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred HHHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 111110000 00234569999999643 33344444444345667777766543 22211 1234678999
Q ss_pred cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 330 ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 330 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
+++.++....+...+-..+.. ..++....|++.++|..-.+
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 999999999988876443322 22677889999999887443
No 33
>PF13173 AAA_14: AAA domain
Probab=98.71 E-value=1.3e-07 Score=81.17 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=76.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.+++.|.|+.|+|||||+++++++.. .-...+++. .. +......... . ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~-------~~~~~~~~~~-~---------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FD-------DPRDRRLADP-D---------LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cC-------CHHHHHHhhh-h---------hHHHHHHhhccCC
Confidence 36899999999999999999998765 223344443 11 1111000000 0 1222333333467
Q ss_pred eEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhhc------cccceEEEcccCCHHHH
Q 008685 278 VLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLRN------WGVKKIYEMEALEYDHA 336 (557)
Q Consensus 278 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~------~~~~~~~~l~~L~~~ea 336 (557)
.+++||++.....|...+..+....+..+|++|+........ .+....+++.||+..|-
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999998877777777666555567899999988755422 12345789999998873
No 34
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=9.2e-07 Score=88.38 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-----CCceEEEEeccccccCCCChHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-----FEGSCFLQNVREESVRPGGLACLQ 249 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~ 249 (557)
..++|-+...+.|...+..+ .-.+...++|+.|+|||++|..++..+... ++....+...... ......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~---~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKK---SIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCC---CCCHHHH-
Confidence 45789888889999988653 235678999999999999999999875322 2222222211110 1122221
Q ss_pred HHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEEEeCChhhh-hc-cccceE
Q 008685 250 LKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIIITTRDKQVL-RN-WGVKKI 325 (557)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~-~~-~~~~~~ 325 (557)
+.+...+... -..+++-++|+|++ .+.+....++..+....+++.+|++|.+.+.+ +. ......
T Consensus 79 r~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 79 RNIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 1222221111 01234557777777 45567888888888777888888888766432 21 234578
Q ss_pred EEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 326 YEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 326 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+++.+++.++....+.+... ....+.+..++..++|.|.-+...
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999988876541 112455778999999998755433
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=3.8e-07 Score=96.56 Aligned_cols=177 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred CCccccchhHHHHHHhhccc--CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE--WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|.+..+++|.+++..- ....+.+.|+|++|+||||+|..+++.+. ++... +. . +. ... ......+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-ln-a---sd-~r~-~~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-LN-A---SD-QRT-ADVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-Ec-c---cc-ccc-HHHHHHH
Confidence 67999999999999988641 12267899999999999999999999863 22211 11 1 11 111 1122222
Q ss_pred HHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH------HHHHHHhccCCCCCCceEEEEEeCChhhh---hccccc
Q 008685 253 LSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF------NQIESLIGSLDWFTPRSTIIITTRDKQVL---RNWGVK 323 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~~~~IiiTsR~~~~~---~~~~~~ 323 (557)
+....... .....++-+||+|+++.. ..+..+...+. ..+..||+|+.+..-. ......
T Consensus 85 i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 85 AGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred HHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccc
Confidence 22211110 011135779999999653 23455544443 2345566666543211 112234
Q ss_pred eEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 324 KIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 324 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
..+++++++.++....+...+...... ...+....|++.++|..-.+..
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 678999999999999888776443322 2367889999999998765543
No 36
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=7.5e-08 Score=94.91 Aligned_cols=89 Identities=26% Similarity=0.470 Sum_probs=74.6
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCc--------hhh
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASS--------RWC 71 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S--------~~c 71 (557)
+||||||+.. +...+++-|.-.|.-.|++||+|- .+..|+ +.+.+.+.|..++.+|.|+|||.+.. .|.
T Consensus 613 ~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWV 690 (832)
T KOG3678|consen 613 IDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWV 690 (832)
T ss_pred cceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHH
Confidence 5999999776 445688888889999999999997 677665 56889999999999999999998643 477
Q ss_pred HHHHHHHHhhhcccCceEEeEEEE
Q 008685 72 LDELLKILDCRKEYAQIVIPVFYR 95 (557)
Q Consensus 72 ~~El~~~~~~~~~~~~~v~Pv~~~ 95 (557)
..|+.-+++|+++ |+|||..
T Consensus 691 HKEl~~Afe~~KN----IiPI~D~ 710 (832)
T KOG3678|consen 691 HKELKCAFEHQKN----IIPIFDT 710 (832)
T ss_pred HHHHHHHHHhcCC----eeeeecc
Confidence 7899999888765 9999844
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.70 E-value=4.4e-07 Score=86.36 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred CCcc-ccchhH-HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLV-GVESRV-EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~v-GR~~~l-~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
+.|+ |...+. ..+.++.. +....+.+.|+|++|+|||+||..+++.....-....++.... .. ..+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~--------~~---~~~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS--------PL---LAF 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH--------hH---HHH
Confidence 4455 554444 34444433 2234567899999999999999999998654433444443110 00 000
Q ss_pred HHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCC-CCce-EEEEEeCChhhhh--------cc
Q 008685 253 LSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWF-TPRS-TIIITTRDKQVLR--------NW 320 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~-~~~~-~IiiTsR~~~~~~--------~~ 320 (557)
.. ....-+||+||++.. .....+...+... ..+. .+|+|++...... .+
T Consensus 86 ------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 00 112347999999532 2222232222111 2233 4666666432111 22
Q ss_pred ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 321 GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 321 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
.....+++++++.++-..++...+.... ....++....+++.+.|++..+..+...+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2246889999999987777776442222 22336788899999999999888776554
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.7e-06 Score=91.69 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=112.1
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..+||.+...+.|.+++..+ .-...+.++|+.|+||||+|+.+++.+..... .. ...+.. ......+...-..
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-~~pCg~-C~sC~~I~~g~hp 87 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-STPCEV-CATCKAVNEGRFI 87 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-CCCCcc-CHHHHHHhcCCCC
Confidence 67999999999999998754 23568899999999999999999988642210 00 000000 0000000000000
Q ss_pred HHhc-CCccccCHHHHHHH--------HccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCChhhh--hccc
Q 008685 255 KLLQ-DNNVILNIALSFRR--------LSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDKQVL--RNWG 321 (557)
Q Consensus 255 ~~~~-~~~~~~~~~~l~~~--------l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~~~~--~~~~ 321 (557)
.+.. ........+.+++. ..++.-++|+|+++.. .....++..+.....+..+|++|.+..-. ....
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH
Confidence 0000 00000011111111 1245669999999643 45666766666555677888877665321 1124
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
....+++.+++.++..+.+...+...... ...+....|++.++|.+-.+
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 45789999999999999998876443322 23677888999999987443
No 39
>PRK05642 DNA replication initiation factor; Validated
Probab=98.69 E-value=5.1e-07 Score=85.97 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=92.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
...+.|+|.+|+|||.|++.+++.+...-..++|+.. . .+... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh--------------hHHHHHhhhhCC
Confidence 3678999999999999999999887655445556541 1 11100 011223333322
Q ss_pred eEEEEcCCCCH---HHHH-HHhccCCC-CCCceEEEEEeCChh-hh--------hccccceEEEcccCCHHHHHHHHHhc
Q 008685 278 VLIVFDDVSCF---NQIE-SLIGSLDW-FTPRSTIIITTRDKQ-VL--------RNWGVKKIYEMEALEYDHALELFSRH 343 (557)
Q Consensus 278 ~LlVlDdv~~~---~~~~-~l~~~l~~-~~~~~~IiiTsR~~~-~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~ 343 (557)
+||+||+... ..++ .+...+.. ...|..+|+||+... -. ..+.....+++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999422 2222 23222211 134677888887542 11 11223467899999999999999865
Q ss_pred cccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 344 AFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
+..... ...++...-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 533221 2236778888888888876665554433
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.9e-06 Score=91.13 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=112.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..+||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+...-...- ... ... .-+.-.....+..
T Consensus 16 ddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~-PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQ-PCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCC-CCcccHHHHHHHc
Confidence 67999999999999998754 23567789999999999999999988643100000 000 000 0000000000000
Q ss_pred ----HHhc-CCccccCHHHHHH---H-----HccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 ----KLLQ-DNNVILNIALSFR---R-----LSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ----~~~~-~~~~~~~~~~l~~---~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
.+.. +......++.+++ . ..++.-++|||+++.. .....|+..+.....++.+|++|.+. .+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0000 0000011222221 1 1345669999999643 56777887776656677766666554 3332
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhH
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 373 (557)
. ......+.+..++.++..+.+.+.+...... ...+....|++.++|.|.-..
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2 2345789999999999999988766433222 225667889999999996443
No 41
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.67 E-value=5.4e-07 Score=84.80 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCc--eEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG--SCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
....+.|+|+.|+|||.|.+++++.+....+. ++++. .......+...+... ....+++.++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~-----~~~~~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG-----EIEEFKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT-----SHHHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc-----cchhhhhhhh
Confidence 34568999999999999999999998765443 33432 122333333333221 1444555565
Q ss_pred cCceEEEEcCCCCH---HH----HHHHhccCCCCCCceEEEEEeCCh-hh--------hhccccceEEEcccCCHHHHHH
Q 008685 275 RRKVLIVFDDVSCF---NQ----IESLIGSLDWFTPRSTIIITTRDK-QV--------LRNWGVKKIYEMEALEYDHALE 338 (557)
Q Consensus 275 ~k~~LlVlDdv~~~---~~----~~~l~~~l~~~~~~~~IiiTsR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~ 338 (557)
+ -=+|++||++.. .. +-.+...+. ..|.+||+|+... .- ...+...-.+++.+++.++-.+
T Consensus 97 ~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 97 S-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp T-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred c-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 3 348899999432 22 222222222 3566899999654 21 1223345689999999999999
Q ss_pred HHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 339 LFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 339 L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
++.+.+...... ..++.+.-|++.+.+..-.|..+-.
T Consensus 174 il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 174 ILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999887544332 3367888888888777766655443
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.67 E-value=2.2e-07 Score=85.24 Aligned_cols=175 Identities=18% Similarity=0.206 Sum_probs=96.3
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|||-+..++.+.-++.. ..+...-+.+||++|+||||||.-+++.....|. +.. .. . ......+. .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~-~---i~k~~dl~-~ 94 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GP-A---IEKAGDLA-A 94 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CC-C-----SCHHHH-H
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-ch-h---hhhHHHHH-H
Confidence 7899999999888766543 2344677899999999999999999998776653 121 10 0 01111111 1
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCC--CHHHHHHHhccCCC--------CCCc-----------eEEEEE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVS--CFNQIESLIGSLDW--------FTPR-----------STIIIT 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~--------~~~~-----------~~IiiT 310 (557)
++ ..++ ++.+|++|.+. +..+-+.|++.... .+++ +-|=.|
T Consensus 95 il-----------------~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 95 IL-----------------TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp HH-----------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred HH-----------------HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 11 1122 35588889994 33444444443221 1121 223457
Q ss_pred eCChhhhhccc--cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhh
Q 008685 311 TRDKQVLRNWG--VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCF 378 (557)
Q Consensus 311 sR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 378 (557)
||...+...+. ..-..+++..+.+|-.+++.+.+..-. -+..++.+.+|++.+.|.|--..-+-+.
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 77654432221 123568999999999999988764322 2344788999999999999655444333
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.66 E-value=8.2e-07 Score=95.58 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=139.9
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-----CC-c-eEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-----FE-G-SCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~-~~~~~~~~~~~~~~~~ 244 (557)
+.+.||++|+++|...|.. ++....++.|+|++|+|||++++.+.+.+... .+ . ++++. ... ...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~----Lst 829 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN----VVH 829 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc----cCC
Confidence 7899999999999988864 23334577899999999999999999876432 22 1 22332 111 233
Q ss_pred hHHHHHHHHHHHhcCCcccc-C----HHHHHHHHc---cCceEEEEcCCCCHH-----HHHHHhccCCCCCCceEEE--E
Q 008685 245 LACLQLKLLSKLLQDNNVIL-N----IALSFRRLS---RRKVLIVFDDVSCFN-----QIESLIGSLDWFTPRSTII--I 309 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~-~----~~~l~~~l~---~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~Ii--i 309 (557)
...+...+..++........ . ...+...+. ....+||||+++... .+-.|..... ..+++|+ .
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIG 907 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEE
Confidence 44555555556543322211 1 223333331 224589999995432 2333332211 2344443 3
Q ss_pred EeCChhhh--------hccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHH---Hc-CCCchhhHhhhh
Q 008685 310 TTRDKQVL--------RNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVME---YA-QGVPLALKVLGC 377 (557)
Q Consensus 310 TsR~~~~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~---~~-~G~PLal~~~a~ 377 (557)
+|.+.... ..++ ...+..+|++.++-.+++..++.... ....++....+++ .. |-.=.||..+-.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~--gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCK--EIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 44332211 1111 23467799999999999998874321 1111233333333 22 333344444433
Q ss_pred hhcC--C---CHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccCC-----CCHHHHHH----HHHh-
Q 008685 378 FLFG--R---EKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFKG-----EDVYSVMK----FLDA- 442 (557)
Q Consensus 378 ~L~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~-----~~~~~l~~----~~~~- 442 (557)
+... . ..+....+...+ ....+...+..||.+.|.+|..+...... ++...+.. ++..
T Consensus 985 AgEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~ 1057 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETS 1057 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhh
Confidence 3211 1 122222222222 12234456678998888877755433221 33222221 1210
Q ss_pred ---cCCc-----hhhcHHHHhhCCCeEEc
Q 008685 443 ---SGFY-----PEIGISVLVDKSLIVIS 463 (557)
Q Consensus 443 ---~~~~-----~~~~l~~L~~~sLl~~~ 463 (557)
-|.. ....+.+|...|+|...
T Consensus 1058 Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1058 GKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 1111 23357888888888765
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=7.7e-07 Score=84.86 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=91.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
..+.+.|+|++|+|||+|+..+++........+.++. .... ...... +.+.+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~~-----------------~~~~~~~- 97 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVPE-----------------VLEGMEQ- 97 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhHH-----------------HHHHhhh-
Confidence 3457899999999999999999998765544444543 1110 000001 1111111
Q ss_pred ceEEEEcCCCCH---HHHH----HHhccCCCCCCceEEEEEeCChh---------hhhccccceEEEcccCCHHHHHHHH
Q 008685 277 KVLIVFDDVSCF---NQIE----SLIGSLDWFTPRSTIIITTRDKQ---------VLRNWGVKKIYEMEALEYDHALELF 340 (557)
Q Consensus 277 ~~LlVlDdv~~~---~~~~----~l~~~l~~~~~~~~IiiTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~ 340 (557)
--+|++||+... ..|+ .+...... ..+.++|+||+.+. +...+....++++++++.++-.+++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 238999999432 2222 22222211 12347899998652 1222334468999999999999998
Q ss_pred HhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 341 SRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
.+++.... -...++...-|++.+.|..-.+..+-.
T Consensus 177 ~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 177 QLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 87654322 223367888899988888766655443
No 45
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.63 E-value=4.3e-06 Score=85.41 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc----C-----------------CceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD----F-----------------EGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~~~~~ 233 (557)
..++|.+..++.|...+..+ .-.+.+.++|++|+|||++|+.++..+... + ....++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 67899999999999988653 235678899999999999999999886422 1 0111111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
.. . ..... ....+...+... -..+++-++|+|+++.. .....++..+....+.+.+|++|
T Consensus 93 ~~----~-~~~~~-~~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 93 AA----S-NNGVD-DIREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred cc----c-cCCHH-HHHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 00 0 00111 111122111100 01234568999998543 45666666665545667777777
Q ss_pred CChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 312 RDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 312 R~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
.+.. +... ......+++.+++.++..+++...+-..+.. ..++.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 5543 2222 2234678999999999999998866433322 225778899999999997665443
No 46
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=4.1e-06 Score=83.91 Aligned_cols=164 Identities=13% Similarity=0.091 Sum_probs=98.4
Q ss_pred cCCCCCCCccccchhHHHHHHhhcccC-CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHH
Q 008685 169 FPCVNNNQLVGVESRVEEIESLLGVEW-EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 169 ~p~~~~~~~vGR~~~l~~l~~~L~~~~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (557)
.|... ..|+||+.++.+|...|...+ ...+++.|.|++|+|||||++.+..... ...++.+. .+...
T Consensus 257 lPa~~-~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eE 324 (550)
T PTZ00202 257 APAVI-RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTED 324 (550)
T ss_pred CCCCc-cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHH
Confidence 34455 889999999999999997532 3356899999999999999999997653 22444322 25678
Q ss_pred HHHHHHHHHhcCCcccc-C-HHHHHHHH-----c-cCceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEEEeCChhhh
Q 008685 248 LQLKLLSKLLQDNNVIL-N-IALSFRRL-----S-RRKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIIITTRDKQVL 317 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~~-~-~~~l~~~l-----~-~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~ 317 (557)
++..++..++....... + ...+.+.+ . +++.+||+-== .+..-+-.=.-.|..-..-|+|++----+.+.
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 88888888875322221 1 22222222 2 55666665322 22221111111122224567777654333221
Q ss_pred h---ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 318 R---NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 318 ~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
. .+....-|.+++++.++|.++-....
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 11223578899999999998877654
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=5.6e-06 Score=86.55 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc----C-----------------CceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD----F-----------------EGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~~~~~ 233 (557)
..++|.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... + .....+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 67999998888888877643 234568999999999999999999875321 0 0111111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
.+. ..+...+. .+...... ....+++-++|+|+++.. .....++..+....+...+|++|
T Consensus 93 ----aa~-~~gid~iR-~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 93 ----AAS-NRGIDEIR-KIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred ----Ccc-cCCHHHHH-HHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 000 11111111 11111100 011245679999999643 44566666665444555555555
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhhhh
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVLGC 377 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 377 (557)
.++ .+... ......+++.+++.++....+...+..... ...++....|++.++|. +.++..+-.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 443 22221 234468999999999999998887643322 22367788899988655 566666644
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=3.1e-08 Score=90.97 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 176 QLVGVESRVEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+|+||++++++|...+.. .....+.+.|+|++|+|||+|.++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 33457899999999999999999999998776
No 49
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=8.7e-07 Score=89.08 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc----CCceEEEEeccccccCCCChHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD----FEGSCFLQNVREESVRPGGLACLQL 250 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~l~~ 250 (557)
..++|-+...+.|...+..+ .....+.|+|+.|+||||+|..+++.+... +..... .. ..+......
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~----~~----~~~~c~~c~ 93 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL----AD----PDPASPVWR 93 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc----CC----CCCCCHHHH
Confidence 78999999999999998754 235678999999999999999999986542 111000 00 000000111
Q ss_pred HHHHH-------Hhc---CC----ccccCHHH---HHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceE
Q 008685 251 KLLSK-------LLQ---DN----NVILNIAL---SFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRST 306 (557)
Q Consensus 251 ~ll~~-------~~~---~~----~~~~~~~~---l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ 306 (557)
.+... +.. .. ...+.++. +.+.+ .++.-++|+|+++. ......++..+.....+..
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 11100 000 00 01112222 22232 24567999999964 3455666666554445556
Q ss_pred EEEEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 307 IIITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 307 IiiTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
+|++|... .+... ......+++.+++.++..+++....... . ..++.+..+++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555444 33222 2345689999999999999998843211 1 225567889999999998655443
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2.4e-06 Score=87.92 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=110.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCc---eEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG---SCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...... .|..+ .....+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C---------~sC~~i~~g 87 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC---------TSCLEITKG 87 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC---------cHHHHHHcc
Confidence 678999999999999887532 24568999999999999999999886432110 01100 000000000
Q ss_pred HHHHHh---cCCcccc-CHHHHHHH-----HccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhhc
Q 008685 252 LLSKLL---QDNNVIL-NIALSFRR-----LSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLRN 319 (557)
Q Consensus 252 ll~~~~---~~~~~~~-~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~ 319 (557)
....+. ....... +...+.+. ..++.-++|+|+++. ......++..+........+|++|.+. .+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 000000 0000000 01111111 234567999999954 456777777776545566666555543 33222
Q ss_pred -cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 320 -WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 320 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
......+.+.+++.++..+.+...+...+.. ..++....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 2345679999999999999888876433222 236778999999999984
No 51
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.58 E-value=5.5e-07 Score=91.96 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=100.2
Q ss_pred CCccccchhHHHHHHhhccc-----------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGVE-----------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|+++.+++|.+.+... -..++-+.|+|++|+|||+||+.+++.....|-...
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~------------- 188 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------------- 188 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-------------
Confidence 56899999999998876321 123556899999999999999999998654431110
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHH-HccCceEEEEcCCCCH----------------HHHHHHhccCCCC--CCc
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRR-LSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF--TPR 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~ 304 (557)
...+. ....+.. ......+.+. -...+.+|+||+++.. ..+..++..+... ..+
T Consensus 189 -~~~l~----~~~~g~~--~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 189 -GSELV----RKYIGEG--ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred -hHHHH----HHhhhHH--HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 00111 1100000 0001111122 2346789999998542 1233333333222 246
Q ss_pred eEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 305 STIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..||.||........ ......+.++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 678888875432211 122457899999999999999987744332221 12567778887754
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.9e-06 Score=86.57 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=108.7
Q ss_pred CCccccchhHHHHHHhhcccCC--------CcEEEEEeccCCCchhHHHHHHHHHhhccC--------------------
Q 008685 175 NQLVGVESRVEEIESLLGVEWE--------DVYTLGIWGIGGIGKTTIAKAIFEKISSDF-------------------- 226 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~--------~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-------------------- 226 (557)
..++|-+..++.|.+.+..+.. -.+.+.++|++|+|||++|..++..+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999998875421 356789999999999999999998753321
Q ss_pred CceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCc
Q 008685 227 EGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPR 304 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 304 (557)
+...++. ... . ......+ +.+....... -..+++-++|+|+++.. .....++..+....++
T Consensus 85 pD~~~i~-~~~--~-~i~i~~i-R~l~~~~~~~------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 85 PDVRVVA-PEG--L-SIGVDEV-RELVTIAARR------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred CCEEEec-ccc--c-cCCHHHH-HHHHHHHHhC------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 1111111 000 0 0111111 1111111100 01234558889999643 4455666666555567
Q ss_pred eEEEEEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 305 STIIITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 305 ~~IiiTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
..+|++|.+. .+.+. ......+.+++++.++..+.+..... ...+.+..++..++|.|.....+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7777766665 33322 33457899999999999998875421 11466788999999999755444
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=3.8e-06 Score=89.85 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=109.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..+||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-.....-+ . . ......+...-..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC--g---~-C~sCr~i~~g~~~ 88 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC--G---V-CQSCTQIDAGRYV 88 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC--c---c-cHHHHHHhccCcc
Confidence 67999999999999998753 23567899999999999999999987532211000000 0 0 0000000000000
Q ss_pred HHhc-CCccccCHHHHHHHH--------ccCceEEEEcCCCCHH--HHHHHhccCCCCCCceEEEEEeCChh-hhhc-cc
Q 008685 255 KLLQ-DNNVILNIALSFRRL--------SRRKVLIVFDDVSCFN--QIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WG 321 (557)
Q Consensus 255 ~~~~-~~~~~~~~~~l~~~l--------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~ 321 (557)
.+.. ........+.+++.+ .+++-++|+|+++... ....|+..+......+.+|++|.+.. +... .+
T Consensus 89 DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 89 DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 0000 000000111111111 2456699999996543 35556665554455677777775542 2211 23
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
....+.+.+++.++....+...+-..+.. ...+.+..|++.++|.+.-+..
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHH
Confidence 34578889999999999998876443322 2367788999999999854433
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-05 Score=80.22 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=157.2
Q ss_pred CCCCCCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCce--EEEEeccccccCCCChH
Q 008685 171 CVNNNQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGS--CFLQNVREESVRPGGLA 246 (557)
Q Consensus 171 ~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~ 246 (557)
..| ..+.+|+.+++++...|.. ....+.-+.|+|.+|+|||+.++.+++++....... +++. ... .....
T Consensus 14 ~iP-~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~----~~t~~ 87 (366)
T COG1474 14 YIP-EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE----LRTPY 87 (366)
T ss_pred CCc-ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee----CCCHH
Confidence 344 6699999999999988754 122233489999999999999999999987664433 4443 221 45566
Q ss_pred HHHHHHHHHHhcCCccccC----HHHHHHHHc--cCceEEEEcCCCCHH-----HHHHHhccCCCCCCceEE--EEEeCC
Q 008685 247 CLQLKLLSKLLQDNNVILN----IALSFRRLS--RRKVLIVFDDVSCFN-----QIESLIGSLDWFTPRSTI--IITTRD 313 (557)
Q Consensus 247 ~l~~~ll~~~~~~~~~~~~----~~~l~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~I--iiTsR~ 313 (557)
.+...++.++......... ...+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 7777777777633222222 344444444 578999999995432 233333332212 3433 334433
Q ss_pred hhhh--------hccccceEEEcccCCHHHHHHHHHhccc---cCCCCCCChHHHHHHHHHHcCCC-chhhHhhhhh--h
Q 008685 314 KQVL--------RNWGVKKIYEMEALEYDHALELFSRHAF---KQIHPAVGYEELSSKVMEYAQGV-PLALKVLGCF--L 379 (557)
Q Consensus 314 ~~~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~~--L 379 (557)
.... ..++. ..+..+|-+.+|-.+.+..++- ......+..-+.+..++..-+|- =.|+..+-.. +
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 3221 12222 3478899999999999988763 23333333344455555555542 2333333211 1
Q ss_pred cC------CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccCCCCHHHHHH----HHHhcCC---c
Q 008685 380 FG------REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFKGEDVYSVMK----FLDASGF---Y 446 (557)
Q Consensus 380 ~~------~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~----~~~~~~~---~ 446 (557)
.. -+.+.-..+... .-...+...+..|+.+.|..+..++....++....+.. +....+. .
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~ 317 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRR 317 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHH
Confidence 11 011111111111 11223445578899988888777766644454444333 3333333 2
Q ss_pred hhhcHHHHhhCCCeEEcc
Q 008685 447 PEIGISVLVDKSLIVISN 464 (557)
Q Consensus 447 ~~~~l~~L~~~sLl~~~~ 464 (557)
..+.+++|...|++....
T Consensus 318 ~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 318 FSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHHHhcCeEEeee
Confidence 234688999999998543
No 55
>PRK09087 hypothetical protein; Validated
Probab=98.55 E-value=1.6e-06 Score=81.94 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=89.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.+.+.|+|++|+|||+|++.++.... ..++.. .......... +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~-----------------~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA-----------------AAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh-----------------hhc--
Confidence 46789999999999999998887532 223321 0111111111 111
Q ss_pred eEEEEcCCC----CHHHHHHHhccCCCCCCceEEEEEeCCh---------hhhhccccceEEEcccCCHHHHHHHHHhcc
Q 008685 278 VLIVFDDVS----CFNQIESLIGSLDWFTPRSTIIITTRDK---------QVLRNWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 278 ~LlVlDdv~----~~~~~~~l~~~l~~~~~~~~IiiTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
-+|++||+. +.+.+-.+...+. ..|..+|+|++.. .+...+.....+++++++.++-.+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889994 3334444443333 3467789888743 222333445789999999999999999877
Q ss_pred ccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhh
Q 008685 345 FKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCF 378 (557)
Q Consensus 345 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 378 (557)
..... ...++...-|++.+.|..-.+..+...
T Consensus 167 ~~~~~--~l~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 167 ADRQL--YVDPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HHcCC--CCCHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 43222 233788888999999888777654433
No 56
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=1.3e-06 Score=91.02 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=99.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCC--ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFE--GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.|+|..|+|||+|++++++.+....+ .++++. ...+...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhc-
Confidence 456899999999999999999998764332 223332 1233333333332210 01233344444
Q ss_pred CceEEEEcCCCCH----HHHHHHhccCCC-CCCceEEEEEeCChh-h--------hhccccceEEEcccCCHHHHHHHHH
Q 008685 276 RKVLIVFDDVSCF----NQIESLIGSLDW-FTPRSTIIITTRDKQ-V--------LRNWGVKKIYEMEALEYDHALELFS 341 (557)
Q Consensus 276 k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~IiiTsR~~~-~--------~~~~~~~~~~~l~~L~~~ea~~L~~ 341 (557)
..-+||+||+... ...+.+...+.. ...+..||+||.... . ...+...-.+++++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 3448899999432 222333222211 134557888876432 2 2223334578899999999999999
Q ss_pred hccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhh
Q 008685 342 RHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCF 378 (557)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 378 (557)
+.+-.........++...-|++.++|.|-.+.-+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8774332211344788899999999999888766543
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=7.1e-07 Score=86.02 Aligned_cols=172 Identities=16% Similarity=0.257 Sum_probs=101.9
Q ss_pred CCccccchhHHH---HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEE---IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~---l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..+||.+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-..+- ..|+.... . ...... .+.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSA-t---~a~t~d-vR~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSA-T---NAKTND-VRD 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEec-c---ccchHH-HHH
Confidence 456666554433 333332 24677889999999999999999998755432 34444221 1 122222 222
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEE--EeCChhh---hhccccce
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIII--TTRDKQV---LRNWGVKK 324 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~Iii--TsR~~~~---~~~~~~~~ 324 (557)
++.+... ...+.++|.+|++|.| .+..+-+.|++.. ..|.-++| ||.+++. ........
T Consensus 209 ife~aq~-----------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 209 IFEQAQN-----------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HHHHHHH-----------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccc
Confidence 2222111 2345678999999999 4556666776654 35665554 6776643 12234567
Q ss_pred EEEcccCCHHHHHHHHHhccc---cCCC-----CC---CChHHHHHHHHHHcCCCc
Q 008685 325 IYEMEALEYDHALELFSRHAF---KQIH-----PA---VGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 325 ~~~l~~L~~~ea~~L~~~~~~---~~~~-----~~---~~~~~~~~~i~~~~~G~P 369 (557)
++.|++|+.++...++.+... .... +. .....+.+-++..|.|-.
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 899999999999998887321 2111 11 123345566777777765
No 58
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=8.7e-06 Score=84.81 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=111.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC---------------------CceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF---------------------EGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 233 (557)
..+||-+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.++..+...+ ..++.+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 67999999999999888653 2245889999999999999999998642211 1112221
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
.. + ..+...+. .++...... -..++.-++|+|+++. ......++..+....+.+.+|++|
T Consensus 92 aa---s--~~~vddIR-~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 92 AA---S--NTSVDDIK-VILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cc---c--CCCHHHHH-HHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 00 0 11111111 111111000 0124556899999954 345667777776556777777766
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
.+. .+... ......+++.+++.++..+.+...+...+.. ..++.+..|++.++|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 443 33222 2345789999999999999998877543322 23677889999999988533
No 59
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=5.8e-06 Score=76.13 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=96.5
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------------------CCceEEEEeccccccCCCC
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------------------FEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 244 (557)
.|.+.+..+ .-...+.++|+.|+|||++|..++..+... ++...++.... . ...
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~-~~~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q-SIK 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C-cCC
Confidence 344555432 234678999999999999999999986432 11122221000 0 111
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-hhhc-c
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-W 320 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~ 320 (557)
... ...+...+... -..+.+-++|+||++. ......++..+....+.+.+|++|++.. +... .
T Consensus 78 ~~~-i~~i~~~~~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 78 VDQ-VRELVEFLSRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHH-HHHHHHHHccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 111 11111111110 0124566899999954 3456667766665566777777776542 2221 2
Q ss_pred ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchh
Q 008685 321 GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 321 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 371 (557)
.....+++.+++.++..+.+.+.. ..++.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~g--------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQG--------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHcC--------CCHHHHHHHHHHcCCCccc
Confidence 234689999999999999998861 1257789999999999853
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.3e-06 Score=91.78 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=110.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..+||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+....... .. +-+.-.....+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-----~~-----pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-----AT-----PCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-----CC-----CCCCCHHHHHHHc
Confidence 679999999999999887542 345678999999999999999998764321000 00 0000000000000
Q ss_pred H-------HhcCCcccc-CHHHHHHH-----HccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 K-------LLQDNNVIL-NIALSFRR-----LSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~-------~~~~~~~~~-~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
. +........ +...+.+. ..++.-++|||+++. ......|+..+.......++|++|.+. .+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0 000000000 01111111 235667999999954 456777777666556677776666554 3332
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
. ......+.+.+++.++..+.+...+...... ...+....|++.++|.+--.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 3346789999999999999998765332222 22566788999999988633
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.4e-06 Score=89.06 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=110.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------------------CCceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------------------FEGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 233 (557)
..++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |...+.+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 67899999999999988643 234568899999999999999999875421 11111111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
. .. ..+...+ +.++..+.. .-..+++-++|+|+++. ......|+..+......+.+|++|
T Consensus 95 a----as-~~gvd~i-r~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 95 A----AS-RTGVEET-KEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred c----cc-ccCHHHH-HHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 00 1111111 111111100 01234567999999963 445677777776555666666555
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhh
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVL 375 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 375 (557)
.+. .+... ......+++.+++.++..+.+...+...+. ...++....|++.++|.+- |+..+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 443 33322 334578999999999998888875533222 2236677889999999774 44333
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.1e-05 Score=84.88 Aligned_cols=186 Identities=15% Similarity=0.166 Sum_probs=110.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC-------ceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-------GSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~~ 247 (557)
..++|-+..++.|...+..+ .-.+.+.++|++|+||||+|+.+++.+..... ..|..+ .....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C---------~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC---------TNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC---------hHHHH
Confidence 67899999999998877643 23467899999999999999999988643210 000000 00000
Q ss_pred HHHHHHHHHhc-CCccccCHHHHH---HH-----HccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEe-CChh
Q 008685 248 LQLKLLSKLLQ-DNNVILNIALSF---RR-----LSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITT-RDKQ 315 (557)
Q Consensus 248 l~~~ll~~~~~-~~~~~~~~~~l~---~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTs-R~~~ 315 (557)
+....-..+.. ........+.++ +. ..+++-++|+|+++. ...+..++..+....+.+.+|++| +...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 00000000000 000000111111 11 134567899999965 345777777666555666666544 4334
Q ss_pred hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 316 VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 316 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
+... ......+++.+++.++..+.+...+...+.. ...+....|++.++|.+--+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 4332 2344679999999999999999887543322 22567788999999987443
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.51 E-value=9.6e-06 Score=88.88 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=100.2
Q ss_pred CCccccchhHH---HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVE---EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~---~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|+|.+..+. .|...+.. +....+.|+|++|+||||||+.+++.....|. .+. .. ..+...+ ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~---~~~i~di-r~ 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AV---LAGVKDL-RA 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hh---hhhhHHH-HH
Confidence 56899998874 46666653 34556789999999999999999987654441 111 00 1111111 11
Q ss_pred HHHHHhcCCccccCHHHHHHHH--ccCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEE--eCChh--hhh-cccc
Q 008685 252 LLSKLLQDNNVILNIALSFRRL--SRRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIIT--TRDKQ--VLR-NWGV 322 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiT--sR~~~--~~~-~~~~ 322 (557)
.+. ...+.+ .+++.+|||||++ +..+.+.+++.+. .+..++++ |.+.. +.. ....
T Consensus 96 ~i~-------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 96 EVD-------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred HHH-------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc
Confidence 111 111111 2456799999995 4455566665443 34444443 33331 111 1123
Q ss_pred ceEEEcccCCHHHHHHHHHhccccC-----CCCCCChHHHHHHHHHHcCCCchhh
Q 008685 323 KKIYEMEALEYDHALELFSRHAFKQ-----IHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 323 ~~~~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
...+.+++|+.++...++...+... .......++....|++.+.|+.--+
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 4579999999999999998765310 1112234677888999999975433
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=1.4e-06 Score=76.26 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=70.0
Q ss_pred cccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHh
Q 008685 178 VGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLL 257 (557)
Q Consensus 178 vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 257 (557)
+|++..++.+...+... ..+.+.|+|++|+|||+|++.+++.+......++++. ...... ..... ......
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~----~~~~~-~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLE----GLVVA-ELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhh----hhHHH-HHhhhh-
Confidence 47888999998888642 3568899999999999999999998754333344443 211111 00000 000000
Q ss_pred cCCccccCHHHHHHHHccCceEEEEcCCCCH-----HHHHHHhccCCCC---CCceEEEEEeCChh
Q 008685 258 QDNNVILNIALSFRRLSRRKVLIVFDDVSCF-----NQIESLIGSLDWF---TPRSTIIITTRDKQ 315 (557)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~---~~~~~IiiTsR~~~ 315 (557)
............++.++|+||++.. ..+..++...... ..+..+|+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111222456789999999753 2233333333221 35778888887653
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.8e-05 Score=84.93 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...-... .... ... .-+.-.....+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~~~--~~~-pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QGGI--TAT-PCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--ccCC--CCC-CCCccHHHHHHHc
Confidence 67999999899999988754 2356789999999999999999988753210000 0000 000 0000000000000
Q ss_pred H----Hhc-CCccccCHHHHHHHH--------ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 K----LLQ-DNNVILNIALSFRRL--------SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~----~~~-~~~~~~~~~~l~~~l--------~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
. +.. +.......+.+++.+ .++.-++|||+++. ......++..+......+.+|++|.+. .+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 0 000 000001122222222 23445899999964 345677777776555667777666543 3322
Q ss_pred -ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhH
Q 008685 319 -NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 319 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 373 (557)
.......+++.+++.++..+.+...+...+.. ...+.+..|++.++|.+--+.
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 23345789999999999999998776443322 225678899999999875443
No 66
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=9.8e-06 Score=83.61 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=110.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--CCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--FEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|.+...+.|..++..+ .-...+.++|++|+||||+|..+++.+... +....|....... .... .....+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~---c~~c-~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP---CGEC-ESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC---CCCC-HHHHHH
Confidence 67999999999999988753 234568899999999999999999886432 1000010000000 0000 000000
Q ss_pred HHH-------HhcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCC-hhh
Q 008685 253 LSK-------LLQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRD-KQV 316 (557)
Q Consensus 253 l~~-------~~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~-~~~ 316 (557)
... +........ ++..+.+.+ .+.+-++|+|+++. ...+..++..+....+.+.+|++|.+ ..+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 000 000000000 122222222 23456899999964 34566777666655567776665533 333
Q ss_pred hhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 317 LRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 317 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
... ......+++.+++.++..+.+...+-.... ...++.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 123457899999999999888876533221 23367889999999998854433
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=2.1e-05 Score=83.42 Aligned_cols=188 Identities=17% Similarity=0.121 Sum_probs=108.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|++..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. ... .... .....+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~----Cg~C-~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDC----CNSC-SVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCC----Cccc-HHHHHHHc
Confidence 67999999999999988653 2356789999999999999999998864211 100 000 0000 00000000
Q ss_pred H-------HhcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 K-------LLQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~-------~~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
. +........ +...+.+.. .+++-++|+|+++. ......|+..+....+.+.+|++|... .+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 0 000000000 011111111 12344799999954 345666666655445566666555443 3322
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVL 375 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 375 (557)
. ......+++.+++.++....+...+...+. ....+.+..+++.++|.+- |+..+
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2 334568999999999999988876643321 1225678899999999765 44333
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.5e-05 Score=84.36 Aligned_cols=178 Identities=13% Similarity=0.080 Sum_probs=109.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC---------------------CceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF---------------------EGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 233 (557)
..+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...- .....+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 67999999999999999653 2355788999999999999999998763211 1111111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
.. . ..+...+ +.++..+.- .-..++.-++|+|+++. ......++..+....+.+.+|++|
T Consensus 95 aa----s-~~~v~~i-R~l~~~~~~------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 95 AA----S-RTKVEDT-RELLDNIPY------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cc----c-cCCHHHH-HHHHHHHhh------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 00 0 1111111 111111100 00124556899999964 355666777666556677777766
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhH
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 373 (557)
.+. .+... ......+++.+++.++....+...+-..+.. ...+....|++.++|.+.-+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 554 22222 2334678999999999888777665433322 225667889999999885443
No 69
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.7e-05 Score=86.52 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=109.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC-----c------------------eEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-----G------------------SCF 231 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-----~------------------~~~ 231 (557)
..+||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..... | +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 67999999999999998753 23456889999999999999999988642110 0 001
Q ss_pred EEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEE
Q 008685 232 LQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIII 309 (557)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~Iii 309 (557)
+. ..+ ..++..+. .+...+ ...-..++.-++|||+++.. .....|+..+......+.+|+
T Consensus 94 id---aas--~~~Vd~iR-~l~~~~------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 94 ID---AAS--HGGVDDAR-ELRERA------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred ec---ccc--cCCHHHHH-HHHHHH------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 10 000 00111110 111000 00112345568999999644 456677777766566777776
Q ss_pred EeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 310 TTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 310 TsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
+|.+. .+... ......|++..++.++..+++.+.+-..... ...+....|++.++|.+..+
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 66443 34332 3345789999999999998888765333222 22566788999999988433
No 70
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=5.8e-06 Score=86.13 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=96.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCc--eEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEG--SCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.|+|++|+|||+|+..+++.+...++. +.|+. ...+...+...+... ....+.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHh
Confidence 4569999999999999999999998765432 33432 122233333333211 13334444444
Q ss_pred CceEEEEcCCCCH---H----HHHHHhccCCCCCCceEEEEEeC-Chhhhh--------ccccceEEEcccCCHHHHHHH
Q 008685 276 RKVLIVFDDVSCF---N----QIESLIGSLDWFTPRSTIIITTR-DKQVLR--------NWGVKKIYEMEALEYDHALEL 339 (557)
Q Consensus 276 k~~LlVlDdv~~~---~----~~~~l~~~l~~~~~~~~IiiTsR-~~~~~~--------~~~~~~~~~l~~L~~~ea~~L 339 (557)
+.-+|++||+... . .+-.++..+. ..+..||+||. .+.-+. .+.....+++++.+.+.-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 5668999999532 1 2222222222 23457888874 332221 123345789999999999999
Q ss_pred HHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 340 FSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
+.+.+..... ...++....|++.+.|+.-.|.-+-
T Consensus 272 L~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 272 ARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHHHH
Confidence 9887643222 2336788889999888766555443
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=2.8e-05 Score=83.54 Aligned_cols=189 Identities=17% Similarity=0.186 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCce---EEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGS---CFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+....... .-+. .-+.-.-...
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCcccHHHHH
Confidence 67999999999999998754 2355789999999999999999999864332100 0000 0000000011
Q ss_pred HHHHHhc-----CCccccCHHH---HHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCC-hh
Q 008685 252 LLSKLLQ-----DNNVILNIAL---SFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRD-KQ 315 (557)
Q Consensus 252 ll~~~~~-----~~~~~~~~~~---l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~-~~ 315 (557)
+...... ........+. +.+.+ .+++-++|+|+++.. .....|+..+....+.+.+|++|.+ ..
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1100000 0000011222 22222 234558999999543 4566777666655667777665533 33
Q ss_pred hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 316 VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 316 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
+... ......+++.+++.++....+.+.+-..... ...+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 2345789999999999999998876433322 2257788999999999865543
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=2.1e-06 Score=73.92 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=69.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc-----CCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccC----HH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD-----FEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN----IA 267 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~----~~ 267 (557)
+.+.+.|+|++|+|||+++..+++..... -...+|+. .. . ......+...++..+........+ .+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CP---S-SRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HH---H-HSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eC---C-CCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35689999999999999999999986543 23344554 22 1 236778888888888766555222 45
Q ss_pred HHHHHHccCc-eEEEEcCCCCH---HHHHHHhccCCCCCCceEEEEEeCC
Q 008685 268 LSFRRLSRRK-VLIVFDDVSCF---NQIESLIGSLDWFTPRSTIIITTRD 313 (557)
Q Consensus 268 ~l~~~l~~k~-~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~IiiTsR~ 313 (557)
.+.+.+...+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5555665554 59999999554 33444433323 677788888775
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.4e-05 Score=78.25 Aligned_cols=178 Identities=16% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--------CCceEEEEeccccccCCCChH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--------FEGSCFLQNVREESVRPGGLA 246 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~~ 246 (557)
..++|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... |...+.- ..... ..+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~~~--~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDAAS--NNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecccc--CCCHH
Confidence 67899999999999998753 235688999999999999999998886431 1111111 10000 11111
Q ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-ccc
Q 008685 247 CLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WGV 322 (557)
Q Consensus 247 ~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~~ 322 (557)
.+ ..+....... -..+++-++|+|+++.. ..+..++..+......+.+|+++... .+... ...
T Consensus 92 ~i-~~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 92 DI-RNLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HH-HHHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 11 1111111100 01234568999999543 34666665554434455666555332 22222 223
Q ss_pred ceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 323 KKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 323 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
...+++.+++.++....+...+...+.. ..++.+..+++.++|.+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 4578999999999998888766443322 23678889999999977644
No 74
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.40 E-value=6.2e-06 Score=86.69 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=96.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCc--eEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEG--SCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.|+|++|+|||+|++.+++.+...++. +.++. ...+...+...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN-----TMEEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC-----cHHHHHHHHh-
Confidence 4568999999999999999999998776543 33332 112222233332211 1334444454
Q ss_pred CceEEEEcCCCCH----HHHHHHhccCCC-CCCceEEEEEeCChh-h--------hhccccceEEEcccCCHHHHHHHHH
Q 008685 276 RKVLIVFDDVSCF----NQIESLIGSLDW-FTPRSTIIITTRDKQ-V--------LRNWGVKKIYEMEALEYDHALELFS 341 (557)
Q Consensus 276 k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~IiiTsR~~~-~--------~~~~~~~~~~~l~~L~~~ea~~L~~ 341 (557)
+.-+|+|||++.. ...+.+...+.. ...+..||+||.... . ...+.....+++++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3458999999432 112222221110 123456788776542 1 2223334578999999999999999
Q ss_pred hccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 342 RHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
..+.... ....++....|++.+.|..-.+.-+
T Consensus 291 ~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 291 KKAEEEG--IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 8874322 2233688889999999887765544
No 75
>PRK06620 hypothetical protein; Validated
Probab=98.39 E-value=4.5e-06 Score=78.19 Aligned_cols=136 Identities=11% Similarity=0.042 Sum_probs=82.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCce
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKV 278 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~ 278 (557)
+.+.|+|++|+|||+|++.+++.... .++. . .... . +..+ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~-~~~~----~--------------------~~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------D-IFFN----E--------------------EILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------h-hhhc----h--------------------hHHh-cCC
Confidence 67899999999999999987775421 2221 0 0000 0 0011 234
Q ss_pred EEEEcCCCCHH--HHHHHhccCCCCCCceEEEEEeCChhh-------hhccccceEEEcccCCHHHHHHHHHhccccCCC
Q 008685 279 LIVFDDVSCFN--QIESLIGSLDWFTPRSTIIITTRDKQV-------LRNWGVKKIYEMEALEYDHALELFSRHAFKQIH 349 (557)
Q Consensus 279 LlVlDdv~~~~--~~~~l~~~l~~~~~~~~IiiTsR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 349 (557)
++++||+...+ .+-.+...+. ..|..||+|++.... ...+....++++++++.++-..++.+.+.....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 78899996432 3333333332 346688998875422 122233458999999999988888776542211
Q ss_pred CCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 350 PAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 350 ~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
...++...-|++.+.|.--.+.-+
T Consensus 166 --~l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 166 --TISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred --CCCHHHHHHHHHHccCCHHHHHHH
Confidence 223677888888887776555443
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.39 E-value=6.1e-06 Score=84.75 Aligned_cols=172 Identities=20% Similarity=0.307 Sum_probs=97.3
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|+++.+++|.+.+.. +-..++-|.|+|++|+|||++|+++++..... |+....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~~------- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVG------- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEeeh-------
Confidence 5688999999999886532 11335678999999999999999999976432 211000
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHH-HccCceEEEEcCCCCH------------HH----HHHHhccCCCC--CCc
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRR-LSRRKVLIVFDDVSCF------------NQ----IESLIGSLDWF--TPR 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~------------~~----~~~l~~~l~~~--~~~ 304 (557)
.. +.....+... .....+.+. -...+.+|+||+++.. .. +..++..+... ..+
T Consensus 199 --~~----l~~~~~g~~~--~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 --SE----LVQKFIGEGA--RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred --HH----HhHhhccchH--HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 00 1111100000 001111111 2346789999999643 11 22333333221 235
Q ss_pred eEEEEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 305 STIIITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..||.||........ . .....+++++.+.++-.++|..+..+...... .....+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 567777765433221 1 12457899999999999999887643322211 22456777776653
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.7e-05 Score=85.79 Aligned_cols=190 Identities=15% Similarity=0.137 Sum_probs=111.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.......-+ . .-+.......+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~----~-----~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG----R-----PCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----C-----CCccCHHHHHHhc
Confidence 67999999999999888653 234667899999999999999999886421110000 0 0000001111110
Q ss_pred HHhc-----CCccccCH---HHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 KLLQ-----DNNVILNI---ALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~~~~-----~~~~~~~~---~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
.... ........ ..+.+.+ .+++-++|+|+++. .+....|+..+......+.+|+++.+. .+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 0000 00000111 1112221 23456899999953 355677776666555667777666543 2322
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
. ......+++.+++.++....+...+...+.. ...+.+..|++.++|.+..+....
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 2234678899999999998888776443322 226778899999999997555443
No 78
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.37 E-value=9.9e-06 Score=84.08 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=94.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCC--ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFE--GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.|+|++|+|||+|++++++.+....+ .++++. ...+...+...+... ....+.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-----KMEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-----CHHHHHHHHHh
Confidence 456899999999999999999999876543 233332 112222333333221 13334444443
Q ss_pred CceEEEEcCCCCH----HHHHHHhccCCC-CCCceEEEEEeCCh-hhh--------hccccceEEEcccCCHHHHHHHHH
Q 008685 276 RKVLIVFDDVSCF----NQIESLIGSLDW-FTPRSTIIITTRDK-QVL--------RNWGVKKIYEMEALEYDHALELFS 341 (557)
Q Consensus 276 k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~IiiTsR~~-~~~--------~~~~~~~~~~l~~L~~~ea~~L~~ 341 (557)
.-+|+|||++.. ...+.+...+.. ...+..+|+||... ..+ ..+.....+++++.+.++-.+++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348899999532 111222222211 12355678877643 211 222233578999999999999998
Q ss_pred hccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 342 RHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
..+..... ...++....|++.+.|.+-.+.-+-
T Consensus 279 ~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 279 KKAEEEGL--ELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 88744322 2336788889999888876655443
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.7e-05 Score=79.36 Aligned_cols=183 Identities=16% Similarity=0.125 Sum_probs=108.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.++..+....... . ..+.. ... ...+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~----~pCg~-C~~----C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A----TPCGV-CES----CVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C----Ccccc-cHH----HHHhhc
Confidence 67999999999999998753 2355678999999999999999998764221000 0 00000 000 000000
Q ss_pred H---------HhcCCcccc-CHHHHHHHH-----ccCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCC-hhh
Q 008685 255 K---------LLQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRD-KQV 316 (557)
Q Consensus 255 ~---------~~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~-~~~ 316 (557)
. +........ +...+.+.+ .+++-++|+|++. +......|+..+........+|++|.+ ..+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 000000000 011111111 2455689999995 345667777777655667776665544 333
Q ss_pred hhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 317 LRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 317 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
... ......+++.+++.++..+.+...+...+.. ...+.+..|++.++|.+-
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 322 3345789999999999998888766443322 225677889999999874
No 80
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.4e-05 Score=83.39 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---------------------ceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---------------------GSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~ 233 (557)
..++|-+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+..... .+.++.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 67899998888888888643 22567889999999999999999988642110 011111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
. .. ......+ +.+...+.. .-..+++-++|+|+++.. .....|+..+........+|++|
T Consensus 95 ~----a~-~~~Id~i-R~L~~~~~~------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 95 G----AS-NRGIDDA-KRLKEAIGY------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred c----cc-ccCHHHH-HHHHHHHHh------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 0 00 0111111 111111000 012345679999999543 45666766665444566666666
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc-hhhHhhhhhh
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP-LALKVLGCFL 379 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~a~~L 379 (557)
.+. .+... ......+++.+++.++....+...+...... ...+.+..|++.++|.+ .|+..+...+
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 553 33322 2334678999999999999888766433221 23677889999999975 5666665433
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.8e-05 Score=74.37 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=146.1
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|||-++..++|.-.+.. .....--+.++|++|.||||||.-+++.+...+.. . .+..-..+.++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gDla----- 95 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGDLA----- 95 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhhHH-----
Confidence 6799999988888766643 22346679999999999999999999987654331 1 000000011111
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH-HHHHH-hccCC--------CCCCceE-----------EEEE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN-QIESL-IGSLD--------WFTPRST-----------IIIT 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~l-~~~l~--------~~~~~~~-----------IiiT 310 (557)
.+...|+. .=++.+|.+.... .++++ .+... ..+++++ |=.|
T Consensus 96 ----------------aiLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 96 ----------------AILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ----------------HHHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 11112222 2356677773221 12221 12211 1123333 3357
Q ss_pred eCChhhhhccc--cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHH
Q 008685 311 TRDKQVLRNWG--VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWK 388 (557)
Q Consensus 311 sR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~ 388 (557)
||...+...+. ..-+.+++--+.+|-.+.+.+.+.. ..-+..++.+.+|+++..|-|--..-+-+..+ ++.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR-----Dfa 231 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVR-----DFA 231 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHH-----HHH
Confidence 88654322211 1246688888999999999887632 22233467899999999999964433332221 122
Q ss_pred HHHHh--hhcCChhhHHHHHHHhhcCCChhhHHHHhhhhccc--CCCCHHHHHHHHHhcCCchhhcHH-HHhhCCCeEEc
Q 008685 389 SAINK--LKSILHPSIQEILKISYDGLDDKEKNIFLDVACFF--KGEDVYSVMKFLDASGFYPEIGIS-VLVDKSLIVIS 463 (557)
Q Consensus 389 ~~l~~--l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~~ 463 (557)
.+... +...........+..-=..|+...++.+..+.-.+ ++...+.++..+..+....++.++ -|++.|+++..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhC
Confidence 11111 00000111223333333466777777776665444 336778888777665554454444 68999999988
Q ss_pred cCCeE
Q 008685 464 NNDRI 468 (557)
Q Consensus 464 ~~~~~ 468 (557)
..|+.
T Consensus 312 pRGR~ 316 (332)
T COG2255 312 PRGRI 316 (332)
T ss_pred CCcce
Confidence 77764
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.4e-05 Score=84.23 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--CCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--FEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .....|................+....
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 67999999999999988643 234568899999999999999999886432 110111110000000000000000000
Q ss_pred ---HHHHhcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCC-hhhhhc-
Q 008685 253 ---LSKLLQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRD-KQVLRN- 319 (557)
Q Consensus 253 ---l~~~~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~-~~~~~~- 319 (557)
+..+........ ++..+.+.+ .+.+-++|+|+++.. .....|+..+....+.+.+|++|.+ ..+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000000000000 111222222 234558999999543 4566777766655556666555543 333322
Q ss_pred cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 320 WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 320 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
......+++.+++.++....+.+.+...+. ....+.+..|++.++|..-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 334578999999999998888776533221 1236778899999999665
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.34 E-value=7e-06 Score=79.77 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=81.9
Q ss_pred CccccchhHHHHHHhhcc-------------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC--CceEEEEecccccc
Q 008685 176 QLVGVESRVEEIESLLGV-------------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF--EGSCFLQNVREESV 240 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~-------------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 240 (557)
.++|.+...++|.+.... .......+.++|++|+||||+|+.+++.+.... ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 478888777666543211 122355688999999999999999998764321 1111221 10
Q ss_pred CCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc-cCceEEEEcCCCC----------HHHHHHHhccCCCCCCceEEEE
Q 008685 241 RPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS-RRKVLIVFDDVSC----------FNQIESLIGSLDWFTPRSTIII 309 (557)
Q Consensus 241 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~----------~~~~~~l~~~l~~~~~~~~Iii 309 (557)
... +.....++. ...+.+.+. ...-+|++|+++. .+.+..++..+........+|+
T Consensus 82 ----~~~----l~~~~~g~~-----~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 82 ----RAD----LVGEYIGHT-----AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred ----HHH----hhhhhccch-----HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 011 111111110 111111111 1235899999954 2345666665554444445566
Q ss_pred EeCChhhhh------c-cc-cceEEEcccCCHHHHHHHHHhccc
Q 008685 310 TTRDKQVLR------N-WG-VKKIYEMEALEYDHALELFSRHAF 345 (557)
Q Consensus 310 TsR~~~~~~------~-~~-~~~~~~l~~L~~~ea~~L~~~~~~ 345 (557)
++.....-. . .. ....+.+++++.++-.+++...+.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 654332100 0 11 124688999999999999987764
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=0.00014 Score=76.60 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=108.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-----CCc----------------eEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-----FEG----------------SCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~----------------~~~~~ 233 (557)
..++|-+...+.|...+..+ .-.+...++|+.|+||||+|+.++..+... .++ ...+.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 67899999999999998753 235567899999999999999999876421 000 11110
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceE
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRST 306 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ 306 (557)
..+ ..+... ...+.+.. .+++-++|+|+++.. .....++..+....+...
T Consensus 95 ---aas--~~gvd~------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 95 ---AAS--NRGIDD------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ---Ccc--CCCHHH------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 000 011111 12222222 245669999999643 455666666654455666
Q ss_pred EEEEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 307 IIITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 307 IiiTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+|++|.+. .+... ......+++.+++.++....+...+-..+.. ...+.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66555433 33222 2334688999999999998888866433322 23577888999999987655444
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=85.19 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---------------------ceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---------------------GSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~ 233 (557)
..++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+..... ..+.+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 67899999999999988753 23456789999999999999999988642211 011110
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEe
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTs 311 (557)
. .. ...... .+.++..... .-..+++-++|+|+++.. .....++..+......+.+|++|
T Consensus 95 ~----~~-~~~vd~-ir~l~~~~~~------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 95 A----AS-NTQVDA-MRELLDNAQY------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred c----cc-cCCHHH-HHHHHHHHhh------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 0 00 001111 1111111100 001245669999999644 34666776666555667776666
Q ss_pred CCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 312 RDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 312 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
.+. .+... ......+++.+++.++..+.+...+...+.. ..++.+..|++.++|.+-
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 544 33222 2234688999999999998887765433222 225667889999999875
No 86
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=1.7e-05 Score=84.11 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=94.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCC--ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFE--GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.|+|..|+|||.|+.++++.+...+. .+.++. ...+...+...+... ....+++.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~ 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYRE 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhc
Confidence 345899999999999999999998765432 233332 122233333332221 12334444443
Q ss_pred CceEEEEcCCCCH-------HHHHHHhccCCCCCCceEEEEEeCCh---------hhhhccccceEEEcccCCHHHHHHH
Q 008685 276 RKVLIVFDDVSCF-------NQIESLIGSLDWFTPRSTIIITTRDK---------QVLRNWGVKKIYEMEALEYDHALEL 339 (557)
Q Consensus 276 k~~LlVlDdv~~~-------~~~~~l~~~l~~~~~~~~IiiTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 339 (557)
.=+|||||+... +.+-.++..+. ..+..|||||... .+...+...-.++|.+.+.+.-.++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 347889999432 12223333322 3456788888764 1222334456889999999999999
Q ss_pred HHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 340 FSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+.+++..... ...++.+.-|++.+.++.-.|.-+
T Consensus 455 L~kka~~r~l--~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 455 LRKKAVQEQL--NAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 9987744322 223677888888887775555443
No 87
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=0.0001 Score=77.75 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=111.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CC-------------------ceEEEEe
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FE-------------------GSCFLQN 234 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~-------------------~~~~~~~ 234 (557)
..++|-+...+.|...+..+ .-.+...++|+.|+||||+|+.+++.+... .. ..++.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e-- 90 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE-- 90 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE--
Confidence 67999999999999988654 235677899999999999999999886321 10 00110
Q ss_pred ccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeC
Q 008685 235 VREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 235 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
....+ ..+...+.. +....... -..+++-++|+|+++. .+....|+..+....+.+.+|++|.
T Consensus 91 ldaas--~~gId~IRe-lie~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 91 MDAAS--NRGIDDIRE-LIEQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred ecccc--ccCHHHHHH-HHHHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 00000 111222111 11110000 0013456899999954 3456677766665566777777776
Q ss_pred Chh-hhh-ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHh
Q 008685 313 DKQ-VLR-NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKV 374 (557)
Q Consensus 313 ~~~-~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 374 (557)
+.. +.. .......+++.+++.++..+.+...+...+.. ..++.+..|++.++|.+--+..
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 642 221 12345789999999999999988766443322 2367888999999999854433
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.30 E-value=9.4e-06 Score=90.34 Aligned_cols=174 Identities=13% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 248 (557)
++++||+.+++++...|... ...-+.++|++|+|||++|+.+++++.... ...+|..+... +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~----------l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS----------L 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH----------H
Confidence 57999999999999988653 233467999999999999999999874431 23344322111 1
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH-----------HHHHHHhccCCCCCCceEEEEEeCChhh
Q 008685 249 QLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF-----------NQIESLIGSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~IiiTsR~~~~ 316 (557)
... .......+.....+.+.+ ..++.+|++|++... +....+.+.+. ....++|.+|.....
T Consensus 250 ~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 250 LAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY 323 (731)
T ss_pred hhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH
Confidence 100 000000000122222222 245789999999422 11233334433 223455555554221
Q ss_pred hh-------ccccceEEEcccCCHHHHHHHHHhcccc--CCCCCCChHHHHHHHHHHcC
Q 008685 317 LR-------NWGVKKIYEMEALEYDHALELFSRHAFK--QIHPAVGYEELSSKVMEYAQ 366 (557)
Q Consensus 317 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i~~~~~ 366 (557)
-. .......+++++++.++..+++...... .........+....+++.++
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 11 0112357899999999999999865422 11111223455555666554
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=3.7e-05 Score=80.03 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=88.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
...+.|+|++|+|||+|++++++.+......+.++. ...+...+...+... ....++..++ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHcc-cC
Confidence 356899999999999999999999865544444443 112222333332211 1233444443 34
Q ss_pred eEEEEcCCCCH-------HHHHHHhccCCCCCCceEEEEEeCCh-hh--------hhccccceEEEcccCCHHHHHHHHH
Q 008685 278 VLIVFDDVSCF-------NQIESLIGSLDWFTPRSTIIITTRDK-QV--------LRNWGVKKIYEMEALEYDHALELFS 341 (557)
Q Consensus 278 ~LlVlDdv~~~-------~~~~~l~~~l~~~~~~~~IiiTsR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~L~~ 341 (557)
-+|++||+... +.+-.+...+. ..|..||+||... .. ...+.....+++.+++.++-.+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 58889998432 12222222221 2355788888543 21 2223334688999999999999998
Q ss_pred hccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 342 RHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
+.+-... ....++...-|+..+.|+-
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 8764332 1223566676777777554
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.27 E-value=2.1e-05 Score=88.37 Aligned_cols=176 Identities=12% Similarity=0.126 Sum_probs=100.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEecccccc---CCCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESV---RPGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~---~~~~~ 245 (557)
++++||+.++.++...|... ...-+.++|++|+|||++|..+++++.... ...+|......... ....+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 67999999999999988653 233457999999999999999999875432 12233222221110 01111
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH---------HHH-HHhccCCCCCCceEEEEEeCChh
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN---------QIE-SLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~-~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
..-++.++..+. + .+++++|++|++.... +.. .+.+.+. ....++|-||....
T Consensus 265 e~~lk~ii~e~~-------------~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e 327 (852)
T TIGR03345 265 ENRLKSVIDEVK-------------A--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAE 327 (852)
T ss_pred HHHHHHHHHHHH-------------h--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHH
Confidence 122222222110 0 2468999999994321 111 2334433 23456666666532
Q ss_pred hhh-------ccccceEEEcccCCHHHHHHHHHhcccc--CCCCCCChHHHHHHHHHHcCCCc
Q 008685 316 VLR-------NWGVKKIYEMEALEYDHALELFSRHAFK--QIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 316 ~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.-+ .......+.+++++.+++.+++...... ....-....+....+++.+.+..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 211 1123468999999999999997544321 11112223566677777776554
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.26 E-value=1.2e-05 Score=80.76 Aligned_cols=146 Identities=15% Similarity=0.225 Sum_probs=85.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++..... ...+. .. ......+ ...+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~-----~~~~~~i-~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GS-----DCRIDFV-RNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cC-----cccHHHH-HHHHH
Confidence 67899999999999988753 235678889999999999999999876322 12221 11 1111111 11111
Q ss_pred HHhcCCccccCHHHHHHHHccCceEEEEcCCCCH---HHHHHHhccCCCCCCceEEEEEeCChhhh-hc-cccceEEEcc
Q 008685 255 KLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF---NQIESLIGSLDWFTPRSTIIITTRDKQVL-RN-WGVKKIYEME 329 (557)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~IiiTsR~~~~~-~~-~~~~~~~~l~ 329 (557)
..... ..+.+.+-++|+|+++.. .....+...+.....++.+|+||...... +. ......+.++
T Consensus 90 ~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~ 158 (316)
T PHA02544 90 RFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFG 158 (316)
T ss_pred HHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeC
Confidence 11100 001134568999999644 22233333344345677888888654321 11 1233567777
Q ss_pred cCCHHHHHHHHHh
Q 008685 330 ALEYDHALELFSR 342 (557)
Q Consensus 330 ~L~~~ea~~L~~~ 342 (557)
..+.++..+++..
T Consensus 159 ~p~~~~~~~il~~ 171 (316)
T PHA02544 159 VPTKEEQIEMMKQ 171 (316)
T ss_pred CCCHHHHHHHHHH
Confidence 7888887766554
No 92
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=0.00013 Score=78.19 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=110.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-.....- +.. ......+....-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p-----C~~-C~~C~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP-----CGE-CSSCKSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC-----Ccc-chHHHHHHcCCCC
Confidence 67899999999999998753 2356789999999999999999998864210000000 000 0000000000000
Q ss_pred HHhc-CCccccCHHHHHHH--------HccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cc
Q 008685 255 KLLQ-DNNVILNIALSFRR--------LSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WG 321 (557)
Q Consensus 255 ~~~~-~~~~~~~~~~l~~~--------l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~ 321 (557)
.+.. ........+.+++. ..+++-++|+|++.. ......|+..+....+.+.+|++|.+. .+... ..
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 0000 00000111111111 134566899999954 445777777776556677777666543 33222 23
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
....+++.+++.++..+.+...+...+.. ..++.+..|++.++|.+-.+
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 35678999999999998888766443322 23677888999999988544
No 93
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.3e-05 Score=86.72 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=108.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. ..........-..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p--------C~~C~~~~~~~~D 88 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP--------CQECIENVNNSLD 88 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc--------hhHHHHhhcCCCc
Confidence 67899999999999988753 23567789999999999999999987532111000000 0000000000000
Q ss_pred HHhcCCc--ccc-CHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeC-Chhhhhc-ccc
Q 008685 255 KLLQDNN--VIL-NIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTR-DKQVLRN-WGV 322 (557)
Q Consensus 255 ~~~~~~~--~~~-~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR-~~~~~~~-~~~ 322 (557)
-+..... ... +...+.+.+ .+++-++|+|+++. ......|+..+......+.+|++|. ...+... ...
T Consensus 89 vieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 89 IIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred EEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 0000000 000 012222222 24566999999953 3456677766655455665555554 3344322 334
Q ss_pred ceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHh
Q 008685 323 KKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKV 374 (557)
Q Consensus 323 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 374 (557)
...+++.+++.++..+.+...+-..+.. ...+.+..|++.++|.+- |+..
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5789999999999998888765332211 225668889999999774 4433
No 94
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.7e-05 Score=80.34 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=107.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------Cc-e-------------EEEEe
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EG-S-------------CFLQN 234 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~-~-------------~~~~~ 234 (557)
..++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- .+ . -|+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~- 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE- 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE-
Confidence 67999999999999988643 2246788999999999999999998864320 00 0 0110
Q ss_pred ccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeC
Q 008685 235 VREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 235 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
....+ ..+...+. .+...+. .....+.+-++|+|+++.. .....|+..+......+.+|++|.
T Consensus 95 i~g~~--~~gid~ir-~i~~~l~------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 95 IDGAS--HRGIEDIR-QINETVL------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred eeccc--cCCHHHHH-HHHHHHH------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 00000 01111111 1111100 0011245678999999543 445666666655455666766664
Q ss_pred Ch-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchh
Q 008685 313 DK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 313 ~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 371 (557)
+. .+... ......+++.+++.++..+.+...+-..+.. ..++.+..|++.++|.+--
T Consensus 160 ~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 160 EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRD 218 (451)
T ss_pred ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 33 33222 2345689999999999998888765332211 2367788999999997743
No 95
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=0.00025 Score=76.79 Aligned_cols=190 Identities=18% Similarity=0.157 Sum_probs=109.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+........- .. .-+.-.....+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~---~~-----~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT---PE-----PCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC---CC-----CCcccHHHHHHhc
Confidence 678999999999999887542 24578899999999999999999986432110000 00 0000000001100
Q ss_pred HHhc-----CCccccCHHHHHH---HH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 KLLQ-----DNNVILNIALSFR---RL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~~~~-----~~~~~~~~~~l~~---~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
.... ........+.+++ .+ .+++-++|+|+++.. +....|+..+......+.+|++|.+. .+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 0000 0000011112221 11 234568999999643 45677777666545566666555443 3322
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
. ......+++.+++.++....+.+.+...... ...+.+..|++.++|.+..+..+
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2345678899999999888887765432211 22567889999999988655433
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=0.0003 Score=76.15 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=108.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC----------------------ceEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE----------------------GSCFL 232 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~----------------------~~~~~ 232 (557)
..++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+..... ....+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 67999999999999998653 23567899999999999999999987642110 00000
Q ss_pred EeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEE
Q 008685 233 QNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIIT 310 (557)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiT 310 (557)
. . .. ..+...+. .++..+... -..+++-++|+|+++. ......|+..+......+.+|++
T Consensus 96 d---~-~~-~~~vd~Ir-~li~~~~~~------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 96 D---A-AS-NNSVDDIR-NLIEQVRIP------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred c---c-cc-cCCHHHHH-HHHHHHhhC------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 0 0 00 01111111 111111000 0123455889999954 34566777766655566766655
Q ss_pred e-CChhhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 311 T-RDKQVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 311 s-R~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
| ....+... ......+++.+++.++....+...+...+.. ...+.+..|++.++|..--+
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 5 43444332 3345789999999999999998766433322 22567889999999977543
No 97
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=8.6e-05 Score=74.13 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=94.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC---------------------CceEEEEeccccccCCCChHHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF---------------------EGSCFLQNVREESVRPGGLACLQLKLLSK 255 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 255 (557)
-...+.++|+.|+|||++|..++..+--+- +...++.... ... .-....+ +++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~-~i~id~i-R~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK-TIKVDQV-RELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC-CCCHHHH-HHHHHH
Confidence 366789999999999999999998864321 1112221000 000 0011111 111111
Q ss_pred HhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEcccC
Q 008685 256 LLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEMEAL 331 (557)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l~~L 331 (557)
+... -..+++-++|+|+++. .+....++..+....+++.+|+||.+.. +++. .+....+.+.++
T Consensus 98 ~~~~------------~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 98 VVQT------------AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred Hhhc------------cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 1100 0123344667899964 4566777777765567788888887763 3322 344578999999
Q ss_pred CHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 332 EYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 332 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+.+++.+.+...... ...+.+..++..++|.|+....+
T Consensus 166 ~~~~~~~~L~~~~~~------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 166 SNEESLQWLQQALPE------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CHHHHHHHHHHhccc------CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999875311 11455677889999999755444
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.17 E-value=2.6e-05 Score=87.98 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-C-----CceEEEEeccccccC---CCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-F-----EGSCFLQNVREESVR---PGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~---~~~~ 245 (557)
.+++||+++++++.+.|.... ..-+.++|++|+|||++|..++.++... - ...+|..+....... ...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 569999999999999997532 3345799999999999999999987532 1 233443322111100 0001
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCHH---------HHHHH-hccCCCCCCceEEEEEeCCh
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCFN---------QIESL-IGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l-~~~l~~~~~~~~IiiTsR~~ 314 (557)
... ...+.+.+ ..++.+|++|++.... ....+ .+.+. ....++|.+|...
T Consensus 257 e~r-----------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ 317 (821)
T CHL00095 257 EER-----------------LKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLD 317 (821)
T ss_pred HHH-----------------HHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHH
Confidence 111 11122222 3467899999993211 12222 23332 2234566666554
Q ss_pred hhhh-------ccccceEEEcccCCHHHHHHHHHhccc--cCCCCCCChHHHHHHHHHHcCC
Q 008685 315 QVLR-------NWGVKKIYEMEALEYDHALELFSRHAF--KQIHPAVGYEELSSKVMEYAQG 367 (557)
Q Consensus 315 ~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~--~~~~~~~~~~~~~~~i~~~~~G 367 (557)
..-. .......+.++..+.++...++..... .........++....+++.++|
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 3211 112345788899999998888765321 1111111224566666666653
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=0.00021 Score=76.78 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=108.1
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|.+...+.|.+.+..+ .-.+.+.++|+.|+|||++|+.++..+...-... ...+.. .. ....+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~~pC~~-C~----~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----GEPCNE-CE----ICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCc-cH----HHHHHhc
Confidence 67999999999999998754 2356788999999999999999998753211000 000000 00 0000000
Q ss_pred HH-------hcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhh
Q 008685 255 KL-------LQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLR 318 (557)
Q Consensus 255 ~~-------~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~ 318 (557)
.. ........ ....+.+.. .++.-++|+|+++.. .....|+..+........+|++|... .+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 00 00000000 011222221 245668899999643 45667776665445555556555433 3332
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
. ......+++.+++.++..+.+...+-..+.. ...+.+..|++.++|.+.-+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 2345678999999999999888766433322 22577888999999887543
No 100
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.12 E-value=5.8e-06 Score=71.00 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=46.6
Q ss_pred eEEEecccccccCchHHHHHHHHhhC-------CCce----------EeeC-CCCCCCcchHHHHHHHHhhceEEEEecC
Q 008685 2 MFFLSFRGEDTRDNFASHLFSALSQK-------SIET----------FIDD-QLNRGDEISESLMNAIEASAISLIIFSE 63 (557)
Q Consensus 2 dvFis~~~~d~~~~~~~~l~~~l~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~ 63 (557)
.|||||++.|.. ..+..|...+... .+.. +.+. +....+.+...|.++|..|.++||++|+
T Consensus 2 ~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~ 80 (130)
T PF08937_consen 2 KVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP 80 (130)
T ss_dssp ---------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred CccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 589999999944 2677777777663 2221 1111 2233457899999999999999999999
Q ss_pred CccCchhhHHHHHHHHhhhcccCceEEeE
Q 008685 64 GYASSRWCLDELLKILDCRKEYAQIVIPV 92 (557)
Q Consensus 64 ~y~~S~~c~~El~~~~~~~~~~~~~v~Pv 92 (557)
+-..|.|+..|+.++++ .+..|+.|
T Consensus 81 ~T~~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 81 NTAKSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp T----HHHHHHHHHHTT----T---EEEE
T ss_pred CcccCcHHHHHHHHHHH----CCCCEEEE
Confidence 99999999999999876 33446666
No 101
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.10 E-value=4.9e-05 Score=79.61 Aligned_cols=164 Identities=18% Similarity=0.314 Sum_probs=90.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-----CceEEEE
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-----EGSCFLQ 233 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~ 233 (557)
|...-..+.|.+..++++.+.+.. +-..++-+.|+|++|+|||++|+.+++.+...+ ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 333335678899999998876531 112356689999999999999999999876542 1233332
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHH-HccCceEEEEcCCCCHH--------------HHHHHhccC
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRR-LSRRKVLIVFDDVSCFN--------------QIESLIGSL 298 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--------------~~~~l~~~l 298 (557)
+..... ...+..-....+..+ ....++. ..+++++|+||+++... .+..++..+
T Consensus 257 -v~~~eL-l~kyvGete~~ir~i---------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 257 -IKGPEL-LNKYVGETERQIRLI---------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred -ccchhh-cccccchHHHHHHHH---------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 111000 000000000001110 0111111 23478999999995321 123444444
Q ss_pred CCCC--CceEEEEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhcc
Q 008685 299 DWFT--PRSTIIITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 299 ~~~~--~~~~IiiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.... .+..||.||.....+.. + .....++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 34445556644433221 1 224568999999999999999876
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.10 E-value=4.9e-05 Score=77.81 Aligned_cols=172 Identities=16% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.+...++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~--~------- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV--G------- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe--h-------
Confidence 5688999988888876531 113467799999999999999999998754332 1111 0
Q ss_pred ChHHHHHHHHHHHhcCCccccCHH-HHHHHHccCceEEEEcCCCCH------------H----HHHHHhccCCCC--CCc
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIA-LSFRRLSRRKVLIVFDDVSCF------------N----QIESLIGSLDWF--TPR 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~------------~----~~~~l~~~l~~~--~~~ 304 (557)
. .+.....+... .... .+.......+.+|+||+++.. . .+..++..+... ..+
T Consensus 213 --s----~l~~k~~ge~~--~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 213 --S----EFVQKYLGEGP--RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred --H----HHHHHhcchhH--HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 0 01111111100 0011 112223457899999998532 1 122333333322 245
Q ss_pred eEEEEEeCChhhhhc--c---ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 305 STIIITTRDKQVLRN--W---GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..||+||........ . .....++++..+.++-..+|..+........ .-....+++.+.|..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 667888776543321 1 2345788998898888888876653322111 122456677776654
No 103
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.08 E-value=0.00015 Score=73.38 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=93.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
....+.|||..|.|||.|++++.+......+....+. .........+...+... ..+.+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~-----~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN-----EMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh-----hHHHHHHhh--c
Confidence 3678999999999999999999999888777544443 11122222333322221 144555555 3
Q ss_pred ceEEEEcCCCC-------HHHHHHHhccCCCCCCceEEEEEeCChh---------hhhccccceEEEcccCCHHHHHHHH
Q 008685 277 KVLIVFDDVSC-------FNQIESLIGSLDWFTPRSTIIITTRDKQ---------VLRNWGVKKIYEMEALEYDHALELF 340 (557)
Q Consensus 277 ~~LlVlDdv~~-------~~~~~~l~~~l~~~~~~~~IiiTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~ 340 (557)
-=++++||++- .+.+-.+...+. ..|-.||+||+... +...+...-.+++.+.+.+....++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 34899999932 222333333333 34448999996542 2223344578999999999999999
Q ss_pred HhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 341 SRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
...+...... ..++...-|++....+
T Consensus 254 ~kka~~~~~~--i~~ev~~~la~~~~~n 279 (408)
T COG0593 254 RKKAEDRGIE--IPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHhhcc
Confidence 9866433222 2255566666655544
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00029 Score=76.01 Aligned_cols=177 Identities=16% Similarity=0.216 Sum_probs=108.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC-----c-eE-------------EEEec
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-----G-SC-------------FLQNV 235 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-----~-~~-------------~~~~~ 235 (557)
..++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-. + .| |+. .
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e-i 93 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE-I 93 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee-e
Confidence 67999999999999988653 23567789999999999999999988542110 0 00 000 0
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEE
Q 008685 236 REESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTII 308 (557)
Q Consensus 236 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~Ii 308 (557)
...+ ..+... ...+.+.+ .++.-++|+|+++. ......|+..+....+.+.+|
T Consensus 94 d~~s--~~~v~~------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI 153 (576)
T PRK14965 94 DGAS--NTGVDD------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI 153 (576)
T ss_pred eccC--ccCHHH------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 0000 001111 12222222 23445899999954 345666776666555677766
Q ss_pred EEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc-hhhHhh
Q 008685 309 ITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP-LALKVL 375 (557)
Q Consensus 309 iTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 375 (557)
++|.+. .+... ......+++.+++.++....+...+...+.. ...+.+..|++.++|.. .|+..+
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655443 33322 2345678899999999988887765333222 22677888999999976 444444
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.06 E-value=6.8e-05 Score=84.56 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEecccccc---CCCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESV---RPGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~---~~~~~ 245 (557)
++++||+.++.++...|... ...-+.++|++|+|||+||..++.++.... ...+|......... ....+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 67999999999999988753 233566999999999999999999875432 22333322221100 00111
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH---------HHHH-HhccCCCCCCceEEEEEeCChh
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN---------QIES-LIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~-l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
...+..++..+. -.+++.+|++|++.... +... +.+.+. ....++|.+|....
T Consensus 256 e~~lk~~~~~~~---------------~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e 318 (857)
T PRK10865 256 EERLKGVLNDLA---------------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDE 318 (857)
T ss_pred HHHHHHHHHHHH---------------HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHH
Confidence 111111111110 12468999999994332 1223 333332 22345565555443
Q ss_pred hhh-------ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 316 VLR-------NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 316 ~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
... .....+.+.+...+.++...++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 211 01122356677778888888886543
No 106
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00062 Score=67.61 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=111.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------------CCceEEEEeccccc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------------FEGSCFLQNVREES 239 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 239 (557)
..++|-+...+.|...+..+ .-.+...++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46899999999999998754 225789999999999999999999885322 23334443110000
Q ss_pred cCCCChHHHHHHHHHHHh--cCCccccCH---HHHHHHHc-----cCceEEEEcCCCCH--HHHHHHhccCCCCCCceEE
Q 008685 240 VRPGGLACLQLKLLSKLL--QDNNVILNI---ALSFRRLS-----RRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTI 307 (557)
Q Consensus 240 ~~~~~~~~l~~~ll~~~~--~~~~~~~~~---~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~I 307 (557)
..... .......+ ......+.+ ..+.+.+. +++-++|+|+++.. .....++..+...+ .+.+
T Consensus 83 --g~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 --GKLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred --ccccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000 00000111 011111222 33333332 45668999999644 45566666665444 4455
Q ss_pred EEEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 308 IITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 308 iiTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
|++|.+. .+++. ......+++.+++.++..+.+....... ........++..++|.|.....+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHHH
Confidence 5555444 44332 3456789999999999999999864211 111124688999999997665443
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.06 E-value=6.6e-05 Score=84.98 Aligned_cols=152 Identities=9% Similarity=0.113 Sum_probs=85.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 248 (557)
.+++||+.++.++...|... ...-+.++|++|+|||++|..+++++...+ ...+|......... .....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a-~~~~~-- 247 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA-GAKYR-- 247 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-cchhh--
Confidence 67999999999999998753 233456899999999999999999875432 22333321111000 00000
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHc--cCceEEEEcCCCCHH---------HHHHH-hccCCCCCCceEEEEEeCChhh
Q 008685 249 QLKLLSKLLQDNNVILNIALSFRRLS--RRKVLIVFDDVSCFN---------QIESL-IGSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l-~~~l~~~~~~~~IiiTsR~~~~ 316 (557)
.........+.+.+. +++.+|++|++.... +...+ .+.+. .....+|.+|.....
T Consensus 248 -----------g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 248 -----------GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEY 314 (852)
T ss_pred -----------hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHH
Confidence 000001122222222 468999999995321 12222 23322 223455555554432
Q ss_pred hh-------ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 317 LR-------NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 317 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
-. .......+.++..+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 11123568899999999999887653
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=4.2e-05 Score=78.87 Aligned_cols=173 Identities=19% Similarity=0.244 Sum_probs=96.5
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.+..+++|.+.+.. +-...+-+.|+|++|+|||+||+.+++.....|- .+. . +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~--~--s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV--G--S---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe--c--c----
Confidence 4568999999998886632 1123567889999999999999999998754431 111 0 0
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH----------------HHHHHhccCCCC--CCce
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN----------------QIESLIGSLDWF--TPRS 305 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~~ 305 (557)
.+ .....+... ..-...+.....+.+.+|+||+++... .+..++..+..+ ..+.
T Consensus 252 eL-------~~k~~Ge~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 252 EL-------IQKYLGDGP-KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hh-------hhhhcchHH-HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 00 000000000 000111112224568899999984210 122333333221 2356
Q ss_pred EEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 306 TIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.||+||.....+.. ......++++..+.++..++|..+...-.... .-....++..+.|.-
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~---dvdl~~la~~t~g~s 389 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE---DVDLEEFIMAKDELS 389 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc---CcCHHHHHHhcCCCC
Confidence 77888776543322 12346789999999999999987763322111 112456666666544
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=0.00018 Score=67.23 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=41.1
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
..++|.+.+.+.|.+.... ......-+.+||..|+|||+|++++.+....+-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 6799999999998765432 123456688999999999999999999876654
No 110
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.04 E-value=0.00011 Score=72.23 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=71.7
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccC--CceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDF--EGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
.-+.++|++|+|||++|+.++..+.... ....|+... .. .+...+.+... .....+.+.. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~----~l~~~~~g~~~--~~~~~~~~~a--~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RD----DLVGQYIGHTA--PKTKEILKRA--M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HH----HHhHhhcccch--HHHHHHHHHc--c
Confidence 3688999999999999999888765421 111233201 01 11112211111 0111111222 3
Q ss_pred ceEEEEcCCCCH-----------HHHHHHhccCCCCCCceEEEEEeCChhhhhc--cc------cceEEEcccCCHHHHH
Q 008685 277 KVLIVFDDVSCF-----------NQIESLIGSLDWFTPRSTIIITTRDKQVLRN--WG------VKKIYEMEALEYDHAL 337 (557)
Q Consensus 277 ~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~--~~------~~~~~~l~~L~~~ea~ 337 (557)
.-+|+||++... +....++..+.....+.+||+++.....-.. .. ....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468999999522 2344555555444456677777654321111 11 1357899999999999
Q ss_pred HHHHhccc
Q 008685 338 ELFSRHAF 345 (557)
Q Consensus 338 ~L~~~~~~ 345 (557)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887663
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.03 E-value=2.9e-05 Score=73.80 Aligned_cols=176 Identities=16% Similarity=0.214 Sum_probs=111.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc--cCCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS--DFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|-+..++.|.+.+.. ...+....+|++|.|||+-|..++..+-. -|++++.-.+... ..+..-....+
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd----erGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD----ERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc----cccccchhhhh
Confidence 7799999999999998875 45678899999999999999999988533 2554443221111 11111000000
Q ss_pred HHHHhcCCccccCHHHHHHHH---c---cCc-eEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhh-ccc
Q 008685 253 LSKLLQDNNVILNIALSFRRL---S---RRK-VLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLR-NWG 321 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l---~---~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~-~~~ 321 (557)
. +.+.+.... . .++ -++|||+++.. +.|..+...+..+...++.|+.+-.- .+.. ...
T Consensus 110 -k----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 -K----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -c----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0 011111111 0 123 48899999754 56888887777767777765544433 2211 122
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
....+..++|..++..+-+...+-..+..- ..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcH
Confidence 345788999999999998888875554333 3677889999998863
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=6e-05 Score=64.74 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEeccCCCchhHHHHHHHHHhh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 113
>PRK08116 hypothetical protein; Validated
Probab=97.99 E-value=5.1e-05 Score=73.69 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=57.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCce
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKV 278 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~ 278 (557)
..+.|+|.+|+|||.||.++++.+..+...++++. ...+...+........ ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~--~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG--KEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc--cccHHHHHHHhcCCC-
Confidence 45899999999999999999999876644444443 1222333322222111 112334455555444
Q ss_pred EEEEcCCC--CHH--HHHHHhccCCC-CCCceEEEEEeCCh
Q 008685 279 LIVFDDVS--CFN--QIESLIGSLDW-FTPRSTIIITTRDK 314 (557)
Q Consensus 279 LlVlDdv~--~~~--~~~~l~~~l~~-~~~~~~IiiTsR~~ 314 (557)
||||||+. ... ....+...+.. ...+..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999992 221 22223222221 23556788888654
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00027 Score=68.84 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=102.2
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+=|-++++++|.+...- +-+.++-|.+||++|.|||-||++++++... .|+..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEecc-------
Confidence 4455788888888876532 2245677999999999999999999997543 3443221
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCHH----------------HHHHHhccCCCCCC--c
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCFN----------------QIESLIGSLDWFTP--R 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~~~--~ 304 (557)
.++.++..++...- +..+.+.. .+.+.+|++|.++... .+-.|+..++.|.+ .
T Consensus 219 ------SElVqKYiGEGaRl--VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 ------SELVQKYIGEGARL--VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ------HHHHHHHhccchHH--HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 13334444332111 22233333 3578999999994311 24456677776654 4
Q ss_pred eEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 305 STIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
.+||..|-..+.+.. -.....++++.-+.+.-.++|.-++.+=.... .-..+.+++.|.|.-=
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~---dvd~e~la~~~~g~sG 358 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLAD---DVDLELLARLTEGFSG 358 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCcc---CcCHHHHHHhcCCCch
Confidence 578887765554322 12346788885555555566665553221111 1124577777887753
No 115
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.96 E-value=0.00064 Score=69.98 Aligned_cols=239 Identities=20% Similarity=0.154 Sum_probs=133.5
Q ss_pred cchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcC
Q 008685 180 VESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQD 259 (557)
Q Consensus 180 R~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 259 (557)
|..-+.++...+... ..++.|.|+-++|||||++.+....... .+++...... .....+ .+.+....
T Consensus 22 ~~~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~----~~~~~l-~d~~~~~~-- 88 (398)
T COG1373 22 RRKLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLR----LDRIEL-LDLLRAYI-- 88 (398)
T ss_pred HHhhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchh----cchhhH-HHHHHHHH--
Confidence 334455555555422 2299999999999999997776665444 4444322211 111111 11111111
Q ss_pred CccccCHHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhhc------cccceEEEcccCCH
Q 008685 260 NNVILNIALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLRN------WGVKKIYEMEALEY 333 (557)
Q Consensus 260 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~------~~~~~~~~l~~L~~ 333 (557)
..-..++..++||.|.....|+..+..+...++. +|++|+-+...... .+....+++.||+.
T Consensus 89 -----------~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 89 -----------ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -----------HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 1111267899999999999999888877665666 88888877654322 23456889999999
Q ss_pred HHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHhhhcCChhhHHHHHHHhh-cC
Q 008685 334 DHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINKLKSILHPSIQEILKISY-DG 412 (557)
Q Consensus 334 ~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~-~~ 412 (557)
.|-..+-.... ... .. +..-.-.-.+||.|.++..-...-. ........+. .++.+..- ..
T Consensus 157 ~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~~~~~ 218 (398)
T COG1373 157 REFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERGKIEN 218 (398)
T ss_pred HHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHcCccc
Confidence 99876543111 000 11 1123334458999988864332111 0011111111 11111111 11
Q ss_pred CChhhHHHHhhhhcc-cCCCCHHHHHHHHH-hcCCchhhcHHHHhhCCCeEE
Q 008685 413 LDDKEKNIFLDVACF-FKGEDVYSVMKFLD-ASGFYPEIGISVLVDKSLIVI 462 (557)
Q Consensus 413 L~~~~k~~l~~la~f-~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~sLl~~ 462 (557)
. +..+.++..++-. +..++...+...+. -+......+++.|.+.-++..
T Consensus 219 ~-~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 219 A-DLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred H-HHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 1 3455555555544 45588888888883 444445667888888887763
No 116
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.94 E-value=0.00013 Score=79.26 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 6799999999988877643 2345799999999999999999987653
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.93 E-value=8e-05 Score=82.17 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=85.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 248 (557)
++++||+.++.++...|.... ..-+.|+|++|+|||++|+.+++.+...- ...+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHHHH
Confidence 569999999999999887632 23456899999999999999998864321 2222321 11111
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------HHHHHHh-ccCCCCCCceEEEEEeCChhh
Q 008685 249 QLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------NQIESLI-GSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~-~~l~~~~~~~~IiiTsR~~~~ 316 (557)
+.........+.....+.+.+ +.++.+|++|++... .+...++ +.+. ....++|.+|..+..
T Consensus 254 ----laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_pred ----hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH
Confidence 000000000000122222222 345789999999422 1222222 3322 233455555554332
Q ss_pred hh-------ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 317 LR-------NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 317 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.. .....+.+.+++++.+++.+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 01233579999999999999998643
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.93 E-value=0.00012 Score=77.97 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCccccchhHHHHHHhhc---c-------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLG---V-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~---~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|-+...+++.+.+. . +....+-+.++|++|+|||+||+.++......| +. + .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i--------~ 120 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I--------S 120 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c--------c
Confidence 568888877766665442 1 122345689999999999999999998753221 11 0 0
Q ss_pred hHHHHHHHHHHHhcCCccccC-HHHHHHHHccCceEEEEcCCCCHH----------------HHHHHhccCCCC--CCce
Q 008685 245 LACLQLKLLSKLLQDNNVILN-IALSFRRLSRRKVLIVFDDVSCFN----------------QIESLIGSLDWF--TPRS 305 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~~ 305 (557)
...+. ....+.. ... ...+.......+.+|+||+++... .+..++..+... ..+.
T Consensus 121 ~~~~~----~~~~g~~--~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 121 GSDFV----EMFVGVG--ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHHHH----HHHhccc--HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 01111 1110000 001 112222334567899999994321 122333333322 2344
Q ss_pred EEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhh
Q 008685 306 TIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVL 375 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 375 (557)
.||.||........ ......+.++..+.++-.+++..+........ ......+++.+.|. +--|..+
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 55666655432111 12346788999999888888887764332221 23356788888874 3334433
No 119
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00073 Score=66.94 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=100.8
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------------------CceEEEEeccccccCCCC
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------------------EGSCFLQNVREESVRPGG 244 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------------------~~~~~~~~~~~~~~~~~~ 244 (557)
..++|...+..+ .-...+.++|+.|+||+++|..+++.+-.+- +...++....+ ..+
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~----~~~ 86 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPN----RTG 86 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCC----ccc
Confidence 345555555432 2356789999999999999999998753221 11111110000 000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHH---HH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFR---RL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~---~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
. .....+.++.+++ .+ .++.-++|+|+++.. .....++..+....+++.+|++|.+.
T Consensus 87 ~-------------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 87 D-------------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred c-------------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 0 0000112233322 22 245569999999654 45666776666556788777777654
Q ss_pred -hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 315 -QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 315 -~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
.+++. .+....+.+.+++.+++.+.+.... . + .+.+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 33333 3456789999999999999987642 1 1 3446788999999998665443
No 120
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.91 E-value=2.9e-05 Score=74.13 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHHHHHhcCC-cccc--C-------
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDN-NVIL--N------- 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-~~~~--~------- 265 (557)
..+.++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ......++..+...+.... +... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4568899999999999999999998754 58888898755542 2456666666622222111 1111 0
Q ss_pred HHHHHH-HHccCceEEEEcCCCC
Q 008685 266 IALSFR-RLSRRKVLIVFDDVSC 287 (557)
Q Consensus 266 ~~~l~~-~l~~k~~LlVlDdv~~ 287 (557)
...... .-.++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 111111 1247899999999943
No 121
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.90 E-value=2.5e-05 Score=78.01 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=57.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcccc-C---------
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVIL-N--------- 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~-~--------- 265 (557)
..+..+|+|++|+||||||+++++.+.. +|+..+|+..+++. ......++..+...+........ .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4567899999999999999999998765 68999999876653 33455666665432221111111 0
Q ss_pred HHHHHHH-HccCceEEEEcCCCCH
Q 008685 266 IALSFRR-LSRRKVLIVFDDVSCF 288 (557)
Q Consensus 266 ~~~l~~~-l~~k~~LlVlDdv~~~ 288 (557)
.+..+.. ..+++++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111111 2578999999999443
No 122
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.89 E-value=0.00052 Score=65.33 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=45.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
...+.++|.+|+|||+||.++++.+......++++. ...+...+-.... . .......+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~-~--~~~~~~~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFS-N--SETSEEQLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHh-h--ccccHHHHHHHhc-cC
Confidence 457899999999999999999999876655555553 1222222222221 1 1112334445555 34
Q ss_pred eEEEEcCC
Q 008685 278 VLIVFDDV 285 (557)
Q Consensus 278 ~LlVlDdv 285 (557)
=+|||||+
T Consensus 164 dlLvIDDi 171 (244)
T PRK07952 164 DLLVIDEI 171 (244)
T ss_pred CEEEEeCC
Confidence 48888999
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=97.88 E-value=0.00011 Score=79.48 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=95.7
Q ss_pred CCccccchhHHHHHHhh---ccc-------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLL---GVE-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L---~~~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.++..+++.+.+ ... ....+-+.++|++|+|||+||+.++...... |+. +.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-is-------- 248 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-IS-------- 248 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-cc--------
Confidence 56888887777766554 221 1224568999999999999999999875322 121 00
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC--CCceE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF--TPRST 306 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ 306 (557)
...+.... .+.. ...-...+.......+++|+||+++.. ..+..++..+..+ ..+..
T Consensus 249 ~s~f~~~~----~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 249 GSEFVEMF----VGVG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHHHHHh----hhhh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 00010000 0000 000012233344567899999999532 1233444333322 23455
Q ss_pred EEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCC
Q 008685 307 IIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQG 367 (557)
Q Consensus 307 IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 367 (557)
||.||........ ......+.++..+.++-.+++..++..... ........+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 6666655433221 112367888888999999999887744221 123456678888887
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.87 E-value=0.00035 Score=68.55 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=72.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc-C-CceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD-F-EGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+.++|++|+|||++|+.+++..... + ...-|+. . ... .+.....+.... ....+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v-----~~~----~l~~~~~g~~~~--~~~~~l~~--a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V-----TRD----DLVGQYIGHTAP--KTKEVLKK--A 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e-----cHH----HHHHHHhccchH--HHHHHHHH--c
Confidence 3458899999999999999999875432 1 1111222 0 011 122222221110 01111111 1
Q ss_pred CceEEEEcCCCC-----------HHHHHHHhccCCCCCCceEEEEEeCChhhhhc------c--ccceEEEcccCCHHHH
Q 008685 276 RKVLIVFDDVSC-----------FNQIESLIGSLDWFTPRSTIIITTRDKQVLRN------W--GVKKIYEMEALEYDHA 336 (557)
Q Consensus 276 k~~LlVlDdv~~-----------~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~------~--~~~~~~~l~~L~~~ea 336 (557)
..-+|++|++.. .+....+...+.....+..||+++........ . .....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 235999999953 23345555555444456677777654322110 0 1235789999999999
Q ss_pred HHHHHhcccc
Q 008685 337 LELFSRHAFK 346 (557)
Q Consensus 337 ~~L~~~~~~~ 346 (557)
.+++...+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 125
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.87 E-value=0.002 Score=67.72 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCccccchhHHHHHHhh---cc-----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC-h
Q 008685 175 NQLVGVESRVEEIESLL---GV-----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG-L 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L---~~-----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~ 245 (557)
..+-|.+...+.+.... .. +-..++-|.++|++|+|||.+|+.+++.....| +............+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChH
Confidence 45778776666555421 11 123456799999999999999999999764322 11111100000000 0
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH--------------HHHHHhccCCCCCCceEEEEEe
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN--------------QIESLIGSLDWFTPRSTIIITT 311 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~l~~~~~~~~IiiTs 311 (557)
......+ +...-...+++|++|+++... .+..++..+.....+.-||.||
T Consensus 304 e~~l~~~----------------f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 304 ESRMRQM----------------IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred HHHHHHH----------------HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1111111 111123468999999995321 1122222222223344566677
Q ss_pred CChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 312 RDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 312 R~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.+...++. -.....+.++.-+.++-.++|..+..+..... ........+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 65532221 12345788888889998888887764422111 11223556777766654
No 126
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.86 E-value=2e-05 Score=69.60 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=55.6
Q ss_pred eEEEecccccc-cCchHHHHHHHHhhC-CCceEeeC-CCCC--CCcchHHHHHHHHhhceEEEEecCCc
Q 008685 2 MFFLSFRGEDT-RDNFASHLFSALSQK-SIETFIDD-QLNR--GDEISESLMNAIEASAISLIIFSEGY 65 (557)
Q Consensus 2 dvFis~~~~d~-~~~~~~~l~~~l~~~-g~~~~~d~-~~~~--g~~~~~~~~~ai~~s~~~i~v~S~~y 65 (557)
-|||||++... ...+|..|+..|++. |+.|.+|. +... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 38999999554 446899999999999 99999998 6643 77899999999999999999999765
No 127
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.83 E-value=0.0004 Score=67.07 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCccccc---hhHHHHHHhhccc-CCCcEEEEEeccCCCchhHHHHHHHHHhhccCC------ceEEEEeccccccCCCC
Q 008685 175 NQLVGVE---SRVEEIESLLGVE-WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE------GSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~---~~l~~l~~~L~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 244 (557)
+.+||-. ..++.|.+++... ....+.+.|+|.+|+|||++++++.......++ .++.+. .....+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCC
Confidence 5566654 3456666767653 344678999999999999999999987544332 122232 222567
Q ss_pred hHHHHHHHHHHHhcCCccccCH----HHHHHHHcc-CceEEEEcCCCCH-----HHHHHHhccCCCCC---CceEEEEEe
Q 008685 245 LACLQLKLLSKLLQDNNVILNI----ALSFRRLSR-RKVLIVFDDVSCF-----NQIESLIGSLDWFT---PRSTIIITT 311 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~----~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~---~~~~IiiTs 311 (557)
...+...++..+........+. ......++. +.-+||+|++.+. ..-..++..+...+ .=+-|.+-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 7888888888887765444432 222344443 3459999999442 22222322222222 223344444
Q ss_pred CChhhhhc-----cccceEEEcccCCHHH-HHHHHHhcc---ccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 312 RDKQVLRN-----WGVKKIYEMEALEYDH-ALELFSRHA---FKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 312 R~~~~~~~-----~~~~~~~~l~~L~~~e-a~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
++...+-. .+....+.++....++ ...|+.... .-.....-...+.+..|...++|+.--+..+
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 43321111 1123466777766543 444443321 1111222234688899999999987555433
No 128
>PRK12377 putative replication protein; Provisional
Probab=97.82 E-value=7.6e-05 Score=71.17 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...+.|+|++|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999999876655555554
No 129
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0013 Score=61.31 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=99.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccC--H----HHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN--I----ALS 269 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~--~----~~l 269 (557)
++.+++.++|.-|.|||.++++....+...=-.++.+. ....+...+...+...+......... . ..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 45679999999999999999955544332211222221 11334455555555555552222211 1 222
Q ss_pred HHHH-ccCc-eEEEEcCCCC--HHHHHHH---hccCCCCCCceEEEEEeCChh-------hhhcc-ccceE-EEcccCCH
Q 008685 270 FRRL-SRRK-VLIVFDDVSC--FNQIESL---IGSLDWFTPRSTIIITTRDKQ-------VLRNW-GVKKI-YEMEALEY 333 (557)
Q Consensus 270 ~~~l-~~k~-~LlVlDdv~~--~~~~~~l---~~~l~~~~~~~~IiiTsR~~~-------~~~~~-~~~~~-~~l~~L~~ 333 (557)
.+.. ++++ ..+++|++.+ .+.++.+ ...-......-+|+..-..+- +.... ..... |+++|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 2222 4566 8999999943 2333333 222222222233444332220 11111 12233 89999999
Q ss_pred HHHHHHHHhccccCCCCCCC-hHHHHHHHHHHcCCCchhhHhhhhh
Q 008685 334 DHALELFSRHAFKQIHPAVG-YEELSSKVMEYAQGVPLALKVLGCF 378 (557)
Q Consensus 334 ~ea~~L~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~PLal~~~a~~ 378 (557)
++...++..+..+...+.+. ..+....|.....|.|.++..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999998877655433332 3466778999999999999888643
No 130
>PRK08181 transposase; Validated
Probab=97.80 E-value=0.00015 Score=70.09 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=54.7
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCce
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKV 278 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~ 278 (557)
.-+.|+|++|+|||.||..+++........+.|+. ...+...+..... ........+.+. +.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~-----~~~~~~~l~~l~-~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR-----ELQLESAIAKLD-KFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh-----CCcHHHHHHHHh-cCC
Confidence 45899999999999999999998766544455543 1223333322111 112223333333 345
Q ss_pred EEEEcCCC----CHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 279 LIVFDDVS----CFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 279 LlVlDdv~----~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
||||||+. +......+...+...-.+..+||||..+
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 99999993 2222222222222111124688888765
No 131
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0027 Score=62.94 Aligned_cols=160 Identities=10% Similarity=0.137 Sum_probs=99.6
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--------------------CCceEEEEeccccccCC
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--------------------FEGSCFLQNVREESVRP 242 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~~~~ 242 (557)
..++|...+..+ .-...+.++|+.|+||+++|..++..+--. .+...++....
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------ 83 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK------ 83 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc------
Confidence 344555555432 236688999999999999999999875321 11122221000
Q ss_pred CChHHHHHHHHHHHhcCCccccCHHHHH---HHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeC
Q 008685 243 GGLACLQLKLLSKLLQDNNVILNIALSF---RRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 243 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~---~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
.+..+.++.++ +.+ .++.-++|+|+++.. .....++..+..-.+++.+|++|.
T Consensus 84 -----------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 84 -----------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred -----------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 00111222222 222 234558999999654 456677777766677787777776
Q ss_pred Ch-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 313 DK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 313 ~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
+. .+++. .+....+.+.+++.+++.+.+..... . ....++..++|.|+....+.
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHHh
Confidence 65 34333 34567899999999999999876421 1 23567899999998765553
No 132
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0011 Score=65.90 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=99.8
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---ceEEEEeccccccCCCChHHHHHHHHH---HH
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---GSCFLQNVREESVRPGGLACLQLKLLS---KL 256 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~---~~ 256 (557)
..+.|...+..+ .-.....++|+.|+||+++|..++..+--.-+ ..|=. ..+...+...--. .+
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~---------C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQ---------CHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC---------CHHHHHHhcCCCCCEEEE
Confidence 344566665433 23567889999999999999999987532211 00000 0000000000000 00
Q ss_pred hcCCccccCHHHHH---HHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cccce
Q 008685 257 LQDNNVILNIALSF---RRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WGVKK 324 (557)
Q Consensus 257 ~~~~~~~~~~~~l~---~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~~~~ 324 (557)
....+..+.++.++ +.+ .++.-++|+|+++.. .....++..+..-.+++.+|++|.+. .+++. .+...
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 00001111222232 222 245568889999654 45677777777667788888777765 34433 34567
Q ss_pred EEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 325 IYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 325 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
.+.+.+++.++..+.+...... + ...+..++..++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~-----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSA-----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhcc-----C--hHHHHHHHHHcCCCHHHH
Confidence 8999999999999999875411 1 234667788999999633
No 133
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00088 Score=67.14 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=100.1
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------------------CCceEEEEeccccccC
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------------------FEGSCFLQNVREESVR 241 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~ 241 (557)
..++|...+..+ .-.....++|+.|+||+++|..++..+--. .+...++.
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 445566666533 236788899999999999999999885321 11111211
Q ss_pred CCChHHHHHHHHHHHhcCCc-cccCHHH---HHHHH-----ccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEE
Q 008685 242 PGGLACLQLKLLSKLLQDNN-VILNIAL---SFRRL-----SRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIIT 310 (557)
Q Consensus 242 ~~~~~~l~~~ll~~~~~~~~-~~~~~~~---l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiT 310 (557)
.+.. ..+.++. +.+.+ .+++-++|+|+++.. +....++..+..-.+++.+|++
T Consensus 81 ----------------p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (334)
T PRK07993 81 ----------------PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLA 144 (334)
T ss_pred ----------------cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 0000 1122222 22222 245669999999644 4567777777666777877777
Q ss_pred eCChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 311 TRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 311 sR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
|.+.+ +++. .+....+.+.+++.+++.+.+..... ...+.+..++..++|.|...
T Consensus 145 t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 145 CREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT-------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-------CCHHHHHHHHHHcCCCHHHH
Confidence 77653 4433 34456889999999999998876421 11345778899999999644
No 134
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.74 E-value=4.5e-05 Score=69.22 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=27.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..-+.|+|++|+|||.||.++++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999998776555556654
No 135
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.002 Score=64.80 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=89.5
Q ss_pred Cccc-cchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------------------CCceEEEE
Q 008685 176 QLVG-VESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------------------FEGSCFLQ 233 (557)
Q Consensus 176 ~~vG-R~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 233 (557)
.++| -+..++.|...+..+ .-.....++|+.|+|||++|..+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 666777787777543 235678999999999999999999885321 11111111
Q ss_pred eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceE
Q 008685 234 NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRST 306 (557)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ 306 (557)
.. .. .-.... +..+.+.+ .+.+-++|+|+++. .+....++..+....+++.
T Consensus 85 ~~-~~---~i~id~------------------ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 85 PD-GQ---SIKKDQ------------------IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred cc-cc---cCCHHH------------------HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 00 00 000010 11112221 23456899999954 3456677777766667787
Q ss_pred EEEEeCChh-hhhc-cccceEEEcccCCHHHHHHHHHhc
Q 008685 307 IIITTRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRH 343 (557)
Q Consensus 307 IiiTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 343 (557)
+|++|.+.. +.+. ......+++.+++.++..+.+...
T Consensus 143 ~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 143 AILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 877776653 3332 344678999999999998888764
No 136
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.74 E-value=0.00011 Score=73.91 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=59.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcccc--C--------
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVIL--N-------- 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~--~-------- 265 (557)
..+.++|+|++|+|||||++.+++.+... |+..+|+..+++. ......++..++..+........ .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45689999999999999999999987665 8888898866542 34667777776443332211111 1
Q ss_pred HHHHHH-HHccCceEEEEcCCCCH
Q 008685 266 IALSFR-RLSRRKVLIVFDDVSCF 288 (557)
Q Consensus 266 ~~~l~~-~l~~k~~LlVlDdv~~~ 288 (557)
.+..+. ...+++++|++|.+...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 111111 13578999999999543
No 137
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0014 Score=66.18 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=109.9
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCc--eEEEEeccccccCCCChHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG--SCFLQNVREESVRPGGLACLQL 250 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~ 250 (557)
..++||+.|+..+.+++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++. . .+ -.....+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c--~s--l~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-C--TS--LTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-e--cc--ccchHHHHH
Confidence 6799999999999999865 33456788999999999999999999887665444 23332 1 11 123445555
Q ss_pred HHHHHHhcCCcccc-C---HHHHHHHHcc--CceEEEEcCCCCHHH--HHHHhccCCCC-CCceEEEEEeCCh------h
Q 008685 251 KLLSKLLQDNNVIL-N---IALSFRRLSR--RKVLIVFDDVSCFNQ--IESLIGSLDWF-TPRSTIIITTRDK------Q 315 (557)
Q Consensus 251 ~ll~~~~~~~~~~~-~---~~~l~~~l~~--k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~~IiiTsR~~------~ 315 (557)
.+...+........ . ...+.....+ ..+|+|+|.++.... -..+...+.|- -+++++|+.---. .
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 55555533222222 1 3334444433 358999999865431 11111111111 2456655432211 1
Q ss_pred hhhccc-----cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhH
Q 008685 316 VLRNWG-----VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 316 ~~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 373 (557)
.+..+. ....+..+|-+.++-.++|.++.-.... .......++.+++++.|.-=-+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCchhHH
Confidence 122221 2357788999999999999998743221 11222344445555554443333
No 138
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.73 E-value=0.012 Score=59.70 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCH-----------HHHHHHhccCCCCCCceEEEEEeCChhhhhcc------ccceEEEcccCCHHHHHH
Q 008685 276 RKVLIVFDDVSCF-----------NQIESLIGSLDWFTPRSTIIITTRDKQVLRNW------GVKKIYEMEALEYDHALE 338 (557)
Q Consensus 276 k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~------~~~~~~~l~~L~~~ea~~ 338 (557)
++-+||+||+... .+|...+.. .+=.+||++|-+......+ ...+.+.|...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3668999999321 234443332 3456888888776443221 244688999999999999
Q ss_pred HHHhccccCCCC------------------CCChHHHHHHHHHHcCCCchhhHhhhhhhcC
Q 008685 339 LFSRHAFKQIHP------------------AVGYEELSSKVMEYAQGVPLALKVLGCFLFG 381 (557)
Q Consensus 339 L~~~~~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~ 381 (557)
+...+....... .....+.....++.+||=-.=|+.+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999987543110 0123455667788888888888888888765
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.72 E-value=0.00043 Score=67.95 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=98.0
Q ss_pred CCccccchhHHHHHHhhcccCCC-cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWED-VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~-~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
+.|.+|+.++..|..++...+.. +..|.|+|.+|.|||.+.+++.+... -..+|+..+. ......+...++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e-----cft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE-----CFTYAILLEKIL 77 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH-----hccHHHHHHHHH
Confidence 67899999999999999765543 44569999999999999999998762 3456776333 556677777777
Q ss_pred HHHh-cCCcccc-C---------HHHHHH--HHc--cCceEEEEcCCCCHHHHHHH--------hccCCCCCCceEEEEE
Q 008685 254 SKLL-QDNNVIL-N---------IALSFR--RLS--RRKVLIVFDDVSCFNQIESL--------IGSLDWFTPRSTIIIT 310 (557)
Q Consensus 254 ~~~~-~~~~~~~-~---------~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l--------~~~l~~~~~~~~IiiT 310 (557)
.+.. ...+... . ...+.+ ... ++.++|||||++...+.+.. -..++ .+... |++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~-iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIV-IIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceE-EEE
Confidence 7774 2211111 1 122222 122 35899999999655443221 11122 23333 333
Q ss_pred eCCh---hhhhccccc--eEEEcccCCHHHHHHHHHhcc
Q 008685 311 TRDK---QVLRNWGVK--KIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 311 sR~~---~~~~~~~~~--~~~~l~~L~~~ea~~L~~~~~ 344 (557)
+-.. .....++.. -++..+.-+.+|..+++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 3322 112212322 356778889999998887643
No 140
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.67 E-value=0.00033 Score=75.52 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=41.1
Q ss_pred CCccccchhHHHHHHhhccc---CCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVE---WEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|-+..++++..++... ....+++.|+|++|+||||+++.++..+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 77999999999999988652 23356899999999999999999998753
No 141
>PRK09183 transposase/IS protein; Provisional
Probab=97.66 E-value=0.00021 Score=69.05 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=26.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+.|+|++|+|||+||..++.........+.++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34678999999999999999988765443333443
No 142
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.00081 Score=75.27 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.+..++.|.+.+.. +-...+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~ 253 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYY 253 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccc
Confidence 4588999999998877632 112346789999999999999999998764332 1221 110000000
Q ss_pred C-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCCCCC-CceEEE
Q 008685 244 G-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLDWFT-PRSTII 308 (557)
Q Consensus 244 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~-~~~~Ii 308 (557)
+ ..... ...+.......+.+|+||+++.. .....++..+.... .+..++
T Consensus 254 g~~~~~l----------------~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 254 GESEERL----------------REIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred cHHHHHH----------------HHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 0 00001 11122223456789999998432 11233333332222 233344
Q ss_pred E-EeCChhhhh-cc----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 309 I-TTRDKQVLR-NW----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 309 i-TsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
+ ||....... .. .....+.++..+.++-.+++........... ......+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 4 444332111 11 1235678888888888888876542221111 223567888888764
No 143
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.00094 Score=74.77 Aligned_cols=172 Identities=18% Similarity=0.274 Sum_probs=94.4
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.+...+.|.+.+.. +-...+-+.++|++|+|||+||+++++.....| +.+. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH-------
Confidence 4577888887777765531 112345689999999999999999999864332 1111 00
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHH-HHccCceEEEEcCCCCH--------------HHHHHHhccCCCC--CCceE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFR-RLSRRKVLIVFDDVSCF--------------NQIESLIGSLDWF--TPRST 306 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~~~~ 306 (557)
.++....++.. .....+.+ .-...+.+|++|+++.. ..+..++..+... ..+.-
T Consensus 522 -------~l~~~~vGese--~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 -------EILSKWVGESE--KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -------HHhhcccCcHH--HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111100 01112222 22356799999998532 1233344444321 23445
Q ss_pred EEEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 307 IIITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 307 IiiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
||.||..+..... . .....+.++..+.++-.++|..+..+..... ......+++.|.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 5666655543221 1 2346788998899988888876553222111 122566777777754
No 144
>PRK06526 transposase; Provisional
Probab=97.63 E-value=9.5e-05 Score=71.02 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=26.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCF 231 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 231 (557)
..-+.|+|++|+|||+||..+..........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3468999999999999999999887654333333
No 145
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0051 Score=61.57 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=62.1
Q ss_pred cCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cccceEEEcccCCHHHHHHHHHhccccCCCC
Q 008685 275 RRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHP 350 (557)
Q Consensus 275 ~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 350 (557)
++.-++|+|+++. .+....++..+..-.+++.+|++|.+. .+++. ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 3455889999964 456777777777667777776666554 44433 3445789999999999999998752 1
Q ss_pred CCChHHHHHHHHHHcCCCchhhHhh
Q 008685 351 AVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 351 ~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+ . ...++..++|.|+....+
T Consensus 206 ~---~--~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D--ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h--HHHHHHHcCCCHHHHHHH
Confidence 1 1 234577899999754443
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.55 E-value=0.0019 Score=72.21 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhccc------C-CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVE------W-EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~------~-~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|-+..++.+...+... + .....+.++|++|+|||+||+.++..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 67899999999888776531 1 124568899999999999999999877
No 147
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.001 Score=63.05 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..+.+|......+..++.. ...+.+.|++|+|||+||.+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567788888888888753 348999999999999999999885
No 148
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.54 E-value=0.0016 Score=64.55 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc-ccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE-SVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
..++.++|||++|+|||.+|++++......| +-+. ..+. +......+...++++...... ..-+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A~~~-----------a~~~ 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREAADI-----------IKKK 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHHHHH-----------hhcc
Confidence 4578899999999999999999999865432 2221 1111 111112223333332221100 0014
Q ss_pred cCceEEEEcCCCCH------------HHH--HHHhccCC--------------CCCCceEEEEEeCChhhhhc--c--c-
Q 008685 275 RRKVLIVFDDVSCF------------NQI--ESLIGSLD--------------WFTPRSTIIITTRDKQVLRN--W--G- 321 (557)
Q Consensus 275 ~k~~LlVlDdv~~~------------~~~--~~l~~~l~--------------~~~~~~~IiiTsR~~~~~~~--~--~- 321 (557)
+++++|++|+++.. .++ ..|+..++ ...++..||+||...+.+.. . +
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 67999999998421 111 23332221 12345667888866643221 1 1
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL 370 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 370 (557)
....+ ..-+.++-.+++..+.-... .+ .....+|++...|-|+
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~~-l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDDG-VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccCC-CC---HHHHHHHHHcCCCCCc
Confidence 11233 23355555666665443222 11 4566778888877775
No 149
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00036 Score=60.25 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
+.+.|+|++|+||||+++.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999876654334443
No 150
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.00023 Score=70.98 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=29.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.-+.++|++|+|||+||.++++.+..+...++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999999876655566654
No 151
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0016 Score=68.86 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=89.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
..-|.|.|+.|+|||+||+++++.+... ..+++..++........+..++..+- ..+.+.+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN-------------NVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH-------------HHHHHHHhhCC
Confidence 4578999999999999999999987743 33444434333332344555554432 22334566789
Q ss_pred eEEEEcCCCCHH------------H---HHHHh----ccCCCCCCceEEEEEeCChhhhhc-----cccceEEEcccCCH
Q 008685 278 VLIVFDDVSCFN------------Q---IESLI----GSLDWFTPRSTIIITTRDKQVLRN-----WGVKKIYEMEALEY 333 (557)
Q Consensus 278 ~LlVlDdv~~~~------------~---~~~l~----~~l~~~~~~~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~ 333 (557)
-++||||++... . +..++ ......+....+|.|......... .-......|+++..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 999999994211 1 11111 111111222345555554322211 11234678888888
Q ss_pred HHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhh
Q 008685 334 DHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVL 375 (557)
Q Consensus 334 ~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 375 (557)
++-.++++...-... .....+...-+..+|+|. |.-+.++
T Consensus 576 ~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 877777766542221 222234455588888875 4444444
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.47 E-value=0.0024 Score=61.98 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.+.|.|++|+|||+||+.++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999854
No 153
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00038 Score=66.93 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=29.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...-+.++|.+|+|||.||.++.+++....-.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456899999999999999999999884434445543
No 154
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.44 E-value=0.001 Score=65.85 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=55.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.+-+.|+|..|+|||.||.++++.+...-..+.|+. ...+...+-...... ......+.+. +-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-----~~~~~l~~l~-~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-----SVKEKIDAVK-EA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-----cHHHHHHHhc-CC
Confidence 457899999999999999999999876544455554 122233332222111 1222333333 34
Q ss_pred eEEEEcCCC--CHHHHH--HHhccC-C-CCCCceEEEEEeCC
Q 008685 278 VLIVFDDVS--CFNQIE--SLIGSL-D-WFTPRSTIIITTRD 313 (557)
Q Consensus 278 ~LlVlDdv~--~~~~~~--~l~~~l-~-~~~~~~~IiiTsR~ 313 (557)
=||||||+. ....|. .++..+ . ....+..+|+||--
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 589999993 222332 233322 1 11245567888764
No 155
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0025 Score=66.31 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..+=|.++.+.+|.+++.. +-..++-|.+||++|+|||.||++++.++.-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 5677999999999887642 22346779999999999999999999986543
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.42 E-value=0.00022 Score=69.14 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=29.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
...+.++|.+|+|||+||.++++.+..+ ...++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999998765 44455554
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0039 Score=65.20 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC----C--ceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF----E--GSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----~--~~~~~~~~~~~~~~~~~~~~l 248 (557)
..++|-+.....|...+..+. -...-...|+-|+||||+|+-++.-+--.- . ..|-.| .+.. ......+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~--~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEIN--EGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhh--cCCcccc
Confidence 668999999999999987542 245667999999999999999998742211 0 011110 0000 0000000
Q ss_pred HHHHHHHHhcCCcccc-CHHHHHHHHc-----cCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCChh-hh-h
Q 008685 249 QLKLLSKLLQDNNVIL-NIALSFRRLS-----RRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDKQ-VL-R 318 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~-~~~~l~~~l~-----~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~-~ 318 (557)
. .+........ +...+.+... ++.=+.|+|.|. +...+..++..+....+....|+.|++.. +. .
T Consensus 91 i-----EiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 91 I-----EIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred h-----hhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0 0000001111 1333333332 344589999995 45678899988876677777777777663 22 2
Q ss_pred ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 319 NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 319 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.....+.+.+..++.++-...+...+....... .++....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 244567899999999999888888775443332 2566777777777743
No 158
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.41 E-value=0.00059 Score=62.76 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=58.7
Q ss_pred cchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh--hccCCceEEEEeccccccC-CCChHHH-------H
Q 008685 180 VESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI--SSDFEGSCFLQNVREESVR-PGGLACL-------Q 249 (557)
Q Consensus 180 R~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~-~~~~~~l-------~ 249 (557)
+..+.....+.|. ...++.+.|++|.|||.||.+.+-+. ..+|+..++....-+.... .+-...+ .
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444555555554 34589999999999999999988663 3457766665433221110 0000010 1
Q ss_pred HHHHHHHhcCCccccCHHHHH----------HHHcc---CceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEEEeCC
Q 008685 250 LKLLSKLLQDNNVILNIALSF----------RRLSR---RKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIIITTRD 313 (557)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~l~----------~~l~~---k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~IiiTsR~ 313 (557)
..+...+..-. .....+.+. ..+++ ...++|+|++ .+.+++..++..+ +.+|++|++--.
T Consensus 81 ~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 11111111100 001122221 12233 2569999999 4566888887653 789999998654
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.0066 Score=68.99 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=40.6
Q ss_pred CCccccchhHHHHHHhhccc------C-CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE------W-EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~------~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+..++.+...+... + .....+.++|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 56899999999998877541 1 124578899999999999999999886543
No 160
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.40 E-value=0.0039 Score=55.67 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=75.3
Q ss_pred ccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--------------------CCceEEEEecccc
Q 008685 179 GVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--------------------FEGSCFLQNVREE 238 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 238 (557)
|-+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-.. ++...++.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4456677777777543 235678999999999999999999885321 233333321110
Q ss_pred ccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-
Q 008685 239 SVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ- 315 (557)
Q Consensus 239 ~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~- 315 (557)
.. .-....+. .+...+... ...++.=++|+||++. .+....|+..+.....++.+|++|.+..
T Consensus 79 ~~-~i~i~~ir-~i~~~~~~~------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 79 KK-SIKIDQIR-EIIEFLSLS------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SS-SBSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred cc-hhhHHHHH-HHHHHHHHH------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 00 01111111 222221111 0123466899999964 4566777777766678999999888774
Q ss_pred hhhc-cccceEEEcccCC
Q 008685 316 VLRN-WGVKKIYEMEALE 332 (557)
Q Consensus 316 ~~~~-~~~~~~~~l~~L~ 332 (557)
+++. ......+.+.+++
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 2222 2345667776654
No 161
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.40 E-value=0.0048 Score=69.41 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=40.1
Q ss_pred CCccccchhHHHHHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 175 NQLVGVESRVEEIESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
...+|.+...+.+.+++.. +......+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578988888888876532 222345799999999999999999999875443
No 162
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0066 Score=60.61 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=52.1
Q ss_pred CceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCC
Q 008685 276 RKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPA 351 (557)
Q Consensus 276 k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 351 (557)
++-++|+|+++ +......++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 34455668884 34444555544443345666777777754 3322 2345688999999999999887642 1 1
Q ss_pred CChHHHHHHHHHHcCCCchhh
Q 008685 352 VGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 352 ~~~~~~~~~i~~~~~G~PLal 372 (557)
. .. ..+..++|.|+..
T Consensus 188 ~--~~---~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 E--PE---ERLAFHSGAPLFD 203 (325)
T ss_pred c--HH---HHHHHhCCChhhh
Confidence 1 11 1235688999643
No 163
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00071 Score=64.90 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=45.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh----ccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccC--HHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS----SDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN--IALSFR 271 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~--~~~l~~ 271 (557)
.|+|.++||||.|||+|++++++.+. ..|.....+. .+ .. .++++...+.+.-.. ...+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in-----sh----sLFSKWFsESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN-----SH----SLFSKWFSESGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee-----hh----HHHHHHHhhhhhHHHHHHHHHHH
Confidence 58999999999999999999999853 3455555443 11 11 223333333222111 344455
Q ss_pred HHccCc--eEEEEcCCCC
Q 008685 272 RLSRRK--VLIVFDDVSC 287 (557)
Q Consensus 272 ~l~~k~--~LlVlDdv~~ 287 (557)
.+.++. +++.+|.|+.
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 555554 4567899854
No 164
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0054 Score=56.68 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=42.5
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCc
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG 228 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 228 (557)
..++|-+...+.|.+.... ..-...-|.+||.-|+|||+|++++.+.+..++..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 5689999999888765432 22334568999999999999999999998877665
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.30 E-value=0.00047 Score=70.54 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--CCceEEEE
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--FEGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 233 (557)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+... +..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4567788888898888863 3467889999999999999999987542 44444544
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.29 E-value=0.008 Score=68.13 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHhhccc-------CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+..++.+...+... +.....+.++|++|+|||+||+.+++.+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 56899999999888877531 1123578899999999999999999876443
No 167
>PRK04132 replication factor C small subunit; Provisional
Probab=97.29 E-value=0.01 Score=66.14 Aligned_cols=154 Identities=13% Similarity=0.147 Sum_probs=92.8
Q ss_pred Eec--cCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceE
Q 008685 203 IWG--IGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVL 279 (557)
Q Consensus 203 I~G--~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~L 279 (557)
+.| |.++||||+|..+++++-. .+...+.-.+.. . ..+...+. .++......... -..+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNAS---d-~rgid~IR-~iIk~~a~~~~~----------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNAS---D-ERGINVIR-EKVKEFARTKPI----------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCC---C-cccHHHHH-HHHHHHHhcCCc----------CCCCCEE
Confidence 347 7899999999999998633 232222222111 1 12333322 332222211100 0124579
Q ss_pred EEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChH
Q 008685 280 IVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYE 355 (557)
Q Consensus 280 lVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 355 (557)
+|+|+++.. .....|+..+......+++|+++.+.. +... ......+.+.+++.++..+.+...+...... ..+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 999999754 456667666665567778877776653 2222 3346789999999999988887765332221 226
Q ss_pred HHHHHHHHHcCCCchhhH
Q 008685 356 ELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 356 ~~~~~i~~~~~G~PLal~ 373 (557)
+....|++.++|.+-..-
T Consensus 712 e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 778899999999985443
No 168
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0016 Score=69.16 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=88.4
Q ss_pred CCccccchhHHHHHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccccc-C---CCChH
Q 008685 175 NQLVGVESRVEEIESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESV-R---PGGLA 246 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~---~~~~~ 246 (557)
..-+|.++..+++.+.|.- ..-..++++++||+|+|||+|++.+++-+.+.|-... +-.++..+. + ..-..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHHhccccccccc
Confidence 5678999999999998853 2234579999999999999999999998877664222 111111111 0 00000
Q ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH------HHHHHhccCCCCC-------------CceEE
Q 008685 247 CLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN------QIESLIGSLDWFT-------------PRSTI 307 (557)
Q Consensus 247 ~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~l~~~~-------------~~~~I 307 (557)
.+-..+++. ....+.+.-+++||.++... ...+++..|+--. -=|.|
T Consensus 402 amPGrIiQ~--------------mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 402 AMPGKIIQG--------------MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cCChHHHHH--------------HHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 001111111 12234456789999995321 1223333221100 11333
Q ss_pred -EEEeCCh-h-h-hhccccceEEEcccCCHHHHHHHHHhcc
Q 008685 308 -IITTRDK-Q-V-LRNWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 308 -iiTsR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.|||-|. . + .+.+..-.++++.+-+.+|-.+.-.++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3444433 2 1 2234455799999999999988888776
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0079 Score=61.64 Aligned_cols=129 Identities=22% Similarity=0.227 Sum_probs=75.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHH-HHHHHHHhcCCccccCHHHHHHHHc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQ-LKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~-~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
.+...+.+.|++|+|||+||.+++.. ..|+.+-.++. .. --++.+-. ...+.. ...+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp---e~--miG~sEsaKc~~i~k------------~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP---ED--MIGLSESAKCAHIKK------------IFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh---HH--ccCccHHHHHHHHHH------------HHHHhhc
Confidence 34667889999999999999999974 67887665531 00 01111111 111111 1122334
Q ss_pred cCceEEEEcCCCCHHH------------HHHHh---ccCCCCCCceEEEEEeCChhhhhcccc----ceEEEcccCCH-H
Q 008685 275 RRKVLIVFDDVSCFNQ------------IESLI---GSLDWFTPRSTIIITTRDKQVLRNWGV----KKIYEMEALEY-D 334 (557)
Q Consensus 275 ~k~~LlVlDdv~~~~~------------~~~l~---~~l~~~~~~~~IiiTsR~~~~~~~~~~----~~~~~l~~L~~-~ 334 (557)
..--.||+||++..-+ ++.++ ...+..+...-|+-||....++..++. ...+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 4556899999954322 23332 222322233345567777777777653 35789999987 6
Q ss_pred HHHHHHHhc
Q 008685 335 HALELFSRH 343 (557)
Q Consensus 335 ea~~L~~~~ 343 (557)
+..+.++..
T Consensus 677 ~~~~vl~~~ 685 (744)
T KOG0741|consen 677 QLLEVLEEL 685 (744)
T ss_pred HHHHHHHHc
Confidence 777777664
No 170
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.27 E-value=0.00041 Score=65.29 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
-.++|.|.+|+|||+|+..+.......|..++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35789999999999999999999999997766654
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.27 E-value=0.0072 Score=67.52 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=84.9
Q ss_pred CCccccchhHHHHHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQL 250 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 250 (557)
...+|.++..+++.++|.. .......+.++|++|+||||+++.++..+...|-... .... .+...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~----~~~~----~d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA----LGGV----RDEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE----cCCC----CCHHHhcc
Confidence 5689999999999887753 1224568999999999999999999987654432211 1111 11111110
Q ss_pred HHHHHHhcCCccccC-HHHHHHHHccCceEEEEcCCCCHHH------HHHHhccCCC---------------CCCceEEE
Q 008685 251 KLLSKLLQDNNVILN-IALSFRRLSRRKVLIVFDDVSCFNQ------IESLIGSLDW---------------FTPRSTII 308 (557)
Q Consensus 251 ~ll~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~~~~Ii 308 (557)
.. ....+. .... ...+. ......-+++||.++.... ...++..+.. .-.+..+|
T Consensus 394 ~~-~~~~g~--~~G~~~~~l~-~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 394 HR-RTYIGS--MPGKLIQKMA-KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ch-hccCCC--CCcHHHHHHH-hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 00 000000 0001 11111 1122344788999953221 2344433321 01333445
Q ss_pred EEeCChhhhh-ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 309 ITTRDKQVLR-NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 309 iTsR~~~~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.|+....+.. ..+....+++.+++.+|-.++...+.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5554332211 12344688999999999988887766
No 172
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0067 Score=65.72 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=100.7
Q ss_pred CCccccchhHHHHHH---hhcc-------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIES---LLGV-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~---~L~~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
.++.|-++..++|.+ .|.. +..-++=+.|+|++|+|||-||++++-... +-|+.....
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS------- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS------- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH-------
Confidence 568888866555554 5543 122367789999999999999999997642 223321110
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHH-HHccCceEEEEcCCCCH-----------------HHHHHHhccCCCCCCceE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFR-RLSRRKVLIVFDDVSCF-----------------NQIESLIGSLDWFTPRST 306 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~~~~~~~ 306 (557)
+++.-..... ...+..+.. .-.+.++++.+|+++.. ..+..++..++.+..+..
T Consensus 379 ------EFvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ------EFVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ------HHHHHhcccc--hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111111 011222222 22456889999988421 235566666665554443
Q ss_pred E--EEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 307 I--IITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 307 I--iiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
| +-+|...+++.. -.....+.++.-+...-.++|.-++...... ....+..+ |+..+-|++=|-
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 3 334444444322 1234577888888888889998887554433 23345555 999998888553
No 173
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.25 E-value=0.001 Score=66.21 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=44.2
Q ss_pred cCCCCCCCccccchhHHHHHHhhccc----CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 169 FPCVNNNQLVGVESRVEEIESLLGVE----WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 169 ~p~~~~~~~vGR~~~l~~l~~~L~~~----~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.|... ..++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 46 y~~F~-~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 46 YRFFD-HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccccc-hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34444 57999999999999888652 234688999999999999999999988644
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.25 E-value=0.0029 Score=57.98 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=39.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...||-++-++.|.-.-.. .+.+-+.|.||+|+||||-+..+++.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 6789999999988877654 35667889999999999999999988543
No 175
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.21 E-value=0.0023 Score=56.96 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++.|+|++|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766555566654
No 176
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.20 E-value=0.00041 Score=60.26 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=33.6
Q ss_pred cccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 178 VGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 178 vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
||+...++++.+.+..-......|.|+|.+|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777788888777765334456789999999999999998887643
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0025 Score=69.45 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEEIESLLGV-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (557)
..++|-+.-+..+.+.+.. .+.+.......||.|+|||.||++++..+-..=...+-+. +++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy--------- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY--------- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHH---------
Confidence 6789999999988887643 2334678888999999999999999998743323333322 2111
Q ss_pred HHHHHHHHHhcCCcccc---CHHHHHHHHccCce-EEEEcCCC--CHHHHHHHhccCC
Q 008685 248 LQLKLLSKLLQDNNVIL---NIALSFRRLSRRKV-LIVFDDVS--CFNQIESLIGSLD 299 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~~---~~~~l~~~l~~k~~-LlVlDdv~--~~~~~~~l~~~l~ 299 (557)
.-+.-.+.+.+..+.-. ..-.+.+..+.+|| +|.||+++ +++...-|+..+.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 11223334433322222 25567778888887 88899994 4555666655554
No 178
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.19 E-value=0.0011 Score=63.75 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=35.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE 238 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 238 (557)
..+.++|.|.+|.|||+|+..+++.+..+|...+++..+++.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 456789999999999999999999998888877877666543
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.0014 Score=60.68 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=61.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE-eccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ-NVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.++.|.|+.|+||||++..+...+.......++.. ...+... . .. ..+..+.........-.+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~-~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-E-SK----RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-c-Cc----cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999998887765444444432 1111000 0 00 0010000000000111456667777778
Q ss_pred eEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhh
Q 008685 278 VLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 278 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~ 316 (557)
=++++|++.+.+.+...+... ..|..++.|+...+.
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 899999998887766554432 235557777765543
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0052 Score=67.06 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CC-----ceEEEEeccccc---cCCCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FE-----GSCFLQNVREES---VRPGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~---~~~~~~ 245 (557)
++++||++|+.++.+.|.....+.+ .++|.+|+|||+++.-++.++... -+ ..++..++...- .....+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 6799999999999999976433332 478999999999999999986543 21 112211111000 001122
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC-----------HHHHHHHhccCCCCCCceEEE-EEeCC
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC-----------FNQIESLIGSLDWFTPRSTII-ITTRD 313 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----------~~~~~~l~~~l~~~~~~~~Ii-iTsR~ 313 (557)
+.-++.++..+ -+.++++|++|.+.. .+...-+.+.|. ....+.| .||-+
T Consensus 248 EeRlk~vl~ev----------------~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~ 309 (786)
T COG0542 248 EERLKAVLKEV----------------EKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLD 309 (786)
T ss_pred HHHHHHHHHHH----------------hcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHH
Confidence 22222222221 123489999999821 222233334443 1223444 45543
Q ss_pred hhh--h----hccccceEEEcccCCHHHHHHHHHhcc
Q 008685 314 KQV--L----RNWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 314 ~~~--~----~~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
+.- . ......+.+.|...+.+++..+++...
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 311 0 001234678888889998888887543
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.17 E-value=0.0054 Score=61.52 Aligned_cols=47 Identities=21% Similarity=0.111 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
++|+...++++.+.+..-......|.|+|.+|+||+++|+.+.+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 47888888887777655333445689999999999999999887543
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.13 E-value=0.0035 Score=70.95 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEEIESLLGV-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (557)
..++|-+..++.+...+.. .+.....+.++|++|+|||+||+.+++.+...-...+-+. ..+... ......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~-~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYME-KHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccc-cccHHH
Confidence 6789999999998877642 1122356789999999999999999988643322222222 222111 111111
Q ss_pred HHHHHHHHHhcCCccc--c-CHHHHHHHHccCc-eEEEEcCCC--CHHHHHHHhccCCCC-----------CCceEEEEE
Q 008685 248 LQLKLLSKLLQDNNVI--L-NIALSFRRLSRRK-VLIVFDDVS--CFNQIESLIGSLDWF-----------TPRSTIIIT 310 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~--~-~~~~l~~~l~~k~-~LlVlDdv~--~~~~~~~l~~~l~~~-----------~~~~~IiiT 310 (557)
+.+....- . ....+.+.++.++ .+++||+++ ++.....|+..+... ...+-+|+|
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11111000 0 1334556666665 589999995 344455555444321 134556677
Q ss_pred eCCh
Q 008685 311 TRDK 314 (557)
Q Consensus 311 sR~~ 314 (557)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 6643
No 183
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.13 E-value=0.0053 Score=54.11 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=62.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHh-----c-----CCccccC---
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLL-----Q-----DNNVILN--- 265 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-----~-----~~~~~~~--- 265 (557)
..|-|++..|.||||+|...+-+...+-..+.++....... ..+-...+..+ ..+. . ..+...+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999999988776656666655444321 12222222222 0000 0 0000000
Q ss_pred ----HHHHHHHHcc-CceEEEEcCCCCH-----HHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 266 ----IALSFRRLSR-RKVLIVFDDVSCF-----NQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 266 ----~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
.+..++.+.. .-=|||||++... -..+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233334433 3459999999322 122333333333456789999999963
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.11 E-value=0.0024 Score=63.91 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC-ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccc
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVI 263 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 263 (557)
.++.+.+..- ...+.+.|+|++|+|||||++.+++.+..+.+ ..+++..+.+. ......+...+...+.......
T Consensus 121 ~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred Hhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCC
Confidence 3466666532 23456799999999999999999998876553 33344334332 4455666666655444322111
Q ss_pred c--C-------HHHHHHHH--ccCceEEEEcCCCC
Q 008685 264 L--N-------IALSFRRL--SRRKVLIVFDDVSC 287 (557)
Q Consensus 264 ~--~-------~~~l~~~l--~~k~~LlVlDdv~~ 287 (557)
. . .....+++ .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 1 11111222 47899999999943
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.10 E-value=0.00042 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|+|.|++|+||||+|+++++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999975
No 186
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.09 E-value=0.014 Score=57.87 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=34.5
Q ss_pred EEEcccCCHHHHHHHHHhccccCCCCC-CChHHHHHHHHHHcCCCchhh
Q 008685 325 IYEMEALEYDHALELFSRHAFKQIHPA-VGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 325 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 372 (557)
++++++++.+|+..++....-..-... ...+...+++.-..+|||--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764433222 233455667777779999654
No 187
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.08 E-value=0.01 Score=59.54 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..++|+...++++.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56999999999998887653334457899999999999999988864
No 188
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.07 E-value=0.0095 Score=55.65 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=94.7
Q ss_pred CCccccchhHHH---HHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEE---IESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~---l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (557)
+..||.+..... |.+.|.. +...++-|..+|++|.|||.+|+++++.....|- .+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk-----------at- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK-----------AT- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec-----------hH-
Confidence 568888765543 4455543 2345788999999999999999999987543211 110 01
Q ss_pred HHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH--------------HHHHHHhccCCCC--CCceEEEEE
Q 008685 248 LQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF--------------NQIESLIGSLDWF--TPRSTIIIT 310 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~~~~IiiT 310 (557)
+++....++... .+..+.++. +..++++.+|.++.. +.+.+++..++.. +.|...|..
T Consensus 186 ---~liGehVGdgar--~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 186 ---ELIGEHVGDGAR--RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ---HHHHHHhhhHHH--HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 122111111100 122233332 346899999998532 2345566555432 345455555
Q ss_pred eCChhhhhcc---ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 311 TRDKQVLRNW---GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 311 sR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
|.+...+... .....++..--+.+|-..++...+-.-..+- ....+.++++++|+.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 5555443321 1224566666677888888877763222221 222566777777653
No 189
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0065 Score=61.06 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=82.5
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC---------------------CceEEEEec
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF---------------------EGSCFLQNV 235 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~ 235 (557)
++|-+....++..+..........+.++|++|+||||+|..+++.+.... +.+..+...
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56677777777777764333455699999999999999999999875332 122222111
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH--HHHHHhccCCCCCCceEEEEEeCC
Q 008685 236 REESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN--QIESLIGSLDWFTPRSTIIITTRD 313 (557)
Q Consensus 236 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~IiiTsR~ 313 (557)
.... ........+.+........ ..++.-++++|+++... ....++..+......+.+|++|..
T Consensus 83 ~~~~--~~i~~~~vr~~~~~~~~~~------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 83 DLRK--IDIIVEQVRELAEFLSESP------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccCC--CcchHHHHHHHHHHhccCC------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 0000 0001222222222211110 02456799999997553 455666666556778888888874
Q ss_pred h-hhhhc-cccceEEEcccCCHHHH
Q 008685 314 K-QVLRN-WGVKKIYEMEALEYDHA 336 (557)
Q Consensus 314 ~-~~~~~-~~~~~~~~l~~L~~~ea 336 (557)
. .+... ......+++.+.+..+.
T Consensus 149 ~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 149 PSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred hhhccchhhhcceeeecCCchHHHH
Confidence 4 33322 23345677776444433
No 190
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.07 E-value=0.018 Score=57.87 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=36.3
Q ss_pred chhHHHHHHhhcccC-CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 181 ESRVEEIESLLGVEW-EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 181 ~~~l~~l~~~L~~~~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+.-.+.|.+.+...+ ....+|+|.|.-|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445566777776543 568899999999999999999999988766
No 191
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.07 E-value=0.015 Score=57.32 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
|... +.++=..+....+...+.. .+.|.|.|++|+||||+|+.++..+...+
T Consensus 41 p~~d-~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDID-PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCC-CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3344 4455555556666666642 24699999999999999999999876443
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.0025 Score=71.99 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGV-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|-+.-++.+.+.+.. ......++.++|++|+|||.||+.++..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5789999999988877632 12234578999999999999999999887443
No 193
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.05 E-value=0.0026 Score=60.26 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|.++|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455566544455789999999999999999999988766666778876
No 194
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0044 Score=65.69 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=44.7
Q ss_pred CCccccchhHHHHHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 175 NQLVGVESRVEEIESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
..-+|.++..+++.+.+.- ++.+.++++.+|++|+|||.+|+.++.-+.++|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4568999999999888743 4556789999999999999999999998877654
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0044 Score=65.21 Aligned_cols=151 Identities=18% Similarity=0.285 Sum_probs=82.0
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHH-HHc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFR-RLS 274 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~-~l~ 274 (557)
..++-|.++|+||+|||++|+++++.....|-.+- ..++++...++... .+..+.+ .-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk------------------gpEL~sk~vGeSEr--~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK------------------GPELFSKYVGESER--AIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc------------------CHHHHHHhcCchHH--HHHHHHHHHhh
Confidence 56788999999999999999999998655543220 01122222222110 0111111 112
Q ss_pred cCceEEEEcCCCCHH-------------HHHHHhccCCCCCCceEE-EEEeCC-hhhhh-c-c---ccceEEEcccCCHH
Q 008685 275 RRKVLIVFDDVSCFN-------------QIESLIGSLDWFTPRSTI-IITTRD-KQVLR-N-W---GVKKIYEMEALEYD 334 (557)
Q Consensus 275 ~k~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~~~I-iiTsR~-~~~~~-~-~---~~~~~~~l~~L~~~ 334 (557)
-.+.++.||.++... .+..++..++.......| |+...| ++... . + ...+.+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 357899999985322 244555555543333333 332222 22211 1 1 13457777777778
Q ss_pred HHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 335 HALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 335 ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.-.++|..++-+-.... .-...+|++++.|.-
T Consensus 606 aR~~Ilk~~~kkmp~~~---~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSE---DVDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHhcCCCCc---cccHHHHHHHhccCC
Confidence 88888888773322221 123566777777664
No 196
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.02 E-value=0.011 Score=60.95 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=34.2
Q ss_pred cchhHHHHHHhhc-----ccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 180 VESRVEEIESLLG-----VEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 180 R~~~l~~l~~~L~-----~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
-.+-+.++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3456677888876 344557899999999999999999998864
No 197
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.13 Score=49.31 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=93.0
Q ss_pred CCccccchhHHHHHHhhc----------ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLG----------VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..+.|-+...+.|.+... .....-+-|.++|++|.|||-||++|+..... .|++ .+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vSS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VSS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----eeh----
Confidence 567899988888887542 12234678999999999999999999987532 2222 111
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH---------HHHHH----HhccCC---CCCCceEE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF---------NQIES----LIGSLD---WFTPRSTI 307 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~----l~~~l~---~~~~~~~I 307 (557)
..+.+...++... -+..+.+.. ++++-+|.+|.++.. +.... ++-+.. ....|.-|
T Consensus 200 -----SDLvSKWmGESEk--LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 200 -----SDLVSKWMGESEK--LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred -----HHHHHHHhccHHH--HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 1222232222110 022222222 478999999999532 22222 222221 12234445
Q ss_pred EEEeCChhhhhcc---ccceEEEcccCCHHHHH-HHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 308 IITTRDKQVLRNW---GVKKIYEMEALEYDHAL-ELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 308 iiTsR~~~~~~~~---~~~~~~~l~~L~~~ea~-~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
+-.|..+-++... .....+-+ ||++..|. .+|.-+.+. .+....++..+++.+++.|.-
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~--tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGD--TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCC--CccccchhhHHHHHhhcCCCC
Confidence 5556555443321 11222323 34445444 566666533 233344666788888888764
No 198
>PRK08118 topology modulation protein; Reviewed
Probab=97.01 E-value=0.002 Score=57.79 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=26.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhc---cCCceEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISS---DFEGSCF 231 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~ 231 (557)
+.|.|+|++|+||||||+.+++.+.- +++..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35899999999999999999998643 3555555
No 199
>PRK06696 uridine kinase; Validated
Probab=97.01 E-value=0.0012 Score=62.51 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=37.3
Q ss_pred ccchhHHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 179 GVESRVEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 179 GR~~~l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.|.+.+++|.+.+.. ...+..+|+|.|.+|+||||||+.++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356677777776653 34567899999999999999999999987654
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.01 E-value=0.0016 Score=59.97 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=58.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc--ccCHHHHHHHH---
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV--ILNIALSFRRL--- 273 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~~~~~~l~~~l--- 273 (557)
.++.|+|+.|.||||++..++.+...+...++++. .. ... ..+... +...+...... ......+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~-~~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDD-RYGEGK----VVSRIGLSREAIPVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-ccc-cccCCc----EecCCCCcccceEeCChHHHHHHHHhh
Confidence 47889999999999999999998766544444432 10 000 111111 11111100000 01122222222
Q ss_pred ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 274 SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 274 ~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23456999999943 344555554433 56888999999854
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.012 Score=55.08 Aligned_cols=121 Identities=21% Similarity=0.440 Sum_probs=70.8
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+=|-.++++.|.+.... +-+.++-|.++|++|.|||-+|++++++- ..||+..++.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs------ 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS------ 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH------
Confidence 3445667777777664321 23456778999999999999999999974 4466653321
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHcc-CceEEEEcCCCC------------HH----HHHHHhccCCCCCCc--
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSR-RKVLIVFDDVSC------------FN----QIESLIGSLDWFTPR-- 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~------------~~----~~~~l~~~l~~~~~~-- 304 (557)
++.+...++... -...+.+..+. |-+++.+|.++. +. ..-.+..++..+.+.
T Consensus 246 -------elvqkyvgegar--mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgn 316 (435)
T KOG0729|consen 246 -------ELVQKYVGEGAR--MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 316 (435)
T ss_pred -------HHHHHHhhhhHH--HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCC
Confidence 223333222110 03334444444 458888998831 11 233556667666654
Q ss_pred eEEEEEeCChh
Q 008685 305 STIIITTRDKQ 315 (557)
Q Consensus 305 ~~IiiTsR~~~ 315 (557)
.+|++.|..+.
T Consensus 317 ikvlmatnrpd 327 (435)
T KOG0729|consen 317 IKVLMATNRPD 327 (435)
T ss_pred eEEEeecCCCC
Confidence 46777665554
No 202
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.97 E-value=0.0086 Score=64.62 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=40.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|....++++.+.+..-......|.|+|++|+|||++|+.+.+...
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 6799999999999887765333445688999999999999999998643
No 203
>PHA00729 NTP-binding motif containing protein
Probab=96.96 E-value=0.0031 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999864
No 204
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.94 E-value=0.021 Score=60.67 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=99.8
Q ss_pred CCccccchhHHHHHHhhcc--cC-CCcEEEEEeccCCCchhHHHHHHHHHhh-----ccCCceEE--EEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV--EW-EDVYTLGIWGIGGIGKTTIAKAIFEKIS-----SDFEGSCF--LQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~--~~~~~~~~~~~~~ 244 (557)
..+-+|+.|..+|...+.. .. .....+-|.|.+|.|||..+..|.+.+. .+-+...+ +.... -..
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~-----l~~ 470 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR-----LAS 470 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee-----ecC
Confidence 6688999999999988754 22 3355899999999999999999998754 12222222 22111 344
Q ss_pred hHHHHHHHHHHHhcCCcccc-CHHHHHHHHc-----cCceEEEEcCCCCHHH--HHHHhccCCCC-CCceEEEEEeCCh-
Q 008685 245 LACLQLKLLSKLLQDNNVIL-NIALSFRRLS-----RRKVLIVFDDVSCFNQ--IESLIGSLDWF-TPRSTIIITTRDK- 314 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~-~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~~IiiTsR~~- 314 (557)
...+...+...+........ ..+.+..+.. .+++++++|+++..-. -+-+...+.|- .++++++|.+=..
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 66677777777665543332 3555555553 4568999999854321 11222223332 3677765543221
Q ss_pred -hhh---------hccccceEEEcccCCHHHHHHHHHhccc
Q 008685 315 -QVL---------RNWGVKKIYEMEALEYDHALELFSRHAF 345 (557)
Q Consensus 315 -~~~---------~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 345 (557)
+.. ..+ ....+...|-+.++-.++...++.
T Consensus 551 mdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred ccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhc
Confidence 111 111 134677788888888888777663
No 205
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.94 E-value=0.0051 Score=62.53 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc--
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV-- 262 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-- 262 (557)
..|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+..- .....+.. -...+....+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-------Es~~qi~~-Ra~rlg~~~~~l~ 140 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-------ESPEQIKL-RADRLGISTENLY 140 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-------cCHHHHHH-HHHHcCCCcccEE
Confidence 345555644434567999999999999999999998876655556666421 11222211 11222211110
Q ss_pred ---ccCHHHHHHHHc-cCceEEEEcCC
Q 008685 263 ---ILNIALSFRRLS-RRKVLIVFDDV 285 (557)
Q Consensus 263 ---~~~~~~l~~~l~-~k~~LlVlDdv 285 (557)
..+.+.+.+.+. .++-++|+|.+
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcch
Confidence 112455555554 46779999998
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.013 Score=61.08 Aligned_cols=128 Identities=19% Similarity=0.302 Sum_probs=74.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccC
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRL-SRR 276 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k 276 (557)
+.-|.+||++|+|||-||+++++.....|- . ..+. +++....++.... +..+.++. ...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s--------VKGP-----ELlNkYVGESErA--VR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S--------VKGP-----ELLNKYVGESERA--VRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e--------ecCH-----HHHHHHhhhHHHH--HHHHHHHhhcCC
Confidence 556899999999999999999998655442 2 1111 2333333322111 22233333 357
Q ss_pred ceEEEEcCCCCH-------------HHHHHHhccCCCC--CCceEEEEEeCChhhhhc-----cccceEEEcccCCHHHH
Q 008685 277 KVLIVFDDVSCF-------------NQIESLIGSLDWF--TPRSTIIITTRDKQVLRN-----WGVKKIYEMEALEYDHA 336 (557)
Q Consensus 277 ~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea 336 (557)
+++|+||.++.. ..+..|+..++.. ..|.-||-.|-.+++... -.....+-|+.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999531 1345566555533 234455555544443221 11234666777778888
Q ss_pred HHHHHhccc
Q 008685 337 LELFSRHAF 345 (557)
Q Consensus 337 ~~L~~~~~~ 345 (557)
.+++....-
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 888887764
No 207
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.91 E-value=0.012 Score=63.11 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56999999999998876533 33567899999999999999998754
No 208
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.91 E-value=0.0018 Score=58.84 Aligned_cols=37 Identities=38% Similarity=0.690 Sum_probs=31.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999887777766663
No 209
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.03 Score=58.05 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.+.+|.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999887655
No 210
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.86 E-value=0.017 Score=51.86 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=23.3
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.|.|.+|+|||++|.+++.. .....+++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 679999999999999999875 223455553
No 211
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.011 Score=59.69 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=28.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
+.++|+|+|++|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 357999999999999999999998876543334444
No 212
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.85 E-value=0.004 Score=62.94 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhc-CCcc-ccC-HHHHHHHHc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQ-DNNV-ILN-IALSFRRLS 274 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~-~~~-~~~l~~~l~ 274 (557)
...+.|.|+.|.||||++..+...+.......++.. ....+.........+.. +... ..+ ...++..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--------Edp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--------EDPIEYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--------cCChhhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999999887765544444432 11111000000000000 0011 112 556777888
Q ss_pred cCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 275 RRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 275 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
..+=.|++|.+.+.+.....+... ..|..++.|....+
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 899999999998888766544331 23444555555443
No 213
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0013 Score=56.94 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=26.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc-CCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD-FEG 228 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~ 228 (557)
..-|+|+|++|+||||+++.+++.++.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 3468999999999999999999998766 543
No 214
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.84 E-value=0.0036 Score=60.66 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=60.0
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV 262 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 262 (557)
.++.|..++. .....+.|.|+.|.||||++..+...+...-..++.+.+..+... .+. .++.-....
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~ 134 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKA 134 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcC
Confidence 3444555553 234589999999999999999998876442223333332222111 000 000000111
Q ss_pred ccC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhcc
Q 008685 263 ILN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIGS 297 (557)
Q Consensus 263 ~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~ 297 (557)
..+ .+.++..++..+=.++++++.+.+....++..
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 112 56677788888999999999998876655433
No 215
>PRK07667 uridine kinase; Provisional
Probab=96.83 E-value=0.0026 Score=58.66 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=32.4
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++.+.+.+..-.....+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555555444456899999999999999999999987654
No 216
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.83 E-value=0.0093 Score=56.52 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 233 (557)
.|..+|..+-....++.|+|++|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44555554445578999999999999999999988765554 5567765
No 217
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.83 E-value=0.0091 Score=56.96 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|.++|..+-....++.|+|.+|+|||+|+.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455666555456789999999999999999999876545555666665
No 218
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.82 E-value=0.008 Score=63.67 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=41.9
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
..++--.+-++++..||.. +....+++.++|++|+||||.++.+++.+. |+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 4455556778888888865 333467999999999999999999998853 4555554
No 219
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.82 E-value=0.0093 Score=65.48 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=76.7
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCce
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKV 278 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~ 278 (557)
+-+.|+|++|+|||++|+.++......| +.+. .. .+.. ....... ..-...+.......++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~-------~~~~-------~~~g~~~-~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GS-------DFVE-------MFVGVGA-SRVRDMFEQAKKAAPC 246 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hH-------HhHH-------hhhcccH-HHHHHHHHHHHhcCCc
Confidence 4489999999999999999998764332 1111 00 0000 0000000 0001112222335689
Q ss_pred EEEEcCCCCHH----------------HHHHHhccCCCCC--CceEEEEEeCChhhhhcc-----ccceEEEcccCCHHH
Q 008685 279 LIVFDDVSCFN----------------QIESLIGSLDWFT--PRSTIIITTRDKQVLRNW-----GVKKIYEMEALEYDH 335 (557)
Q Consensus 279 LlVlDdv~~~~----------------~~~~l~~~l~~~~--~~~~IiiTsR~~~~~~~~-----~~~~~~~l~~L~~~e 335 (557)
+|++|+++... .+..++..+..+. .+.-+|.||..++.+... .....+.++..+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999995431 2333433333222 234455566655432211 124678888888888
Q ss_pred HHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 336 ALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 336 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
-.+++..+......... -....+++.+.|.
T Consensus 327 R~~Il~~~~~~~~l~~~---~d~~~la~~t~G~ 356 (644)
T PRK10733 327 REQILKVHMRRVPLAPD---IDAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHhhcCCCCCc---CCHHHHHhhCCCC
Confidence 88888877643221111 1134566666653
No 220
>PTZ00494 tuzin-like protein; Provisional
Probab=96.81 E-value=0.47 Score=48.44 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=109.3
Q ss_pred hHHHHHHHhHhhhc-------------ccCccccCCCc--chhhhHHHHHhhhcccccc------cCCCCCCCccccchh
Q 008685 125 KLQTWRNALREAAS-------------LSGFHSLNIRP--ESKLVKEVVNHILKRLATV------FPCVNNNQLVGVESR 183 (557)
Q Consensus 125 ~~~~w~~al~~~~~-------------~~g~~~~~~~~--e~~~i~~i~~~~~~~~~~~------~p~~~~~~~vGR~~~ 183 (557)
|...||.++++-+. ..||.+.+... .+-..+-.++...+..++. .|... ..+|.|+.|
T Consensus 301 KERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~-~~~V~R~~e 379 (664)
T PTZ00494 301 KDTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAE-AFEVRREDE 379 (664)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccc-ccccchhhH
Confidence 45578877765432 24566655442 1222223333333333222 23334 789999999
Q ss_pred HHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc
Q 008685 184 VEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV 262 (557)
Q Consensus 184 l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 262 (557)
-..+.+.|.+ ....++++.+.|.-|.|||+|.+..... +--..+++. ++ +.+.-+..+...++-..-.
T Consensus 380 E~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VR-------g~EDtLrsVVKALgV~nve 448 (664)
T PTZ00494 380 EALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VG-------GTEDTLRSVVRALGVSNVE 448 (664)
T ss_pred HHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ec-------CCcchHHHHHHHhCCCChh
Confidence 9999988876 4456899999999999999999877654 334556665 22 2222233344333332111
Q ss_pred cc-C-HHHHH-------HHHccCceEEEEc--CCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhh---ccccceEEEc
Q 008685 263 IL-N-IALSF-------RRLSRRKVLIVFD--DVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLR---NWGVKKIYEM 328 (557)
Q Consensus 263 ~~-~-~~~l~-------~~l~~k~~LlVlD--dv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~---~~~~~~~~~l 328 (557)
.- + .+.+. ....++.-+||+- +=.+..-+-.=.-.|..-..-|+|++----+.+.. .+....-|.+
T Consensus 449 ~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~V 528 (664)
T PTZ00494 449 VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCI 528 (664)
T ss_pred hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccceeEec
Confidence 11 1 22221 1223444455542 22222211110111222245577776433332111 1122357899
Q ss_pred ccCCHHHHHHHHHhcc
Q 008685 329 EALEYDHALELFSRHA 344 (557)
Q Consensus 329 ~~L~~~ea~~L~~~~~ 344 (557)
++++.++|.++.....
T Consensus 529 PnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 529 PPFSRRQAFAYAEHTL 544 (664)
T ss_pred CCcCHHHHHHHHhccc
Confidence 9999999999887654
No 221
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.81 E-value=0.0066 Score=55.56 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999888766556677765
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.81 E-value=0.0073 Score=57.60 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc------CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD------FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 233 (557)
.|..+|..+-....++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3445555444557899999999999999999998664322 25677776
No 223
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0098 Score=59.42 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=57.3
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcC-Ccc
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQD-NNV 262 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-~~~ 262 (557)
+.++...|-.+--...++.|-|.+|||||||..+++.++.... .+.++. .+ .+...+. --...+.-. .+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE-----ES~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE-----ESLQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC-----cCHHHHH-HHHHHhCCCccce
Confidence 4455566644333467899999999999999999999988776 666664 11 1222221 112222211 111
Q ss_pred ----ccCHHHHHHHHc-cCceEEEEcCC
Q 008685 263 ----ILNIALSFRRLS-RRKVLIVFDDV 285 (557)
Q Consensus 263 ----~~~~~~l~~~l~-~k~~LlVlDdv 285 (557)
+.+.+.+.+.+. .++-++|+|-+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 113566666654 57889999998
No 224
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.80 E-value=0.01 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.77 E-value=0.02 Score=55.66 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=96.8
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccC-CCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVR-PGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ 251 (557)
..++|-.++...+..++.+ --+...-+.|.|+.|.|||+|......+ .+.+.-...+......-.. .-.+..+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 5699999999999998865 1133456889999999999998877777 4455555555444333220 1122223333
Q ss_pred HHHHHhcCCc----cccCHHHHHHHHcc------CceEEEEcCCCCHH----H--HHHHhccC-CCCCCceEEEEEeCCh
Q 008685 252 LLSKLLQDNN----VILNIALSFRRLSR------RKVLIVFDDVSCFN----Q--IESLIGSL-DWFTPRSTIIITTRDK 314 (557)
Q Consensus 252 ll~~~~~~~~----~~~~~~~l~~~l~~------k~~LlVlDdv~~~~----~--~~~l~~~l-~~~~~~~~IiiTsR~~ 314 (557)
+..++..... ...+...+.+.|+. .+++.|+|.++--. + +-.+.... ....|-|-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 3222222111 11135566666643 35888888884221 1 22222111 1124667778899976
Q ss_pred hh-------hhccccceEEEcccCCHHHHHHHHHhcc
Q 008685 315 QV-------LRNWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 315 ~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.. -.....-.++-++.++.++-.++++...
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 22 1222222356667788888888888765
No 226
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0071 Score=67.06 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGV-------EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|-+..++.|...+.. .......+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999988887752 112245789999999999999999998873
No 227
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.74 E-value=0.031 Score=62.25 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|+...++.+.+.+..-......|.|+|.+|+|||++|+.+.+.-.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 4699999999988776654323445789999999999999999988643
No 228
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0085 Score=54.05 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=26.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC 230 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 230 (557)
+.|.++|.+|+||||+|++++..++++-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46889999999999999999998776644433
No 229
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.71 E-value=0.032 Score=59.78 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 6799999999999888866444456789999999999999999998744
No 230
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.70 E-value=0.0026 Score=55.74 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=30.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..+|.|+|.+|+||||||+++.+++......+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988776666664
No 231
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.02 Score=53.22 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..+=|.+-..+++.+...- +-+.++-|.++|++|+|||.||+++++.-...
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 4455677666777665421 33567889999999999999999999875443
No 232
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.66 E-value=0.0077 Score=55.64 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=58.5
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccc
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVI 263 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 263 (557)
.+.+...+. ++.+++.|.|++|.|||+++..+...+...-..+++.. .. ......+....... .
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-pT---------~~Aa~~L~~~~~~~---a 70 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-PT---------NKAAKELREKTGIE---A 70 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-SS---------HHHHHHHHHHHTS----E
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-Cc---------HHHHHHHHHhhCcc---h
Confidence 344444444 23468899999999999999999887766533333332 11 11222222222111 0
Q ss_pred cCHHHHHHHH----------ccCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 264 LNIALSFRRL----------SRRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 264 ~~~~~l~~~l----------~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
.++..+.... ..+.-+||+|++. +...+..++.... ..++++|+.--..
T Consensus 71 ~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 71 QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 0111111111 1234699999995 3456777766554 3577887765443
No 233
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.61 E-value=0.043 Score=53.45 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+.+++.++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998876553344444
No 234
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.60 E-value=0.0094 Score=53.18 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=61.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhc--C------CccccC----
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQ--D------NNVILN---- 265 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--~------~~~~~~---- 265 (557)
...|-|++..|.||||.|...+.+...+-..++.+....... ..+.......+.-.+.. . .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~--~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW--PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc--ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 357888888999999999999988766655555444333321 11222222221000000 0 000001
Q ss_pred ---HHHHHHHHccCc-eEEEEcCCC--------CHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 266 ---IALSFRRLSRRK-VLIVFDDVS--------CFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 266 ---~~~l~~~l~~k~-~LlVlDdv~--------~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
.+..++.+...+ =|||||.+. +.+.+..++ ....++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL---~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEAL---QERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHH---HhCCCCCEEEEECCCC
Confidence 233334444444 499999993 233333443 3345778999999987
No 235
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.58 E-value=0.084 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....|+|+|+.|+|||||.+.+.....
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 445799999999999999999976643
No 236
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.065 Score=50.12 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+=|-++.+++|.+.+.- +-..++-+..+|++|.|||-+|++.+.+-.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 3455677777777665421 123456789999999999999999887643
No 237
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.56 E-value=0.012 Score=61.52 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=38.3
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
-+..|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345566666554455789999999999999999999888765544566665
No 238
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.058 Score=50.16 Aligned_cols=150 Identities=18% Similarity=0.364 Sum_probs=82.8
Q ss_pred Cccc-cchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 176 QLVG-VESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 176 ~~vG-R~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..|| -+..++++.+.+.- +-..++-+.++|++|.|||-||+++++.- ...|+. +..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg------ 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG------ 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech------
Confidence 3454 46666666665432 12346678999999999999999999852 333433 221
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------H---HHHHHhccCCCCC--Cce
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------N---QIESLIGSLDWFT--PRS 305 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~~~~--~~~ 305 (557)
. .+.+...++...-. .+.+.-.-.+.+.++++|.+++. + ..-.++..++.+. .+.
T Consensus 215 -s-----elvqk~igegsrmv-relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 215 -S-----ELVQKYIGEGSRMV-RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred -H-----HHHHHHhhhhHHHH-HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 1 22222222211100 11111112456889999998532 1 1334556665443 567
Q ss_pred EEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhcc
Q 008685 306 TIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
+||+.|..-+++.. -.....++.++-+.+.-.+++.-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 78877755444322 1234567778777776666666543
No 239
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.54 E-value=0.031 Score=61.78 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.++|....+.++.+....-......|.|+|.+|+||+++|+.+.+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 568899988888877665422334458899999999999999998764
No 240
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.04 Score=55.86 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=84.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
.|--.++||||.|||++..++++.+. |+ ++.-....... + .. ++.++.. ...+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~---n-~d-Lr~LL~~------------------t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKL---D-SD-LRHLLLA------------------TPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccC---c-HH-HHHHHHh------------------CCCC
Confidence 45578999999999999999998752 33 22221211111 1 11 2222221 1346
Q ss_pred eEEEEcCCCCHH--------------------HHHHHhccCCC---CCCceEE-EEEeCChhhhhc-----cccceEEEc
Q 008685 278 VLIVFDDVSCFN--------------------QIESLIGSLDW---FTPRSTI-IITTRDKQVLRN-----WGVKKIYEM 328 (557)
Q Consensus 278 ~LlVlDdv~~~~--------------------~~~~l~~~l~~---~~~~~~I-iiTsR~~~~~~~-----~~~~~~~~l 328 (557)
-+||++|++..- .+.-|+..++. .+.+-|| |+||-..+-+.. -...-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 688888885321 12223333331 2223455 556655433211 123346788
Q ss_pred ccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhc
Q 008685 329 EALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLF 380 (557)
Q Consensus 329 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~ 380 (557)
+--+.+.-..|+......+. + ..+..+|.+...|.-+.=.+++..|-
T Consensus 368 gyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 88899999999998875432 2 34556666666666666666666553
No 241
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.52 E-value=0.015 Score=60.91 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=55.4
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCc--
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNN-- 261 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-- 261 (557)
+..|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.. ......+... ...+.....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-------Ees~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-------EESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-------cccHHHHHHH-HHHcCCChhcE
Confidence 345556665444456799999999999999999999887654445666652 1122222211 222221100
Q ss_pred ---cccCHHHHHHHHc-cCceEEEEcCC
Q 008685 262 ---VILNIALSFRRLS-RRKVLIVFDDV 285 (557)
Q Consensus 262 ---~~~~~~~l~~~l~-~k~~LlVlDdv 285 (557)
...+.+.+.+.+. .+.-++|+|.+
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSI 165 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEech
Confidence 0113455555554 35679999998
No 242
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.0038 Score=58.45 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=35.6
Q ss_pred hhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 190 LLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 190 ~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+|..+-....++.|+|++|+|||+++.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44444455789999999999999999999988766666788886
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.069 Score=53.76 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=28.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999987655433444443
No 244
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.49 E-value=0.003 Score=66.31 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=41.1
Q ss_pred CccccchhHHHHHHhhc----ccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 176 QLVGVESRVEEIESLLG----VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~----~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.++|.++.++++.+.|. ......+++.++||+|+|||+||+.+++-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 58999999999998882 23345689999999999999999999987654
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.48 E-value=0.0058 Score=57.58 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=37.7
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|..+|..+-....++.|+|.+|+||||||.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455666544455789999999999999999999988766555666765
No 246
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0095 Score=61.13 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCccccch---hHHHHHHhhcccC-------CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVES---RVEEIESLLGVEW-------EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~---~l~~l~~~L~~~~-------~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+-|-|+ |++++.+.|.... .=++-|.++|++|.|||-||++++-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34567665 5556666675421 125678999999999999999999764
No 247
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.47 E-value=0.0022 Score=54.54 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=20.5
Q ss_pred EEEeccCCCchhHHHHHHHHHh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 248
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.42 E-value=0.018 Score=54.62 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=28.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
....++.|.|++|+||||||.+++.....+-..++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34569999999999999999888777644445556654
No 249
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.37 E-value=0.0021 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.5
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccC
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
|.|+|++|+|||+||..++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56999999999999999998876543
No 250
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.37 E-value=0.007 Score=61.24 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=54.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCC---ceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFE---GSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
...|.|+|+.|+||||++..+...+....+ .++.+.+.-+... ...... .....+.........-...++..|+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~--~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY--DEIETI-SASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec--cccccc-cceeeeeeccccccCHHHHHHHHhc
Confidence 468999999999999999999988754432 1222221111110 000000 0000000000000011566777888
Q ss_pred cCceEEEEcCCCCHHHHHHHhc
Q 008685 275 RRKVLIVFDDVSCFNQIESLIG 296 (557)
Q Consensus 275 ~k~~LlVlDdv~~~~~~~~l~~ 296 (557)
..+-.+++..+.+.+.....+.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALE 232 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHH
Confidence 8999999999998887765543
No 251
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.022 Score=57.59 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=25.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
...+++++|+.|+||||++..++......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 357999999999999999999998865443
No 252
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.36 E-value=0.02 Score=52.78 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++++.++|+.|+||||.+.+++.+...+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 468999999999999999999988776644455554
No 253
>PRK14974 cell division protein FtsY; Provisional
Probab=96.36 E-value=0.044 Score=54.79 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++.++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999877654
No 254
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.35 E-value=0.021 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
...+++|.|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999998853
No 255
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.016 Score=52.24 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=26.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|.|+.|.|||||.+.++..... ..+.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 4568999999999999999999876432 3344443
No 256
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.34 E-value=0.0042 Score=69.20 Aligned_cols=179 Identities=18% Similarity=0.136 Sum_probs=83.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH-hhccCCceEEEEe--------ccccccCCCChHHHHHHHHHHHhcCCccccCHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK-ISSDFEGSCFLQN--------VREESVRPGGLACLQLKLLSKLLQDNNVILNIAL 268 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~-~~~~f~~~~~~~~--------~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 268 (557)
.+.++|+|+.|.|||||.+.+.-. +..+. ++++.. ..........-..+. +-++.+.. ....
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~~Vpa~~~~~~~~~d~i~~~i~~~~si~-~~LStfS~------~m~~ 392 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQS--GIPIPANEHSEIPYFEEIFADIGDEQSIE-QNLSTFSG------HMKN 392 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHh--CCCccCCccccccchhheeeecChHhHHh-hhhhHHHH------HHHH
Confidence 478999999999999999998765 11111 111110 000000000000110 00111100 0222
Q ss_pred HHHHHc--cCceEEEEcCCC---CHHHHH----HHhccCCCCCCceEEEEEeCChhhhhccccc---eEEEcccCCHHHH
Q 008685 269 SFRRLS--RRKVLIVFDDVS---CFNQIE----SLIGSLDWFTPRSTIIITTRDKQVLRNWGVK---KIYEMEALEYDHA 336 (557)
Q Consensus 269 l~~~l~--~k~~LlVlDdv~---~~~~~~----~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~---~~~~l~~L~~~ea 336 (557)
+...+. ..+-|+++|... ++.... .++..+. ..|+.+|+||....+....... ....+. ++. +.
T Consensus 393 ~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~ 468 (771)
T TIGR01069 393 ISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ET 468 (771)
T ss_pred HHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CC
Confidence 222232 478999999993 333322 2333332 3578899999987653321111 111111 111 11
Q ss_pred HHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHhhh
Q 008685 337 LELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINKLK 395 (557)
Q Consensus 337 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~l~ 395 (557)
.....+.. .+.+. ...+-.|++++ |+|-.+..-|..+..........++.++.
T Consensus 469 l~p~Ykl~--~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 469 LSPTYKLL--KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CceEEEEC--CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111111 11222 34566777766 78877777777765544444555555543
No 257
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.32 E-value=0.0034 Score=58.02 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999998754
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.002 Score=36.12 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.3
Q ss_pred ccccccccCCcceeEeccccCCC
Q 008685 534 KLEMMSFRINRRLTVIENTKTGN 556 (557)
Q Consensus 534 ~L~~l~l~~~~~~~~l~~~~~~~ 556 (557)
+|++|+|++| .|++||++++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4899999999 999999998875
No 259
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.32 E-value=0.011 Score=51.73 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=55.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
...+++|.|+.|.|||||++.++.... .....+++........ ... + .......-.+.+.+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~-~~~-----------l---S~G~~~rv~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY-FEQ-----------L---SGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE-Ecc-----------C---CHHHHHHHHHHHHHhcC
Confidence 456899999999999999999887543 2334444432111100 000 0 00000122334455567
Q ss_pred ceEEEEcCCC---CHHHHHHHhccCCCCCCceEEEEEeCChhhhh
Q 008685 277 KVLIVFDDVS---CFNQIESLIGSLDWFTPRSTIIITTRDKQVLR 318 (557)
Q Consensus 277 ~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~ 318 (557)
+-++++|+-. |......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7799999982 333333333322222 246788887765443
No 260
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.31 E-value=0.0027 Score=61.57 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=23.7
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
+.|.|+|.||+||||+|+++...+...-..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4789999999999999999999877643334444
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.043 Score=55.98 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998765
No 262
>PRK07261 topology modulation protein; Provisional
Probab=96.31 E-value=0.0028 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 263
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.014 Score=62.26 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...++..++|++|+||||||.-++++. .|.. +=+. .+. ......+-..+...+....... ...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYsV-vEIN----ASD-eRt~~~v~~kI~~avq~~s~l~---------ads 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYSV-VEIN----ASD-ERTAPMVKEKIENAVQNHSVLD---------ADS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--CceE-EEec----ccc-cccHHHHHHHHHHHHhhccccc---------cCC
Confidence 447899999999999999999999863 2221 1111 222 3333444444444333321110 126
Q ss_pred CceEEEEcCCCC
Q 008685 276 RKVLIVFDDVSC 287 (557)
Q Consensus 276 k~~LlVlDdv~~ 287 (557)
++..||+|.++-
T Consensus 387 rP~CLViDEIDG 398 (877)
T KOG1969|consen 387 RPVCLVIDEIDG 398 (877)
T ss_pred CcceEEEecccC
Confidence 789999999964
No 264
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.75 Score=45.34 Aligned_cols=167 Identities=8% Similarity=0.074 Sum_probs=95.5
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc---------CC-ceEEEEeccccccCCCChHHHHHHHH
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD---------FE-GSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
++.+.+.+..+ .-.++..++|..|+||+++|..+++.+-.. .+ ...++. ..+. .-....+. .+.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g~---~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFDK---DLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCCC---cCCHHHHH-HHH
Confidence 34455555432 235788899999999999999999986221 11 112221 0010 11112211 122
Q ss_pred HHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cccceEEEcc
Q 008685 254 SKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WGVKKIYEME 329 (557)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~~~~~~~l~ 329 (557)
..+.-.. .-.+.+-++|+|+++.. .....++..+...++++.+|++|.+. .+.+. ......+++.
T Consensus 79 ~~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 79 NKLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred HHhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 2111100 00146678899998644 34666777776667777777666543 44433 3456889999
Q ss_pred cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 330 ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 330 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+++.++..+.+.... . + ++.+..++..++|.=-|+..+
T Consensus 148 ~l~~~~l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 148 EPDQQKILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCHHHHHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHHH
Confidence 999999998887641 1 1 345666777777633455443
No 265
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.28 E-value=0.007 Score=54.13 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
...+++|.|+.|.|||||.+.++-... ...+.+++.... .. ..............+..-.......-.+.+.+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS--FASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC--cCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 456899999999999999999986543 234445543211 10 11111110000000000000000133344555667
Q ss_pred ceEEEEcCCC---CHHHHHHHhccCCCC-CCceEEEEEeCChhhhh
Q 008685 277 KVLIVFDDVS---CFNQIESLIGSLDWF-TPRSTIIITTRDKQVLR 318 (557)
Q Consensus 277 ~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~IiiTsR~~~~~~ 318 (557)
+-++++|+-. |....+.+...+... ..+..||++|.+.....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8899999983 333333332222211 23667888888865433
No 266
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.26 E-value=0.079 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|.|.+|+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 267
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.26 E-value=0.026 Score=50.64 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=57.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecc---ccccCCC-ChHHHHHHHHHHHhcCCcccc---CHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVR---EESVRPG-GLACLQLKLLSKLLQDNNVIL---NIALS 269 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---~~~~~~~-~~~~l~~~ll~~~~~~~~~~~---~~~~l 269 (557)
....++|.|+.|.|||||++.++..... ..+.+++.... -...... ....+...+... ....... ..-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHHH
Confidence 4568999999999999999999876432 22222221100 0011010 111222222110 1000111 13344
Q ss_pred HHHHccCceEEEEcCCC---CHHHHHHHhccCCCCCCceEEEEEeCChhhh
Q 008685 270 FRRLSRRKVLIVFDDVS---CFNQIESLIGSLDWFTPRSTIIITTRDKQVL 317 (557)
Q Consensus 270 ~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~ 317 (557)
.+.+-.++-++++|+-. |....+.+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45556678899999872 333333333322222 35677777776544
No 268
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.25 E-value=0.11 Score=49.21 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc------cCCceEEEEeccc---------c-
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS------DFEGSCFLQNVRE---------E- 238 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~---------~- 238 (557)
+.+.++++.-..|.++... .+.+-..++|++|.||-|.+..+.+++.. +-+...|...... .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 4577788777777776652 34667889999999999999999888533 1222233221111 0
Q ss_pred ------ccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCce-EEEEcCCCCH--HHHHHHhccCCCCCCceEEEE
Q 008685 239 ------SVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKV-LIVFDDVSCF--NQIESLIGSLDWFTPRSTIII 309 (557)
Q Consensus 239 ------~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~~Iii 309 (557)
|.....-..+..+++..+.+....+. ...+++ ++|+-.++.. +.-..+..........+|+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~--------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET--------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh--------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 00011112223333333333221111 112344 5566555432 222333333334467888877
Q ss_pred EeCChh--hhhccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 310 TTRDKQ--VLRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 310 TsR~~~--~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..-+.+ +.+.-...-.++++..+++|....++..+-+....-+ .+.+.+|+++++|+-
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNL 222 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccH
Confidence 544321 1222223456899999999999999987755544333 789999999999984
No 269
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.22 E-value=0.023 Score=55.17 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=37.5
Q ss_pred HhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 189 SLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 189 ~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.+..+-...+++.|+|.+|+|||+++.+++.....+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344444456789999999999999999999999888888888886
No 270
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.036 Score=59.26 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=81.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHH-HHHHcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALS-FRRLSR 275 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l-~~~l~~ 275 (557)
..+.+.++|++|.|||.||++++......|-.+..- . ++....++. ..++..+ ....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--------------~----l~sk~vGes--ek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--------------E----LLSKWVGES--EKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--------------H----HhccccchH--HHHHHHHHHHHHcC
Confidence 456899999999999999999999654433221110 0 111111110 0012222 222346
Q ss_pred CceEEEEcCCCCH-------------HHHHHHhccCCCCCC--ceEEEEEeCChhhhhcc-----ccceEEEcccCCHHH
Q 008685 276 RKVLIVFDDVSCF-------------NQIESLIGSLDWFTP--RSTIIITTRDKQVLRNW-----GVKKIYEMEALEYDH 335 (557)
Q Consensus 276 k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--~~~IiiTsR~~~~~~~~-----~~~~~~~l~~L~~~e 335 (557)
.++.|.+|+++.. .....++..+..... +..||-||-.+...... .....+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 7899999999421 233444444432222 33344455444332211 234678899999999
Q ss_pred HHHHHHhccccCCCCCCChHHHHHHHHHHcCC
Q 008685 336 ALELFSRHAFKQIHPAVGYEELSSKVMEYAQG 367 (557)
Q Consensus 336 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 367 (557)
..+.|..+......+ -...-....+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 999999887433221 0112334556666666
No 271
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.20 E-value=0.017 Score=52.37 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=63.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH-----hc-----CCccccC--
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL-----LQ-----DNNVILN-- 265 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-----~~-----~~~~~~~-- 265 (557)
...|.|+|..|-||||.|...+-+...+-..+..+....... ..+-...+..+. .+ .. ..+...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~--~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW--STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 468899999999999999999988766655555555444321 112222222210 00 00 0000001
Q ss_pred -----HHHHHHHHccCc-eEEEEcCCCCH-----HHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 266 -----IALSFRRLSRRK-VLIVFDDVSCF-----NQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 266 -----~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
.+..++.+...+ =|||||.+... -..+.+...+....++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 233344444444 59999999321 12233333333345778999999986
No 272
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.20 E-value=0.012 Score=55.51 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=31.8
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
+..++.+.+.....+..+|+|+|+||.|||||..++...+..+-.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~ 58 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGK 58 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCC
Confidence 344455554444456789999999999999999999998876533
No 273
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.20 E-value=0.028 Score=51.21 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHH------HHHHHHhcC-----CccccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQL------KLLSKLLQD-----NNVILN 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~------~ll~~~~~~-----~~~~~~ 265 (557)
...+++|.|+.|.|||||++.++-... ...+.+++.... .. ......... +++..+.-. ......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 456899999999999999999987543 234445543211 10 111111111 122222111 111111
Q ss_pred -----HHHHHHHHccCceEEEEcCCC---CHHHHHHHhccCCCC-CC-ceEEEEEeCChhhh
Q 008685 266 -----IALSFRRLSRRKVLIVFDDVS---CFNQIESLIGSLDWF-TP-RSTIIITTRDKQVL 317 (557)
Q Consensus 266 -----~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-~~~IiiTsR~~~~~ 317 (557)
.-.+.+.+-..+-++++|+-. |....+.+...+... .. +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 334455566788899999983 333333333222211 22 56788888876544
No 274
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.18 E-value=0.034 Score=52.81 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|.++|..+-.....+.|.|.+|+|||+|+.+++.........++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 455555444445689999999999999999998876545556677775
No 275
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.17 E-value=0.004 Score=46.66 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 276
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.16 E-value=0.036 Score=55.03 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS------DFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 233 (557)
..|..+|..+-....++-|+|++|+|||+|+.+++-...- .-..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 3455666655456788999999999999999988754321 123567776
No 277
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.017 Score=61.27 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=40.1
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
-+..|.++|..+-....++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345677777665556789999999999999999999998766666666654
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.15 E-value=0.056 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887665
No 279
>PRK06762 hypothetical protein; Provisional
Probab=96.15 E-value=0.0046 Score=55.48 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.+|.|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 280
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.037 Score=56.51 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 281
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.017 Score=54.90 Aligned_cols=122 Identities=23% Similarity=0.185 Sum_probs=67.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCc------ccc-----C
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNN------VIL-----N 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------~~~-----~ 265 (557)
...+++|+|.+|+|||||++.+..-...... .+++....-.............+++..++-... .+. +
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4568999999999999999999986554333 333331110000011222334444544432111 111 1
Q ss_pred HHHHHHHHccCceEEEEcCCCCH------HHHHHHhccCCCCCCceEEEEEeCChhhhhcc
Q 008685 266 IALSFRRLSRRKVLIVFDDVSCF------NQIESLIGSLDWFTPRSTIIITTRDKQVLRNW 320 (557)
Q Consensus 266 ~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~ 320 (557)
.-.+.+.+.-++-++|.|..-+. .++-.++..+.. ..|...+..|.+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 34556777788999999988322 233344433321 2355667777776665543
No 282
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.046 Score=58.21 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHhh---cccC-------CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLL---GVEW-------EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L---~~~~-------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
....|.++..+++.+.+ .... .-++-+.++|++|.|||.||++++-...-.|-.. + ..+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i---S--------GS~ 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI---S--------GSD 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec---c--------chh
Confidence 66889887777666554 3221 2256789999999999999999998754332210 0 000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCCCCce-EE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWFTPRS-TI 307 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~~~-~I 307 (557)
+.. -..+- +...-.+...+..++-++++++|.++.. ..+..++...+.++.+. -|
T Consensus 219 FVe-------mfVGv-GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 219 FVE-------MFVGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred hhh-------hhcCC-CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 000 00000 0000123334455667899999988431 13445555555555322 23
Q ss_pred EEE-eCChhhhh-----ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchh
Q 008685 308 IIT-TRDKQVLR-----NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 308 iiT-sR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 371 (557)
+++ |-.++++. .-...+.+.++.-+...-.+.+.-++-....... -+ ...|++.+-|.-.|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSGA 357 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCcccc
Confidence 332 22233321 1123456667666666666667655533322211 11 23377777776543
No 283
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.12 E-value=0.018 Score=58.28 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=59.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
.++-+-|||..|.|||.|+-.+|+.+..+-.. ...+......+-..+............+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~-------------R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR-------------RVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc-------------cccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 46778999999999999999999986432111 11222222333333322222222356666777778
Q ss_pred ceEEEEcCC--CCHH---HHHHHhccCCCCCCceEEEEEeC
Q 008685 277 KVLIVFDDV--SCFN---QIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 277 ~~LlVlDdv--~~~~---~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
..||.||.+ .|.. -+..++..+- ..|..+|.||-
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 889999988 3333 3455554442 45665555553
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.12 E-value=0.23 Score=51.17 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=27.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+.+|.++|++|+||||++..++..+..+...+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999998776543333333
No 285
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.12 E-value=0.016 Score=48.79 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=50.8
Q ss_pred eEEEecccccccCchHHHHHHHHhhCCCceEe-eCCCCCCCcchHHHHHHHHhhceEEEEecCC
Q 008685 2 MFFLSFRGEDTRDNFASHLFSALSQKSIETFI-DDQLNRGDEISESLMNAIEASAISLIIFSEG 64 (557)
Q Consensus 2 dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~-d~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~ 64 (557)
.|||.|+ +| ..++..+...|+..|+.+.. ++....|..+.+.+.+.+.+++.+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899997 66 46889999999988888644 3355889999999999999999999999994
No 286
>PRK08233 hypothetical protein; Provisional
Probab=96.12 E-value=0.0044 Score=56.45 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998753
No 287
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.12 E-value=0.031 Score=54.81 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999887544
No 288
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.11 E-value=0.0053 Score=57.47 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=24.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+..+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 289
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.11 E-value=0.0058 Score=59.70 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=68.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
+.+.-.....+.+.++|...-...+.+.|.|+.|+||||++..+...+...-...+-+....+.......
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~---------- 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN---------- 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc----------
Confidence 3444444455566666643223467899999999999999999998766552333333322221110000
Q ss_pred HHhcCC-ccccC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEE-EEEeCC
Q 008685 255 KLLQDN-NVILN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTI-IITTRD 313 (557)
Q Consensus 255 ~~~~~~-~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~I-iiTsR~ 313 (557)
...-.. ....+ .+.+...|+..+=.++++.+.+.+....+... ..|..+ +.|...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 000000 01112 56677788888889999999887777664333 346666 444443
No 290
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.10 E-value=0.0078 Score=57.19 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCCcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 195 WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 195 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
..+..+++|.|++|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998876543
No 291
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.09 E-value=0.005 Score=63.78 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 67999999999988877532 35889999999999999999987654
No 292
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.08 E-value=0.039 Score=55.34 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc--c----CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS--D----FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~----f~~~~~~~ 233 (557)
.|.++|..+-....++-|+|++|+|||+|+.+++-.... . -..++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 455566554455788899999999999999998754321 1 23567776
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.038 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|.|||||++.++-..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 294
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.07 E-value=0.0035 Score=52.56 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccCCc
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDFEG 228 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 228 (557)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999998777654
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.06 E-value=0.038 Score=55.27 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 233 (557)
..+.++|..+-....++-|+|++|+|||+|+.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 345555654444578899999999999999999997753321 3567776
No 296
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.06 E-value=0.0079 Score=51.29 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=29.5
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+..++-+.|...-....++.+.|.-|.|||||++.+++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444444433223456899999999999999999998753
No 297
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.05 E-value=0.019 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.8
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+|.++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887644
No 298
>PRK04328 hypothetical protein; Provisional
Probab=96.04 E-value=0.032 Score=53.72 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|.++|..+-....++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455566544445789999999999999999999877555556667765
No 299
>PTZ00301 uridine kinase; Provisional
Probab=96.04 E-value=0.0059 Score=56.88 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=24.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
..+|+|.|.+|+||||||+.+.+.+...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875443
No 300
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.02 E-value=0.01 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.9
Q ss_pred EEEeccCCCchhHHHHHHHHHh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 301
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.02 E-value=0.011 Score=57.29 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
....++.|.|++|+|||+||.+++......-..++++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999999999999999999887655556677776
No 302
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.025 Score=54.36 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=25.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
.+..++|||++|.|||-+|+.++..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999865444
No 303
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.99 E-value=0.024 Score=49.86 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998753
No 304
>PRK04040 adenylate kinase; Provisional
Probab=95.97 E-value=0.0071 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|+|+|++|+||||+++.+.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999874
No 305
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.96 E-value=0.071 Score=57.19 Aligned_cols=47 Identities=23% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..++|....++++.+.+..-......|.|+|..|+||+.+|+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 57999999888887766542223345889999999999999997654
No 306
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.96 E-value=0.006 Score=55.11 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....|.|+|++|+||||+|+.++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999986
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.016 Score=52.46 Aligned_cols=105 Identities=22% Similarity=0.185 Sum_probs=55.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecc--ccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVR--EESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
...+++|.|+.|.|||||++.++..... ....+.+.... -... ... + .......-.+...+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~-----------L---SgGq~qrv~laral~ 87 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YID-----------L---SGGELQRVAIAAALL 87 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCC-----------C---CHHHHHHHHHHHHHh
Confidence 3468999999999999999998865432 23333332110 0000 100 0 000001233444555
Q ss_pred cCceEEEEcCCC---CHHHHHH---HhccCCCCCCceEEEEEeCChhhhh
Q 008685 275 RRKVLIVFDDVS---CFNQIES---LIGSLDWFTPRSTIIITTRDKQVLR 318 (557)
Q Consensus 275 ~k~~LlVlDdv~---~~~~~~~---l~~~l~~~~~~~~IiiTsR~~~~~~ 318 (557)
.++-++++|+-. |....+. ++..+.. ..+..||++|.+.....
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 677899999982 3333222 2222211 12356777777765444
No 308
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.94 E-value=0.03 Score=54.00 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc--c----CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS--D----FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~----f~~~~~~~ 233 (557)
.|.++|..+-....+.=|+|++|+|||+|+.+++-...- + -..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 566666544444678899999999999999998865321 1 22467775
No 309
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.94 E-value=0.018 Score=55.21 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=36.0
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+|...+.....+..+|+|+|.||+|||||..++..++..+-..+..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 345555554456778999999999999999999999887665544433
No 310
>PRK03839 putative kinase; Provisional
Probab=95.93 E-value=0.0059 Score=55.63 Aligned_cols=24 Identities=42% Similarity=0.678 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999863
No 311
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.92 E-value=0.0073 Score=56.41 Aligned_cols=28 Identities=39% Similarity=0.621 Sum_probs=24.6
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567999999999999999999998754
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.92 E-value=0.015 Score=55.56 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=37.4
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|.++|..+-....++.|.|++|+|||+||.+++......-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455666555556789999999999999999999877555566677765
No 313
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.063 Score=51.13 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=68.8
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
...=|-+..+++|.+...- +-..++-|.++|.+|.|||-||+++++.-...|-.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlR--------------- 249 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLR--------------- 249 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhh---------------
Confidence 3455788888888876532 12345678899999999999999999975443321
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------------HHHHHHhccCCCCCC--c
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------------NQIESLIGSLDWFTP--R 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~--~ 304 (557)
.+...+++...++...- ...+.+.. .+.+.++++|.++.. ...-.++..+..+.. .
T Consensus 250 ---vvGseLiQkylGdGpkl--vRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 250 ---VVGSELIQKYLGDGPKL--VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred ---hhhHHHHHHHhccchHH--HHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 12223344433332110 11222222 356788999988421 123356666665543 3
Q ss_pred eEEEEEeCC
Q 008685 305 STIIITTRD 313 (557)
Q Consensus 305 ~~IiiTsR~ 313 (557)
.+||+.|..
T Consensus 325 vKvimATnr 333 (440)
T KOG0726|consen 325 VKVIMATNR 333 (440)
T ss_pred eEEEEeccc
Confidence 466766543
No 314
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.88 E-value=0.01 Score=55.62 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.+.+.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998853
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.18 Score=54.01 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=78.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHH-HccCc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRR-LSRRK 277 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-l~~k~ 277 (557)
.-|.++|++|+|||-||.+++.... .-|+. ..+. +++.+..+... .++..+..+ -..++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~-----~~fis--------vKGP-----ElL~KyIGaSE--q~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSN-----LRFIS--------VKGP-----ELLSKYIGASE--QNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCC-----eeEEE--------ecCH-----HHHHHHhcccH--HHHHHHHHHhhccCC
Confidence 4588999999999999999987532 12332 1222 23333333221 123333333 34689
Q ss_pred eEEEEcCCCC-------------HHHHHHHhccCCCC--CCceEEEE-EeCChhhhhc---cc-cceEEEcccCCHHHHH
Q 008685 278 VLIVFDDVSC-------------FNQIESLIGSLDWF--TPRSTIII-TTRDKQVLRN---WG-VKKIYEMEALEYDHAL 337 (557)
Q Consensus 278 ~LlVlDdv~~-------------~~~~~~l~~~l~~~--~~~~~Iii-TsR~~~~~~~---~~-~~~~~~l~~L~~~ea~ 337 (557)
++|.||.+++ +..+..++..++.. -.|.-|+. |||..-+-+. .+ ..+.+.-+.-+..|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999954 22456666666521 23444554 5554422111 11 1223333444555666
Q ss_pred HHHHhccccCCCCCCChHHHHHHHHHHcCCCchh
Q 008685 338 ELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 338 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 371 (557)
+++......-..+. ....+.++.++.|..-|
T Consensus 842 ~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 66665442211111 23356677777776543
No 316
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.069 Score=49.34 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHHHHHccCceEEEEcCCCCH---HHH---HHHhccCCCCCCceEEEEEeCChhhhhccccceEE
Q 008685 266 IALSFRRLSRRKVLIVFDDVSCF---NQI---ESLIGSLDWFTPRSTIIITTRDKQVLRNWGVKKIY 326 (557)
Q Consensus 266 ~~~l~~~l~~k~~LlVlDdv~~~---~~~---~~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~~~~ 326 (557)
...+.+.+--+|-+.|||..++- +.+ ......+. .+++.+|+.|....++....+..++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34555555567889999998643 222 22233333 4566677777777777766544443
No 317
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.88 E-value=0.049 Score=54.33 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=34.7
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc------CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD------FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 233 (557)
.+..+|..+-....++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 4555665444457889999999999999999998775421 12577776
No 318
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.028 Score=54.40 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEec
Q 008685 187 IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNV 235 (557)
Q Consensus 187 l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 235 (557)
|..+|..+-...+++=|+|+.|.||||+|.+++-.....-..++|++.-
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 4445544555678999999999999999999998877777788998733
No 319
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.87 E-value=0.046 Score=49.38 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999998754
No 320
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.046 Score=50.37 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=56.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc---CC-ceEEEEecc-ccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD---FE-GSCFLQNVR-EESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS 274 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~---f~-~~~~~~~~~-~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 274 (557)
-..|.|++|+|||||.+.+++-+... |. ..+-+.+-+ +......+........--++..... ...-.+...-.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp--k~~gmmmaIrs 216 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP--KAEGMMMAIRS 216 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch--HHHHHHHHHHh
Confidence 36799999999999999999887654 32 222222111 1111011111111111111111000 00112222223
Q ss_pred cCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 275 RRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 275 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
..+=++|+|.+-..++..+++..+ ..|.+++.|..-.
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 457799999997777766666553 4677877776543
No 321
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.1 Score=54.18 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh--ccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS--SDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 233 (557)
.+++.++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3333444443
No 322
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.013 Score=53.14 Aligned_cols=36 Identities=36% Similarity=0.329 Sum_probs=27.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+|+|.|++|+||||+|+.++..+........++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356899999999999999999999875433233444
No 323
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.82 E-value=0.031 Score=59.11 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=61.4
Q ss_pred cccch-hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH
Q 008685 178 VGVES-RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL 256 (557)
Q Consensus 178 vGR~~-~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 256 (557)
.|... .++.+..++. ....++.|+|+.|.||||+...+.+.+...-..++-+.+..+... .+. .+.
T Consensus 224 Lg~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~ 290 (486)
T TIGR02533 224 LGMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQI 290 (486)
T ss_pred cCCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceE
Confidence 34433 3445555553 234589999999999999999888776543223333332211111 010 010
Q ss_pred hcCCccccC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhc
Q 008685 257 LQDNNVILN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIG 296 (557)
Q Consensus 257 ~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~ 296 (557)
.-......+ ...++..|+..+=.+++.++.+.+.....+.
T Consensus 291 ~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~ 331 (486)
T TIGR02533 291 QVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQ 331 (486)
T ss_pred EEccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHH
Confidence 000111112 5677888888999999999999887655443
No 324
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.81 E-value=0.088 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+..|.|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999998754
No 325
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.80 E-value=0.1 Score=46.28 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=28.4
Q ss_pred ccchhHHHHHHhhcccC-CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 179 GVESRVEEIESLLGVEW-EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~-~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
|.+..++.+.+.+.... .....++++|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 44445555555442211 22456789999999999999998753
No 326
>PRK06547 hypothetical protein; Provisional
Probab=95.79 E-value=0.0089 Score=53.85 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....+|+|.|++|+||||+|..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999874
No 327
>PRK00625 shikimate kinase; Provisional
Probab=95.77 E-value=0.0074 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998763
No 328
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.19 Score=54.22 Aligned_cols=99 Identities=26% Similarity=0.374 Sum_probs=56.8
Q ss_pred cCCCCCCCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc
Q 008685 169 FPCVNNNQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE 238 (557)
Q Consensus 169 ~p~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 238 (557)
.|.+.=+.+=|-++...+|.+-+.- +-.+..-|.++|++|.|||-||++|+-...-. |++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS----- 735 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS----- 735 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-----
Confidence 3433324455667666666654422 11223458899999999999999999864322 222
Q ss_pred ccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHc-cCceEEEEcCCCC
Q 008685 239 SVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLS-RRKVLIVFDDVSC 287 (557)
Q Consensus 239 ~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 287 (557)
..+. +++.-..++. +.++..+.++.+ .++++|.||.+++
T Consensus 736 ---VKGP-----ELLNMYVGqS--E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 736 ---VKGP-----ELLNMYVGQS--EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---ecCH-----HHHHHHhcch--HHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 2222222221 123444444444 5899999999964
No 329
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.011 Score=54.40 Aligned_cols=30 Identities=43% Similarity=0.632 Sum_probs=26.6
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..+.+|+|.|.+|+||||+|+.++..+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999998755
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.15 Score=53.66 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=32.0
Q ss_pred ccchhHHHHHHhhccc----CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 179 GVESRVEEIESLLGVE----WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~----~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++...+..|.+.+... -....+++|+|++|+||||++..++..+...
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4444445555544221 1235799999999999999999998876544
No 331
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.73 E-value=0.073 Score=52.49 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=29.1
Q ss_pred cccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHH
Q 008685 178 VGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 178 vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~ 219 (557)
-+|..+..--.++|.. +....|.+.|.+|.|||-||.+..
T Consensus 227 ~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 227 RPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHH
Confidence 3455555544455543 468899999999999999988665
No 332
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.71 E-value=0.0093 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999998753
No 333
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.71 E-value=0.027 Score=57.28 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHhhccc------------CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE------------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~------------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.++..+.+.-.+... ...++-|.++|++|+|||++|+.++..+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 56888888777776544321 1124678999999999999999999987544
No 334
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.1 Score=46.73 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=25.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCF 231 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 231 (557)
...+.|.|+.|+|||||.+.++--.+..-..+.|
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~ 61 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEe
Confidence 4578999999999999999998765544333333
No 335
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.69 E-value=0.012 Score=53.40 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887643
No 336
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.69 E-value=0.14 Score=49.97 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=30.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
....++.|.|.+|+|||+++.+++.....+ -..++|+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345689999999999999999999886555 45566665
No 337
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.68 E-value=0.016 Score=51.98 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=34.1
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888888776533334678899999999999999999854
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.68 E-value=0.0092 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=23.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999764
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.0089 Score=51.81 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999864
No 340
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.67 E-value=0.031 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+.++|.|.+|+|||+|+.++++...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEEcCcccccchhhHHHHhccc
Confidence 45789999999999999999999864
No 341
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.67 E-value=0.25 Score=52.42 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|+...+..+...+..-......+.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999998888887775433445578999999999999999988764
No 342
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.65 E-value=0.08 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
++++|+|+.|.|||||.+.+.-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999988653
No 343
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.65 E-value=0.054 Score=50.55 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998875
No 344
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.62 E-value=0.022 Score=56.02 Aligned_cols=100 Identities=21% Similarity=0.389 Sum_probs=59.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH-hc-----------CCcccc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL-LQ-----------DNNVIL 264 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-~~-----------~~~~~~ 264 (557)
+..-+++.|-+|+|||.|.+++.+.+..+......+..+++.+... ..+..++...- .. ......
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREG---ndLy~Em~es~vl~ktalv~gQMNEpPGaR~ 222 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREG---NDLYHEMKESGVLDKTALVFGQMNEPPGARM 222 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccch---HHHHHHHHhcCCCCceeEEEeecCCCCccee
Confidence 3457899999999999999999999887776666655666554322 22222222211 00 000000
Q ss_pred C-------HHHHHHHHccCceEEEEcCCCCH----HHHHHHhccCC
Q 008685 265 N-------IALSFRRLSRRKVLIVFDDVSCF----NQIESLIGSLD 299 (557)
Q Consensus 265 ~-------~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~ 299 (557)
. .+...+--.++.+|+.+||+..- .++..++...+
T Consensus 223 RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 223 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred eehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 0 22222333467899999999432 34666666555
No 345
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.62 E-value=0.018 Score=53.33 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
....+++|+|++|+||||||+.+...+.......+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567999999999999999999999875543344555
No 346
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.018 Score=50.77 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+..+|.++|.+|.||||+|.++...+....-.....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3467999999999999999999999987665444433
No 347
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.61 E-value=0.0095 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEeccCCCchhHHHHHHHHHhhc
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
|.|+|.+|+|||||++.+++.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 348
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.69 Score=45.14 Aligned_cols=127 Identities=7% Similarity=0.006 Sum_probs=72.8
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-------------CCceEEEEeccccccCCCChHHHHH
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-------------FEGSCFLQNVREESVRPGGLACLQL 250 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~l~~ 250 (557)
.++|...+..+ .-.....++|+.|+||+++|.+++..+-.. .+...++..... .. .-....
T Consensus 6 ~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~-~I~idq--- 79 (290)
T PRK05917 6 WEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GR-LHSIET--- 79 (290)
T ss_pred HHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CC-cCcHHH---
Confidence 34566666533 235678899999999999999999875321 222333321000 00 001111
Q ss_pred HHHHHHhcCCccccCHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhhc-cc
Q 008685 251 KLLSKLLQDNNVILNIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLRN-WG 321 (557)
Q Consensus 251 ~ll~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~-~~ 321 (557)
...+.+.+ .++.-++|+|+++. .+....++..+....+++.+|++|.+. .+++. ..
T Consensus 80 ---------------iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 80 ---------------PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred ---------------HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 11222222 24455889999964 456777777776667777777777664 34433 34
Q ss_pred cceEEEcccC
Q 008685 322 VKKIYEMEAL 331 (557)
Q Consensus 322 ~~~~~~l~~L 331 (557)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 4567777765
No 349
>PRK10867 signal recognition particle protein; Provisional
Probab=95.60 E-value=0.1 Score=54.04 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.+.+|.++|++|+||||++..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887665
No 350
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.60 E-value=0.023 Score=56.21 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4555564 44456789999999999999999999888766666677775
No 351
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.042 Score=49.63 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988754
No 352
>PHA02244 ATPase-like protein
Probab=95.58 E-value=0.011 Score=59.02 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..|+|....+......+..--.....|.|+|++|+|||+||+++++...
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 5677776665443332221001223578899999999999999998754
No 353
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.58 E-value=0.11 Score=50.09 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=58.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHH---HHHHHHHhcCCccccCHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQ---LKLLSKLLQDNNVILNIALSFRRL 273 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~---~~ll~~~~~~~~~~~~~~~l~~~l 273 (557)
....|.|+|+.|+||||-.....+.+-.++..++.-. ....+.+. +.++.+-.-..+...=...++..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI--------EDPIE~vh~skkslI~QREvG~dT~sF~~aLraAL 195 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI--------EDPIEYVHESKKSLINQREVGRDTLSFANALRAAL 195 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe--------cCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHh
Confidence 4568999999999999888888887777766655432 22222221 122211111101111167788899
Q ss_pred ccCceEEEEcCCCCHHHHHHHhcc
Q 008685 274 SRRKVLIVFDDVSCFNQIESLIGS 297 (557)
Q Consensus 274 ~~k~~LlVlDdv~~~~~~~~l~~~ 297 (557)
+.-|=+|++-.+.|.+.+..-+..
T Consensus 196 ReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 196 REDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hcCCCEEEEeccccHHHHHHHHHH
Confidence 999999999999988887765543
No 354
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.56 E-value=0.017 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998886
No 355
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.14 Score=50.97 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+.|.++..+-|.+...- ....-+-|.++|++|.|||-||++++..-.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 5688888877777765421 123356789999999999999999998754
No 356
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.51 E-value=0.0089 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|.|.|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999865
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=95.49 E-value=0.024 Score=53.64 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=30.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
....++.|.|.+|+|||+|+.+++.....+...++++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999999988655555555654
No 358
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.49 E-value=0.091 Score=50.59 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+.++|.|.+|+|||+|+..+++...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 356789999999999999999887753
No 359
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.48 E-value=0.036 Score=54.95 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCccccchhHHHHHHhhccc----CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE----WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~----~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..|+|.++.+++|.+.+... ....+++.+.||.|.|||||+..+.+-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 68999999999999988652 2347899999999999999999998876554
No 360
>PRK13947 shikimate kinase; Provisional
Probab=95.47 E-value=0.011 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
-|.|.|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.021 Score=50.62 Aligned_cols=117 Identities=20% Similarity=0.160 Sum_probs=58.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
..+++|.|..|.|||||++.++..+. .....+++.... .. ..........+ ..+..-...+...-.+...+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~--~~~~~~~~~~i-~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA--KLPLEELRRRI-GYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc--cCCHHHHHhce-EEEeeCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999987643 234445543211 10 00011110000 000000000111233444555667
Q ss_pred eEEEEcCCC---CHHHHHHHhccCCCC-CCceEEEEEeCChhhhhc
Q 008685 278 VLIVFDDVS---CFNQIESLIGSLDWF-TPRSTIIITTRDKQVLRN 319 (557)
Q Consensus 278 ~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~IiiTsR~~~~~~~ 319 (557)
-++++|+.. |......+...+... ..+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 899999983 333333332222111 224668888887765544
No 362
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.47 E-value=0.071 Score=55.28 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=50.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcC--------Ccccc--C-
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQD--------NNVIL--N- 265 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~~--~- 265 (557)
..+.++|.|.+|+|||||+..++.....+...++.+..+++. ......+...+...-... .+... .
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 456799999999999999999988876554444444434332 223333343333221100 00000 0
Q ss_pred -----HHHHHHHH---ccCceEEEEcCCCC
Q 008685 266 -----IALSFRRL---SRRKVLIVFDDVSC 287 (557)
Q Consensus 266 -----~~~l~~~l---~~k~~LlVlDdv~~ 287 (557)
.-.+.+++ +++++||++|++..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 22334444 67899999999943
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.47 E-value=0.07 Score=57.23 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccc
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVI 263 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 263 (557)
+..|.++|..+-....++.|.|.+|+|||+|+.+++......-..++|+. ..............++.+...-
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis--------~e~~~~~i~~~~~~~g~~~~~~ 330 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA--------FEESRAQLIRNARSWGIDLEKM 330 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE--------ecCCHHHHHHHHHHcCCChHHH
Q ss_pred cC-------------------HHHHHHHHcc-CceEEEEcCC------CCHHHHHHHhccCCCCC--CceEEEEEe
Q 008685 264 LN-------------------IALSFRRLSR-RKVLIVFDDV------SCFNQIESLIGSLDWFT--PRSTIIITT 311 (557)
Q Consensus 264 ~~-------------------~~~l~~~l~~-k~~LlVlDdv------~~~~~~~~l~~~l~~~~--~~~~IiiTs 311 (557)
.. ...+.+.+.. +.-++|+|.+ .+.......+..+.... .|..+|+|.
T Consensus 331 ~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~t~l~t~ 406 (509)
T PRK09302 331 EEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFTN 406 (509)
T ss_pred hhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEEe
No 364
>PRK10436 hypothetical protein; Provisional
Probab=95.46 E-value=0.027 Score=58.90 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred cccch-hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH
Q 008685 178 VGVES-RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL 256 (557)
Q Consensus 178 vGR~~-~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 256 (557)
.|... .++.+.+++. ....+|.|+|+.|.||||....+...+...-..++-+.+.-+... .+. .+.
T Consensus 200 LG~~~~~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--~gi--------~Q~ 266 (462)
T PRK10436 200 LGMTPAQLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--AGI--------NQT 266 (462)
T ss_pred cCcCHHHHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--CCc--------ceE
Confidence 34443 3445555554 235689999999999999988777765443222222221111110 000 010
Q ss_pred hcCCccccC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhc
Q 008685 257 LQDNNVILN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIG 296 (557)
Q Consensus 257 ~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~ 296 (557)
.-......+ ...++..|+..+=.|++.++.+.+.....+.
T Consensus 267 ~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~ 307 (462)
T PRK10436 267 QIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIK 307 (462)
T ss_pred eeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 001011112 6777888899999999999998887665443
No 365
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.45 E-value=0.012 Score=53.96 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=50.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHh-cCCc----cccC-HHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLL-QDNN----VILN-IALSF 270 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~----~~~~-~~~l~ 270 (557)
....++|.|+.|.|||||++.+...+... ...+.+....+... .. . ... .+. .... ...+ .+.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~-~~--~----~~~-~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQL-PH--P----NWV-RLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCC-CC--C----CEE-EEEEecCCCCCCCccCHHHHHH
Confidence 34689999999999999999998876432 22333322111110 00 0 000 000 0000 0112 45556
Q ss_pred HHHccCceEEEEcCCCCHHHHHHH
Q 008685 271 RRLSRRKVLIVFDDVSCFNQIESL 294 (557)
Q Consensus 271 ~~l~~k~~LlVlDdv~~~~~~~~l 294 (557)
..++..+=.++++.+.+.+.+..+
T Consensus 95 ~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HHhccCCCEEEEEccCcHHHHHHH
Confidence 677778889999999888765543
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.45 E-value=0.15 Score=48.68 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
....++.|.|.+|+|||+++.+++.....+ -..++|+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 456799999999999999999998886554 45556654
No 367
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.44 E-value=0.013 Score=65.63 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=56.5
Q ss_pred cCceEEEEcCCC---CHHHHH----HHhccCCCCCCceEEEEEeCChhhhhccccc---eEEEcccCCHHHHHHHHHhcc
Q 008685 275 RRKVLIVFDDVS---CFNQIE----SLIGSLDWFTPRSTIIITTRDKQVLRNWGVK---KIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 275 ~k~~LlVlDdv~---~~~~~~----~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~---~~~~l~~L~~~ea~~L~~~~~ 344 (557)
..+-|+++|... ++..-. .++..+. ..|+.+|+||....+....... ....+. ++. +......+..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~~~Ykl~ 481 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLRPTYRLL 481 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCcEEEEEe
Confidence 467899999993 333222 2333332 3477899999987664432211 111111 111 1111111111
Q ss_pred ccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHhhh
Q 008685 345 FKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINKLK 395 (557)
Q Consensus 345 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~l~ 395 (557)
.+.+. ...+-.|++.+ |+|-.+..-|..+..........++..+.
T Consensus 482 --~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 482 --IGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred --eCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 12222 34466777766 78877777777665544445555555543
No 368
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.36 Score=48.51 Aligned_cols=58 Identities=21% Similarity=0.094 Sum_probs=37.7
Q ss_pred cceEEEcccCCHHHHHHHHHhccccCCCC-CCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 322 VKKIYEMEALEYDHALELFSRHAFKQIHP-AVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 322 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
...++++++.+.+|+.++...+....-.. ....++..+++.-..+|||--++.++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34578999999999998887655321110 00014556788888899996666666544
No 369
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.43 E-value=0.065 Score=63.65 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++-|.++|++|+|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346679999999999999999999874
No 370
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.43 E-value=0.041 Score=56.86 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccc
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVI 263 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 263 (557)
.+.+.+++. ....++.++|+.|+||||..-.+...+......++-+.+.-+... .++. ++.-.....
T Consensus 247 ~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~--~gI~--------Q~qVN~k~g 313 (500)
T COG2804 247 LARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL--PGIN--------QVQVNPKIG 313 (500)
T ss_pred HHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec--CCcc--------eeecccccC
Confidence 344555554 356799999999999999999998887666555544432221111 1111 111111111
Q ss_pred cC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeC
Q 008685 264 LN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 264 ~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
.+ ...++..|++.|=+|++..+.|.+..+..... .-.++.++||=
T Consensus 314 ltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqA----alTGHLVlSTl 359 (500)
T COG2804 314 LTFARALRAILRQDPDVIMVGEIRDLETAEIAVQA----ALTGHLVLSTL 359 (500)
T ss_pred CCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHH----HhcCCeEeeec
Confidence 12 67788889999999999999988876655544 22445666553
No 371
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.43 E-value=0.028 Score=55.72 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|..+|. .+-...+++-|+|++|+||||||.+++.........++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4555564 44455789999999999999999999988766666777776
No 372
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.41 E-value=0.047 Score=56.77 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=29.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVR 236 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 236 (557)
..+.++|.|.+|+|||||+..+++....+...++.+..++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liG 181 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVG 181 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 4568999999999999999999988765444443333333
No 373
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.40 E-value=0.0099 Score=54.42 Aligned_cols=21 Identities=24% Similarity=0.061 Sum_probs=18.8
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~ 220 (557)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999983
No 374
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.36 E-value=0.019 Score=54.06 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG 228 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 228 (557)
..+.+|.++||+|.||||+.+.+...+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 346688999999999999999999988776554
No 375
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.36 E-value=0.02 Score=54.33 Aligned_cols=47 Identities=26% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 187 IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 187 l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
|.++|..+-....++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 445554444456799999999999999999998776555 56677765
No 376
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.36 E-value=0.011 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998873
No 377
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.33 E-value=0.02 Score=58.25 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHhhcc---------c---CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGV---------E---WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---------~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+...+.+..++.. + ....+.+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 6688988888888766632 0 0114678999999999999999999986543
No 378
>PRK14528 adenylate kinase; Provisional
Probab=95.33 E-value=0.052 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 379
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.32 E-value=0.04 Score=55.91 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=53.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC-c-eEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE-G-SCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
..+.|+|+.|+||||++..+.+.+....+ . ++-+.+..+... .+...+....-.++.. +...-...++..|+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~~~q~evg~--~~~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLPPAQSQIGR--DVDSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeecccccccCC--CccCHHHHHHHhhccC
Confidence 47889999999999999999888754332 2 333322211111 0000000000001110 0011146777888889
Q ss_pred ceEEEEcCCCCHHHHHHHhc
Q 008685 277 KVLIVFDDVSCFNQIESLIG 296 (557)
Q Consensus 277 ~~LlVlDdv~~~~~~~~l~~ 296 (557)
+=.|+++.+.+.+..+..+.
T Consensus 226 PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 226 PKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred CCEEeeCCCCCHHHHHHHHH
Confidence 99999999999888775443
No 380
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.32 E-value=0.027 Score=48.79 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=26.7
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999998754 44444444
No 381
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.31 E-value=0.087 Score=54.48 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=30.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVRE 237 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 237 (557)
..+.++|.|.+|+|||+|+..++.....+...++.+..+++
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE 182 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 45679999999999999999999877655444444444443
No 382
>PRK05439 pantothenate kinase; Provisional
Probab=95.31 E-value=0.024 Score=55.88 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45779999999999999999999887654
No 383
>PRK15453 phosphoribulokinase; Provisional
Probab=95.30 E-value=0.026 Score=54.39 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....+|+|.|.+|+||||+|+.+++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999987654
No 384
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.30 E-value=0.066 Score=49.62 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998875
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=95.29 E-value=0.017 Score=44.08 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=18.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+++.|.|++|.|||+++......+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999996665555443
No 386
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.28 E-value=0.062 Score=50.17 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=37.4
Q ss_pred HHHHHHHHccCceEEEEcCC----CC--HHHHHHHhccCCCCCCceEEEEEeCChhhhhccccceEEEc
Q 008685 266 IALSFRRLSRRKVLIVFDDV----SC--FNQIESLIGSLDWFTPRSTIIITTRDKQVLRNWGVKKIYEM 328 (557)
Q Consensus 266 ~~~l~~~l~~k~~LlVlDdv----~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~~~~~l 328 (557)
.-.+.+.+-..|-+|+.|+- +. ...+-.++..+. ...|..||+.|.++.++..+. +++.+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d--r~i~l 215 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD--RVIEL 215 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC--EEEEE
Confidence 45666777788899999976 22 223334433322 134678999999998877653 44444
No 387
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.28 E-value=1.2 Score=43.17 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=24.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH--hhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK--ISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~ 232 (557)
+-+..|+|+.|+|||+|.+.+..- +..--+.++|+
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFI 123 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFI 123 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEE
Confidence 445678999999999999988753 22223445555
No 388
>PRK09354 recA recombinase A; Provisional
Probab=95.28 E-value=0.031 Score=55.83 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|..+|. .+-...+++-|+|++|+||||||.+++......-..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4556665 44456789999999999999999999988776667777876
No 389
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.073 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||++.++-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 390
>PRK06217 hypothetical protein; Validated
Probab=95.27 E-value=0.013 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|.|.|.+|+||||||+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998853
No 391
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.25 E-value=0.086 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.222 Sum_probs=23.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++.|.|++|+|||+++.+++..+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 358899999999999999999988654
No 392
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.25 E-value=0.013 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.578 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|.|.|++|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.24 E-value=0.013 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 394
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.23 E-value=0.016 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.9
Q ss_pred cCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 194 EWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 194 ~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.....+.+.|+|++|+|||||+..+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456789999999999999999998754
No 395
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.23 E-value=0.073 Score=49.07 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 396
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.088 Score=47.20 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHccCceEEEEcCC----CCHHHHH--HHhccCCCCCCceEEEEEeCChhhhhcc
Q 008685 267 ALSFRRLSRRKVLIVFDDV----SCFNQIE--SLIGSLDWFTPRSTIIITTRDKQVLRNW 320 (557)
Q Consensus 267 ~~l~~~l~~k~~LlVlDdv----~~~~~~~--~l~~~l~~~~~~~~IiiTsR~~~~~~~~ 320 (557)
-.+.+.+-+++-+|+-|.- +.+..|+ .++..++ ..|..||++|.+..+...+
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 4455666788999999965 3333333 2333333 5789999999999876665
No 397
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.013 Score=51.49 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.8
Q ss_pred EEEEeccCCCchhHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~ 219 (557)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 398
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.21 E-value=0.042 Score=54.78 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=30.4
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.|.+.+.....+..+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443323467899999999999999999999887654
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.21 E-value=0.031 Score=55.49 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCccccchhHHH---HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEE
Q 008685 175 NQLVGVESRVEE---IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCF 231 (557)
Q Consensus 175 ~~~vGR~~~l~~---l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 231 (557)
..+||.....+. +.++...+.-..+.+.|.|++|.|||+||..+++.+..+.+....
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 679998876665 345555443346899999999999999999999999877665443
No 400
>PRK15115 response regulator GlrR; Provisional
Probab=95.21 E-value=0.39 Score=50.60 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|....+.++.+....-......+.|.|.+|+|||++|+.+.+...
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcC
Confidence 4578888777776655433223344678999999999999998887643
No 401
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.16 Score=56.66 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCccccchhHHHHHHhhccc---C---CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE---W---EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~---~---~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 248 (557)
..++|-++.+..+.+.+... . .....+.+.|+.|+|||.||++++..+....+..+-+. ....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 34677777777777766431 1 13567889999999999999999998866555544443 1111
Q ss_pred HHHHHHHHhcCCc-ccc--CHHHHHHHHccCce-EEEEcCCCC
Q 008685 249 QLKLLSKLLQDNN-VIL--NIALSFRRLSRRKV-LIVFDDVSC 287 (557)
Q Consensus 249 ~~~ll~~~~~~~~-~~~--~~~~l~~~l~~k~~-LlVlDdv~~ 287 (557)
.. ..++.+... -.. ....+.+.++.+++ +|.||||+.
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 11 222222211 111 26678888888885 777899953
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.20 E-value=0.012 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=21.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.++|+|+.|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999875433
No 403
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.19 E-value=0.016 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 404
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.17 E-value=0.027 Score=60.67 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
+..+.|.+..+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 55778888888888877665556779999999999999999999998764
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.16 E-value=0.014 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999988753
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.15 E-value=0.013 Score=54.26 Aligned_cols=23 Identities=48% Similarity=0.738 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 407
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.15 E-value=0.11 Score=50.50 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCC---cccc--C---HHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDN---NVIL--N---IALS 269 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~---~~~~--~---~~~l 269 (557)
..-++|.|++|.|||||.+.++..+... ...+++.... ... ......+... ...+.... ..+. + ...+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~-~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGI-VDERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eec-chhHHHHHHH-hcccccccccccccccccchHHHHH
Confidence 4678999999999999999999876533 3334432111 110 0111122111 11111100 0000 0 2223
Q ss_pred HHHHc-cCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhh
Q 008685 270 FRRLS-RRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 270 ~~~l~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~ 316 (557)
...+. ..+=++++|.+...+.+..+...+. .|..+|+||.+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 33333 5788999999988777777766543 47779999987654
No 408
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.13 E-value=0.49 Score=49.43 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=45.7
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh-ccCCceEEEEeccccccCCCChHHHHHHHHHH
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS-SDFEGSCFLQNVREESVRPGGLACLQLKLLSK 255 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 255 (557)
..|...-+..|.+++. +-.+..++.|.|.+|+|||++|..++.... .+-..++|++ . ......+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l------Em~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L------EMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C------CCCHHHHHHHHHHH
Confidence 3444555555655554 334567899999999999999999997764 3333455543 1 34455555555544
Q ss_pred H
Q 008685 256 L 256 (557)
Q Consensus 256 ~ 256 (557)
.
T Consensus 246 ~ 246 (421)
T TIGR03600 246 K 246 (421)
T ss_pred H
Confidence 3
No 409
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.12 E-value=0.027 Score=49.59 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=18.5
Q ss_pred EeccCCCchhHHHHHHHHHh
Q 008685 203 IWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 203 I~G~~GiGKTtLa~~~~~~~ 222 (557)
|.|+||+||||+|..++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999874
No 410
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.11 E-value=0.051 Score=61.69 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccC----CceEEEEec--cccccCCCChHHHHHHHHHHHhcCCccccCHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDF----EGSCFLQNV--REESVRPGGLACLQLKLLSKLLQDNNVILNIALSFR 271 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~ 271 (557)
..-+.|+|.+|.||||+...++-...... +..+++... .......... .+..-+...+..............+
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~e 300 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQLIEAHQE 300 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcchhhHHHHH
Confidence 34789999999999999999987644332 122222211 1000000000 2222222222222222112333357
Q ss_pred HHccCceEEEEcCCCCHHH---------HHHHhccCCCCCCceEEEEEeCChhhhhccccceEEEcccCCHHHHH
Q 008685 272 RLSRRKVLIVFDDVSCFNQ---------IESLIGSLDWFTPRSTIIITTRDKQVLRNWGVKKIYEMEALEYDHAL 337 (557)
Q Consensus 272 ~l~~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~~~~~~~~l~~L~~~ea~ 337 (557)
.++..++++++|.++.... +..+.+. -+.+.+|+|+|....-.........++..+.++.-.
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 8889999999999865431 2233333 358899999987754333222344555555555433
No 411
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.09 E-value=0.02 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|.|.|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.08 E-value=0.058 Score=53.30 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=51.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccC--CceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDF--EGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
+.+.|.|+.|+||||++..+...+.... ..++-+....+......+.. .+........-.+.++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998875432 22333322222111000000 0000000001156677788888
Q ss_pred ceEEEEcCCCCHHHHHHH
Q 008685 277 KVLIVFDDVSCFNQIESL 294 (557)
Q Consensus 277 ~~LlVlDdv~~~~~~~~l 294 (557)
+=.+|+..+.+.+.+..+
T Consensus 205 pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCEEEEeccCCHHHHHHH
Confidence 889999999888766543
No 413
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.11 Score=49.41 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=34.6
Q ss_pred HHHHHHHHccCceEEEEcCC----C--CHHHHHHHhccCCCCCCceEEEEEeCChhhhh
Q 008685 266 IALSFRRLSRRKVLIVFDDV----S--CFNQIESLIGSLDWFTPRSTIIITTRDKQVLR 318 (557)
Q Consensus 266 ~~~l~~~l~~k~~LlVlDdv----~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~ 318 (557)
...+.+.|..++=|++||.- + ....+-.++..+. ..|..||++|.+-....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 45666778889999999976 2 2234555555554 33888999998875433
No 414
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.04 E-value=0.036 Score=46.45 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCccccc----hhHHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVE----SRVEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~----~~l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|-. ..++.|.+.+.. .++.+-+++.+|.+|+|||.+++.+++.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 3455655 444455555544 345577889999999999999999998853
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.04 E-value=0.015 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.080 Sum_probs=20.6
Q ss_pred EEEEEeccCCCchhHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 416
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.02 E-value=0.024 Score=51.74 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+++.|+|+.|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999887777544443
No 417
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.02 E-value=0.018 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEeccCCCchhHHHHHHHHHh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999875
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.01 E-value=0.039 Score=49.46 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...+++|+|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46689999999999999999999887653
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.018 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999983
No 420
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.019 Score=49.01 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
+-|.|+|.||+|||||+.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 45889999999999999999965
No 421
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.00 E-value=0.082 Score=56.41 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..++|....++++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999988887543334457899999999999999999886
No 422
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.00 E-value=0.025 Score=56.92 Aligned_cols=49 Identities=27% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
..++|+++.+..+...+.. .+.+.+.|++|+|||+||+.++..+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4589988888887666643 246889999999999999999998774443
No 423
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.00 E-value=0.09 Score=56.90 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=58.3
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcc
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNV 262 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 262 (557)
.++.+.+++. ....+|.|+|+.|+||||+...+.+.+...-..++-+.+.-+... .+. .++.-....
T Consensus 304 ~~~~l~~~~~---~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~--~~~--------~q~~v~~~~ 370 (564)
T TIGR02538 304 QKALFLEAIH---KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL--PGI--------NQVNVNPKI 370 (564)
T ss_pred HHHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC--CCc--------eEEEecccc
Confidence 3455555554 234689999999999999988877766432111222221111110 010 011101111
Q ss_pred ccC-HHHHHHHHccCceEEEEcCCCCHHHHHHHhc
Q 008685 263 ILN-IALSFRRLSRRKVLIVFDDVSCFNQIESLIG 296 (557)
Q Consensus 263 ~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~ 296 (557)
..+ ...++..|+..+=.|++.++.+.+.....+.
T Consensus 371 g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~ 405 (564)
T TIGR02538 371 GLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIK 405 (564)
T ss_pred CCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHH
Confidence 112 6677888899999999999999887665443
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.38 Score=48.56 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=24.2
Q ss_pred hhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 190 LLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 190 ~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.|..+-+--..|+|+|+.|+|||||.+.+.-.
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcC
Confidence 33333334567999999999999999988755
No 425
>PRK13949 shikimate kinase; Provisional
Probab=94.98 E-value=0.02 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|.|.|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 426
>PRK14529 adenylate kinase; Provisional
Probab=94.97 E-value=0.11 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEeccCCCchhHHHHHHHHHhh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
|.|.|++|+||||+|+.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998764
No 427
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.94 E-value=0.049 Score=53.41 Aligned_cols=55 Identities=27% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCccccchhHHH---HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCce
Q 008685 175 NQLVGVESRVEE---IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGS 229 (557)
Q Consensus 175 ~~~vGR~~~l~~---l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 229 (557)
+.|||..+..+. +.++..++.-..+.|.|.|++|.|||.||..+++.+...-+++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 789998765554 4555655545578999999999999999999999987654433
No 428
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.93 E-value=0.17 Score=50.85 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS------DFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 233 (557)
..|..+|..+-....++-|+|++|+|||+|+..++-.... .-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 4555666554455788999999999999999988854321 112567776
No 429
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.92 E-value=0.031 Score=57.67 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHhhcc-------c-------CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGV-------E-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-------~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|.+...+.|...+.. . ......+.++|++|+|||+||+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5578888888877544311 0 012356899999999999999999987643
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.91 E-value=0.048 Score=51.61 Aligned_cols=36 Identities=33% Similarity=0.311 Sum_probs=24.7
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+.+...+.. ..+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 44455555542 2278999999999998888887776
No 431
>PRK13948 shikimate kinase; Provisional
Probab=94.91 E-value=0.022 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+.|.+.|+.|+||||+++.+++.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998863
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.89 E-value=0.42 Score=46.29 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=27.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...++++|.+|+||||++..++..+..+-..+.++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999988765443334444
No 433
>PTZ00035 Rad51 protein; Provisional
Probab=94.89 E-value=0.18 Score=50.71 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..|..+|..+-....++.|+|++|+|||+|+..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 45666666555567899999999999999999887654
No 434
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.89 E-value=0.07 Score=55.23 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHccCceEEEEcCCC---CHHHHHHHhccCCCCCCceEEEEEeCChhhhhcc
Q 008685 268 LSFRRLSRRKVLIVFDDVS---CFNQIESLIGSLDWFTPRSTIIITTRDKQVLRNW 320 (557)
Q Consensus 268 ~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~ 320 (557)
.+.+.|=.+|-||.||+-. |.+.+..+-..|..+..+ .++|++|..+.++.+
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH
Confidence 3344445689999999983 444444443444333333 689999999776654
No 435
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.88 E-value=0.051 Score=51.42 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|.+.|..+-....++.|.|.+|+|||++|.+++.....+-..++++.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345555444345679999999999999999999987655545566654
No 436
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.86 E-value=0.14 Score=49.28 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=24.8
Q ss_pred CcEEEEEeccCCCchhHHH-HHHHHHhhccCCceEEEEecc
Q 008685 197 DVYTLGIWGIGGIGKTTIA-KAIFEKISSDFEGSCFLQNVR 236 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~ 236 (557)
..+.++|.|.+|+|||+|| ..+++.. +-+..+.+..+.
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iG 106 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIG 106 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecc
Confidence 3567899999999999996 4455432 234443444343
No 437
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.86 E-value=0.017 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEeccCCCchhHHHHHHHHHh
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
|.|.|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 438
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.85 E-value=0.074 Score=48.54 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=24.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...++.|.|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988653
No 439
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.82 E-value=0.062 Score=53.29 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=29.5
Q ss_pred HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 187 IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 187 l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+.+.+........+|+|.|++|+|||||+..+.......
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 333343333467899999999999999999999876554
No 440
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.81 E-value=0.095 Score=53.92 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....++|.|..|+|||||+..++..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC
Confidence 3567999999999999999888864
No 441
>PRK14530 adenylate kinase; Provisional
Probab=94.80 E-value=0.023 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|.|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 442
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.80 E-value=0.049 Score=50.46 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcccc-------CHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVIL-------NIAL 268 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~-------~~~~ 268 (557)
..+.++.|.|.+|.||||++..+...+. ....+.+. .............+.. . ........ -.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~-~~~~~~~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----A-DPDEASELTQKEASRLAEK 84 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----H-HCCCTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----h-hhhhhHHHHHHHHHHHHHH
Confidence 4678899999999999999999988654 34444443 3222221222222222 1 11111000 0344
Q ss_pred HHHHHccCceEEEEcCCC-CHHHHHHHhccCC
Q 008685 269 SFRRLSRRKVLIVFDDVS-CFNQIESLIGSLD 299 (557)
Q Consensus 269 l~~~l~~k~~LlVlDdv~-~~~~~~~l~~~l~ 299 (557)
+.+..-.++.=+|+|..- +.+....+...+.
T Consensus 85 ~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k 116 (199)
T PF06414_consen 85 LIEYAIENRYNIIFEGTLSNPSKLRKLIREAK 116 (199)
T ss_dssp HHHHHHHCT--EEEE--TTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCChhHHHHHHHHHH
Confidence 445555677788889874 3344443444433
No 443
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.029 Score=50.09 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 444
>PRK13946 shikimate kinase; Provisional
Probab=94.80 E-value=0.023 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|.+.|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 445
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.78 E-value=0.038 Score=49.73 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=31.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...|.|-|++|+|||+|..+.+..++++|...+--
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 47899999999999999999999999988866654
No 446
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.77 E-value=0.024 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999864
No 447
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.77 E-value=0.054 Score=53.91 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=25.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+..+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887655
No 448
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.76 E-value=0.35 Score=41.93 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHHHhhceEEEEecCCccCchhhHHHHHHHHh
Q 008685 45 ESLMNAIEASAISLIIFSEGYASSRWCLDELLKILD 80 (557)
Q Consensus 45 ~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~ 80 (557)
.++.++|+.++..+.|++...-.+.+.. ++.+.+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~ 37 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVK 37 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHH
Confidence 5678999999999999987655554422 4555444
No 449
>PRK13768 GTPase; Provisional
Probab=94.75 E-value=0.041 Score=53.02 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=27.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.++.|.|++|+||||++..++..+...-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5789999999999999999998876654444444
No 450
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.75 E-value=0.092 Score=56.03 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|....++++.+.+..-......|.|.|.+|+||+.+|+.+.+.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 458999999999888775433344678999999999999999998754
No 451
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.025 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=23.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 452
>PRK14527 adenylate kinase; Provisional
Probab=94.74 E-value=0.026 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|.|.|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.72 E-value=0.051 Score=54.06 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=58.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccC-HHHHHHHHcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN-IALSFRRLSR 275 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-~~~l~~~l~~ 275 (557)
....++|.|+.|.|||||++.+...+.... ..+.+....+.......... +...-........+ .+.+...++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EEecCCCCCcCccCHHHHHHHHhcC
Confidence 346899999999999999999987754332 23333322222110000000 00000000011122 4566667788
Q ss_pred CceEEEEcCCCCHHHHHHHhccCCCCCCceE-EEEEeCCh
Q 008685 276 RKVLIVFDDVSCFNQIESLIGSLDWFTPRST-IIITTRDK 314 (557)
Q Consensus 276 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~-IiiTsR~~ 314 (557)
.+=.+++|.+.+.+.+.. +.... .|.. ++.|+...
T Consensus 218 ~pd~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 218 RPDRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHAG 253 (308)
T ss_pred CCCeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCC
Confidence 888999999988766543 33322 2222 45555544
No 454
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.70 E-value=0.057 Score=52.47 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG 228 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 228 (557)
.+..++.|.|.+|.|||||+..+...+......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 467899999999999999999999987666543
No 455
>PRK08506 replicative DNA helicase; Provisional
Probab=94.70 E-value=0.32 Score=51.47 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=47.1
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL 256 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 256 (557)
..|-..-+..|.+++ .+-.+..++.|-|.+|+|||++|..++.....+-..+++++ . ......+...++...
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------l-EMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------L-EMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------C-cCCHHHHHHHHHHHh
Confidence 445555555666654 33345678999999999999999999988754434455543 1 345566666665543
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.70 E-value=0.021 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
++++|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.66 E-value=0.32 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
++.++.++|++|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999998865
No 458
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.65 E-value=0.027 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=94.65 E-value=0.029 Score=51.82 Aligned_cols=26 Identities=42% Similarity=0.473 Sum_probs=23.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 460
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.65 E-value=0.15 Score=52.77 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+.++|.|.+|+|||+|+..++....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~ 163 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV 163 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 456799999999999999999988765
No 461
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.64 E-value=0.042 Score=59.72 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEe
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQN 234 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 234 (557)
..++|.+..++.|...+..+ +.+.|+|++|+||||+|+.+++.+... +....|..+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 67999999999888877543 468999999999999999999886433 466777765
No 462
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.62 E-value=0.025 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=17.9
Q ss_pred EEEeccCCCchhHHHHHHHHH
Q 008685 201 LGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~ 221 (557)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.60 E-value=0.14 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.....++|+|+.|.|||||++.+...
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998754
No 464
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.59 E-value=0.14 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....++|+|+.|.|||||++.+....
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999988765
No 465
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.58 E-value=0.033 Score=53.04 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=23.1
Q ss_pred EeccCCCchhHHHHHHHHHhhccCCceEEEEecccc
Q 008685 203 IWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE 238 (557)
Q Consensus 203 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 238 (557)
|.||+|+||||+++.+.+.+..... .+.+.|....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~-~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGR-DVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S--EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CceEEEcchH
Confidence 6899999999999999998765533 3344444433
No 466
>PLN02200 adenylate kinase family protein
Probab=94.58 E-value=0.032 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.+|.|.|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 467
>PLN02674 adenylate kinase
Probab=94.57 E-value=0.13 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|.|.|++|+||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999998864
No 468
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.57 E-value=0.19 Score=50.79 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=24.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh--ccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS--SDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 232 (557)
.+++.++|+.|+||||-...++.+.. ..-..+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI 239 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII 239 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE
Confidence 78999999999999976666665543 333344444
No 469
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.55 E-value=0.041 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.4
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+++|+|+.|+|||||+..+...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988765
No 470
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.54 E-value=0.29 Score=47.42 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-CceEEEEeccccccCCCChHHHHHHHHHHHhc
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-EGSCFLQNVREESVRPGGLACLQLKLLSKLLQ 258 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 258 (557)
.|.+.+. +-.+..++.|-|.+|+|||++|.+++..+.... ..+.|++ . ..+...+...++.....
T Consensus 8 ~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------l-Em~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 8 ALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------L-EMSEEELAARLLARLSG 73 (259)
T ss_dssp HHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------S-SS-HHHHHHHHHHHHHT
T ss_pred HHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------C-CCCHHHHHHHHHHHhhc
Confidence 4444443 223456899999999999999999999876653 5566654 1 34556666666665543
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.54 E-value=0.073 Score=49.33 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=26.6
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhccCCceEEEEec
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNV 235 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 235 (557)
.|+|+|-||+||||+|..++.++..+-...+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777765554344444433
No 472
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.42 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++++|+.|+||||++..++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888763
No 473
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.53 E-value=0.11 Score=51.66 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=49.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC-ce-EEEEeccccccCCCChHHHHHHHHHHHhcCCccccC-HHHHHHHHcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE-GS-CFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN-IALSFRRLSR 275 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-~~~l~~~l~~ 275 (557)
.-+.|.|..|.||||++..+...+....+ .. +-+....+.......... + ......+ .+.++..|+.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~--------l--~~~~~~~~~~lv~~aLR~ 214 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA--------L--HTSDTVDMARLLKSTMRL 214 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE--------e--ccCCCcCHHHHHHHHhCC
Confidence 35789999999999999999987643222 22 222211111100000000 0 0011122 5666778888
Q ss_pred CceEEEEcCCCCHHHHHHH
Q 008685 276 RKVLIVFDDVSCFNQIESL 294 (557)
Q Consensus 276 k~~LlVlDdv~~~~~~~~l 294 (557)
.+=.+|+..+.+.+.+..+
T Consensus 215 ~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 215 RPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred CCCEEEEeecCCHHHHHHH
Confidence 8999999999888766543
No 474
>PHA02774 E1; Provisional
Probab=94.52 E-value=0.13 Score=54.44 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=31.2
Q ss_pred hhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 182 SRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 182 ~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.-+..|..+|.. ..+...+.|+|++|.|||.+|..+.+-+.
T Consensus 419 ~fl~~lk~~l~~-~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKG-IPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445566666643 23456899999999999999999998763
No 475
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.52 E-value=0.19 Score=56.32 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+++.|.|.+|.||||++..+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 588999999999999999998776654
No 476
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.52 E-value=0.2 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.008 Sum_probs=21.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..+++.|.|+.|.||||+.+.++.-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988744
No 477
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.52 E-value=0.49 Score=50.12 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|......++...+..-......+.|.|.+|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588888877777766654333345678999999999999998887643
No 478
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.52 E-value=0.29 Score=47.08 Aligned_cols=122 Identities=20% Similarity=0.329 Sum_probs=69.6
Q ss_pred CCccccchhHHHHHHhhc-----ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC-ceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLG-----VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-GSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~-----~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 248 (557)
+.|+....+.+-|..-+. ..-.+..-|++.|-+|+|||.|..++.+.+..... ..+|. .+.+..... ..+
T Consensus 163 P~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~-GvGERTREG---NDL 238 (521)
T KOG1350|consen 163 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFA-GVGERTREG---NDL 238 (521)
T ss_pred hhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEee-ccccccccc---cHH
Confidence 567777776666654321 12234567999999999999999999998765433 44444 344433312 222
Q ss_pred HHHHHHH----HhcC--------------Ccccc-------CHHHHHHHHccCceEEEEcCCCCH----HHHHHHhccCC
Q 008685 249 QLKLLSK----LLQD--------------NNVIL-------NIALSFRRLSRRKVLIVFDDVSCF----NQIESLIGSLD 299 (557)
Q Consensus 249 ~~~ll~~----~~~~--------------~~~~~-------~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~ 299 (557)
..++.+. +... ..... ......+-..++.+||.+||+..- ..+..++..++
T Consensus 239 Y~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiP 318 (521)
T KOG1350|consen 239 YHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 318 (521)
T ss_pred HHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCc
Confidence 2222221 1111 00000 134444555678999999999432 45667776655
Q ss_pred C
Q 008685 300 W 300 (557)
Q Consensus 300 ~ 300 (557)
+
T Consensus 319 S 319 (521)
T KOG1350|consen 319 S 319 (521)
T ss_pred c
Confidence 3
No 479
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.51 E-value=0.044 Score=46.02 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+..+|.+.|.=|.||||+++.++..+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 355799999999999999999999875
No 480
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.49 E-value=0.031 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|.|.|+.|.||||+++.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999999875
No 481
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.49 E-value=0.072 Score=58.02 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=43.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEec
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQNV 235 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 235 (557)
..++|.+..++.+...+..+ +-+.++|++|+|||++|+.+++.+... |...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 67899999888888877643 356699999999999999999987654 3444555433
No 482
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.47 E-value=0.047 Score=53.07 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=29.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++++|.|.+|+|||||+..+...+..+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999998877 455554
No 483
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.47 E-value=0.058 Score=52.77 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988876654
No 484
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.44 E-value=0.052 Score=47.90 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=29.6
Q ss_pred chhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 181 ESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 181 ~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|...+. + +++++.|..|+|||||...+...
T Consensus 23 ~~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 356777888884 3 68999999999999999988864
No 485
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.44 E-value=0.023 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.022 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
+.+++.|+|+.|.||||+.+.+..-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4678999999999999999987743
No 486
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.43 E-value=0.036 Score=51.66 Aligned_cols=26 Identities=42% Similarity=0.501 Sum_probs=22.4
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....+++|+|++|+|||||++.++--
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 34568999999999999999999854
No 487
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.42 E-value=0.24 Score=48.97 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|...|. .+-+..+++-|+|+.|+||||||..+...........+|+.
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 34556664 33344679999999999999999999988776667777876
No 488
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.41 E-value=0.091 Score=55.38 Aligned_cols=41 Identities=27% Similarity=0.123 Sum_probs=30.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC-CceEEEEeccc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF-EGSCFLQNVRE 237 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~ 237 (557)
..+..+|+|++|+|||||++.+++.+...+ ++.+++..+.+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE 456 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE 456 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC
Confidence 456789999999999999999999875533 33444544443
No 489
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.39 E-value=0.05 Score=55.91 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCccccchhHHHHHHhhc-------c---cC--C----CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLG-------V---EW--E----DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~-------~---~~--~----~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|.+.-.+.+...+. . .. + ....+.|+|++|+|||+||+.++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 567888888887765441 0 00 0 1357999999999999999999987643
No 490
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.38 E-value=0.1 Score=53.34 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=27.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC 230 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 230 (557)
....+.|.|+||.|||+|.+++.+.+...-..+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~ 54 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVL 54 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEE
Confidence 4568899999999999999999998876544333
No 491
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.36 E-value=0.034 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.522 Sum_probs=19.5
Q ss_pred EEEeccCCCchhHHHHHHHHH
Q 008685 201 LGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~ 221 (557)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 492
>PRK14531 adenylate kinase; Provisional
Probab=94.35 E-value=0.036 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.|.|.|++|+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999874
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.35 E-value=0.039 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~ 219 (557)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999976
No 494
>PRK04182 cytidylate kinase; Provisional
Probab=94.34 E-value=0.033 Score=50.46 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 495
>PRK06761 hypothetical protein; Provisional
Probab=94.34 E-value=0.049 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987654
No 496
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.34 E-value=0.26 Score=53.43 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=23.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.++..|.|.+|.||||++..+...+...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3689999999999999999988776443
No 497
>PLN02924 thymidylate kinase
Probab=94.31 E-value=0.22 Score=46.79 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
....|+|.|..|+||||++..+++.+...
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999998765
No 498
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.31 E-value=0.1 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..-++.|+|.+|.||||+.+.+....
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34689999999999999999988664
No 499
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.30 E-value=0.036 Score=49.19 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=23.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
+-|.++|+.|.||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999875544
No 500
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.29 E-value=0.035 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|+|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999876
Done!