Query 008685
Match_columns 557
No_of_seqs 466 out of 3217
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 3.3E-44 1.1E-48 317.2 9.7 166 1-170 9-175 (176)
2 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-41 4.4E-46 365.0 22.0 296 178-486 131-472 (549)
3 3ozi_A L6TR; plant TIR domain, 100.0 8E-43 2.7E-47 312.7 10.2 165 1-167 36-202 (204)
4 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-38 1.7E-42 370.3 22.0 303 169-485 119-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 4.9E-36 1.7E-40 325.9 22.9 324 168-510 118-497 (591)
6 1vt4_I APAF-1 related killer D 100.0 1.3E-35 4.5E-40 323.3 19.5 275 175-478 128-436 (1221)
7 3h16_A TIR protein; bacteria T 99.9 3.2E-28 1.1E-32 214.9 4.2 113 1-114 21-134 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 9.1E-25 3.1E-29 189.6 -1.7 131 1-133 11-145 (146)
9 2js7_A Myeloid differentiation 99.8 1E-21 3.5E-26 173.3 2.7 96 1-98 17-117 (160)
10 1fyx_A TOLL-like receptor 2; b 99.8 9.8E-22 3.3E-26 171.7 1.6 96 1-98 6-107 (149)
11 2j67_A TOLL like receptor 10; 99.8 4.3E-21 1.5E-25 171.9 3.1 93 1-95 36-133 (178)
12 2qen_A Walker-type ATPase; unk 99.8 1.1E-18 3.6E-23 176.4 19.0 287 170-479 8-349 (350)
13 1t3g_A X-linked interleukin-1 99.8 2E-20 7E-25 164.8 5.4 96 1-96 3-112 (159)
14 2fna_A Conserved hypothetical 99.8 3.7E-18 1.3E-22 172.9 19.8 283 175-478 13-356 (357)
15 1w5s_A Origin recognition comp 99.7 2.9E-16 1E-20 162.3 21.0 289 175-474 22-387 (412)
16 2qby_B CDC6 homolog 3, cell di 99.6 1.4E-13 4.9E-18 140.7 24.8 273 175-463 20-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.5 1.5E-13 5.2E-18 140.3 19.6 277 175-463 20-348 (386)
18 1fnn_A CDC6P, cell division co 99.5 5.6E-13 1.9E-17 136.4 22.2 299 175-485 17-387 (389)
19 2v1u_A Cell division control p 99.5 2E-12 6.8E-17 132.1 22.9 277 175-463 19-351 (387)
20 3j0a_A TOLL-like receptor 5; m 99.5 3.3E-14 1.1E-18 160.4 6.8 96 1-98 671-774 (844)
21 1njg_A DNA polymerase III subu 99.4 2.6E-12 8.9E-17 122.0 14.9 192 175-379 23-231 (250)
22 2chg_A Replication factor C sm 99.3 2.9E-11 9.8E-16 113.1 17.1 183 175-376 17-204 (226)
23 1sxj_B Activator 1 37 kDa subu 99.2 1.9E-10 6.4E-15 114.3 16.6 181 175-375 21-209 (323)
24 1iqp_A RFCS; clamp loader, ext 99.1 4.6E-10 1.6E-14 111.7 15.0 183 175-377 25-213 (327)
25 1hqc_A RUVB; extended AAA-ATPa 99.1 3.8E-09 1.3E-13 105.0 20.9 253 175-467 12-302 (324)
26 2chq_A Replication factor C sm 99.0 7.9E-09 2.7E-13 102.3 18.7 180 175-375 17-203 (319)
27 1jr3_A DNA polymerase III subu 99.0 8.5E-09 2.9E-13 104.5 15.8 189 175-376 16-221 (373)
28 1sxj_D Activator 1 41 kDa subu 98.9 2.8E-07 9.6E-12 92.5 22.3 192 175-375 37-234 (353)
29 3pfi_A Holliday junction ATP-d 98.9 2.5E-08 8.5E-13 99.7 14.3 261 175-470 29-320 (338)
30 3bos_A Putative DNA replicatio 98.8 8.3E-09 2.9E-13 97.6 8.0 173 175-377 28-218 (242)
31 1jbk_A CLPB protein; beta barr 98.8 8.9E-09 3E-13 93.5 7.7 48 175-224 22-69 (195)
32 3h4m_A Proteasome-activating n 98.7 1.8E-07 6.1E-12 91.0 15.6 178 175-375 17-230 (285)
33 1sxj_A Activator 1 95 kDa subu 98.7 1.4E-07 4.6E-12 99.8 15.6 188 175-375 39-252 (516)
34 2z4s_A Chromosomal replication 98.7 1.1E-07 3.7E-12 98.3 13.3 182 175-375 105-305 (440)
35 3b9p_A CG5977-PA, isoform A; A 98.7 6.4E-07 2.2E-11 87.6 17.9 180 175-376 21-233 (297)
36 3d8b_A Fidgetin-like protein 1 98.7 6.5E-07 2.2E-11 90.0 18.2 203 150-377 63-296 (357)
37 1d2n_A N-ethylmaleimide-sensit 98.7 8E-07 2.7E-11 85.7 18.2 169 175-368 33-229 (272)
38 3syl_A Protein CBBX; photosynt 98.6 3.2E-07 1.1E-11 90.2 14.6 149 176-345 32-218 (309)
39 3eie_A Vacuolar protein sortin 98.6 1.1E-06 3.6E-11 87.1 17.7 180 175-376 18-228 (322)
40 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.4E-06 5E-11 83.3 18.2 181 175-375 6-221 (262)
41 3uk6_A RUVB-like 2; hexameric 98.6 7.8E-07 2.7E-11 89.8 17.1 197 175-376 44-303 (368)
42 3te6_A Regulatory protein SIR3 98.6 4.5E-07 1.6E-11 88.6 14.6 167 175-345 20-212 (318)
43 2qp9_X Vacuolar protein sortin 98.6 1.5E-06 5.2E-11 87.1 17.7 180 175-376 51-261 (355)
44 1l8q_A Chromosomal replication 98.6 1.4E-06 4.7E-11 86.4 16.7 178 175-373 11-205 (324)
45 1sxj_E Activator 1 40 kDa subu 98.6 5.4E-07 1.8E-11 90.5 14.0 194 175-375 14-236 (354)
46 1xwi_A SKD1 protein; VPS4B, AA 98.6 4.5E-06 1.5E-10 82.5 19.9 181 175-376 12-223 (322)
47 3pvs_A Replication-associated 98.5 6.8E-07 2.3E-11 92.3 13.5 175 175-375 26-214 (447)
48 3u61_B DNA polymerase accessor 98.5 9.9E-07 3.4E-11 87.4 13.8 175 175-373 26-213 (324)
49 3vfd_A Spastin; ATPase, microt 98.5 4.4E-06 1.5E-10 85.0 18.3 180 175-376 115-326 (389)
50 2zan_A Vacuolar protein sortin 98.5 6E-06 2.1E-10 85.3 18.9 186 170-376 129-345 (444)
51 1a5t_A Delta prime, HOLB; zinc 98.4 7.6E-06 2.6E-10 81.3 18.1 173 181-376 8-205 (334)
52 1sxj_C Activator 1 40 kDa subu 98.4 1.2E-05 3.9E-10 80.3 18.9 179 175-372 25-208 (340)
53 3cf0_A Transitional endoplasmi 98.4 9.9E-06 3.4E-10 79.2 17.1 174 175-371 15-223 (301)
54 2p65_A Hypothetical protein PF 98.4 1.4E-06 4.9E-11 78.3 10.2 48 175-224 22-69 (187)
55 1in4_A RUVB, holliday junction 98.3 1.4E-05 4.7E-10 79.4 17.5 262 175-471 25-318 (334)
56 1qvr_A CLPB protein; coiled co 98.3 3E-06 1E-10 95.1 11.8 171 175-366 170-369 (854)
57 4b4t_J 26S protease regulatory 98.3 1.4E-05 4.9E-10 80.0 15.4 177 170-369 143-354 (405)
58 3n70_A Transport activator; si 98.2 1.8E-06 6.3E-11 74.5 7.0 48 176-223 2-49 (145)
59 1lv7_A FTSH; alpha/beta domain 98.2 1.6E-05 5.3E-10 75.8 14.2 177 175-374 12-223 (257)
60 3pxg_A Negative regulator of g 98.2 1.3E-05 4.5E-10 83.4 14.2 145 175-344 180-338 (468)
61 4b4t_L 26S protease subunit RP 98.2 2.3E-05 7.7E-10 79.8 14.9 175 172-369 178-387 (437)
62 3hu3_A Transitional endoplasmi 98.1 1.6E-05 5.6E-10 82.8 12.9 179 175-375 204-414 (489)
63 4b4t_H 26S protease regulatory 98.1 8.3E-05 2.8E-09 75.6 17.2 174 172-368 206-414 (467)
64 4b4t_K 26S protease regulatory 98.1 2.7E-05 9.3E-10 79.1 13.6 172 174-368 171-378 (428)
65 1ofh_A ATP-dependent HSL prote 98.1 2.4E-05 8E-10 76.7 12.5 49 175-223 15-75 (310)
66 3ec2_A DNA replication protein 98.0 1.3E-05 4.4E-10 71.9 8.9 44 180-223 19-63 (180)
67 1r6b_X CLPA protein; AAA+, N-t 98.0 4.4E-05 1.5E-09 84.7 14.8 150 175-344 186-362 (758)
68 4b4t_M 26S protease regulatory 98.0 5.2E-05 1.8E-09 77.1 14.1 176 170-368 176-386 (434)
69 4b4t_I 26S protease regulatory 98.0 5.8E-05 2E-09 76.0 13.6 171 175-368 182-387 (437)
70 2w58_A DNAI, primosome compone 98.0 2.2E-05 7.6E-10 71.8 9.9 59 175-233 25-89 (202)
71 2r62_A Cell division protease 98.0 2.4E-06 8.4E-11 82.0 3.3 151 175-344 11-196 (268)
72 4fcw_A Chaperone protein CLPB; 98.0 4.9E-05 1.7E-09 74.5 12.6 51 175-225 17-74 (311)
73 3pxi_A Negative regulator of g 98.0 4.2E-05 1.4E-09 84.8 12.9 145 175-344 180-338 (758)
74 1ojl_A Transcriptional regulat 98.0 3.2E-05 1.1E-09 75.6 10.6 49 175-223 2-50 (304)
75 2gno_A DNA polymerase III, gam 97.9 8.8E-05 3E-09 72.3 13.1 146 179-344 1-152 (305)
76 2ce7_A Cell division protein F 97.9 0.00013 4.6E-09 75.3 14.6 173 175-369 16-221 (476)
77 2bjv_A PSP operon transcriptio 97.8 3.4E-05 1.2E-09 73.8 7.9 50 175-224 6-55 (265)
78 2kjq_A DNAA-related protein; s 97.8 2.5E-05 8.5E-10 67.6 5.8 37 197-233 35-71 (149)
79 3pxi_A Negative regulator of g 97.8 0.00012 4.3E-09 80.9 12.8 147 175-344 491-675 (758)
80 3co5_A Putative two-component 97.7 9.4E-06 3.2E-10 69.8 2.5 48 175-222 4-51 (143)
81 2c9o_A RUVB-like 1; hexameric 97.7 0.0014 4.7E-08 67.9 18.9 95 278-375 297-409 (456)
82 3cf2_A TER ATPase, transitiona 97.7 0.00018 6.1E-09 78.8 11.9 172 175-369 204-407 (806)
83 1ixz_A ATP-dependent metallopr 97.6 0.00057 1.9E-08 64.7 13.4 172 175-369 16-221 (254)
84 1iy2_A ATP-dependent metallopr 97.6 0.00054 1.8E-08 65.9 12.5 172 175-369 40-245 (278)
85 3t15_A Ribulose bisphosphate c 97.6 0.00041 1.4E-08 67.3 11.5 27 197-223 35-61 (293)
86 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00071 2.4E-08 70.3 13.5 173 175-369 31-236 (499)
87 2x8a_A Nuclear valosin-contain 97.5 0.002 6.7E-08 61.7 15.1 150 175-344 10-191 (274)
88 1ypw_A Transitional endoplasmi 97.5 0.00056 1.9E-08 75.8 12.7 151 175-345 204-386 (806)
89 3m6a_A ATP-dependent protease 97.4 0.004 1.4E-07 65.8 17.1 158 176-344 82-266 (543)
90 1um8_A ATP-dependent CLP prote 97.3 0.00072 2.5E-08 68.1 9.8 26 198-223 72-97 (376)
91 1eiw_A Hypothetical protein MT 97.2 0.00034 1.2E-08 56.4 5.0 60 2-80 6-65 (111)
92 1g5t_A COB(I)alamin adenosyltr 97.1 0.0011 3.7E-08 59.4 7.6 111 199-314 29-163 (196)
93 2qgz_A Helicase loader, putati 97.0 0.0013 4.6E-08 64.1 8.3 52 182-233 135-188 (308)
94 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0036 1.2E-07 69.2 12.3 48 175-222 458-512 (758)
95 1qvr_A CLPB protein; coiled co 97.0 0.0026 8.9E-08 71.2 10.8 49 176-224 559-614 (854)
96 2cvh_A DNA repair and recombin 96.9 0.0028 9.5E-08 58.2 8.8 45 186-233 8-52 (220)
97 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0042 1.4E-07 57.5 9.2 48 186-233 11-58 (235)
98 1jr3_D DNA polymerase III, del 96.7 0.021 7.2E-07 56.4 13.9 156 197-375 17-184 (343)
99 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.003 1E-07 61.1 6.9 25 197-221 122-146 (331)
100 1rz3_A Hypothetical protein rb 96.5 0.0038 1.3E-07 56.7 6.5 45 180-224 3-48 (201)
101 1ye8_A Protein THEP1, hypothet 96.4 0.028 9.7E-07 49.7 11.6 24 200-223 2-25 (178)
102 3jvv_A Twitching mobility prot 96.4 0.0027 9.3E-08 63.1 4.9 110 198-317 123-234 (356)
103 3cf2_A TER ATPase, transitiona 96.4 0.0031 1.1E-07 69.1 5.7 171 175-368 477-682 (806)
104 3hr8_A Protein RECA; alpha and 96.3 0.02 6.7E-07 56.7 11.0 49 185-233 47-96 (356)
105 3c8u_A Fructokinase; YP_612366 96.3 0.0036 1.2E-07 57.1 5.2 42 183-224 7-48 (208)
106 3hws_A ATP-dependent CLP prote 96.3 0.0026 8.9E-08 63.6 4.5 47 176-222 16-75 (363)
107 2orw_A Thymidine kinase; TMTK, 96.3 0.002 6.8E-08 57.7 3.0 27 199-225 4-30 (184)
108 1qhx_A CPT, protein (chloramph 96.2 0.0021 7.3E-08 56.9 2.9 25 199-223 4-28 (178)
109 2r44_A Uncharacterized protein 96.2 0.0022 7.5E-08 63.3 3.1 46 175-224 27-72 (331)
110 2eyu_A Twitching motility prot 96.1 0.019 6.5E-07 54.3 9.2 109 197-316 24-135 (261)
111 3kb2_A SPBC2 prophage-derived 95.9 0.0038 1.3E-07 54.8 3.2 25 199-223 2-26 (173)
112 1odf_A YGR205W, hypothetical 3 95.9 0.0081 2.8E-07 57.9 5.6 30 195-224 28-57 (290)
113 3vaa_A Shikimate kinase, SK; s 95.8 0.0046 1.6E-07 56.0 3.4 26 197-222 24-49 (199)
114 3uie_A Adenylyl-sulfate kinase 95.8 0.0088 3E-07 54.1 5.3 27 197-223 24-50 (200)
115 2z43_A DNA repair and recombin 95.8 0.031 1.1E-06 54.7 9.6 48 186-233 95-148 (324)
116 3trf_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 55.1 3.1 25 198-222 5-29 (185)
117 1v5w_A DMC1, meiotic recombina 95.8 0.046 1.6E-06 54.0 10.6 48 186-233 110-163 (343)
118 1nks_A Adenylate kinase; therm 95.8 0.0089 3E-07 53.4 5.0 26 199-224 2-27 (194)
119 1vma_A Cell division protein F 95.8 0.043 1.5E-06 53.1 10.1 51 182-232 82-138 (306)
120 3tlx_A Adenylate kinase 2; str 95.7 0.0072 2.5E-07 56.6 4.5 41 182-222 13-53 (243)
121 1g8p_A Magnesium-chelatase 38 95.7 0.0059 2E-07 60.5 4.1 47 175-223 24-70 (350)
122 1ly1_A Polynucleotide kinase; 95.7 0.0056 1.9E-07 54.1 3.4 22 199-220 3-24 (181)
123 3sr0_A Adenylate kinase; phosp 95.6 0.0098 3.3E-07 54.1 4.7 23 200-222 2-24 (206)
124 1ex7_A Guanylate kinase; subst 95.6 0.0037 1.3E-07 55.8 1.8 28 199-226 2-29 (186)
125 2rhm_A Putative kinase; P-loop 95.6 0.0081 2.8E-07 53.8 4.1 26 197-222 4-29 (193)
126 1zp6_A Hypothetical protein AT 95.6 0.0067 2.3E-07 54.3 3.5 25 197-221 8-32 (191)
127 1tue_A Replication protein E1; 95.6 0.0095 3.3E-07 53.6 4.2 41 182-223 43-83 (212)
128 1kgd_A CASK, peripheral plasma 95.6 0.0071 2.4E-07 53.8 3.5 26 198-223 5-30 (180)
129 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0052 1.8E-07 63.9 2.9 45 175-223 22-66 (500)
130 1sky_E F1-ATPase, F1-ATP synth 95.5 0.035 1.2E-06 56.6 8.9 32 199-230 152-183 (473)
131 3bh0_A DNAB-like replicative h 95.5 0.018 6.2E-07 56.2 6.5 49 184-233 55-103 (315)
132 2yvu_A Probable adenylyl-sulfa 95.5 0.014 4.7E-07 52.0 5.3 29 197-225 12-40 (186)
133 3lw7_A Adenylate kinase relate 95.5 0.0061 2.1E-07 53.5 2.8 20 199-218 2-21 (179)
134 2dr3_A UPF0273 protein PH0284; 95.5 0.013 4.3E-07 54.8 5.2 45 189-233 14-58 (247)
135 3hyn_A Putative signal transdu 95.5 0.061 2.1E-06 46.6 8.7 97 8-109 27-133 (189)
136 1zuh_A Shikimate kinase; alpha 95.5 0.0075 2.6E-07 52.8 3.2 26 198-223 7-32 (168)
137 1kag_A SKI, shikimate kinase I 95.4 0.0064 2.2E-07 53.5 2.6 25 199-223 5-29 (173)
138 1knq_A Gluconate kinase; ALFA/ 95.4 0.011 3.8E-07 52.0 4.2 26 197-222 7-32 (175)
139 2zr9_A Protein RECA, recombina 95.4 0.026 8.8E-07 55.9 7.2 49 185-233 47-96 (349)
140 1kht_A Adenylate kinase; phosp 95.4 0.0081 2.8E-07 53.6 3.3 26 199-224 4-29 (192)
141 2px0_A Flagellar biosynthesis 95.4 0.13 4.6E-06 49.4 12.1 36 197-232 104-140 (296)
142 1gvn_B Zeta; postsegregational 95.4 0.014 4.8E-07 56.2 5.1 26 197-222 32-57 (287)
143 3iij_A Coilin-interacting nucl 95.4 0.0064 2.2E-07 53.9 2.5 25 198-222 11-35 (180)
144 3t61_A Gluconokinase; PSI-biol 95.4 0.0066 2.3E-07 55.0 2.6 25 198-222 18-42 (202)
145 1xjc_A MOBB protein homolog; s 95.4 0.015 5.1E-07 50.9 4.7 29 197-225 3-31 (169)
146 2ze6_A Isopentenyl transferase 95.4 0.0092 3.1E-07 56.3 3.6 25 199-223 2-26 (253)
147 2plr_A DTMP kinase, probable t 95.3 0.017 5.9E-07 52.4 5.3 29 198-226 4-32 (213)
148 4eun_A Thermoresistant glucoki 95.3 0.0096 3.3E-07 53.9 3.4 26 197-222 28-53 (200)
149 1tev_A UMP-CMP kinase; ploop, 95.3 0.011 3.6E-07 53.0 3.7 25 198-222 3-27 (196)
150 2ga8_A Hypothetical 39.9 kDa p 95.2 0.012 4E-07 57.9 4.0 46 181-226 5-52 (359)
151 2r2a_A Uncharacterized protein 95.2 0.04 1.4E-06 49.7 7.3 23 199-221 6-28 (199)
152 3ice_A Transcription terminati 95.2 0.0065 2.2E-07 60.1 2.2 30 197-226 173-202 (422)
153 2vli_A Antibiotic resistance p 95.2 0.0074 2.5E-07 53.5 2.4 26 198-223 5-30 (183)
154 2c95_A Adenylate kinase 1; tra 95.2 0.011 3.6E-07 53.1 3.5 26 197-222 8-33 (196)
155 1ukz_A Uridylate kinase; trans 95.2 0.012 4.1E-07 53.2 3.9 26 197-222 14-39 (203)
156 1y63_A LMAJ004144AAA protein; 95.2 0.012 4E-07 52.5 3.7 25 197-221 9-33 (184)
157 1nn5_A Similar to deoxythymidy 95.2 0.016 5.4E-07 52.8 4.7 28 198-225 9-36 (215)
158 3cm0_A Adenylate kinase; ATP-b 95.2 0.012 4.1E-07 52.4 3.8 25 198-222 4-28 (186)
159 1via_A Shikimate kinase; struc 95.2 0.0091 3.1E-07 52.6 2.9 24 200-223 6-29 (175)
160 1u94_A RECA protein, recombina 95.2 0.03 1E-06 55.4 7.0 49 185-233 49-98 (356)
161 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 54.0 3.3 27 197-223 7-33 (208)
162 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.9E-07 55.6 3.6 28 196-223 20-47 (252)
163 2qor_A Guanylate kinase; phosp 95.1 0.009 3.1E-07 54.2 2.7 27 197-223 11-37 (204)
164 2iyv_A Shikimate kinase, SK; t 95.1 0.0083 2.8E-07 53.4 2.4 25 199-223 3-27 (184)
165 4a74_A DNA repair and recombin 95.1 0.025 8.6E-07 52.0 5.9 38 186-223 13-50 (231)
166 1n0w_A DNA repair protein RAD5 95.1 0.022 7.4E-07 53.0 5.4 48 186-233 12-65 (243)
167 3e1s_A Exodeoxyribonuclease V, 95.1 0.069 2.3E-06 56.6 9.8 33 198-230 204-236 (574)
168 3kl4_A SRP54, signal recogniti 95.1 0.071 2.4E-06 54.1 9.5 36 197-232 96-131 (433)
169 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.9E-07 53.1 3.3 26 198-223 12-37 (199)
170 3dzd_A Transcriptional regulat 95.1 0.093 3.2E-06 52.3 10.2 50 175-224 129-178 (368)
171 3a00_A Guanylate kinase, GMP k 95.1 0.0096 3.3E-07 53.2 2.7 29 199-227 2-30 (186)
172 2jaq_A Deoxyguanosine kinase; 95.1 0.012 4.2E-07 53.1 3.4 24 200-223 2-25 (205)
173 2cdn_A Adenylate kinase; phosp 95.0 0.014 4.7E-07 52.8 3.7 25 198-222 20-44 (201)
174 1aky_A Adenylate kinase; ATP:A 95.0 0.012 4.3E-07 54.0 3.4 25 198-222 4-28 (220)
175 3umf_A Adenylate kinase; rossm 95.0 0.015 5.3E-07 53.2 3.9 27 196-222 27-53 (217)
176 3tr0_A Guanylate kinase, GMP k 95.0 0.012 4.3E-07 53.1 3.3 25 198-222 7-31 (205)
177 1e6c_A Shikimate kinase; phosp 95.0 0.01 3.6E-07 52.0 2.7 25 199-223 3-27 (173)
178 3upu_A ATP-dependent DNA helic 95.0 0.064 2.2E-06 55.3 9.1 29 199-227 46-74 (459)
179 1qf9_A UMP/CMP kinase, protein 95.0 0.014 4.9E-07 52.0 3.6 25 198-222 6-30 (194)
180 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.014 4.7E-07 55.3 3.6 26 198-223 4-29 (260)
181 3asz_A Uridine kinase; cytidin 95.0 0.016 5.4E-07 52.8 3.9 27 197-223 5-31 (211)
182 1uf9_A TT1252 protein; P-loop, 94.9 0.015 5.1E-07 52.5 3.6 26 196-221 6-31 (203)
183 3p32_A Probable GTPase RV1496/ 94.9 0.045 1.5E-06 54.4 7.2 47 184-230 65-111 (355)
184 2wwf_A Thymidilate kinase, put 94.9 0.015 5.1E-07 52.9 3.5 28 198-225 10-37 (212)
185 3io5_A Recombination and repai 94.9 0.032 1.1E-06 53.7 5.8 34 200-233 30-65 (333)
186 2pt5_A Shikimate kinase, SK; a 94.9 0.015 5.2E-07 50.7 3.4 24 200-223 2-25 (168)
187 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5E-07 52.0 3.4 22 199-220 3-24 (189)
188 2j41_A Guanylate kinase; GMP, 94.9 0.014 4.9E-07 52.8 3.3 25 198-222 6-30 (207)
189 3e70_C DPA, signal recognition 94.9 0.037 1.3E-06 54.2 6.4 30 196-225 127-156 (328)
190 2ewv_A Twitching motility prot 94.9 0.052 1.8E-06 54.2 7.7 110 197-315 135-245 (372)
191 3tqc_A Pantothenate kinase; bi 94.8 0.024 8.1E-07 55.2 4.9 48 177-224 69-118 (321)
192 2qt1_A Nicotinamide riboside k 94.8 0.017 5.8E-07 52.5 3.7 26 196-221 19-44 (207)
193 1cke_A CK, MSSA, protein (cyti 94.8 0.015 5.2E-07 53.6 3.4 24 199-222 6-29 (227)
194 2pez_A Bifunctional 3'-phospho 94.8 0.029 1E-06 49.5 5.2 28 197-224 4-31 (179)
195 2p5t_B PEZT; postsegregational 94.8 0.023 7.8E-07 53.5 4.6 27 197-223 31-57 (253)
196 3dm5_A SRP54, signal recogniti 94.8 0.11 3.7E-06 52.8 9.8 36 197-232 99-134 (443)
197 3ney_A 55 kDa erythrocyte memb 94.8 0.016 5.5E-07 52.1 3.3 27 197-223 18-44 (197)
198 2pbr_A DTMP kinase, thymidylat 94.8 0.017 5.7E-07 51.7 3.4 25 200-224 2-26 (195)
199 1g41_A Heat shock protein HSLU 94.7 0.018 6.2E-07 58.6 3.9 50 175-224 15-76 (444)
200 1u0j_A DNA replication protein 94.7 0.028 9.7E-07 52.9 4.8 40 183-222 89-128 (267)
201 2if2_A Dephospho-COA kinase; a 94.7 0.016 5.5E-07 52.4 3.1 21 200-220 3-23 (204)
202 4a1f_A DNAB helicase, replicat 94.6 0.072 2.4E-06 52.2 7.8 65 184-256 33-97 (338)
203 3be4_A Adenylate kinase; malar 94.6 0.017 5.7E-07 53.0 3.1 25 198-222 5-29 (217)
204 4gp7_A Metallophosphoesterase; 94.6 0.016 5.5E-07 50.9 2.8 22 197-218 8-29 (171)
205 3fb4_A Adenylate kinase; psych 94.6 0.019 6.4E-07 52.5 3.4 23 200-222 2-24 (216)
206 1zu4_A FTSY; GTPase, signal re 94.6 0.05 1.7E-06 53.1 6.6 36 197-232 104-139 (320)
207 2bbw_A Adenylate kinase 4, AK4 94.6 0.018 6.2E-07 53.9 3.3 25 198-222 27-51 (246)
208 2j9r_A Thymidine kinase; TK1, 94.6 0.058 2E-06 48.9 6.4 111 197-315 27-139 (214)
209 1tf7_A KAIC; homohexamer, hexa 94.6 0.083 2.8E-06 55.5 8.7 46 187-232 270-315 (525)
210 1zd8_A GTP:AMP phosphotransfer 94.5 0.018 6.2E-07 53.2 3.2 25 198-222 7-31 (227)
211 3fwy_A Light-independent proto 94.5 0.034 1.1E-06 54.1 5.2 38 196-233 46-83 (314)
212 1zak_A Adenylate kinase; ATP:A 94.5 0.017 5.9E-07 53.1 3.0 26 198-223 5-30 (222)
213 1rj9_A FTSY, signal recognitio 94.5 0.033 1.1E-06 53.9 5.1 36 197-233 101-136 (304)
214 2z0h_A DTMP kinase, thymidylat 94.5 0.021 7E-07 51.2 3.4 25 200-224 2-26 (197)
215 2grj_A Dephospho-COA kinase; T 94.5 0.02 6.9E-07 51.4 3.3 26 197-222 11-36 (192)
216 2ck3_D ATP synthase subunit be 94.5 0.075 2.6E-06 54.1 7.7 29 197-225 152-180 (482)
217 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.014 4.9E-07 57.3 2.4 105 198-314 171-275 (330)
218 2ehv_A Hypothetical protein PH 94.5 0.023 7.8E-07 53.1 3.7 37 197-233 29-66 (251)
219 1xp8_A RECA protein, recombina 94.5 0.067 2.3E-06 53.1 7.2 50 184-233 59-109 (366)
220 1gtv_A TMK, thymidylate kinase 94.5 0.014 4.8E-07 53.2 2.1 25 200-224 2-26 (214)
221 1j8m_F SRP54, signal recogniti 94.4 0.059 2E-06 51.9 6.6 36 198-233 98-133 (297)
222 1jjv_A Dephospho-COA kinase; P 94.4 0.021 7.1E-07 51.8 3.2 22 199-220 3-24 (206)
223 1lvg_A Guanylate kinase, GMP k 94.4 0.016 5.6E-07 52.3 2.4 26 198-223 4-29 (198)
224 1m7g_A Adenylylsulfate kinase; 94.4 0.027 9.2E-07 51.3 3.9 27 197-223 24-50 (211)
225 3dl0_A Adenylate kinase; phosp 94.4 0.022 7.6E-07 52.0 3.3 23 200-222 2-24 (216)
226 2v54_A DTMP kinase, thymidylat 94.3 0.022 7.4E-07 51.5 3.1 25 198-222 4-28 (204)
227 2jeo_A Uridine-cytidine kinase 94.3 0.027 9.4E-07 52.6 3.9 26 197-222 24-49 (245)
228 3hjn_A DTMP kinase, thymidylat 94.3 0.12 4E-06 46.5 7.9 34 200-233 2-35 (197)
229 4edh_A DTMP kinase, thymidylat 94.3 0.19 6.5E-06 45.7 9.4 28 198-225 6-33 (213)
230 4e22_A Cytidylate kinase; P-lo 94.3 0.024 8.1E-07 53.4 3.4 26 197-222 26-51 (252)
231 2zts_A Putative uncharacterize 94.2 0.04 1.4E-06 51.4 4.7 44 190-233 22-66 (251)
232 1a7j_A Phosphoribulokinase; tr 94.2 0.021 7.1E-07 55.0 2.8 27 197-223 4-30 (290)
233 1znw_A Guanylate kinase, GMP k 94.1 0.024 8.1E-07 51.5 3.0 26 197-222 19-44 (207)
234 2wsm_A Hydrogenase expression/ 94.1 0.055 1.9E-06 49.4 5.4 45 179-225 13-57 (221)
235 1htw_A HI0065; nucleotide-bind 94.1 0.031 1.1E-06 48.4 3.4 27 196-222 31-57 (158)
236 3aez_A Pantothenate kinase; tr 94.1 0.032 1.1E-06 54.2 4.0 29 196-224 88-116 (312)
237 2hf9_A Probable hydrogenase ni 94.1 0.054 1.8E-06 49.7 5.4 43 181-225 23-65 (226)
238 3b9q_A Chloroplast SRP recepto 94.1 0.047 1.6E-06 52.8 5.1 35 197-232 99-133 (302)
239 3k1j_A LON protease, ATP-depen 94.0 0.04 1.4E-06 59.0 5.0 47 175-225 41-87 (604)
240 1g8f_A Sulfate adenylyltransfe 94.0 0.045 1.5E-06 56.8 5.1 49 176-224 373-421 (511)
241 2r8r_A Sensor protein; KDPD, P 94.0 0.045 1.6E-06 50.0 4.6 34 199-232 7-40 (228)
242 2f6r_A COA synthase, bifunctio 94.0 0.03 1E-06 53.7 3.5 24 197-220 74-97 (281)
243 3nwj_A ATSK2; P loop, shikimat 94.0 0.023 7.8E-07 53.4 2.6 26 198-223 48-73 (250)
244 1s96_A Guanylate kinase, GMP k 94.0 0.026 9E-07 51.8 3.0 27 197-223 15-41 (219)
245 3ake_A Cytidylate kinase; CMP 94.0 0.031 1.1E-06 50.6 3.4 24 200-223 4-27 (208)
246 1fx0_B ATP synthase beta chain 94.0 0.11 3.6E-06 53.2 7.6 36 197-232 164-200 (498)
247 3d3q_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 54.8 3.5 25 199-223 8-32 (340)
248 1vht_A Dephospho-COA kinase; s 94.0 0.033 1.1E-06 50.9 3.6 23 198-220 4-26 (218)
249 1z6g_A Guanylate kinase; struc 94.0 0.023 8E-07 52.1 2.6 26 197-222 22-47 (218)
250 3r20_A Cytidylate kinase; stru 93.9 0.029 1E-06 51.9 3.1 25 198-222 9-33 (233)
251 1e4v_A Adenylate kinase; trans 93.9 0.032 1.1E-06 50.9 3.4 23 200-222 2-24 (214)
252 1ak2_A Adenylate kinase isoenz 93.9 0.031 1E-06 51.8 3.3 26 198-223 16-41 (233)
253 2xxa_A Signal recognition part 93.9 0.087 3E-06 53.6 6.9 36 197-232 99-135 (433)
254 2xb4_A Adenylate kinase; ATP-b 93.9 0.033 1.1E-06 51.3 3.4 23 200-222 2-24 (223)
255 3exa_A TRNA delta(2)-isopenten 93.8 0.033 1.1E-06 53.7 3.3 25 198-222 3-27 (322)
256 1cr0_A DNA primase/helicase; R 93.8 0.054 1.8E-06 52.2 5.0 37 197-233 34-71 (296)
257 2qmh_A HPR kinase/phosphorylas 93.8 0.029 1E-06 50.1 2.7 25 198-222 34-58 (205)
258 1np6_A Molybdopterin-guanine d 93.8 0.059 2E-06 47.4 4.7 28 198-225 6-33 (174)
259 3crm_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 53.9 3.5 25 198-222 5-29 (323)
260 3a8t_A Adenylate isopentenyltr 93.7 0.024 8.2E-07 55.3 2.3 26 197-222 39-64 (339)
261 3cmu_A Protein RECA, recombina 93.7 0.076 2.6E-06 63.5 6.8 48 186-233 1414-1462(2050)
262 1puj_A YLQF, conserved hypothe 93.7 0.43 1.5E-05 45.4 11.1 36 43-79 13-48 (282)
263 3foz_A TRNA delta(2)-isopenten 93.7 0.042 1.5E-06 52.8 3.9 26 197-222 9-34 (316)
264 3lnc_A Guanylate kinase, GMP k 93.6 0.026 8.9E-07 52.2 2.3 25 198-222 27-52 (231)
265 1sq5_A Pantothenate kinase; P- 93.6 0.076 2.6E-06 51.5 5.6 28 196-223 78-105 (308)
266 2og2_A Putative signal recogni 93.6 0.064 2.2E-06 53.1 5.1 29 197-225 156-184 (359)
267 2q6t_A DNAB replication FORK h 93.6 0.21 7.3E-06 51.1 9.2 64 184-255 187-251 (444)
268 1pzn_A RAD51, DNA repair and r 93.6 0.046 1.6E-06 54.1 4.0 36 187-222 120-155 (349)
269 2b8t_A Thymidine kinase; deoxy 93.5 0.079 2.7E-06 48.6 5.2 36 197-232 11-46 (223)
270 3bgw_A DNAB-like replicative h 93.4 0.075 2.6E-06 54.4 5.5 48 185-233 185-232 (444)
271 1ltq_A Polynucleotide kinase; 93.4 0.043 1.5E-06 53.0 3.5 23 199-221 3-25 (301)
272 1svm_A Large T antigen; AAA+ f 93.4 0.056 1.9E-06 53.9 4.3 27 196-222 167-193 (377)
273 2i3b_A HCR-ntpase, human cance 93.4 0.04 1.4E-06 49.3 2.9 24 200-223 3-26 (189)
274 2f1r_A Molybdopterin-guanine d 93.3 0.031 1.1E-06 49.1 2.1 27 199-225 3-29 (171)
275 4hlc_A DTMP kinase, thymidylat 93.3 0.24 8.3E-06 44.7 8.1 29 199-227 3-31 (205)
276 1yrb_A ATP(GTP)binding protein 93.3 0.088 3E-06 49.5 5.3 35 197-232 13-47 (262)
277 2yhs_A FTSY, cell division pro 93.2 0.077 2.6E-06 54.5 5.1 35 197-232 292-326 (503)
278 3end_A Light-independent proto 93.2 0.081 2.8E-06 51.2 5.2 38 196-233 39-76 (307)
279 4eaq_A DTMP kinase, thymidylat 93.2 0.06 2E-06 49.8 4.0 28 197-224 25-52 (229)
280 3lda_A DNA repair protein RAD5 93.2 0.086 3E-06 53.0 5.4 37 185-221 165-201 (400)
281 1nlf_A Regulatory protein REPA 93.2 0.08 2.7E-06 50.5 4.9 28 197-224 29-56 (279)
282 1ls1_A Signal recognition part 93.1 0.088 3E-06 50.7 5.1 36 197-232 97-132 (295)
283 2i1q_A DNA repair and recombin 93.1 0.09 3.1E-06 51.3 5.3 37 186-222 86-122 (322)
284 3b85_A Phosphate starvation-in 93.0 0.046 1.6E-06 49.7 2.9 24 198-221 22-45 (208)
285 2j37_W Signal recognition part 93.0 0.14 4.6E-06 53.2 6.7 36 197-232 100-135 (504)
286 2r6a_A DNAB helicase, replicat 93.0 0.12 4.1E-06 53.2 6.2 47 186-233 192-239 (454)
287 3cr8_A Sulfate adenylyltranfer 93.0 0.074 2.5E-06 55.9 4.7 48 177-224 348-395 (552)
288 1cp2_A CP2, nitrogenase iron p 93.0 0.098 3.4E-06 49.4 5.2 35 199-233 2-36 (269)
289 3tif_A Uncharacterized ABC tra 93.0 0.043 1.5E-06 50.9 2.6 25 197-221 30-54 (235)
290 2p67_A LAO/AO transport system 92.9 0.15 5E-06 50.3 6.6 30 196-225 54-83 (341)
291 1q3t_A Cytidylate kinase; nucl 92.9 0.062 2.1E-06 49.9 3.6 26 197-222 15-40 (236)
292 1ypw_A Transitional endoplasmi 92.9 0.058 2E-06 59.7 3.9 51 175-225 477-538 (806)
293 3zvl_A Bifunctional polynucleo 92.8 0.042 1.4E-06 55.8 2.5 26 197-222 257-282 (416)
294 2onk_A Molybdate/tungstate ABC 92.8 0.053 1.8E-06 50.5 3.0 26 196-222 23-48 (240)
295 3lv8_A DTMP kinase, thymidylat 92.8 0.38 1.3E-05 44.5 8.8 35 198-232 27-62 (236)
296 3vr4_D V-type sodium ATPase su 92.8 0.11 3.6E-06 52.7 5.3 27 198-224 151-177 (465)
297 3eph_A TRNA isopentenyltransfe 92.8 0.067 2.3E-06 53.4 3.8 25 199-223 3-27 (409)
298 2afh_E Nitrogenase iron protei 92.7 0.11 3.6E-06 49.9 5.1 36 198-233 2-37 (289)
299 2v3c_C SRP54, signal recogniti 92.7 0.058 2E-06 54.9 3.3 35 198-232 99-133 (432)
300 2pcj_A ABC transporter, lipopr 92.7 0.048 1.7E-06 50.2 2.5 25 197-221 29-53 (224)
301 2cbz_A Multidrug resistance-as 92.6 0.051 1.7E-06 50.5 2.6 26 197-222 30-55 (237)
302 2qm8_A GTPase/ATPase; G protei 92.6 0.18 6E-06 49.6 6.6 29 196-224 53-81 (337)
303 2ocp_A DGK, deoxyguanosine kin 92.6 0.072 2.5E-06 49.5 3.6 26 198-223 2-27 (241)
304 4tmk_A Protein (thymidylate ki 92.5 0.45 1.5E-05 43.2 8.8 27 199-225 4-30 (213)
305 1b0u_A Histidine permease; ABC 92.4 0.055 1.9E-06 51.1 2.6 25 197-221 31-55 (262)
306 1mv5_A LMRA, multidrug resista 92.4 0.063 2.2E-06 50.1 3.0 25 197-221 27-51 (243)
307 2v9p_A Replication protein E1; 92.4 0.069 2.3E-06 51.5 3.2 27 196-222 124-150 (305)
308 2gks_A Bifunctional SAT/APS ki 92.4 0.17 5.8E-06 53.2 6.4 48 177-224 351-398 (546)
309 3tqf_A HPR(Ser) kinase; transf 92.3 0.084 2.9E-06 45.9 3.4 24 198-221 16-39 (181)
310 1oix_A RAS-related protein RAB 92.3 0.072 2.5E-06 47.5 3.1 24 198-221 29-52 (191)
311 2zu0_C Probable ATP-dependent 92.3 0.07 2.4E-06 50.6 3.1 25 197-221 45-69 (267)
312 2axn_A 6-phosphofructo-2-kinas 92.3 0.13 4.3E-06 53.9 5.3 30 197-226 34-63 (520)
313 2olj_A Amino acid ABC transpor 92.2 0.061 2.1E-06 50.8 2.6 25 197-221 49-73 (263)
314 3tmk_A Thymidylate kinase; pho 92.2 0.51 1.8E-05 42.9 8.7 27 198-224 5-31 (216)
315 2ged_A SR-beta, signal recogni 92.2 0.12 4E-06 45.9 4.4 25 197-221 47-71 (193)
316 2d2e_A SUFC protein; ABC-ATPas 92.2 0.072 2.4E-06 50.0 3.0 25 197-221 28-52 (250)
317 1q57_A DNA primase/helicase; d 92.1 0.31 1.1E-05 50.7 8.2 38 196-233 240-278 (503)
318 2dyk_A GTP-binding protein; GT 92.1 0.09 3.1E-06 44.9 3.4 23 199-221 2-24 (161)
319 1m8p_A Sulfate adenylyltransfe 92.1 0.14 4.8E-06 54.1 5.4 28 197-224 395-422 (573)
320 3gfo_A Cobalt import ATP-bindi 92.1 0.062 2.1E-06 51.1 2.4 25 197-221 33-57 (275)
321 1vpl_A ABC transporter, ATP-bi 92.1 0.066 2.3E-06 50.4 2.6 25 197-221 40-64 (256)
322 2ghi_A Transport protein; mult 92.0 0.066 2.3E-06 50.5 2.6 26 197-222 45-70 (260)
323 4g1u_C Hemin import ATP-bindin 92.0 0.065 2.2E-06 50.8 2.5 25 197-221 36-60 (266)
324 2pze_A Cystic fibrosis transme 91.9 0.067 2.3E-06 49.4 2.5 26 197-222 33-58 (229)
325 1ji0_A ABC transporter; ATP bi 91.9 0.066 2.3E-06 49.9 2.4 25 197-221 31-55 (240)
326 1sgw_A Putative ABC transporte 91.9 0.056 1.9E-06 49.3 1.9 25 197-221 34-58 (214)
327 2f9l_A RAB11B, member RAS onco 91.9 0.079 2.7E-06 47.5 2.9 24 198-221 5-28 (199)
328 2ixe_A Antigen peptide transpo 91.9 0.071 2.4E-06 50.6 2.6 25 197-221 44-68 (271)
329 2ffh_A Protein (FFH); SRP54, s 91.9 0.16 5.6E-06 51.3 5.4 36 197-232 97-132 (425)
330 2wji_A Ferrous iron transport 91.9 0.096 3.3E-06 45.3 3.3 23 199-221 4-26 (165)
331 1g6h_A High-affinity branched- 91.9 0.068 2.3E-06 50.4 2.4 25 197-221 32-56 (257)
332 2ff7_A Alpha-hemolysin translo 91.8 0.07 2.4E-06 49.9 2.5 25 197-221 34-58 (247)
333 3fdi_A Uncharacterized protein 91.8 0.092 3.1E-06 47.4 3.2 25 199-223 7-31 (201)
334 3ea0_A ATPase, para family; al 91.8 0.18 6.2E-06 46.7 5.4 37 197-233 3-41 (245)
335 2yz2_A Putative ABC transporte 91.8 0.074 2.5E-06 50.4 2.6 25 197-221 32-56 (266)
336 2zej_A Dardarin, leucine-rich 91.7 0.069 2.4E-06 47.2 2.2 21 200-220 4-24 (184)
337 2qe7_A ATP synthase subunit al 91.6 0.29 9.8E-06 50.1 6.8 26 197-222 161-187 (502)
338 1p9r_A General secretion pathw 91.6 0.26 8.8E-06 49.9 6.5 95 185-292 157-252 (418)
339 3oaa_A ATP synthase subunit al 91.6 0.28 9.6E-06 50.1 6.7 25 197-221 161-186 (513)
340 2qi9_C Vitamin B12 import ATP- 91.5 0.079 2.7E-06 49.6 2.4 27 197-223 25-51 (249)
341 2r9v_A ATP synthase subunit al 91.5 0.29 9.9E-06 50.1 6.7 26 197-222 174-200 (515)
342 2nq2_C Hypothetical ABC transp 91.5 0.082 2.8E-06 49.6 2.5 26 197-222 30-55 (253)
343 4dzz_A Plasmid partitioning pr 91.4 0.19 6.3E-06 45.2 4.8 35 199-233 2-37 (206)
344 2ce2_X GTPase HRAS; signaling 91.4 0.1 3.4E-06 44.6 2.9 22 200-221 5-26 (166)
345 1tq4_A IIGP1, interferon-induc 91.4 0.096 3.3E-06 52.8 3.0 26 196-221 67-92 (413)
346 3gmt_A Adenylate kinase; ssgci 91.3 0.12 4.1E-06 47.5 3.4 24 199-222 9-32 (230)
347 3thx_A DNA mismatch repair pro 91.3 0.35 1.2E-05 54.0 7.8 23 197-219 661-683 (934)
348 2vp4_A Deoxynucleoside kinase; 91.3 0.078 2.7E-06 49.0 2.2 26 196-221 18-43 (230)
349 1z2a_A RAS-related protein RAB 91.3 0.13 4.3E-06 44.3 3.5 24 198-221 5-28 (168)
350 3kjh_A CO dehydrogenase/acetyl 91.3 0.16 5.5E-06 47.2 4.5 33 201-233 3-35 (254)
351 1fzq_A ADP-ribosylation factor 91.3 0.16 5.4E-06 44.7 4.1 26 196-221 14-39 (181)
352 2ihy_A ABC transporter, ATP-bi 91.3 0.085 2.9E-06 50.3 2.4 25 197-221 46-70 (279)
353 3ld9_A DTMP kinase, thymidylat 91.2 0.15 5.1E-06 46.7 4.0 28 197-224 20-47 (223)
354 1fx0_A ATP synthase alpha chai 91.2 0.28 9.5E-06 50.3 6.3 26 197-222 162-188 (507)
355 3gqb_B V-type ATP synthase bet 91.2 0.29 9.8E-06 49.5 6.3 26 198-223 147-172 (464)
356 3f9v_A Minichromosome maintena 91.2 0.052 1.8E-06 57.8 1.0 48 175-222 295-351 (595)
357 3kta_A Chromosome segregation 91.1 0.11 3.8E-06 45.8 2.9 23 200-222 28-50 (182)
358 2h92_A Cytidylate kinase; ross 91.1 0.098 3.3E-06 47.7 2.7 24 199-222 4-27 (219)
359 3zq6_A Putative arsenical pump 91.1 0.2 6.8E-06 48.9 5.0 36 198-233 14-49 (324)
360 3fvq_A Fe(3+) IONS import ATP- 91.0 0.11 3.8E-06 51.2 3.1 25 197-221 29-53 (359)
361 2www_A Methylmalonic aciduria 91.0 0.22 7.7E-06 49.1 5.3 29 197-225 73-101 (349)
362 2wjg_A FEOB, ferrous iron tran 91.0 0.13 4.4E-06 45.3 3.3 24 198-221 7-30 (188)
363 3sop_A Neuronal-specific septi 91.0 0.11 3.8E-06 49.2 3.0 23 200-222 4-26 (270)
364 1bif_A 6-phosphofructo-2-kinas 91.0 0.2 6.9E-06 51.7 5.2 30 197-226 38-67 (469)
365 1nij_A Hypothetical protein YJ 90.9 0.12 4.3E-06 50.2 3.3 26 197-222 3-28 (318)
366 4dkx_A RAS-related protein RAB 90.8 0.31 1.1E-05 44.4 5.7 22 200-221 15-36 (216)
367 2nzj_A GTP-binding protein REM 90.8 0.15 5.1E-06 44.2 3.5 24 198-221 4-27 (175)
368 2bbs_A Cystic fibrosis transme 90.8 0.11 3.6E-06 49.9 2.6 26 197-222 63-88 (290)
369 3v9p_A DTMP kinase, thymidylat 90.8 0.12 4.3E-06 47.4 3.0 28 198-225 25-52 (227)
370 3con_A GTPase NRAS; structural 90.8 0.12 4.2E-06 45.6 2.9 23 199-221 22-44 (190)
371 3ug7_A Arsenical pump-driving 90.8 0.3 1E-05 48.2 6.0 38 196-233 24-61 (349)
372 3nh6_A ATP-binding cassette SU 90.7 0.087 3E-06 50.9 2.0 25 197-221 79-103 (306)
373 1kao_A RAP2A; GTP-binding prot 90.7 0.13 4.3E-06 44.1 2.9 22 200-221 5-26 (167)
374 3io3_A DEHA2D07832P; chaperone 90.7 0.25 8.5E-06 48.7 5.3 38 196-233 16-55 (348)
375 1r8s_A ADP-ribosylation factor 90.6 0.14 4.7E-06 43.9 3.0 21 201-221 3-23 (164)
376 1z08_A RAS-related protein RAB 90.6 0.13 4.5E-06 44.3 2.9 24 198-221 6-29 (170)
377 1p5z_B DCK, deoxycytidine kina 90.6 0.068 2.3E-06 50.5 1.1 26 197-222 23-48 (263)
378 2yv5_A YJEQ protein; hydrolase 90.6 0.18 6.2E-06 48.6 4.2 33 184-222 156-188 (302)
379 3hdt_A Putative kinase; struct 90.6 0.16 5.6E-06 46.5 3.6 26 198-223 14-39 (223)
380 2c61_A A-type ATP synthase non 90.6 0.32 1.1E-05 49.5 6.0 26 198-223 152-177 (469)
381 2pjz_A Hypothetical protein ST 90.6 0.11 3.7E-06 49.1 2.4 25 198-222 30-54 (263)
382 1m7b_A RND3/RHOE small GTP-bin 90.6 0.13 4.4E-06 45.3 2.9 24 198-221 7-30 (184)
383 1c1y_A RAS-related protein RAP 90.6 0.13 4.6E-06 44.0 2.9 22 200-221 5-26 (167)
384 3bfv_A CAPA1, CAPB2, membrane 90.5 0.36 1.2E-05 45.7 6.1 51 183-233 65-118 (271)
385 3cio_A ETK, tyrosine-protein k 90.5 0.36 1.2E-05 46.4 6.2 38 196-233 102-140 (299)
386 1x6v_B Bifunctional 3'-phospho 90.5 0.18 6E-06 53.6 4.2 28 197-224 51-78 (630)
387 1ek0_A Protein (GTP-binding pr 90.5 0.14 4.7E-06 44.1 2.9 22 200-221 5-26 (170)
388 1nrj_B SR-beta, signal recogni 90.5 0.15 5.2E-06 46.2 3.3 25 197-221 11-35 (218)
389 2yyz_A Sugar ABC transporter, 90.4 0.14 4.7E-06 50.7 3.1 25 197-221 28-52 (359)
390 3rlf_A Maltose/maltodextrin im 90.4 0.14 4.7E-06 51.0 3.1 25 197-221 28-52 (381)
391 3q85_A GTP-binding protein REM 90.4 0.13 4.5E-06 44.3 2.7 20 200-219 4-23 (169)
392 3tui_C Methionine import ATP-b 90.4 0.14 4.8E-06 50.6 3.1 25 197-221 53-77 (366)
393 3iqw_A Tail-anchored protein t 90.4 0.28 9.6E-06 48.0 5.3 37 197-233 15-51 (334)
394 3ihw_A Centg3; RAS, centaurin, 90.4 0.14 4.8E-06 45.2 2.9 24 198-221 20-43 (184)
395 1u8z_A RAS-related protein RAL 90.4 0.19 6.5E-06 43.0 3.7 23 199-221 5-27 (168)
396 1z0j_A RAB-22, RAS-related pro 90.4 0.14 4.8E-06 44.0 2.9 23 199-221 7-29 (170)
397 2it1_A 362AA long hypothetical 90.4 0.14 4.8E-06 50.7 3.1 25 197-221 28-52 (362)
398 3fkq_A NTRC-like two-domain pr 90.4 0.26 8.7E-06 49.2 5.1 38 196-233 141-179 (373)
399 2fn4_A P23, RAS-related protei 90.4 0.2 6.7E-06 43.6 3.9 25 197-221 8-32 (181)
400 2gj8_A MNME, tRNA modification 90.4 0.13 4.5E-06 44.8 2.7 23 199-221 5-27 (172)
401 2oze_A ORF delta'; para, walke 90.3 0.2 6.8E-06 48.1 4.2 48 183-233 22-72 (298)
402 3q72_A GTP-binding protein RAD 90.3 0.13 4.4E-06 44.2 2.5 21 200-220 4-24 (166)
403 1g16_A RAS-related protein SEC 90.2 0.15 5E-06 43.9 2.9 23 199-221 4-26 (170)
404 1wms_A RAB-9, RAB9, RAS-relate 90.2 0.15 5.1E-06 44.3 2.9 24 198-221 7-30 (177)
405 2ck3_A ATP synthase subunit al 90.2 0.42 1.4E-05 49.0 6.5 27 197-223 161-188 (510)
406 4akg_A Glutathione S-transfera 90.2 0.99 3.4E-05 56.0 10.8 150 199-365 1268-1452(2695)
407 1z47_A CYSA, putative ABC-tran 90.2 0.14 4.8E-06 50.5 3.0 25 197-221 40-64 (355)
408 2fz4_A DNA repair protein RAD2 90.2 2.5 8.6E-05 38.8 11.5 39 179-222 94-132 (237)
409 2lkc_A Translation initiation 90.1 0.16 5.5E-06 44.1 3.1 25 197-221 7-31 (178)
410 2erx_A GTP-binding protein DI- 90.1 0.14 4.9E-06 44.0 2.7 23 199-221 4-26 (172)
411 1v43_A Sugar-binding transport 90.1 0.15 5.1E-06 50.7 3.1 25 197-221 36-60 (372)
412 2iwr_A Centaurin gamma 1; ANK 90.1 0.13 4.5E-06 44.8 2.5 23 199-221 8-30 (178)
413 3ch4_B Pmkase, phosphomevalona 90.1 0.24 8.1E-06 44.4 4.1 27 196-222 9-35 (202)
414 3d31_A Sulfate/molybdate ABC t 90.1 0.13 4.3E-06 50.7 2.5 25 197-221 25-49 (348)
415 1svi_A GTP-binding protein YSX 90.1 0.17 5.9E-06 44.8 3.3 25 197-221 22-46 (195)
416 1r2q_A RAS-related protein RAB 90.1 0.16 5.3E-06 43.7 2.9 23 199-221 7-29 (170)
417 3c5c_A RAS-like protein 12; GD 90.1 0.15 5.3E-06 45.0 2.9 24 198-221 21-44 (187)
418 1lw7_A Transcriptional regulat 90.0 0.16 5.3E-06 50.6 3.2 26 198-223 170-195 (365)
419 1c9k_A COBU, adenosylcobinamid 90.0 0.13 4.6E-06 45.2 2.4 29 201-233 2-30 (180)
420 1m2o_B GTP-binding protein SAR 90.0 0.16 5.3E-06 45.2 2.9 23 199-221 24-46 (190)
421 1ky3_A GTP-binding protein YPT 89.9 0.2 6.7E-06 43.6 3.5 25 197-221 7-31 (182)
422 1z0f_A RAB14, member RAS oncog 89.8 0.16 5.6E-06 44.0 2.9 24 198-221 15-38 (179)
423 4gzl_A RAS-related C3 botulinu 89.8 0.19 6.4E-06 45.2 3.3 41 179-221 13-53 (204)
424 2cjw_A GTP-binding protein GEM 89.8 0.17 6E-06 45.0 3.0 22 199-220 7-28 (192)
425 3def_A T7I23.11 protein; chlor 89.8 0.27 9.2E-06 46.3 4.5 25 197-221 35-59 (262)
426 2hxs_A RAB-26, RAS-related pro 89.7 0.15 5E-06 44.4 2.5 24 198-221 6-29 (178)
427 1h65_A Chloroplast outer envel 89.7 0.27 9.4E-06 46.4 4.5 26 196-221 37-62 (270)
428 3pqc_A Probable GTP-binding pr 89.7 0.2 6.8E-06 44.2 3.3 25 197-221 22-46 (195)
429 1g29_1 MALK, maltose transport 89.6 0.16 5.6E-06 50.4 3.0 25 197-221 28-52 (372)
430 3kkq_A RAS-related protein M-R 89.6 0.17 5.9E-06 44.2 2.9 24 198-221 18-41 (183)
431 2cxx_A Probable GTP-binding pr 89.6 0.16 5.6E-06 44.7 2.7 22 200-221 3-24 (190)
432 3bc1_A RAS-related protein RAB 89.6 0.17 5.9E-06 44.5 2.9 24 198-221 11-34 (195)
433 1upt_A ARL1, ADP-ribosylation 89.6 0.23 7.9E-06 42.7 3.6 24 198-221 7-30 (171)
434 1oxx_K GLCV, glucose, ABC tran 89.6 0.12 4.1E-06 51.0 1.9 25 197-221 30-54 (353)
435 4f4c_A Multidrug resistance pr 89.6 1.3 4.6E-05 51.7 11.0 25 197-221 443-467 (1321)
436 4dsu_A GTPase KRAS, isoform 2B 89.6 0.18 6.1E-06 44.3 2.9 23 199-221 5-27 (189)
437 2y8e_A RAB-protein 6, GH09086P 89.5 0.18 6.1E-06 43.8 2.9 23 199-221 15-37 (179)
438 3tw8_B RAS-related protein RAB 89.5 0.19 6.4E-06 43.7 3.0 26 196-221 7-32 (181)
439 2orv_A Thymidine kinase; TP4A 89.5 0.65 2.2E-05 42.4 6.6 108 198-314 19-126 (234)
440 2bme_A RAB4A, RAS-related prot 89.5 0.18 6.1E-06 44.3 2.9 24 198-221 10-33 (186)
441 3e2i_A Thymidine kinase; Zn-bi 89.5 0.47 1.6E-05 42.9 5.6 105 197-312 27-136 (219)
442 3dz8_A RAS-related protein RAB 89.5 0.19 6.5E-06 44.5 3.0 24 198-221 23-46 (191)
443 2oil_A CATX-8, RAS-related pro 89.4 0.18 6.2E-06 44.6 2.9 24 198-221 25-48 (193)
444 1mh1_A RAC1; GTP-binding, GTPa 89.4 0.18 6.3E-06 44.1 2.9 23 199-221 6-28 (186)
445 3bwd_D RAC-like GTP-binding pr 89.4 0.19 6.4E-06 43.9 2.9 23 199-221 9-31 (182)
446 3t5g_A GTP-binding protein RHE 89.3 0.19 6.5E-06 43.9 2.9 24 198-221 6-29 (181)
447 3cbq_A GTP-binding protein REM 89.3 0.14 4.8E-06 45.7 2.0 23 197-219 22-44 (195)
448 2efe_B Small GTP-binding prote 89.3 0.19 6.6E-06 43.8 2.9 24 198-221 12-35 (181)
449 1f6b_A SAR1; gtpases, N-termin 89.3 0.16 5.4E-06 45.5 2.4 23 198-220 25-47 (198)
450 3gd7_A Fusion complex of cysti 89.3 0.19 6.4E-06 50.3 3.1 25 197-221 46-70 (390)
451 2atv_A RERG, RAS-like estrogen 89.3 0.19 6.5E-06 44.7 2.9 24 198-221 28-51 (196)
452 2a9k_A RAS-related protein RAL 89.3 0.19 6.6E-06 43.9 2.9 24 198-221 18-41 (187)
453 3thx_B DNA mismatch repair pro 89.2 0.58 2E-05 52.1 7.2 24 197-220 672-695 (918)
454 1pui_A ENGB, probable GTP-bind 89.2 0.13 4.4E-06 46.4 1.7 24 197-220 25-48 (210)
455 1gwn_A RHO-related GTP-binding 89.1 0.19 6.6E-06 45.2 2.9 24 198-221 28-51 (205)
456 3t1o_A Gliding protein MGLA; G 89.1 0.17 5.9E-06 44.7 2.5 25 198-222 14-38 (198)
457 2g6b_A RAS-related protein RAB 89.1 0.2 6.9E-06 43.6 2.9 24 198-221 10-33 (180)
458 2ew1_A RAS-related protein RAB 89.1 0.2 6.7E-06 45.1 2.9 24 198-221 26-49 (201)
459 3la6_A Tyrosine-protein kinase 89.1 0.58 2E-05 44.6 6.3 52 182-233 74-128 (286)
460 3clv_A RAB5 protein, putative; 89.0 0.2 6.9E-06 44.5 2.9 24 198-221 7-30 (208)
461 2bov_A RAla, RAS-related prote 89.0 0.2 7E-06 44.7 2.9 24 198-221 14-37 (206)
462 1f2t_A RAD50 ABC-ATPase; DNA d 89.0 0.24 8.3E-06 42.1 3.2 25 198-222 23-47 (149)
463 2fg5_A RAB-22B, RAS-related pr 88.9 0.21 7E-06 44.3 2.9 24 198-221 23-46 (192)
464 1xx6_A Thymidine kinase; NESG, 88.9 0.46 1.6E-05 42.3 5.2 108 197-314 7-118 (191)
465 3oes_A GTPase rhebl1; small GT 88.9 0.21 7E-06 44.7 2.9 25 197-221 23-47 (201)
466 1zd9_A ADP-ribosylation factor 88.9 0.21 7.2E-06 44.1 2.9 23 199-221 23-45 (188)
467 1byi_A Dethiobiotin synthase; 88.9 0.39 1.3E-05 43.8 4.8 34 199-232 2-36 (224)
468 2obl_A ESCN; ATPase, hydrolase 88.8 0.22 7.5E-06 49.1 3.1 27 197-223 70-96 (347)
469 2fh5_B SR-beta, signal recogni 88.8 0.21 7.3E-06 45.1 2.9 24 198-221 7-30 (214)
470 3reg_A RHO-like small GTPase; 88.8 0.22 7.4E-06 44.2 2.9 24 198-221 23-46 (194)
471 2gza_A Type IV secretion syste 88.8 0.17 6E-06 50.1 2.4 35 198-233 175-209 (361)
472 1vg8_A RAS-related protein RAB 88.8 0.26 9E-06 44.1 3.5 25 197-221 7-31 (207)
473 2gf9_A RAS-related protein RAB 88.7 0.22 7.5E-06 44.0 2.9 24 198-221 22-45 (189)
474 3ez2_A Plasmid partition prote 88.7 0.71 2.4E-05 46.3 7.0 29 196-224 106-135 (398)
475 2a5j_A RAS-related protein RAB 88.7 0.22 7.5E-06 44.1 2.9 24 198-221 21-44 (191)
476 2g3y_A GTP-binding protein GEM 88.7 0.21 7.1E-06 45.4 2.7 23 198-220 37-59 (211)
477 2gf0_A GTP-binding protein DI- 88.6 0.22 7.7E-06 44.1 2.9 24 198-221 8-31 (199)
478 2qnr_A Septin-2, protein NEDD5 88.6 0.19 6.6E-06 48.4 2.6 21 200-220 20-40 (301)
479 3tkl_A RAS-related protein RAB 88.6 0.23 7.8E-06 44.0 2.9 24 198-221 16-39 (196)
480 3cmw_A Protein RECA, recombina 88.6 0.34 1.2E-05 57.3 5.0 52 182-233 366-418 (1706)
481 1z06_A RAS-related protein RAB 88.5 0.23 7.9E-06 43.8 2.9 24 198-221 20-43 (189)
482 4bas_A ADP-ribosylation factor 88.5 0.25 8.6E-06 43.8 3.1 25 197-221 16-40 (199)
483 1wcv_1 SOJ, segregation protei 88.5 0.32 1.1E-05 45.5 4.0 37 197-233 5-42 (257)
484 2p5s_A RAS and EF-hand domain 88.4 0.23 8E-06 44.2 2.9 25 197-221 27-51 (199)
485 2woo_A ATPase GET3; tail-ancho 88.4 0.49 1.7E-05 46.2 5.4 37 197-233 18-54 (329)
486 3cmu_A Protein RECA, recombina 88.3 0.54 1.8E-05 56.4 6.5 57 177-233 361-418 (2050)
487 1x3s_A RAS-related protein RAB 88.3 0.24 8.3E-06 43.7 2.9 24 198-221 15-38 (195)
488 3cmw_A Protein RECA, recombina 88.3 0.36 1.2E-05 57.0 5.0 52 182-233 715-767 (1706)
489 1zbd_A Rabphilin-3A; G protein 88.2 0.23 7.9E-06 44.3 2.7 24 198-221 8-31 (203)
490 4b3f_X DNA-binding protein smu 88.1 0.52 1.8E-05 50.8 5.8 39 182-224 193-231 (646)
491 2bcg_Y Protein YP2, GTP-bindin 88.1 0.25 8.5E-06 44.3 2.9 24 198-221 8-31 (206)
492 3lxx_A GTPase IMAP family memb 88.0 0.29 9.8E-06 45.3 3.3 25 197-221 28-52 (239)
493 1ihu_A Arsenical pump-driving 88.0 0.41 1.4E-05 50.9 4.9 37 197-233 7-43 (589)
494 1u0l_A Probable GTPase ENGC; p 88.0 0.34 1.2E-05 46.7 3.9 33 184-221 160-192 (301)
495 2b6h_A ADP-ribosylation factor 88.0 0.23 7.9E-06 44.1 2.5 23 198-220 29-51 (192)
496 1ega_A Protein (GTP-binding pr 88.0 0.28 9.4E-06 47.3 3.2 25 197-221 7-31 (301)
497 1zj6_A ADP-ribosylation factor 87.9 0.25 8.5E-06 43.5 2.7 25 197-221 15-39 (187)
498 1moz_A ARL1, ADP-ribosylation 87.9 0.24 8.2E-06 43.3 2.6 24 197-220 17-40 (183)
499 2atx_A Small GTP binding prote 87.9 0.26 9E-06 43.6 2.9 24 198-221 18-41 (194)
500 2fv8_A H6, RHO-related GTP-bin 87.9 0.26 9E-06 44.3 2.9 23 199-221 26-48 (207)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.3e-44 Score=317.18 Aligned_cols=166 Identities=43% Similarity=0.696 Sum_probs=141.2
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
.||||||+|+|++++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|+|+||++|+||++||.+|+
T Consensus 9 yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~ 88 (176)
T 3jrn_A 9 YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIM 88 (176)
T ss_dssp EEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHH
T ss_pred CeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHH
Confidence 38999999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred hhhcccCceEEeEEEEeccccccccCCChHHHHHHHHHhhhhchhhHHHHHHHhHhhhcccCccccCCCcchhhhHHHHH
Q 008685 80 DCRKEYAQIVIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSVKLQTWRNALREAASLSGFHSLNIRPESKLVKEVVN 159 (557)
Q Consensus 80 ~~~~~~~~~v~Pv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~ 159 (557)
+|.++++++|+||||+|+|++||+|+|+|+++|.+++.+ ...+++++|+.||+++++++|+++. . .|+++|++|++
T Consensus 89 ~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~-~e~~~i~~Iv~ 164 (176)
T 3jrn_A 89 DFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-D-DDSKLVDKIAN 164 (176)
T ss_dssp HHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-S-CHHHHHHHHHH
T ss_pred hhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-C-CHHHHHHHHHH
Confidence 999888999999999999999999999999999999987 5567899999999999999999994 3 49999999999
Q ss_pred hhhcccccccC
Q 008685 160 HILKRLATVFP 170 (557)
Q Consensus 160 ~~~~~~~~~~p 170 (557)
++.+.++..+|
T Consensus 165 ~v~~~l~~~~~ 175 (176)
T 3jrn_A 165 EISNKKTIYAT 175 (176)
T ss_dssp HHHTTCC----
T ss_pred HHHHHhcCCCC
Confidence 99999987654
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-41 Score=364.97 Aligned_cols=296 Identities=18% Similarity=0.164 Sum_probs=225.9
Q ss_pred cccchhHHHHHHhhccc-CCCcEEEEEeccCCCchhHHHHHHHH----HhhccCCceEEEEeccccccCCCChHHHHHHH
Q 008685 178 VGVESRVEEIESLLGVE-WEDVYTLGIWGIGGIGKTTIAKAIFE----KISSDFEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 178 vGR~~~l~~l~~~L~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
+||+.++++|.++|... ..+.++|+|+||||+||||||+++|+ ++..+|+.++|+. ++... ..+...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~--~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTA--PKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCS--TTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCC--CCCHHHHHHHH
Confidence 49999999999999754 34579999999999999999999997 5788899999995 33211 13578888899
Q ss_pred HHHHhcCCc---c-c--cC-----HHHHHHHHccC-ceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhhhcc
Q 008685 253 LSKLLQDNN---V-I--LN-----IALSFRRLSRR-KVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVLRNW 320 (557)
Q Consensus 253 l~~~~~~~~---~-~--~~-----~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~~~ 320 (557)
+..+..... . . .. ...+++.|.++ |+||||||||+..++ .+.. .+||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988876522 1 1 11 57788889996 999999999998876 3322 2799999999999988776
Q ss_pred c-cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHh-hhcCC
Q 008685 321 G-VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINK-LKSIL 398 (557)
Q Consensus 321 ~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~-l~~~~ 398 (557)
+ ....|+|++|+.++|++||.++++.... .+.+.+.+.+|+++|+|+||||+.+|+.++.+.. +|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 5 4468999999999999999999876532 3566788999999999999999999999987743 23333322 22212
Q ss_pred hhhHHHHHHHhhcCCChhhHHHHh-----------hhhcccCCCCHHHHHHHHHhc--CCch-----------hhcHHHH
Q 008685 399 HPSIQEILKISYDGLDDKEKNIFL-----------DVACFFKGEDVYSVMKFLDAS--GFYP-----------EIGISVL 454 (557)
Q Consensus 399 ~~~i~~~l~~s~~~L~~~~k~~l~-----------~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L 454 (557)
...+..++..||+.||+..|.||+ +||+||++++.+ ..+|.++ |+.. ..++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 334555566666666666666666 999999998776 6788887 5542 2369999
Q ss_pred hhCCCeEEcc---CCeEEcCHHHHHHHHHHHhhhc
Q 008685 455 VDKSLIVISN---NDRITMHDLLQELGRDIVLQES 486 (557)
Q Consensus 455 ~~~sLl~~~~---~~~~~mH~lvr~~a~~~~~~e~ 486 (557)
+++||++... ..+|+|||+||++|++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999754 3479999999999999887765
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=8e-43 Score=312.68 Aligned_cols=165 Identities=39% Similarity=0.735 Sum_probs=155.6
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
.||||||+|+|++.+|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||++|++|+||++||.+|+
T Consensus 36 yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~ 115 (204)
T 3ozi_A 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIV 115 (204)
T ss_dssp CCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHH
T ss_pred CeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHH
Confidence 48999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhcc-cCceEEeEEEEeccccccccCCChHHHHHHHHHhhhhchhhHHHHHHHhHhhhcccCccccCCCcchhhhHHHH
Q 008685 80 DCRKE-YAQIVIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSVKLQTWRNALREAASLSGFHSLNIRPESKLVKEVV 158 (557)
Q Consensus 80 ~~~~~-~~~~v~Pv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~ 158 (557)
+|.++ .+++|+||||+|+|++||+|+|.|+++|.+++.++. .+++++|+.||+++++++||++.....+++++++|+
T Consensus 116 e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv 193 (204)
T 3ozi_A 116 RRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVS 193 (204)
T ss_dssp HHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHH
T ss_pred HHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHH
Confidence 99864 578999999999999999999999999999998774 368999999999999999999998877889999999
Q ss_pred Hhhhccccc
Q 008685 159 NHILKRLAT 167 (557)
Q Consensus 159 ~~~~~~~~~ 167 (557)
+++.++++.
T Consensus 194 ~di~~kl~~ 202 (204)
T 3ozi_A 194 ADIWSHISK 202 (204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999987754
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-38 Score=370.27 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=236.9
Q ss_pred cCCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH---hhccCCceEEEEeccccccCCCCh
Q 008685 169 FPCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK---ISSDFEGSCFLQNVREESVRPGGL 245 (557)
Q Consensus 169 ~p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 245 (557)
.|..+ +.||||++++++|.++|....++.++|+|+||||+||||||++++++ ...+|...+|+..+.... ....
T Consensus 119 ~p~~~-~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 195 (1249)
T 3sfz_A 119 VPQRP-VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGL 195 (1249)
T ss_dssp CCCCC-SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHH
T ss_pred CCCCC-ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHH
Confidence 34444 78999999999999999766567899999999999999999999987 355677666444443321 1122
Q ss_pred HHHHHHHHHHHhcCCcc----ccC----HHHHHHHHccC--ceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 246 ACLQLKLLSKLLQDNNV----ILN----IALSFRRLSRR--KVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~----~~~----~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
......+...+...... ..+ .+.++..+.++ |+||||||+|+..++..+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 33344455555443221 112 34445555555 999999999998876654 67999999999998
Q ss_pred hhhc-cccceEEEccc-CCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHHHHHHh
Q 008685 316 VLRN-WGVKKIYEMEA-LEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWKSAINK 393 (557)
Q Consensus 316 ~~~~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~~~l~~ 393 (557)
++.. .+....+++++ |+.+||++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.++ ..|...+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8744 45567899996 99999999999887433 234467799999999999999999999998765 458887777
Q ss_pred hhcCC-----------hhhHHHHHHHhhcCCChhhHHHHhhhhcccCC--CCHHHHHHHHHhcCCchhhcHHHHhhCCCe
Q 008685 394 LKSIL-----------HPSIQEILKISYDGLDDKEKNIFLDVACFFKG--EDVYSVMKFLDASGFYPEIGISVLVDKSLI 460 (557)
Q Consensus 394 l~~~~-----------~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl 460 (557)
+.... ...+..+|..||+.|++++|.||++||+||++ ++.+.+..+|..++...+.++++|+++||+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 65432 24699999999999999999999999999987 578899999988777788899999999999
Q ss_pred EEccCCe---EEcCHHHHHHHHHHHhhh
Q 008685 461 VISNNDR---ITMHDLLQELGRDIVLQE 485 (557)
Q Consensus 461 ~~~~~~~---~~mH~lvr~~a~~~~~~e 485 (557)
+...++. |+||+++|+++++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876664 999999999999987765
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=325.89 Aligned_cols=324 Identities=21% Similarity=0.255 Sum_probs=237.0
Q ss_pred ccCCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh---hccCC-ceEEEEeccccccCCC
Q 008685 168 VFPCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI---SSDFE-GSCFLQNVREESVRPG 243 (557)
Q Consensus 168 ~~p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~ 243 (557)
..|..+ +.||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ...|+ .++|+. +...
T Consensus 118 ~~P~~~-~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~----- 190 (591)
T 1z6t_A 118 GVPQRP-VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ----- 190 (591)
T ss_dssp TCCCCC-SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----
T ss_pred CCCCCC-CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----
Confidence 344444 789999999999999997655568999999999999999999999764 66786 566665 3321
Q ss_pred ChHHHHHH---HHHHHhcCCc----cccC----HHHHHHHHcc--CceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEE
Q 008685 244 GLACLQLK---LLSKLLQDNN----VILN----IALSFRRLSR--RKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIIT 310 (557)
Q Consensus 244 ~~~~l~~~---ll~~~~~~~~----~~~~----~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiT 310 (557)
+...+... +...+..... ...+ ...+...+.+ +++||||||+|+...++.+ +++++||||
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvT 263 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLT 263 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEE
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEE
Confidence 12222222 2333331111 1112 3455555655 7899999999998766543 678999999
Q ss_pred eCChhhhhccccceEEEc---ccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHH
Q 008685 311 TRDKQVLRNWGVKKIYEM---EALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVW 387 (557)
Q Consensus 311 sR~~~~~~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w 387 (557)
||+..++..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|
T Consensus 264 sR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w 338 (591)
T 1z6t_A 264 TRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRW 338 (591)
T ss_dssp ESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCH
T ss_pred CCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhH
Confidence 99998766543 234444 5899999999999987542 122246789999999999999999999997754 358
Q ss_pred HHHHHhhhcCC-----------hhhHHHHHHHhhcCCChhhHHHHhhhhcccCC--CCHHHHHHHHHhcCCchhhcHHHH
Q 008685 388 KSAINKLKSIL-----------HPSIQEILKISYDGLDDKEKNIFLDVACFFKG--EDVYSVMKFLDASGFYPEIGISVL 454 (557)
Q Consensus 388 ~~~l~~l~~~~-----------~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L 454 (557)
...+..+.... ..++..++..||+.|+++.|.||+++|+||++ ++.+.+..+|..+.......++.|
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L 418 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEF 418 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHH
Confidence 77777665322 25799999999999999999999999999876 677888889977655667789999
Q ss_pred hhCCCeEEccC---CeEEcCHHHHHHHHHHHhhhc--------------------CCCCCcccccCchhHHHHhhcCcc
Q 008685 455 VDKSLIVISNN---DRITMHDLLQELGRDIVLQES--------------------VNPGNRSRLWHHEDIYGVLTYNMV 510 (557)
Q Consensus 455 ~~~sLl~~~~~---~~~~mH~lvr~~a~~~~~~e~--------------------~~~~~~~~l~~~~~~~~~l~~~~~ 510 (557)
+++||++...+ ..|+||+++|+++++....+. ..+..+..+|.+..+.+++.....
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 99999986543 269999999999998732110 122344455666677777776654
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-35 Score=323.26 Aligned_cols=275 Identities=17% Similarity=0.125 Sum_probs=209.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH--hhccCCc-eEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK--ISSDFEG-SCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
+..|||+.++++|.++|... ++.++|+|+||||+||||||++++++ +..+|+. ++|+. ++. ..+...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~----~~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN----CNSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC----SSSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC----CCCHHHHHHH
Confidence 45699999999999998753 34789999999999999999999974 6788997 55655 433 3334455555
Q ss_pred HHHHHhcC-------Ccc----ccC----HHHHHHHH---ccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCC
Q 008685 252 LLSKLLQD-------NNV----ILN----IALSFRRL---SRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRD 313 (557)
Q Consensus 252 ll~~~~~~-------~~~----~~~----~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~ 313 (557)
+...+... ... ..+ .+.+.+.+ .++|+||||||+|+.+.|+.+ .+||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccC
Confidence 44432211 000 001 34455544 579999999999999888876 269999999999
Q ss_pred hhhhhccccceEEEcc------cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCC--CHH
Q 008685 314 KQVLRNWGVKKIYEME------ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGR--EKE 385 (557)
Q Consensus 314 ~~~~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~--~~~ 385 (557)
+.++..+.....+.|+ +|+.+||++||+... +.. ..+...++ |+|+||||+++|+.|+.+ +..
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 9887544333456666 899999999999984 221 12333343 999999999999999876 677
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHhhcCCChhh-HHHHhhhhcccCC--CCHHHHHHHHHhcCC-chhhcHHHHhhCCCeE
Q 008685 386 VWKSAINKLKSILHPSIQEILKISYDGLDDKE-KNIFLDVACFFKG--EDVYSVMKFLDASGF-YPEIGISVLVDKSLIV 461 (557)
Q Consensus 386 ~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-k~~l~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sLl~ 461 (557)
.|... ....+..+|+.||+.|++++ |.||++||+||++ ++.+.+..+|.+++. ....++++|+++||++
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 78653 35679999999999999999 9999999999987 466788999988753 4667899999999999
Q ss_pred Ecc-CCeEEcCHHHHHHH
Q 008685 462 ISN-NDRITMHDLLQELG 478 (557)
Q Consensus 462 ~~~-~~~~~mH~lvr~~a 478 (557)
..+ .++|+||+++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 863 56899999998854
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=3.2e-28 Score=214.85 Aligned_cols=113 Identities=20% Similarity=0.396 Sum_probs=106.3
Q ss_pred CeEEEecccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
.||||||+++| +..|+.+|+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||..|+
T Consensus 21 ~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~ 99 (154)
T 3h16_A 21 HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLF 99 (154)
T ss_dssp EEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHT
T ss_pred ceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHH
Confidence 48999999999 45799999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhcccCceEEeEEEEeccccccccCCChHHHHHH
Q 008685 80 DCRKEYAQIVIPVFYRVDPSDVRNQTGSFGDSFSK 114 (557)
Q Consensus 80 ~~~~~~~~~v~Pv~~~v~p~~vr~~~g~~~~~~~~ 114 (557)
++...++++|+||||+|+|++|++|.|.|++.|..
T Consensus 100 ~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 100 QLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp CCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 98877788999999999999999999999876553
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=9.1e-25 Score=189.57 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred CeEEEecccccccCchHHHHHHHHhh--CCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQ--KSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLK 77 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~ 77 (557)
.||||||+++|+ .||.+|+++|++ .|+++|+|+ |+.||+.+.++|.+||++|+++|+|+|++|++|.||..|+..
T Consensus 11 YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~ 88 (146)
T 3ub2_A 11 YDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQ 88 (146)
T ss_dssp EEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHH
T ss_pred ceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHH
Confidence 499999999994 589999999998 699999998 999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCceEEeEEEEeccccccccCCChH-HHHHHHHHhhhhchhhHHHHHHHh
Q 008685 78 ILDCRKEYAQIVIPVFYRVDPSDVRNQTGSFG-DSFSKLEERFKENSVKLQTWRNAL 133 (557)
Q Consensus 78 ~~~~~~~~~~~v~Pv~~~v~p~~vr~~~g~~~-~~~~~~~~~~~~~~~~~~~w~~al 133 (557)
|+.+......+||||||+|+++++......+. ..+......+....+.+.+|++++
T Consensus 89 al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 89 ALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99887433346789999998766644322110 001123344445555677777664
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.83 E-value=1e-21 Score=173.31 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=86.9
Q ss_pred CeEEEecccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCcchHHHHHHHH-hhceEEEEecCCccCchhhHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASHLFSALSQK--SIETFIDD-QLNRGDEISESLMNAIE-ASAISLIIFSEGYASSRWCLDELL 76 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~ai~-~s~~~i~v~S~~y~~S~~c~~El~ 76 (557)
.||||||+++| ..||.+|.++|+++ |+++|+|+ |+.||+.+.++|.++|+ +|+++|+|+|++|++|.||..|+.
T Consensus 17 yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~ 94 (160)
T 2js7_A 17 FDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTK 94 (160)
T ss_dssp EEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHH
T ss_pred eEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHH
Confidence 49999999999 67999999999985 69999998 99999999999999999 799999999999999999999999
Q ss_pred HHHhhh-cccCceEEeEEEEecc
Q 008685 77 KILDCR-KEYAQIVIPVFYRVDP 98 (557)
Q Consensus 77 ~~~~~~-~~~~~~v~Pv~~~v~p 98 (557)
.|+.+. .+.+++||||||+.-+
T Consensus 95 ~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 95 FALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHccCCCEEEEEEEcccc
Confidence 999875 3445689999998554
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.82 E-value=9.8e-22 Score=171.72 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=86.2
Q ss_pred CeEEEecccccccCchHHH-HHHHHhhC--CCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASH-LFSALSQK--SIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELL 76 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~ 76 (557)
.||||||+++|+ .||.+ |.+.|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||..|+.
T Consensus 6 yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~ 83 (149)
T 1fyx_A 6 YDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELD 83 (149)
T ss_dssp EEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSC
T ss_pred ceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHH
Confidence 499999999994 79997 99999987 99999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhh-cccCceEEeEEEE-ecc
Q 008685 77 KILDCR-KEYAQIVIPVFYR-VDP 98 (557)
Q Consensus 77 ~~~~~~-~~~~~~v~Pv~~~-v~p 98 (557)
.|+.+. ...+.+||||||. +++
T Consensus 84 ~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 84 FSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp CSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHhcCCCEEEEEEecCCCh
Confidence 987543 4566789999986 444
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.81 E-value=4.3e-21 Score=171.92 Aligned_cols=93 Identities=23% Similarity=0.408 Sum_probs=81.3
Q ss_pred CeEEEecccccccCchHHH-HHHHHhh--CCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHH
Q 008685 1 MMFFLSFRGEDTRDNFASH-LFSALSQ--KSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELL 76 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~ 76 (557)
.||||||+++| ..||.+ |.+.|++ +|+++|+|+ |+.||+.+.++|.+||++|+++|+|+|++|+.|.||..|+.
T Consensus 36 yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~ 113 (178)
T 2j67_A 36 FHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFY 113 (178)
T ss_dssp EEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHH
T ss_pred ceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHH
Confidence 49999999999 579986 9999998 899999998 99999999999999999999999999999999999999999
Q ss_pred HHHhhh-cccCceEEeEEEE
Q 008685 77 KILDCR-KEYAQIVIPVFYR 95 (557)
Q Consensus 77 ~~~~~~-~~~~~~v~Pv~~~ 95 (557)
.|+.+. .+.+++||||||+
T Consensus 114 ~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 114 FAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp HTTCC-------CEEEEESS
T ss_pred HHHHHHHhcCCCEEEEEEec
Confidence 998654 4456789999987
No 12
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.80 E-value=1.1e-18 Score=176.42 Aligned_cols=287 Identities=14% Similarity=0.125 Sum_probs=173.2
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccc--cCCCChHH
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREES--VRPGGLAC 247 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~ 247 (557)
+..+ ..|+||+.+++.|.+++..+ +++.|+|++|+|||+|+++++++. . .+|+. ..... ........
T Consensus 8 ~~~~-~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 8 KTRR-EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITREE 76 (350)
T ss_dssp CCSG-GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHHH
T ss_pred CCCh-HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHHH
Confidence 3344 78999999999999998642 689999999999999999999875 1 45554 22111 00113333
Q ss_pred HHHHHHHHHhc-----------------CCcc-ccCHHH----HHHHHcc-CceEEEEcCCCCHH--------HHHHHhc
Q 008685 248 LQLKLLSKLLQ-----------------DNNV-ILNIAL----SFRRLSR-RKVLIVFDDVSCFN--------QIESLIG 296 (557)
Q Consensus 248 l~~~ll~~~~~-----------------~~~~-~~~~~~----l~~~l~~-k~~LlVlDdv~~~~--------~~~~l~~ 296 (557)
+...+...+.. .... ..+... +.+.... ++++|||||++... .+..++.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 43333332211 0000 112222 3333322 48999999995422 2222222
Q ss_pred cCCCCCCceEEEEEeCChhhhhc-----------cc-cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 008685 297 SLDWFTPRSTIIITTRDKQVLRN-----------WG-VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEY 364 (557)
Q Consensus 297 ~l~~~~~~~~IiiTsR~~~~~~~-----------~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 364 (557)
.+....++.++|+|++....... .+ ....+++.+|+.+|+.+++.......... ...+.+..+++.
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~ 234 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVEL 234 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 21111257889999887543211 11 13579999999999999998754222111 125678899999
Q ss_pred cCCCchhhHhhhhhhcC-CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCC---ChhhHHHHhhhhcccCCCCHHHHHHHH
Q 008685 365 AQGVPLALKVLGCFLFG-REKEVWKSAINKLKSILHPSIQEILKISYDGL---DDKEKNIFLDVACFFKGEDVYSVMKFL 440 (557)
Q Consensus 365 ~~G~PLal~~~a~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~l~~la~f~~~~~~~~l~~~~ 440 (557)
|+|+|+++..++..+.. .+...+. ..+ .+.+...+...+..+ ++..+.++..+|+ ...+...+...+
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~ 305 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAM---KRT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYL 305 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHH---HHH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHH---HHH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999875422 2222211 111 111222222233333 7889999999998 345666666655
Q ss_pred Hhc--CCc---hhhcHHHHhhCCCeEEccCCeEE-cCHHHHHHHH
Q 008685 441 DAS--GFY---PEIGISVLVDKSLIVISNNDRIT-MHDLLQELGR 479 (557)
Q Consensus 441 ~~~--~~~---~~~~l~~L~~~sLl~~~~~~~~~-mH~lvr~~a~ 479 (557)
... +.. ...+++.|.+.+||... ++.|. .|++++++.+
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 321 222 34579999999999886 46665 4889988764
No 13
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=164.79 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=85.2
Q ss_pred CeEEEecccccc---------cCchHHHHHH-HHh-hCCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCcc-C
Q 008685 1 MMFFLSFRGEDT---------RDNFASHLFS-ALS-QKSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYA-S 67 (557)
Q Consensus 1 ~dvFis~~~~d~---------~~~~~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~-~ 67 (557)
.||||||+++|+ ++.||.+|.. .|+ +.|+++|+|+ |+.||+.+.++|.+||++|+++|+|+|++|+ .
T Consensus 3 yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~ 82 (159)
T 1t3g_A 3 YDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVR 82 (159)
T ss_dssp BSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHT
T ss_pred ceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhc
Confidence 499999999996 3568888665 699 7999999998 9999999999999999999999999999997 9
Q ss_pred chhhHHHHHHHHhhh-cccCceEEeEEEEe
Q 008685 68 SRWCLDELLKILDCR-KEYAQIVIPVFYRV 96 (557)
Q Consensus 68 S~~c~~El~~~~~~~-~~~~~~v~Pv~~~v 96 (557)
|.||..|+..|+.+. .+++..||||++.-
T Consensus 83 S~wc~~El~~a~~~~~~~~~~~vI~I~~~~ 112 (159)
T 1t3g_A 83 RGWSIFELETRLRNMLVTGEIKVILIECSE 112 (159)
T ss_dssp TTTHHHHHSHHHHHHHHTTSSEEEEEECSC
T ss_pred ChHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 999999999999876 55678999998763
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=3.7e-18 Score=172.88 Aligned_cols=283 Identities=15% Similarity=0.157 Sum_probs=169.1
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccc-cCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREES-VRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll 253 (557)
..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++.... ..+|+. ..... ............+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCHHHHHHHHH
Confidence 789999999999999 753 58999999999999999999988643 245554 22210 00112233333322
Q ss_pred HHHh-------------cCC----------c------cccCHHHHHHHHcc---CceEEEEcCCCCHH-----HHHHHhc
Q 008685 254 SKLL-------------QDN----------N------VILNIALSFRRLSR---RKVLIVFDDVSCFN-----QIESLIG 296 (557)
Q Consensus 254 ~~~~-------------~~~----------~------~~~~~~~l~~~l~~---k~~LlVlDdv~~~~-----~~~~l~~ 296 (557)
..+. ... . .......+.+.+.. ++++|||||++... .+..++.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHH
Confidence 2221 000 0 01123444444432 48999999994421 2222222
Q ss_pred cCCCCCCceEEEEEeCChhhhhc-----------ccc-ceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 008685 297 SLDWFTPRSTIIITTRDKQVLRN-----------WGV-KKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEY 364 (557)
Q Consensus 297 ~l~~~~~~~~IiiTsR~~~~~~~-----------~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 364 (557)
.+....++.++|+|++....... .+. ...+++.+|+.+|+.+++............ + ...|++.
T Consensus 163 ~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~-~~~i~~~ 238 (357)
T 2fna_A 163 YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---D-YEVVYEK 238 (357)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---C-HHHHHHH
T ss_pred HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC---c-HHHHHHH
Confidence 21111247889999997643211 111 367999999999999999875432121221 1 2789999
Q ss_pred cCCCchhhHhhhhhhcC-CCHHHHHHHHHhhhcCChhhHHHHHHHhh---cCCChhhHHHHhhhhcccCCCCHHHHHHHH
Q 008685 365 AQGVPLALKVLGCFLFG-REKEVWKSAINKLKSILHPSIQEILKISY---DGLDDKEKNIFLDVACFFKGEDVYSVMKFL 440 (557)
Q Consensus 365 ~~G~PLal~~~a~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~---~~L~~~~k~~l~~la~f~~~~~~~~l~~~~ 440 (557)
|+|+|+++..++..+.. .+...|.. .+.......+..-+...+ ..|++..+.++..+|+ . . +...+...+
T Consensus 239 t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~ 312 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRAL 312 (357)
T ss_dssp HCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHH
Confidence 99999999999877532 23332321 111100111222222111 1688899999999998 3 3 666666543
Q ss_pred H-hcC--C---chhhcHHHHhhCCCeEEccCCeEE-cCHHHHHHH
Q 008685 441 D-ASG--F---YPEIGISVLVDKSLIVISNNDRIT-MHDLLQELG 478 (557)
Q Consensus 441 ~-~~~--~---~~~~~l~~L~~~sLl~~~~~~~~~-mH~lvr~~a 478 (557)
. ..+ . ....+++.|++.+||...+ +.|+ .|++++++.
T Consensus 313 ~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 313 ELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 2 123 2 2356799999999999874 5665 689999864
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.71 E-value=2.9e-16 Score=162.29 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=170.0
Q ss_pred CCccccchhHHHHHHhh-cc--cC--CCcEEEEE--eccCCCchhHHHHHHHHHhhcc-----CCc-eEEEEeccccccC
Q 008685 175 NQLVGVESRVEEIESLL-GV--EW--EDVYTLGI--WGIGGIGKTTIAKAIFEKISSD-----FEG-SCFLQNVREESVR 241 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L-~~--~~--~~~~~i~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~-~~~~~~~~~~~~~ 241 (557)
..|+||+.++++|.+.+ .. .. ...+.+.| +|++|+|||+|++++++..... +.. .+|+. .. .
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~- 96 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF---N- 96 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG---G-
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CC---C-
Confidence 77999999999999988 43 11 23456777 9999999999999999887553 222 33443 11 1
Q ss_pred CCChHHHHHHHHHHHhcCCcccc-C----HHHHHHHHc--cCceEEEEcCCCCH--------HHHHHHhccCCCC---C-
Q 008685 242 PGGLACLQLKLLSKLLQDNNVIL-N----IALSFRRLS--RRKVLIVFDDVSCF--------NQIESLIGSLDWF---T- 302 (557)
Q Consensus 242 ~~~~~~l~~~ll~~~~~~~~~~~-~----~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~l~~~---~- 302 (557)
......+...++..+........ + ...+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 34556677777777654321111 1 334444443 67899999999542 3344333332211 2
Q ss_pred -CceEEEEEeCChhhhhcc---------ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcC------
Q 008685 303 -PRSTIIITTRDKQVLRNW---------GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQ------ 366 (557)
Q Consensus 303 -~~~~IiiTsR~~~~~~~~---------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~------ 366 (557)
.+..+|+||+...+.... .....+.+++|+.+++.++|..++.....+.....+....+++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 455688888765432111 0123399999999999999976543211111223677889999999
Q ss_pred CCchhhHhhhhhhc------C---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhccc----CCCCH
Q 008685 367 GVPLALKVLGCFLF------G---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFF----KGEDV 433 (557)
Q Consensus 367 G~PLal~~~a~~L~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~ 433 (557)
|+|..+..++.... + -+...+......... ...+..++..||+..+.++..++.+. ..++.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 99976665543221 1 122323322222110 23445567889999999999999764 22445
Q ss_pred HHHHH----HH-HhcCCc------hhhcHHHHhhCCCeEEcc-----CCeEEcCHHH
Q 008685 434 YSVMK----FL-DASGFY------PEIGISVLVDKSLIVISN-----NDRITMHDLL 474 (557)
Q Consensus 434 ~~l~~----~~-~~~~~~------~~~~l~~L~~~sLl~~~~-----~~~~~mH~lv 474 (557)
..+.. +. ...+.. ...+++.|.+.|||.... .|+|++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 44332 22 222221 235699999999998643 3345455443
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.4e-13 Score=140.65 Aligned_cols=273 Identities=17% Similarity=0.073 Sum_probs=168.1
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhcc------C--CceEEEEeccccccCCC-
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD------F--EGSCFLQNVREESVRPG- 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f--~~~~~~~~~~~~~~~~~- 243 (557)
..|+||+.+++++..++.. .....+.+.|+|++|+|||+||+.+++.+... + ...+++. ... ..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~----~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE----VGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH----HCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc----CCC
Confidence 6799999999999988754 23346689999999999999999999987443 2 2233433 211 22
Q ss_pred ChHHHHHHHHHHHhcCCcccc------CHHHHHHHHccCceEEEEcCCCCHH------H-HHHHhccCCCCCCceEEEEE
Q 008685 244 GLACLQLKLLSKLLQDNNVIL------NIALSFRRLSRRKVLIVFDDVSCFN------Q-IESLIGSLDWFTPRSTIIIT 310 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~------~-~~~l~~~l~~~~~~~~IiiT 310 (557)
....+...++..+.+...... ....+.+.+..++.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 455666666666633221111 1445566666666699999995432 2 33333332 67888999
Q ss_pred eCChhhhhcc------ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcC---CCch-hhHhhhhhh-
Q 008685 311 TRDKQVLRNW------GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQ---GVPL-ALKVLGCFL- 379 (557)
Q Consensus 311 sR~~~~~~~~------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~a~~L- 379 (557)
|+........ .....+.+++++.++..+++..++..........++..+.+++.++ |+|. ++..+-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8876321111 1123899999999999999998753211111222466788899998 9887 333332221
Q ss_pred -c----CCCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccCCCCH-HHHHHHHHhcCCc------h
Q 008685 380 -F----GREKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFKGEDV-YSVMKFLDASGFY------P 447 (557)
Q Consensus 380 -~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~~~~-~~l~~~~~~~~~~------~ 447 (557)
. .-+.+.+..++.... ...+..+++.|++.++.++..++....+-+. +....+....|.. .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 124566665555432 2346677889999999988888771110111 1223333332211 2
Q ss_pred hhcHHHHhhCCCeEEc
Q 008685 448 EIGISVLVDKSLIVIS 463 (557)
Q Consensus 448 ~~~l~~L~~~sLl~~~ 463 (557)
..++..|.+.|++...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 3468999999999864
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.5e-13 Score=140.31 Aligned_cols=277 Identities=16% Similarity=0.126 Sum_probs=163.2
Q ss_pred CCccccchhHHHHHHhhccc--CCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---ceEEEEeccccccCCCChHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE--WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---GSCFLQNVREESVRPGGLACLQ 249 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~ 249 (557)
..|+||+.+++.|.+++... ....+.+.|+|++|+|||||++.+++.....+. ..+++. ... ......+.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~----~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQ----IDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHH----HCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCC----CCCHHHHH
Confidence 77999999999999988742 344678999999999999999999998766542 233443 111 12333444
Q ss_pred HHHHHHHhcCCccc-cC----HHHHHHHHc--cCceEEEEcCCCC------HHHHHHHhccCCC-CCCceEEEEEeCChh
Q 008685 250 LKLLSKLLQDNNVI-LN----IALSFRRLS--RRKVLIVFDDVSC------FNQIESLIGSLDW-FTPRSTIIITTRDKQ 315 (557)
Q Consensus 250 ~~ll~~~~~~~~~~-~~----~~~l~~~l~--~k~~LlVlDdv~~------~~~~~~l~~~l~~-~~~~~~IiiTsR~~~ 315 (557)
..++..+....... .. ...+.+.+. +++.+||||+++. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 44444332211111 11 333444443 3489999999954 2334444333211 134567788887664
Q ss_pred hhhccc-------cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcC---CCchhhHhhhhhhc-----
Q 008685 316 VLRNWG-------VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQ---GVPLALKVLGCFLF----- 380 (557)
Q Consensus 316 ~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a~~L~----- 380 (557)
...... ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 322211 125899999999999999988653211112233677788888888 99985443332210
Q ss_pred -C---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccC-C---CCHHHH----HHHHHhcCCc--
Q 008685 381 -G---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFK-G---EDVYSV----MKFLDASGFY-- 446 (557)
Q Consensus 381 -~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~-~---~~~~~l----~~~~~~~~~~-- 446 (557)
+ -+.+.+..++... ....+..++..|++..+.++..++.+.. + ++...+ ..+....+..
T Consensus 255 ~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~ 327 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAV 327 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCC
Confidence 1 1334444443332 1235666788999999999888885432 2 333322 2222222211
Q ss_pred ----hhhcHHHHhhCCCeEEc
Q 008685 447 ----PEIGISVLVDKSLIVIS 463 (557)
Q Consensus 447 ----~~~~l~~L~~~sLl~~~ 463 (557)
...+++.|.+.|+|...
T Consensus 328 ~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 328 TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 24579999999999863
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=5.6e-13 Score=136.42 Aligned_cols=299 Identities=15% Similarity=0.109 Sum_probs=178.0
Q ss_pred CCccccchhHHHHHHhhccc--CCC--cEEEEEeccCCCchhHHHHHHHHHhhccC-CceEEEEeccccccCCCChHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE--WED--VYTLGIWGIGGIGKTTIAKAIFEKISSDF-EGSCFLQNVREESVRPGGLACLQ 249 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~--~~~--~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 249 (557)
+.++||+.++++|..++... ... .+.+.|+|++|+|||||++.+++...... ...+++. . .. ......+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~~-~~~~~~~~ 91 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---FI-YRNFTAII 91 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---TT-CCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---cc-CCCHHHHH
Confidence 67999999999999988651 122 34899999999999999999999876542 2333433 1 11 33445566
Q ss_pred HHHHHHHhcCCcccc-C----HHHHHHHHc--cCceEEEEcCCCC--HHHHHHHhccCCCCC----CceEEEEEeCChhh
Q 008685 250 LKLLSKLLQDNNVIL-N----IALSFRRLS--RRKVLIVFDDVSC--FNQIESLIGSLDWFT----PRSTIIITTRDKQV 316 (557)
Q Consensus 250 ~~ll~~~~~~~~~~~-~----~~~l~~~l~--~k~~LlVlDdv~~--~~~~~~l~~~l~~~~----~~~~IiiTsR~~~~ 316 (557)
..++..+........ . ...+.+.+. +++.+||||+++. ...+..+...+.... .+..+|++|+....
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666665543211111 1 233333333 5688999999954 444555544443211 46778888877643
Q ss_pred hhccc-------cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHc---------CCCchhhHhhhhhhc
Q 008685 317 LRNWG-------VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYA---------QGVPLALKVLGCFLF 380 (557)
Q Consensus 317 ~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~a~~L~ 380 (557)
..... ....+.+++++.++..+++...+..........++....+++.+ +|+|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22211 12369999999999999998876431111223367888999999 798865554433221
Q ss_pred ------C---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhccc---C--CCCHHHHHHHHHh----
Q 008685 381 ------G---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFF---K--GEDVYSVMKFLDA---- 442 (557)
Q Consensus 381 ------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~---~--~~~~~~l~~~~~~---- 442 (557)
+ -+.+........... ..+...+..|++..+.++..++.+. . .++...+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 1 122333333322211 1123345678899999988888654 2 3444444443322
Q ss_pred cCC------chhhcHHHHhhCCCeEEccC-------CeEE-------cCHHHHHHHHHHHhhh
Q 008685 443 SGF------YPEIGISVLVDKSLIVISNN-------DRIT-------MHDLLQELGRDIVLQE 485 (557)
Q Consensus 443 ~~~------~~~~~l~~L~~~sLl~~~~~-------~~~~-------mH~lvr~~a~~~~~~e 485 (557)
.+. .....++.|.+.|+|..... |++. .|+++..+...++.+|
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 221 12346999999999987433 2222 3677777777766655
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.50 E-value=2e-12 Score=132.12 Aligned_cols=277 Identities=13% Similarity=0.085 Sum_probs=164.1
Q ss_pred CCccccchhHHHHHHhhccc--CCCcEEEEEeccCCCchhHHHHHHHHHhhccC-----C-ceEEEEeccccccCCCChH
Q 008685 175 NQLVGVESRVEEIESLLGVE--WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-----E-GSCFLQNVREESVRPGGLA 246 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~~~ 246 (557)
..|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++...... . ..+++. . .. .....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~---~~-~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A---RH-RETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T---TT-SCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C---Cc-CCCHH
Confidence 77999999999999988542 34567899999999999999999998875431 2 223332 1 11 34455
Q ss_pred HHHHHHHHHHhcCCcccc-C----HHHHHHHH--ccCceEEEEcCCCCHH-------HHHHHhccCCCC--CCceEEEEE
Q 008685 247 CLQLKLLSKLLQDNNVIL-N----IALSFRRL--SRRKVLIVFDDVSCFN-------QIESLIGSLDWF--TPRSTIIIT 310 (557)
Q Consensus 247 ~l~~~ll~~~~~~~~~~~-~----~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~~l~~~l~~~--~~~~~IiiT 310 (557)
.+...++..+........ . ...+.+.+ .+++.+||||+++... .+..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 666666666643221111 1 33444455 3458899999996543 223333322211 345677778
Q ss_pred eCChhhhhcc-----c--cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcC---CCchhhHhhh-hhh
Q 008685 311 TRDKQVLRNW-----G--VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQ---GVPLALKVLG-CFL 379 (557)
Q Consensus 311 sR~~~~~~~~-----~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a-~~L 379 (557)
|+........ . ....+.+++++.++..+++...+..........++..+.+++.++ |+|..+..+. ...
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7765321111 1 125789999999999999988753211111222456788888888 9994333222 211
Q ss_pred ---c--C---CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcccCC---CCHHHHHH----HHHhcC
Q 008685 380 ---F--G---REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACFFKG---EDVYSVMK----FLDASG 444 (557)
Q Consensus 380 ---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f~~~---~~~~~l~~----~~~~~~ 444 (557)
. + -+.+.+..++.... ...+..++..|++.++..+..++.+..+ +....+.+ +....+
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 0 1 14455555544331 2345667889999999888877744323 33332222 222222
Q ss_pred C------chhhcHHHHhhCCCeEEc
Q 008685 445 F------YPEIGISVLVDKSLIVIS 463 (557)
Q Consensus 445 ~------~~~~~l~~L~~~sLl~~~ 463 (557)
. .....++.|...|++...
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 123468999999999864
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=160.40 Aligned_cols=96 Identities=16% Similarity=0.269 Sum_probs=86.6
Q ss_pred CeEEEecccccccCchH-HHHHHHHhh-----CCCceEeeC-CCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHH
Q 008685 1 MMFFLSFRGEDTRDNFA-SHLFSALSQ-----KSIETFIDD-QLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLD 73 (557)
Q Consensus 1 ~dvFis~~~~d~~~~~~-~~l~~~l~~-----~g~~~~~d~-~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~ 73 (557)
+||||||+++| ..|| .+|.+.|++ .|+++|+++ |+.||+.+.++|.+||++|+++|+|+|++|+.|.||..
T Consensus 671 yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~ 748 (844)
T 3j0a_A 671 YDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLE 748 (844)
T ss_dssp CSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTH
T ss_pred ccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHH
Confidence 59999999999 5688 779999985 689999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-cccCceEEeEEEEecc
Q 008685 74 ELLKILDCR-KEYAQIVIPVFYRVDP 98 (557)
Q Consensus 74 El~~~~~~~-~~~~~~v~Pv~~~v~p 98 (557)
|+..|+.+. ++.+++||||||+.-|
T Consensus 749 e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 749 AFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp HHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 999988766 4566789999988444
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=2.6e-12 Score=122.04 Aligned_cols=192 Identities=14% Similarity=0.088 Sum_probs=119.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++||+.+++.|..++..+. ..+.+.|+|++|+||||||+.+++.....+...... ....... ..+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP---------CGVCDNC-REIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC---------CSCSHHH-HHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CcccHHH-HHHhc
Confidence 569999999999999987532 235889999999999999999998875433211000 0000000 00000
Q ss_pred HH----hc-CCccccC---HHHHHHH-----HccCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCChhhhh-
Q 008685 255 KL----LQ-DNNVILN---IALSFRR-----LSRRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDKQVLR- 318 (557)
Q Consensus 255 ~~----~~-~~~~~~~---~~~l~~~-----l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~~- 318 (557)
.. .. ....... ...+.+. ..+++.+||+||++ +...+..+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00 00 0000000 1111111 13467899999995 45566666655554456788888887654221
Q ss_pred -ccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhh
Q 008685 319 -NWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFL 379 (557)
Q Consensus 319 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 379 (557)
.......+++++++.++..+++...+...... ..++....|++.|+|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11234689999999999999998876543222 225778899999999999988776443
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=2.9e-11 Score=113.12 Aligned_cols=183 Identities=10% Similarity=0.104 Sum_probs=115.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEeccccccCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
..++||+..++.+..++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+.. . ......+.. .+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---D-ERGIDVVRH-KI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---C-TTCHHHHHH-HH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---c-ccChHHHHH-HH
Confidence 679999999999999987542 2348999999999999999999886443 22222222111 1 222222221 11
Q ss_pred HHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChhhh-hc-cccceEEEcc
Q 008685 254 SKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQVL-RN-WGVKKIYEME 329 (557)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~-~~-~~~~~~~~l~ 329 (557)
........ ....++.+||+||++. ......+...+.....+..+|+||+..... .. ......++++
T Consensus 90 ~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 90 KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 11111100 0125688999999954 344444544444345678888888765321 11 1223589999
Q ss_pred cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 330 ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 330 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
+++.++..+++...+...... ..++....+++.++|+|..+..+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999998876432222 225778889999999998665443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=1.9e-10 Score=114.31 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=113.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-Cc-eEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-EG-SCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+.... .. .+.+. . +. ..+...+ ..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~-~~~~~~i-~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SD-DRGIDVV-RNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TS-CCSHHHH-HTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---cc-ccChHHH-HHH
Confidence 569999999999999987542 22389999999999999999999864332 22 22221 1 11 1122222 222
Q ss_pred HHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChhh-hhc-cccceEEE
Q 008685 253 LSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQV-LRN-WGVKKIYE 327 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~-~~~-~~~~~~~~ 327 (557)
+..+..... .+ .+++.++|+||++. ......+...+.....++.+|+||....- ... ......++
T Consensus 93 ~~~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 93 IKHFAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHHHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 222211000 01 34588999999964 34444444444434567888888876532 111 12345899
Q ss_pred cccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchh-hHhh
Q 008685 328 MEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA-LKVL 375 (557)
Q Consensus 328 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 375 (557)
+.+++.++..+++...+...... ..++....|++.++|+|.. +..+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998876432222 2257788999999999954 4444
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=4.6e-10 Score=111.70 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=113.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-Cc-eEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-EG-SCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|++..++.|..++..+ ..+.+.|+|++|+|||++|+.+++.+.... .. .+.+. ... ..+... ....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~----~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASD----ERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTC----HHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccc----cCchHH-HHHH
Confidence 67999999999999988754 233489999999999999999999864332 11 12221 110 000000 0111
Q ss_pred HHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChhhh-hc-cccceEEEc
Q 008685 253 LSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQVL-RN-WGVKKIYEM 328 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~-~~-~~~~~~~~l 328 (557)
+........ ...+++.++|+|+++. ......+...+.....++++|+||...... .. ......+++
T Consensus 97 ~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 97 VKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred HHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 111110000 0125678999999964 344555555544445678888888765321 11 122357899
Q ss_pred ccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 329 EALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 329 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
.+++.++..+++...+...... ..++....|++.++|+|..+..+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999998776432221 2357788999999999986654443
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.13 E-value=3.8e-09 Score=104.99 Aligned_cols=253 Identities=17% Similarity=0.118 Sum_probs=145.8
Q ss_pred CCccccchhHHHHHHhhcc---cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGV---EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|+|++..++.+...+.. .......+.|+|++|+|||+||+.+++.....| .++. ... ......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~----~~~~~~---- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA----IEKPGD---- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT----CCSHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc----cCChHH----
Confidence 6799999999999888753 112345789999999999999999998764221 2221 111 111111
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCC------------------CCceEEEEEe
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWF------------------TPRSTIIITT 311 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~~IiiTs 311 (557)
+...+.. ...++.+|+||+++.. .....+...+... .++..+|.||
T Consensus 80 l~~~l~~--------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 80 LAAILAN--------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp HHHHHTT--------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred HHHHHHH--------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1111110 0135679999999653 2333333222110 1234566666
Q ss_pred CChhhhh-c-ccc-ceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcC-------
Q 008685 312 RDKQVLR-N-WGV-KKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFG------- 381 (557)
Q Consensus 312 R~~~~~~-~-~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~------- 381 (557)
....... . ... ...+.+++++.++..+++...+..... ....+....++++++|+|-.+..+...+..
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 223 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGE 223 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSC
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcC
Confidence 5443211 1 112 257899999999999999887643322 223677899999999999888766544321
Q ss_pred --CCHHHHHHHHHhhhcCChhhHHHHHHHhhcCCChhhHHHHhhhhcc-c-CCCCHHHHHHHHHhcCCchhhcHHH-Hhh
Q 008685 382 --REKEVWKSAINKLKSILHPSIQEILKISYDGLDDKEKNIFLDVACF-F-KGEDVYSVMKFLDASGFYPEIGISV-LVD 456 (557)
Q Consensus 382 --~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~l~~la~f-~-~~~~~~~l~~~~~~~~~~~~~~l~~-L~~ 456 (557)
-+.+.....+.. +......+++.++..+..+... . ..+....+...++.+.......+.. +++
T Consensus 224 ~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 224 EVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR 291 (324)
T ss_dssp SCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH
Confidence 122222222221 1223446777777777766543 2 3355666666554322222233444 888
Q ss_pred CCCeEEccCCe
Q 008685 457 KSLIVISNNDR 467 (557)
Q Consensus 457 ~sLl~~~~~~~ 467 (557)
.+++.....|+
T Consensus 292 ~~li~~~~~g~ 302 (324)
T 1hqc_A 292 QGLLKRTPRGR 302 (324)
T ss_dssp TTSEEEETTEE
T ss_pred hcchhcCCccc
Confidence 99998775554
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.04 E-value=7.9e-09 Score=102.26 Aligned_cols=180 Identities=10% Similarity=0.102 Sum_probs=113.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCc-eEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEG-SCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|++..++.|..++..+ ..+.+.|+|++|+|||++|+.+++.+... +.. .+.+. ...... ..........+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 92 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG-IDVVRHKIKEF 92 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC-TTTSSHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC-hHHHHHHHHHH
Confidence 56999999999999988754 22338999999999999999999986332 221 12221 111000 01111111111
Q ss_pred HHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChhh-hhc-cccceEEE
Q 008685 253 LSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQV-LRN-WGVKKIYE 327 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~-~~~-~~~~~~~~ 327 (557)
. ... .+ .+++.++|+|+++. ......+...+.....++.+|+||....- ... ......++
T Consensus 93 ~----~~~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 93 A----RTA-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp H----HSC-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred H----hcC-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 1 000 01 24578999999954 34556666666655677888888866531 111 12345899
Q ss_pred cccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 328 MEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 328 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+.+++.++..+++...+...... ..++....+++.++|++..+...
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998776433222 23677888999999999865444
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.96 E-value=8.5e-09 Score=104.52 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=114.9
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|++..++.|...+..+. ..+.+.|+|++|+|||++|+.+++.+........ . . ....... ..+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-----~---~-~~~~~~~-~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-----T---P-CGVCDNC-REIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-----S---C-CSSSHHH-HHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-----C---C-CcccHHH-HHHhc
Confidence 569999999999999886532 2457899999999999999999988643221000 0 0 0000000 00000
Q ss_pred H----H---hcCCcccc-CHHHHHHHH-----ccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChhh-hh
Q 008685 255 K----L---LQDNNVIL-NIALSFRRL-----SRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQV-LR 318 (557)
Q Consensus 255 ~----~---~~~~~~~~-~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~~-~~ 318 (557)
. + ........ ....+.+.+ .+++.++|+||++. ......++..+.....+..+|++|....- ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0 0 00000000 133333333 24578999999953 44555665555444567777777765432 11
Q ss_pred c-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 319 N-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 319 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
. ......+++.+++.++..+++...+...... ...+....|++.++|+|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 2234689999999999999998765332221 225678889999999999876654
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=2.8e-07 Score=92.49 Aligned_cols=192 Identities=9% Similarity=0.094 Sum_probs=111.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc--CCceEEEEeccccccCCCChHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD--FEGSCFLQNVREESVRPGGLACLQLKL 252 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 252 (557)
..++|++..++.|..++..+.. ..+.|+|++|+||||+|+.+++.+... +...+.-.+.. . ..+...+. ..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~-~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---D-ERGISIVR-EK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---S-CCCHHHHT-TH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---c-ccchHHHH-HH
Confidence 6799999999999999875422 238999999999999999999886421 22222211111 1 12222221 11
Q ss_pred HHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEc
Q 008685 253 LSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEM 328 (557)
Q Consensus 253 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l 328 (557)
....................-..++-+|++|+++. ......+...+.......++|++|.... +... ......+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 11111110000000000001123456999999953 3334444444433345677777775542 2111 122357899
Q ss_pred ccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 329 EALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 329 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
.+++.++..+.+...+...... ..++....|++.++|+|-.+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998876432221 23678899999999999865443
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.85 E-value=2.5e-08 Score=99.72 Aligned_cols=261 Identities=16% Similarity=0.139 Sum_probs=145.9
Q ss_pred CCccccchhHHHHHHhhccc---CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE---WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| +.+. ... ......+. .
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~----~~~~~~~~-~ 99 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM----IEKSGDLA-A 99 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG----CCSHHHHH-H
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh----ccchhHHH-H
Confidence 67999999999999888642 23445689999999999999999988754332 1111 111 11111111 1
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCC------------------CCceEEEEEe
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWF------------------TPRSTIIITT 311 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~~IiiTs 311 (557)
.+ .. ..+..+|+||+++.. .....++..+... .++..+|.+|
T Consensus 100 ~~-----------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 100 IL-----------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp HH-----------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred HH-----------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 10 00 235679999999542 3333333222111 1124566666
Q ss_pred CChhhhh-c-cc-cceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHH
Q 008685 312 RDKQVLR-N-WG-VKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWK 388 (557)
Q Consensus 312 R~~~~~~-~-~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~ 388 (557)
....... . .. ....+.+++++.++..+++...+..... ....+....+++.+.|+|-.+..+...+. .|.
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~-----~~a 234 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVR-----DFA 234 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHH-----HHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHH-----HHH
Confidence 5432211 1 11 2368999999999999999877643221 12357788899999999966554433321 010
Q ss_pred HHHHhhhcCChhhHHHH---HHHhhcCCChhhHHHHhhhhcccC-CCCHHHHHHHHHhcCCchhhcHH-HHhhCCCeEEc
Q 008685 389 SAINKLKSILHPSIQEI---LKISYDGLDDKEKNIFLDVACFFK-GEDVYSVMKFLDASGFYPEIGIS-VLVDKSLIVIS 463 (557)
Q Consensus 389 ~~l~~l~~~~~~~i~~~---l~~s~~~L~~~~k~~l~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~~ 463 (557)
.. ..-.....+.+... +..+...++..++..+..++-... ..+...+...++.+.......++ .|++.++|...
T Consensus 235 ~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 235 DV-NDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp HH-TTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEE
T ss_pred Hh-hcCCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecC
Confidence 00 00000011112222 222334556655666666665522 24566666666543333344566 89999999987
Q ss_pred cCCeEEc
Q 008685 464 NNDRITM 470 (557)
Q Consensus 464 ~~~~~~m 470 (557)
..|+...
T Consensus 314 ~~g~~~t 320 (338)
T 3pfi_A 314 AKGRIAS 320 (338)
T ss_dssp TTEEEEC
T ss_pred CCccccc
Confidence 6666543
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.79 E-value=8.3e-09 Score=97.56 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCccccc---hhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVE---SRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~---~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|+|++ ..++.+..+...+ ..+.+.|+|++|+|||+||+.+++..........++. ...... . ..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~-~--~~----- 96 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHAS-I--ST----- 96 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG-S--CG-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH-H--HH-----
Confidence 5678743 4556666665432 4568899999999999999999998766544445554 211111 0 00
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH--H--HHHHhccCCCC-CCc-eEEEEEeCChh-h--------
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN--Q--IESLIGSLDWF-TPR-STIIITTRDKQ-V-------- 316 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~--~~~l~~~l~~~-~~~-~~IiiTsR~~~-~-------- 316 (557)
.. .+.+ .++.+||+||++... . ...+...+... ..+ .++|+||+... .
T Consensus 97 ---~~-------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ---AL-------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---GG-------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---HH-------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00 0011 346799999994321 1 22222221110 112 24777776432 1
Q ss_pred hhccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhh
Q 008685 317 LRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGC 377 (557)
Q Consensus 317 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 377 (557)
...+.....+++++++.++..+++...+..... ...++....+++.++|++-.+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112268999999999999999887643222 22367788999999999877665543
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=8.9e-09 Score=93.51 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 67999999999999998653 3456889999999999999999998644
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=1.8e-07 Score=90.98 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=102.9
Q ss_pred CCccccchhHHHHHHhhccc-----------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGVE-----------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~~~~~ 92 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELVKKFI 92 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGCCCST
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHHHhcc
Confidence 67999999999998877431 13456799999999999999999998764321 1121 111111011
Q ss_pred C-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCC--CCCc
Q 008685 244 G-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDW--FTPR 304 (557)
Q Consensus 244 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~ 304 (557)
+ ...... ..+.......+.+|+||+++.. ..+..++..+.. ...+
T Consensus 93 ~~~~~~~~----------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 93 GEGASLVK----------------DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp THHHHHHH----------------HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred chHHHHHH----------------HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1 011111 1112222346789999999542 123333332221 2345
Q ss_pred eEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCC-CchhhHhh
Q 008685 305 STIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQG-VPLALKVL 375 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 375 (557)
..||.||........ ......+.+++.+.++..+++...+....... ......++..+.| .|-.+..+
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHHH
Confidence 677778875533221 12235789999999999999988764332221 2225677777777 45455444
No 33
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=1.4e-07 Score=99.84 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=104.3
Q ss_pred CCccccchhHHHHHHhhcccC---------------CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccc
Q 008685 175 NQLVGVESRVEEIESLLGVEW---------------EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREES 239 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~---------------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 239 (557)
..++|++..++.|..++.... ...+.+.|+|++|+|||++|+.+++... +. .+.+ +..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s--- 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NAS--- 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTT---
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCC---
Confidence 679999999999999986410 1346899999999999999999999862 21 1112 111
Q ss_pred cCCCChHHHHHHHHHHHhcCCccccCHHHHHH--HHccCceEEEEcCCCCH-----HHHHHHhccCCCCCCceEEEEEeC
Q 008685 240 VRPGGLACLQLKLLSKLLQDNNVILNIALSFR--RLSRRKVLIVFDDVSCF-----NQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 240 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
. ... .......+...........-.....+ ...+++.+|++|+++.. ..+..+...+. ..+..||+++.
T Consensus 112 ~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~ 187 (516)
T 1sxj_A 112 D-VRS-KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICN 187 (516)
T ss_dssp S-CCC-HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEES
T ss_pred C-cch-HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEc
Confidence 1 111 11222211111111100000000000 11356789999999432 11233332222 12334555554
Q ss_pred Chh---hhhccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhh
Q 008685 313 DKQ---VLRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVL 375 (557)
Q Consensus 313 ~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 375 (557)
+.. +.........+.+++++.++..+.+...+......- .++....|++.++|.+- ++..+
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 332 222223346899999999999999887664432221 24568889999999654 44443
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.69 E-value=1.1e-07 Score=98.29 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=105.7
Q ss_pred CCcc-ccchhH--HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCc--eEEEEeccccccCCCChHHHH
Q 008685 175 NQLV-GVESRV--EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEG--SCFLQNVREESVRPGGLACLQ 249 (557)
Q Consensus 175 ~~~v-GR~~~l--~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 249 (557)
..|+ |....+ ..+........ ....+.|+|++|+||||||+.+++.+...++. .+++. ...+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHH
Confidence 3465 655443 23333333222 25679999999999999999999988665533 23332 11122
Q ss_pred HHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----HHHHHHhccCCC-CCCceEEEEEeCChh---------
Q 008685 250 LKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----NQIESLIGSLDW-FTPRSTIIITTRDKQ--------- 315 (557)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~IiiTsR~~~--------- 315 (557)
..+...+... ....+...+..++-+|+|||++.. ...+.+...+.. ...|..||+||.+..
T Consensus 173 ~~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 173 NDLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 2333333221 133344444446789999999432 222333322211 135677888887632
Q ss_pred hhhccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 316 VLRNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+...+.....+.+++++.++-.+++...+...... ..++....|++.++|++--+..+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 11112223578999999999999998876432211 12456788999999998765544
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.68 E-value=6.4e-07 Score=87.62 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=100.7
Q ss_pred CCccccchhHHHHHHhhccc----------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccC-CC
Q 008685 175 NQLVGVESRVEEIESLLGVE----------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVR-PG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 243 (557)
..++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++......| +.+. ....... ..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~~~~~ 96 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTSKYVG 96 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSSSSCS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhhcccc
Confidence 67999999999998876321 12356789999999999999999998763221 1121 1111100 01
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccC---CCC--CCce
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSL---DWF--TPRS 305 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l---~~~--~~~~ 305 (557)
........+ +......++.+|+||+++.. .....++..+ ... +.+.
T Consensus 97 ~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 97 DGEKLVRAL----------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp CHHHHHHHH----------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred hHHHHHHHH----------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 111111111 11122346789999999432 1112222221 111 1345
Q ss_pred EEEEEeCChhhhhc-c--ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhhh
Q 008685 306 TIIITTRDKQVLRN-W--GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVLG 376 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~a 376 (557)
.||.||.....+.. . .....+.++..+.++-..++...+...... ...+....+++.+.|.+- .|..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56667765432111 0 123567788888888888887765332211 225667889999999875 555444
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.68 E-value=6.5e-07 Score=89.96 Aligned_cols=203 Identities=18% Similarity=0.162 Sum_probs=112.6
Q ss_pred chhhhHHHHHhhhcccccccCCCCCCCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHH
Q 008685 150 ESKLVKEVVNHILKRLATVFPCVNNNQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 150 e~~~i~~i~~~~~~~~~~~~p~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~ 219 (557)
+...++.+...+.... |...-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 4445555555554432 222226799999999999887642 11235679999999999999999999
Q ss_pred HHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-----------
Q 008685 220 EKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------- 288 (557)
Q Consensus 220 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------- 288 (557)
+.... .++..+.........+. ....+. ..+......++.+|+||+++..
T Consensus 139 ~~~~~----~~~~i~~~~l~~~~~g~---~~~~~~------------~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 199 (357)
T 3d8b_A 139 SQSGA----TFFSISASSLTSKWVGE---GEKMVR------------ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199 (357)
T ss_dssp HHTTC----EEEEEEGGGGCCSSTTH---HHHHHH------------HHHHHHHHTCSEEEEEETHHHHTBC------CH
T ss_pred HHcCC----eEEEEehHHhhccccch---HHHHHH------------HHHHHHHhcCCeEEEEeCchhhhccCCCCcchH
Confidence 87532 12222222111101110 000111 1111122356789999999432
Q ss_pred --HHHHHHhccCCC----CCCceEEEEEeCChhhhhc---cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHH
Q 008685 289 --NQIESLIGSLDW----FTPRSTIIITTRDKQVLRN---WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSS 359 (557)
Q Consensus 289 --~~~~~l~~~l~~----~~~~~~IiiTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 359 (557)
.....++..+.. ...+..||.||.....+.. ......+.++..+.++..+++...+...... ...+...
T Consensus 200 ~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~ 277 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIE 277 (357)
T ss_dssp HHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHH
Confidence 112233322221 1234556666655422111 0123577889999999888887765332211 2256788
Q ss_pred HHHHHcCC-CchhhHhhhh
Q 008685 360 KVMEYAQG-VPLALKVLGC 377 (557)
Q Consensus 360 ~i~~~~~G-~PLal~~~a~ 377 (557)
.|++.+.| .+-.|..+..
T Consensus 278 ~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 278 QIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 89999998 4556666553
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.68 E-value=8e-07 Score=85.73 Aligned_cols=169 Identities=14% Similarity=0.072 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHh-------hcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChH
Q 008685 175 NQLVGVESRVEEIESL-------LGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLA 246 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~-------L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (557)
..++|....++++... +.. .....+.+.|+|++|+|||+||+.+++.... +... +..... .. .....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~-i~~~~~-~~-g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--PFIK-ICSPDK-MI-GFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEE-EECGGG-CT-TCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC--CEEE-EeCHHH-hc-CCchH
Confidence 5678888777666652 221 2345678999999999999999999997532 2221 211110 00 11111
Q ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH------------HHHHHHhccCCC---CCCceEEEEEe
Q 008685 247 CLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF------------NQIESLIGSLDW---FTPRSTIIITT 311 (557)
Q Consensus 247 ~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~~~~IiiTs 311 (557)
..... + ...+......++.+|+||+++.. ..+..+...+.. .+....||.||
T Consensus 108 ~~~~~-~------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 108 AKCQA-M------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp HHHHH-H------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred HHHHH-H------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 10000 0 11112223356789999998542 122333332221 23345567777
Q ss_pred CChhhhhc---cc-cceEEEcccCCH-HHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 312 RDKQVLRN---WG-VKKIYEMEALEY-DHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 312 R~~~~~~~---~~-~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
........ .+ ....+.+++++. ++..+++.... . ...+....+++.+.|.
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N----FKDKERTTIAQQVKGK 229 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C----SCHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C----CCHHHHHHHHHHhcCC
Confidence 77644332 11 146789999988 66666655421 1 1256678899999885
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.64 E-value=3.2e-07 Score=90.24 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=89.0
Q ss_pred CccccchhHHHHHHhhcc-------------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC--c-eEEEEeccccc
Q 008685 176 QLVGVESRVEEIESLLGV-------------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE--G-SCFLQNVREES 239 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~-------------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~ 239 (557)
.++|.+...+.|.+.+.. .......+.|+|++|+|||+||+.+++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 588999988888766532 1234557899999999999999999988654321 1 12111111111
Q ss_pred cCCCC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCC-----------CHHHHHHHhccCCCCCCceEE
Q 008685 240 VRPGG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVS-----------CFNQIESLIGSLDWFTPRSTI 307 (557)
Q Consensus 240 ~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~~~~I 307 (557)
....+ .... ...+.+. .++.+|+||+++ .......++..+.....+..|
T Consensus 112 ~~~~g~~~~~-----------------~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAPK-----------------TKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHHHH-----------------HHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccHHH-----------------HHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 00000 0000 0111111 135699999996 444455555555444556778
Q ss_pred EEEeCChhh----------hhccccceEEEcccCCHHHHHHHHHhccc
Q 008685 308 IITTRDKQV----------LRNWGVKKIYEMEALEYDHALELFSRHAF 345 (557)
Q Consensus 308 iiTsR~~~~----------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 345 (557)
|+||..... ... ....+.+++++.++-.+++...+.
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 888764321 111 236899999999999999987764
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.62 E-value=1.1e-06 Score=87.10 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=103.2
Q ss_pred CCccccchhHHHHHHhhc----------ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCC-C
Q 008685 175 NQLVGVESRVEEIESLLG----------VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRP-G 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~----------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~ 243 (557)
..++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+.+++.....| +.+. ........ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~~~~g 93 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLVSKWMG 93 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHHTTTGG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHhhcccc
Confidence 678999999999988772 1122346799999999999999999998864322 1111 11100000 0
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH-------------HHHHHhccCC---CCCCceEE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN-------------QIESLIGSLD---WFTPRSTI 307 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~~~I 307 (557)
...... ...+......++.+|+||+++... ....++..+. ....+..|
T Consensus 94 ~~~~~~----------------~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 94 ESEKLV----------------KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp GHHHHH----------------HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred hHHHHH----------------HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 000111 111112223467899999995321 1233332222 22345666
Q ss_pred EEEeCChhhhhc---cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhhh
Q 008685 308 IITTRDKQVLRN---WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVLG 376 (557)
Q Consensus 308 iiTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a 376 (557)
|.||.....+.. ......+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667765432211 012357788899999999999887643221 12256678888888874 44555444
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.62 E-value=1.4e-06 Score=83.25 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=99.4
Q ss_pred CCccccchhHHHHHHhhcc---c-------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV---E-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+...+.|.+++.. . ....+.+.|+|++|+|||+||+.+++.....| +.+. .........+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhccC
Confidence 5689999888888765421 1 12345688999999999999999999764321 2222 1111110000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-----------------HHHHHHhccCCCC--CCce
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-----------------NQIESLIGSLDWF--TPRS 305 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~~--~~~~ 305 (557)
. ....+ ...+.......+.+|+||+++.. ..+..++..+... ..+.
T Consensus 82 ~---~~~~~------------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 82 L---GAARV------------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp H---HHHHH------------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred h---hHHHH------------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 0 00000 11122222345789999999653 1123333322221 2355
Q ss_pred EEEEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhh
Q 008685 306 TIIITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVL 375 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 375 (557)
.||.||........ . .....+.++..+.++-.+++...+...... .........+++.+.|.+- .|..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 66777765432211 1 123578899999999999998776432221 1222234778888888754 44444
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.62 E-value=7.8e-07 Score=89.82 Aligned_cols=197 Identities=11% Similarity=-0.011 Sum_probs=106.7
Q ss_pred CCccccchhHHHHH---HhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIE---SLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~---~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..|+|++...+.+. ..+..+....+.+.|+|++|+|||+||+.+++.+....+.. .+....-.+. ..........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~ 121 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSL-EMSKTEALTQ 121 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCS-SSCHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhc-ccchhHHHHH
Confidence 67999999877754 44443333346899999999999999999999876433221 1111111111 2222222222
Q ss_pred HHHHHhcC-------------------------------Cccc-c-C-HHHHHHH-----HccC----ceEEEEcCCCC-
Q 008685 252 LLSKLLQD-------------------------------NNVI-L-N-IALSFRR-----LSRR----KVLIVFDDVSC- 287 (557)
Q Consensus 252 ll~~~~~~-------------------------------~~~~-~-~-~~~l~~~-----l~~k----~~LlVlDdv~~- 287 (557)
.+...... .... . . ...+... ..++ +.+|+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221100 0000 0 0 1111111 1122 46999999954
Q ss_pred -HHHHHHHhccCCCCCCceEEEEEeCC------------h-hhh-hccccceEEEcccCCHHHHHHHHHhccccCCCCCC
Q 008685 288 -FNQIESLIGSLDWFTPRSTIIITTRD------------K-QVL-RNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAV 352 (557)
Q Consensus 288 -~~~~~~l~~~l~~~~~~~~IiiTsR~------------~-~~~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 352 (557)
.+....+...+...... .++++|.. . .+. ........+.+++++.++..+++...+..... .
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--E 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--C
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 34445555444433333 34444431 1 010 11122346899999999999999977644322 2
Q ss_pred ChHHHHHHHHHHcC-CCchhhHhhh
Q 008685 353 GYEELSSKVMEYAQ-GVPLALKVLG 376 (557)
Q Consensus 353 ~~~~~~~~i~~~~~-G~PLal~~~a 376 (557)
...+....|++.+. |.|-.+..+.
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33677888999998 8887665443
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.5e-07 Score=88.59 Aligned_cols=167 Identities=8% Similarity=0.017 Sum_probs=98.2
Q ss_pred CCccccchhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC-----CceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF-----EGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 247 (557)
..+.||++|+++|...|.. .......+.|+|++|+|||++++.+++.+.... +...++. +. +.. ......
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~-IN-c~~-~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH-ID-ALE-LAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE-EE-TTC-CC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE-Ee-ccc-cCCHHH
Confidence 3488999999999988765 234567889999999999999999999975432 1122221 11 111 334456
Q ss_pred HHHHHHHHHhcCCcccc-CHHHHHHHH------ccCceEEEEcCCCCH---HHHHHHhccCCCCCCceEEEEEeCChhh-
Q 008685 248 LQLKLLSKLLQDNNVIL-NIALSFRRL------SRRKVLIVFDDVSCF---NQIESLIGSLDWFTPRSTIIITTRDKQV- 316 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~~-~~~~l~~~l------~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~IiiTsR~~~~- 316 (557)
+...+..++.+...... ....+.+.+ .+++++++||+++.. +.+..+............||.++...+.
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 66677777754422111 233333322 356799999999653 3333333210001122334444433221
Q ss_pred ---h-----hccccceEEEcccCCHHHHHHHHHhccc
Q 008685 317 ---L-----RNWGVKKIYEMEALEYDHALELFSRHAF 345 (557)
Q Consensus 317 ---~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 345 (557)
+ ..+ ....+.+++++.+|-.+++..++.
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111 125789999999999999988763
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.58 E-value=1.5e-06 Score=87.10 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=101.0
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+.+++.....| +.+. ....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l------ 120 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDL------ 120 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHH------
Confidence 6799999999999887621 112245689999999999999999999874321 1111 1110
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHH-HHccCceEEEEcCCCCHH-------------HHHHHhccCC---CCCCceEE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFR-RLSRRKVLIVFDDVSCFN-------------QIESLIGSLD---WFTPRSTI 307 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~~~I 307 (557)
.....+. .......+.. ....++.+|+||+++... ....++..+. ....+..|
T Consensus 121 --------~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 121 --------VSKWMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp --------HSCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred --------hhhhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 0000000 0000111111 223568899999996421 1233332222 12345566
Q ss_pred EEEeCChhhhhc---cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhhh
Q 008685 308 IITTRDKQVLRN---WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVLG 376 (557)
Q Consensus 308 iiTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a 376 (557)
|.||.....+.. ......+.++..+.++-.+++..++...... ........|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667655432110 0223577899999999999998776432211 1256678899999884 44455544
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.57 E-value=1.4e-06 Score=86.41 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=99.2
Q ss_pred CCcc-ccchh--HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLV-GVESR--VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~v-GR~~~--l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
+.|+ |.... ...+.............+.|+|++|+||||||+.+++.....-...+++. . ..+...
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~~ 79 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQA 79 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHHH
Confidence 4565 54433 33344444433223567899999999999999999998755422233332 1 112222
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH----HHHHHhccCCC-CCCceEEEEEeCChhh---------h
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN----QIESLIGSLDW-FTPRSTIIITTRDKQV---------L 317 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~IiiTsR~~~~---------~ 317 (557)
+...+... ....+...+. ++.+|++|++.... ..+.+...+.. ...+..||+||.+... .
T Consensus 80 ~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 80 MVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 22222211 1222333332 46799999994322 22222222110 1245678888764421 1
Q ss_pred hccccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhH
Q 008685 318 RNWGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 318 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 373 (557)
..+.....+++++ +.++..+++...+..... ...++....|++.+ |++-.+.
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHH
Confidence 1122236789999 999999999887643222 22367788899999 8875443
No 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=5.4e-07 Score=90.50 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=107.3
Q ss_pred CCccccchhHHHHHHhh-cccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEe-------------------
Q 008685 175 NQLVGVESRVEEIESLL-GVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQN------------------- 234 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~------------------- 234 (557)
..++|.+..++.|..++ ..+ .... +.|+|++|+||||+++.++..+.......+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 66999999999999988 543 2234 8999999999999999999865322111111100
Q ss_pred ----ccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEE
Q 008685 235 ----VREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTII 308 (557)
Q Consensus 235 ----~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~Ii 308 (557)
.. .+.............+..+.......... .+ ..+.+++-++|+|++.. ......+...+.....+..+|
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 92 YHLEIT-PSDMGNNDRIVIQELLKEVAQMEQVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp SEEEEC-CC----CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred ceEEec-HhhcCCcchHHHHHHHHHHHHhccccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 00 00000000001122222221111000000 00 00234677999999964 333444444443334577888
Q ss_pred EEeCChh-hhhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCCh-HHHHHHHHHHcCCCchhhHhh
Q 008685 309 ITTRDKQ-VLRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGY-EELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 309 iTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~ 375 (557)
++|.+.. +... ......+++++++.++..+.+...+...... .. ++.+..|++.++|.+-.+..+
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 8876643 2211 2234789999999999999998876432211 11 356788999999998765444
No 46
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=4.5e-06 Score=82.48 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=101.9
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccC-CC
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVR-PG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 243 (557)
..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++.......... ..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWLG 88 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhhh
Confidence 5688999888888776521 1123467999999999999999999997621 11111111111100 01
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCCC---CCCceEE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLDW---FTPRSTI 307 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~---~~~~~~I 307 (557)
........++ ......++.+|+||+++.. .....++..+.. ...+..|
T Consensus 89 ~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 89 ESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp SCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred HHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 1111111111 1122356789999999643 112233332221 2345556
Q ss_pred EEEeCChhhhhc---cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhhh
Q 008685 308 IITTRDKQVLRN---WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVLG 376 (557)
Q Consensus 308 iiTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a 376 (557)
|.||..+..... ......+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666654432111 022357888999999999998876633221 11256678899999887 44455554
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.52 E-value=6.8e-07 Score=92.26 Aligned_cols=175 Identities=17% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCccccchhH---HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRV---EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l---~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|.+..+ ..|...+..+ ....+.|+|++|+||||||+.+++.....|. -+. . . ..+...+. .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~-a--~---~~~~~~ir-~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS-A--V---TSGVKEIR-E 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE-T--T---TCCHHHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE-e--c---cCCHHHHH-H
Confidence 6799999888 6777777643 3467999999999999999999998643321 111 1 0 22222221 1
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH--HHHHHHhccCCCCCCceEEEE-EeCChhh--h-hccccceE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF--NQIESLIGSLDWFTPRSTIII-TTRDKQV--L-RNWGVKKI 325 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~Iii-TsR~~~~--~-~~~~~~~~ 325 (557)
++.... .....+++.+|+||+++.. .....|+..+.. ....+|. ||.+... . ........
T Consensus 94 ~~~~a~------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 94 AIERAR------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HHHHHH------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HHHHHH------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeE
Confidence 111110 1112456889999999643 233444444432 2334444 4444421 1 11233468
Q ss_pred EEcccCCHHHHHHHHHhccccCC-----CCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 326 YEMEALEYDHALELFSRHAFKQI-----HPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 326 ~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
+.+.+++.++..+++...+.... ......++....|++.++|++-.+..+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 89999999999999988764311 111234677888999999998765543
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.51 E-value=9.9e-07 Score=87.42 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=103.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLS 254 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 254 (557)
..++|.+..++.|..++..+ ....++.++|++|+|||++|+.+++.+... .+.+. . + ..+...+ ...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~--~~~~~~i-~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---S--DCKIDFV-RGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---T--TCCHHHH-HTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---c--ccCHHHH-HHHHH
Confidence 67999999999999998754 234678899999999999999999886321 22222 1 1 1222222 22222
Q ss_pred HHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH---HHHHHhccCCCCCCceEEEEEeCChhhh-hc-cccceEEEcc
Q 008685 255 KLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN---QIESLIGSLDWFTPRSTIIITTRDKQVL-RN-WGVKKIYEME 329 (557)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~IiiTsR~~~~~-~~-~~~~~~~~l~ 329 (557)
....... ..+++.++++|+++... ....+...+.....+..+|+||....-. .. ......++++
T Consensus 95 ~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~ 163 (324)
T 3u61_B 95 NFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFG 163 (324)
T ss_dssp HHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECC
T ss_pred HHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeC
Confidence 1111100 12367899999997643 4444444443334567888888765321 11 1223579999
Q ss_pred cCCHHHHHHH-------HHhccccCCCCCCChH-HHHHHHHHHcCCCchhhH
Q 008685 330 ALEYDHALEL-------FSRHAFKQIHPAVGYE-ELSSKVMEYAQGVPLALK 373 (557)
Q Consensus 330 ~L~~~ea~~L-------~~~~~~~~~~~~~~~~-~~~~~i~~~~~G~PLal~ 373 (557)
+++.++-.++ +...+...... ..+ +....+++.++|++-.+.
T Consensus 164 ~~~~~e~~~il~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 164 QPTDEDKIEMMKQMIRRLTEICKHEGIA--IADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTCC--BSCHHHHHHHHHHTCSCTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHhCCCCHHHHH
Confidence 9998874333 22222221111 113 778889999999876443
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.49 E-value=4.4e-06 Score=84.96 Aligned_cols=180 Identities=18% Similarity=0.142 Sum_probs=99.7
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCC-C
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRP-G 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~ 243 (557)
..++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.+++..... ++..+........ .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~~~g 190 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSKYVG 190 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhccccc
Confidence 6799999999999987721 11234679999999999999999998875322 2221111110000 0
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCC----CCCCceE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLD----WFTPRST 306 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~----~~~~~~~ 306 (557)
....... ..+.......+.+|+||+++.. .....++..+. .......
T Consensus 191 ~~~~~~~----------------~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 191 EGEKLVR----------------ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -CHHHHH----------------HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred hHHHHHH----------------HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0001111 1111112345679999999543 11122222211 1123445
Q ss_pred EEEEeCChhhhhc--c-ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCch-hhHhhh
Q 008685 307 IIITTRDKQVLRN--W-GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPL-ALKVLG 376 (557)
Q Consensus 307 IiiTsR~~~~~~~--~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~a 376 (557)
||.||.....+.. . .....+.++..+.++-.+++...+...... ...+....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666655322111 1 122468899999999999998776332221 235677889999988654 555544
No 50
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.47 E-value=6e-06 Score=85.34 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=105.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccc
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREES 239 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 239 (557)
|...-..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++... ...++. +.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~-v~--- 200 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFS-IS--- 200 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEE-EC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEE-Ee---
Confidence 333336799999999999876621 112346799999999999999999999762 112221 10
Q ss_pred cCCCChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH-------------HHHHHHhccCCCC---C
Q 008685 240 VRPGGLACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF-------------NQIESLIGSLDWF---T 302 (557)
Q Consensus 240 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~---~ 302 (557)
...+ .....+. .......+.... ..++.+|+||+++.. .....++..+... .
T Consensus 201 --~~~l-------~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 201 --SSDL-------VSKWLGE--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp --CC------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred --HHHH-------Hhhhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 0000 0011111 011122222222 356889999999643 2234555554432 3
Q ss_pred CceEEEEEeCChhhhhc--c-ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhhh
Q 008685 303 PRSTIIITTRDKQVLRN--W-GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVLG 376 (557)
Q Consensus 303 ~~~~IiiTsR~~~~~~~--~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a 376 (557)
.+..||.||..+..+.. . .....+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566767765432111 0 12357788888888888888877633221 11246677888888884 44555443
No 51
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.43 E-value=7.6e-06 Score=81.33 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred chhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCC---------------------ceEEEEeccccc
Q 008685 181 ESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFE---------------------GSCFLQNVREES 239 (557)
Q Consensus 181 ~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 239 (557)
+...+.|...+..+ .-.+.+.++|++|+|||++|+.+++.+..... ...++. .....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccC
Confidence 44556676666543 23567899999999999999999998653321 111111 00000
Q ss_pred cCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-h
Q 008685 240 VRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ-V 316 (557)
Q Consensus 240 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~ 316 (557)
. ..+...+ +.+...+... -..+++-++|+|+++. .+....++..+....+++.+|++|.+.. +
T Consensus 86 ~-~~~i~~i-r~l~~~~~~~------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 86 N-TLGVDAV-REVTEKLNEH------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp S-SBCHHHH-HHHHHHTTSC------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred C-CCCHHHH-HHHHHHHhhc------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 0 0111111 1111111100 0124577999999964 3455666666655556778777777653 2
Q ss_pred hhc-cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhh
Q 008685 317 LRN-WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLG 376 (557)
Q Consensus 317 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 376 (557)
.+. ......+++++++.++..+.+.... ...++.+..+++.++|.|..+..+.
T Consensus 152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cHHHhhcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 222 2345689999999999999998875 1125667889999999997665544
No 52
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.2e-05 Score=80.26 Aligned_cols=179 Identities=12% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEeccccccCCCChHHHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQNVREESVRPGGLACLQLKLL 253 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 253 (557)
..++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+. +. ..+...+. ..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~-~~~~~~ir-~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SD-DRGIDVVR-NQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TS-CCSHHHHH-THH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cc-cccHHHHH-HHH
Confidence 56789998999998888654 22238999999999999999999986432 2211111111 11 12222221 122
Q ss_pred HHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCChh-hhhc-cccceEEEcc
Q 008685 254 SKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDKQ-VLRN-WGVKKIYEME 329 (557)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~~-~~~~-~~~~~~~~l~ 329 (557)
..+..... ...+.+-++|+|+++. ......+...+......+.+|++|.... +... ......+.+.
T Consensus 98 ~~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 98 KDFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 21111000 0123467899999953 3344444444433345677777775542 1111 1234578999
Q ss_pred cCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhh
Q 008685 330 ALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLAL 372 (557)
Q Consensus 330 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 372 (557)
+++.++..+.+...+-.... ...++..+.+++.++|.+--+
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 99999999888776522221 122567788999999998743
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.38 E-value=9.9e-06 Score=79.24 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=98.9
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..++|.+..+++|.+.+.. +-...+.+.|+|++|+|||+||+.++......| +.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------
Confidence 5689999988888876642 123456799999999999999999998764211 1111
Q ss_pred ChHHHHHHHHHHHhcCCccccCH-HHHHHHHccCceEEEEcCCCCHH----------------HHHHHhccCCC--CCCc
Q 008685 244 GLACLQLKLLSKLLQDNNVILNI-ALSFRRLSRRKVLIVFDDVSCFN----------------QIESLIGSLDW--FTPR 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~~ 304 (557)
... +.....+... ... ..+.......+.+|+||+++... ....++..+.. ...+
T Consensus 82 -~~~----l~~~~~g~~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 82 -GPE----LLTMWFGESE--ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp -HHH----HHHHHHTTCT--THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred -hHH----HHhhhcCchH--HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 111 1122222111 112 22222334568999999996421 12333332221 1245
Q ss_pred eEEEEEeCChhhhhc--c---ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchh
Q 008685 305 STIIITTRDKQVLRN--W---GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLA 371 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 371 (557)
..||.||.....+.. . .....+.++..+.++-.+++...+........ .....++..+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 667777765532211 1 12357899999999988888776533221111 1134566677776643
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.37 E-value=1.4e-06 Score=78.27 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 67999999999999988653 3456789999999999999999998754
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.35 E-value=1.4e-05 Score=79.42 Aligned_cols=262 Identities=15% Similarity=0.139 Sum_probs=135.1
Q ss_pred CCccccchhHHHHHHhhccc---CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 175 NQLVGVESRVEEIESLLGVE---WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
..++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. .. .... ......+. .
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~-sg~~---~~~~~~l~-~ 95 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT-SGPV---LVKQGDMA-A 95 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE-ETTT---CCSHHHHH-H
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE-echH---hcCHHHHH-H
Confidence 56889888888887766532 223467899999999999999999998743321 11 0000 11111110 0
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCC--------C----------CceEEEE-E
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWF--------T----------PRSTIII-T 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~--------~----------~~~~Iii-T 310 (557)
+...+ .++.++++|++.. ....+.+...+... + +...++- |
T Consensus 96 -----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 96 -----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp -----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred -----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 11111 2345778888743 22222222211100 0 1122332 3
Q ss_pred eCChhhhhcc--ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCchhhHhhhhhhcCCCHHHHH
Q 008685 311 TRDKQVLRNW--GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVPLALKVLGCFLFGREKEVWK 388 (557)
Q Consensus 311 sR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~w~ 388 (557)
++...+.... .......+++.+.++-.+++...+..... ....+.+..|++.++|.|-.+..+...+. .+.
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~-----~~a 230 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVR-----DML 230 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHH-----HHH
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHH-----HHH
Confidence 3332221111 11235789999999999999876532221 23367789999999999975544332221 000
Q ss_pred HHHHhhhcCChhhHHHHHHH---hhcCCChhhHHHHhhhhc-cc-CCCCHHHHHHHHHhcCCchhhcHH-HHhhCCCeEE
Q 008685 389 SAINKLKSILHPSIQEILKI---SYDGLDDKEKNIFLDVAC-FF-KGEDVYSVMKFLDASGFYPEIGIS-VLVDKSLIVI 462 (557)
Q Consensus 389 ~~l~~l~~~~~~~i~~~l~~---s~~~L~~~~k~~l~~la~-f~-~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~ 462 (557)
.. ..-.....+.+..++.. .-..++...+.++..++- |. .+...+.+......+....+...+ .|...|+++.
T Consensus 231 ~~-~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~ 309 (334)
T 1in4_A 231 TV-VKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLAR 309 (334)
T ss_dssp HH-HTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred HH-cCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeec
Confidence 00 00001111223333322 112456666666654443 32 225556666555443222222233 8999999999
Q ss_pred ccCCeEEcC
Q 008685 463 SNNDRITMH 471 (557)
Q Consensus 463 ~~~~~~~mH 471 (557)
...|+....
T Consensus 310 ~~~gr~~~~ 318 (334)
T 1in4_A 310 TPRGRIVTE 318 (334)
T ss_dssp ETTEEEECH
T ss_pred ccccHHhhH
Confidence 877776543
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.27 E-value=3e-06 Score=95.08 Aligned_cols=171 Identities=11% Similarity=0.070 Sum_probs=89.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEecccccc---CCCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESV---RPGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~---~~~~~ 245 (557)
.+++||+.++.++...|... ..+.+.|+|++|+|||+||+.+++.+.... ...++..+...... .....
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 247 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH
Confidence 67999999999999988653 234578999999999999999999874421 22222221111100 00001
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHc--cCceEEEEcCCCCHH---------H-HHHHhccCCCCCCceEEEEEeCC
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRLS--RRKVLIVFDDVSCFN---------Q-IESLIGSLDWFTPRSTIIITTRD 313 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~~~IiiTsR~ 313 (557)
... ...+...+. +++.+|++|+++... . ...+...+. ..+..+|.+|..
T Consensus 248 ~~~-----------------l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~ 308 (854)
T 1qvr_A 248 EER-----------------LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTL 308 (854)
T ss_dssp HHH-----------------HHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECH
T ss_pred HHH-----------------HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCc
Confidence 111 111222222 367899999996432 1 111222221 233455655543
Q ss_pred hhh-----hh-ccccceEEEcccCCHHHHHHHHHhccccC--CCCCCChHHHHHHHHHHcC
Q 008685 314 KQV-----LR-NWGVKKIYEMEALEYDHALELFSRHAFKQ--IHPAVGYEELSSKVMEYAQ 366 (557)
Q Consensus 314 ~~~-----~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 366 (557)
... .. .......+.+++++.++..+++....... ........+....+++.+.
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 321 01 11123458999999999999997543210 0111122455566666654
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.4e-05 Score=80.00 Aligned_cols=177 Identities=19% Similarity=0.228 Sum_probs=101.1
Q ss_pred CCCCCCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE 238 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 238 (557)
|.+.-..+.|-++..++|.+.+.- +-..++-|.++|++|+|||.||+++++.....| +.+. ....
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l 218 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAEL 218 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHh
Confidence 333335688999999988876531 223456799999999999999999999865432 1222 1111
Q ss_pred ccCCCC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC
Q 008685 239 SVRPGG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF 301 (557)
Q Consensus 239 ~~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 301 (557)
.....+ .....+.++. ..-...+++|++|+++.. ..+..++..+..+
T Consensus 219 ~sk~vGese~~vr~lF~----------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFV----------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp SCSSTTHHHHHHHHHHH----------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hccccchHHHHHHHHHH----------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 110111 1111222211 122356899999999531 1133444444322
Q ss_pred --CCceEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 302 --TPRSTIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 302 --~~~~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..+..||.||..++.+.. -.....+.++..+.++-.++|..+..+-..... -....|++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 234456667765543221 123468899988998888888776533221111 12567788887753
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=1.8e-06 Score=74.54 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 176 QLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.++|+...++++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 589999999999887754222334578999999999999999998653
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.6e-05 Score=75.84 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHhhcc---c-------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC-
Q 008685 175 NQLVGVESRVEEIESLLGV---E-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG- 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~---~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~- 243 (557)
..++|.+...+++.+.+.. . ....+-+.|+|++|+||||||+.+++.....| +.+. .........
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~~~ 87 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMFVG 87 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSCCC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHhhh
Confidence 6789999888877665421 0 11234588999999999999999998764322 2221 111100000
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCC--CCCce
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDW--FTPRS 305 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~~ 305 (557)
...... ...+.......+.++++|+++.. ..+..++..+.. ...+.
T Consensus 88 ~~~~~~----------------~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 88 VGASRV----------------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp CCHHHH----------------HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred hhHHHH----------------HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000000 11112222345789999998311 122333322221 12345
Q ss_pred EEEEEeCChhhhh-cc----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCC-CchhhHh
Q 008685 306 TIIITTRDKQVLR-NW----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQG-VPLALKV 374 (557)
Q Consensus 306 ~IiiTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 374 (557)
.||.||....... .. .....+.++..+.++-.+++..+.......+ ......++..+.| ++--|..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~---~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP---DIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc---cccHHHHHHHcCCCCHHHHHH
Confidence 6677776553221 11 1235778888888887777776542221111 1123456666666 5544443
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.21 E-value=1.3e-05 Score=83.38 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 248 (557)
.+++||+.+++.+...+... ...-+.|+|++|+|||+||+.+++.+...+ ...++..+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 67999999999999998653 233568999999999999999999875432 1111111010
Q ss_pred HHHHHHHHhcCCccccCHHHHH-HHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhh---hh----cc
Q 008685 249 QLKLLSKLLQDNNVILNIALSF-RRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQV---LR----NW 320 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~---~~----~~ 320 (557)
....+. .......+. ..-..++.+|++| ...+....+.+.+. ....++|.+|..... .. ..
T Consensus 246 -----~~~~g~--~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----ccccch--HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000000 001122222 2223567899999 22223333444443 234556665554431 00 11
Q ss_pred ccceEEEcccCCHHHHHHHHHhcc
Q 008685 321 GVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 321 ~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.....+.+++.+.++..+++....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998765
No 61
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.3e-05 Score=79.84 Aligned_cols=175 Identities=18% Similarity=0.251 Sum_probs=99.6
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccccc
Q 008685 172 VNNNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESV 240 (557)
Q Consensus 172 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 240 (557)
+.-..+.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +.........
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcc
Confidence 3335678999988888775532 223467899999999999999999999865432 2221221111
Q ss_pred CCCC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC--
Q 008685 241 RPGG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF-- 301 (557)
Q Consensus 241 ~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~-- 301 (557)
...+ .......++ ...-...+++|++|+++.. ..+..++..+..+
T Consensus 254 k~~Gese~~ir~~F----------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 KYIGESARIIREMF----------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp SSSSHHHHHHHHHH----------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ccchHHHHHHHHHH----------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0111 111111111 1122457899999999521 1133444443322
Q ss_pred CCceEEEEEeCChhhhhc----c-ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 302 TPRSTIIITTRDKQVLRN----W-GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 302 ~~~~~IiiTsR~~~~~~~----~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
..+..||.||-.+..+.. . .....+.++..+.++-.++|..+..+-..... -....|++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCC
Confidence 234567777765543221 1 13467888888888888888776533221111 12467778887753
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.13 E-value=1.6e-05 Score=82.75 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=99.1
Q ss_pred CCccccchhHHHHHHhhccc-----------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGVE-----------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..++|.+..+++|.+++... ....+-+.|+|++|+|||+||+.+++.... .+...+.........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 46899999999998877531 234567899999999999999999887522 122211111111000
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCCC--CCCceEEE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLDW--FTPRSTII 308 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~~Ii 308 (557)
+ ..... + ...+.....+++.+|+||+++.. .....|+..+.. ...+..||
T Consensus 280 g--~~~~~-~------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 280 G--ESESN-L------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp T--HHHHH-H------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred c--hhHHH-H------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 0 00000 0 12222333466789999999311 112233322221 12345666
Q ss_pred EEeCChhhhh-c----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC-chhhHhh
Q 008685 309 ITTRDKQVLR-N----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV-PLALKVL 375 (557)
Q Consensus 309 iTsR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 375 (557)
.||.....+. . ......+.++..+.++-.+++..++....... ......+++.+.|. +-.|..+
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHH
Confidence 6666553211 1 12235789999999999999988763322111 11245667777764 4344433
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=8.3e-05 Score=75.56 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccccc
Q 008685 172 VNNNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESV 240 (557)
Q Consensus 172 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 240 (557)
+.-..+.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +.+. ......
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~s 281 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQ 281 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhc
Confidence 3335688999999988875421 224567899999999999999999999865432 1121 111111
Q ss_pred CCCC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC--
Q 008685 241 RPGG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF-- 301 (557)
Q Consensus 241 ~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~-- 301 (557)
...+ .....+.++ ...-...+++|++|+++.. ..+..++..+...
T Consensus 282 k~vGesek~ir~lF----------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 KYVGEGARMVRELF----------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CSSSHHHHHHHHHH----------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ccCCHHHHHHHHHH----------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0111 111111111 1222356899999999531 0122333333222
Q ss_pred CCceEEEEEeCChhhhhc----c-ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 302 TPRSTIIITTRDKQVLRN----W-GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 302 ~~~~~IiiTsR~~~~~~~----~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
..+..||.||-....+.. . .....+.++..+.++-.++|..++..-..... -....|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCC
Confidence 234455666654433211 1 23568889888888888888776533221111 1246778888875
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.7e-05 Score=79.11 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCC
Q 008685 174 NNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRP 242 (557)
Q Consensus 174 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 242 (557)
-..+.|-++..++|.+.+.. +-..++-+.++|++|+|||.||+++++.....| +.+. ........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchhhccc
Confidence 35678999998888775531 223467799999999999999999999865432 1121 21111101
Q ss_pred CC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCC--CCC
Q 008685 243 GG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDW--FTP 303 (557)
Q Consensus 243 ~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~ 303 (557)
.+ .......++. ..-...++++++|+++.. ..+..++..+.. ...
T Consensus 247 ~Ge~e~~ir~lF~----------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 247 LGEGPRMVRDVFR----------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp CSHHHHHHHHHHH----------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cchhHHHHHHHHH----------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 11 1111112211 122356899999999311 113334433332 134
Q ss_pred ceEEEEEeCChhhhhc----c-ccceEEEcccCCHHHH-HHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 304 RSTIIITTRDKQVLRN----W-GVKKIYEMEALEYDHA-LELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 304 ~~~IiiTsR~~~~~~~----~-~~~~~~~l~~L~~~ea-~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
+..||.||..+..+.. . .....++++.++..++ ..+|..+..+-...+ ......|++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~---~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP---EADLDSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCT---TCCHHHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHHCCCC
Confidence 4566777765533211 1 2335678876655444 455554442221111 11246777777775
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.08 E-value=2.4e-05 Score=76.69 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHhhcc------------cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGV------------EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~------------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999988877643 112345688999999999999999998873
No 66
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.04 E-value=1.3e-05 Score=71.87 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=31.0
Q ss_pred cchhHHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 180 VESRVEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 180 R~~~l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....++.+.+++.. .......+.|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444445444432 112356899999999999999999999875
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=4.4e-05 Score=84.69 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc------CCceEEEEecccccc---CCCCh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD------FEGSCFLQNVREESV---RPGGL 245 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~~~~~ 245 (557)
.+++||+.+++++.+.|... ...-+.|+|++|+|||++|+.+++.+... ....++......... .....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 67999999999999998753 34457899999999999999999886432 122333221111100 01111
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------HHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 246 ACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------NQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 246 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
..... .+.+.+ ..++.+|++|+++.. .....++..+.. .....+|.+|...
T Consensus 264 e~~l~-----------------~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~ 325 (758)
T 1r6b_X 264 EKRFK-----------------ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQ 325 (758)
T ss_dssp HHHHH-----------------HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHH
T ss_pred HHHHH-----------------HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCch
Confidence 11111 122222 235789999999643 223333333221 2345666666543
Q ss_pred hhhh-------ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 315 QVLR-------NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 315 ~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.... .......+.+++.+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 2110 11223478999999999988887654
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=5.2e-05 Score=77.09 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=99.2
Q ss_pred CCCCCCCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEecccc
Q 008685 170 PCVNNNQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREE 238 (557)
Q Consensus 170 p~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 238 (557)
|.+.-..+.|-++..++|.+.+.. +-..++-|.++|++|+|||.||++++......| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 333336688999999988875421 223467899999999999999999999865432 22212211
Q ss_pred ccCCCC-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC
Q 008685 239 SVRPGG-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF 301 (557)
Q Consensus 239 ~~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 301 (557)
.....+ .....+.++. ..-...+++|++|+++.. ..+..++..+..+
T Consensus 252 ~~~~vGese~~ir~lF~----------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFA----------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSCSSHHHHHHHHHHH----------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hhcccchHHHHHHHHHH----------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 110111 1111222211 122346899999999421 0123344444433
Q ss_pred C--CceEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 302 T--PRSTIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 302 ~--~~~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
. .+..||.||..+..+.. -.....+.++..+.++-.++|..+..+-..... -....|++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---vdl~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD---INWQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC---CCHHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCC
Confidence 3 33455667765543221 123467889888888888888766533221111 1146677888775
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.8e-05 Score=75.96 Aligned_cols=171 Identities=17% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.++..++|.+.+.. +-...+-|.++|++|+|||.||++++......|- .+. .........
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhccC
Confidence 5578899988888775421 2234577999999999999999999998654321 111 111111011
Q ss_pred C-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC--CCc
Q 008685 244 G-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF--TPR 304 (557)
Q Consensus 244 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~ 304 (557)
+ .....+.++. ..-...+++|++|+++.. ..+..++..+... ..+
T Consensus 258 Gesek~ir~lF~----------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 258 GDGPRLCRQIFK----------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp SHHHHHHHHHHH----------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred chHHHHHHHHHH----------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 1 1112222211 122356899999998521 1223333333222 234
Q ss_pred eEEEEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 305 STIIITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
..||.||-....+.. + .....+.++.-+.++-.++|..++..-..... -....|++.+.|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCC
Confidence 456667765543321 1 23457888888888888888776533221111 1246677777775
No 70
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=2.2e-05 Score=71.75 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=39.4
Q ss_pred CCccccch----hHHHHHHhhcccCCC--cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 175 NQLVGVES----RVEEIESLLGVEWED--VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 175 ~~~vGR~~----~l~~l~~~L~~~~~~--~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|++.+. .++.+..++...... .+.+.|+|++|+|||+||+.+++........++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45676543 344445555432211 268899999999999999999998876555555553
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.99 E-value=2.4e-06 Score=82.05 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCccccchhHHHHHHhhcc----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+..++.|.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-. +. ......
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~---- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE---- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH----
Confidence 6799999998888876541 11123347899999999999999999986543221 10 000000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH-----------------HHHHHhccCCCCC---Cc
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN-----------------QIESLIGSLDWFT---PR 304 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~---~~ 304 (557)
.......... ...+......++.+|+||+++... .+..++..+.... ..
T Consensus 83 ----------~~~~~~~~~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 83 ----------MFVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp ----------SCSSSCSSSS-STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred ----------hhcchHHHHH-HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 0000000000 112222233467899999995421 1223333332211 22
Q ss_pred eEEEEEeCChhhhh-cc----ccceEEEcccCCHHHHHHHHHhcc
Q 008685 305 STIIITTRDKQVLR-NW----GVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 305 ~~IiiTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
..||.||.....+. .. .....+.++..+.++-.+++...+
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 45666666553221 11 122457778888888788777655
No 72
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.98 E-value=4.9e-05 Score=74.48 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhccc------C-CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE------W-EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~------~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+..++.+...+... + .....+.|+|++|+|||++|+.++......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 56889999988888777542 1 123579999999999999999999987543
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.96 E-value=4.2e-05 Score=84.79 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=82.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccC------CceEEEEeccccccCCCChHHH
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF------EGSCFLQNVREESVRPGGLACL 248 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 248 (557)
.+++||+.+++++...+... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 67999999999999998653 233478999999999999999999874321 112221100
Q ss_pred HHHHHHHHhcCCccccCHHH-HHHHHccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhh---h----cc
Q 008685 249 QLKLLSKLLQDNNVILNIAL-SFRRLSRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVL---R----NW 320 (557)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~---~----~~ 320 (557)
.....+ ........ +......++.+|++| ...+....+.+.+. ....++|.||...... . ..
T Consensus 245 ----g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ----GTKYRG--EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ----cccccc--hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000 01111222 222334577899999 22233333444443 3345666666544310 0 01
Q ss_pred ccceEEEcccCCHHHHHHHHHhcc
Q 008685 321 GVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 321 ~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.....+.+++.+.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998654
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.96 E-value=3.2e-05 Score=75.65 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|+...+.++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4689999999999887765323345688999999999999999998653
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=8.8e-05 Score=72.32 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=89.7
Q ss_pred ccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh---ccCCceEEEEeccccccCCCChHHHHHHHHHH
Q 008685 179 GVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS---SDFEGSCFLQNVREESVRPGGLACLQLKLLSK 255 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 255 (557)
|-+..++.|...+..+. .+...++|++|+|||++|..+++... ...+....+. ... . ..+...+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~-~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG--E-NIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--S-CBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--C-CCCHHHH-HHHHHH
Confidence 34566777888876543 67899999999999999999987532 1123333332 100 0 1222222 223332
Q ss_pred HhcCCccccCHHHHHHHHccCceEEEEcCCCC--HHHHHHHhccCCCCCCceEEEEEeCCh-hhhhccccceEEEcccCC
Q 008685 256 LLQDNNVILNIALSFRRLSRRKVLIVFDDVSC--FNQIESLIGSLDWFTPRSTIIITTRDK-QVLRNWGVKKIYEMEALE 332 (557)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~IiiTsR~~-~~~~~~~~~~~~~l~~L~ 332 (557)
..... ..+++-++|+|+++. ......++..+....+.+.+|++|.++ .+.+..... .+++.+++
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 22110 123567999999954 455666766666556778887777554 344433334 89999999
Q ss_pred HHHHHHHHHhcc
Q 008685 333 YDHALELFSRHA 344 (557)
Q Consensus 333 ~~ea~~L~~~~~ 344 (557)
.++..+.+....
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 76
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.90 E-value=0.00013 Score=75.27 Aligned_cols=173 Identities=13% Similarity=0.164 Sum_probs=95.8
Q ss_pred CCccccchhHHHHHHhhcc--c--------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV--E--------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~--------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+..++++.+.... . ....+-+.|+|++|+|||+||+.++......| +.+. .........+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHhc
Confidence 5689999888777765432 0 11234588999999999999999998764322 1221 2111110111
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCC--CCceE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWF--TPRST 306 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ 306 (557)
.. ..-. ...+.......+.+|+||+++.. ..+..++..+..+ ..+..
T Consensus 92 ~~---~~~~------------r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 92 VG---AARV------------RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp HH---HHHH------------HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred cc---HHHH------------HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 00 0000 12223334467899999999431 1233444332211 23556
Q ss_pred EEEEeCChhhhhc--c---ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 307 IIITTRDKQVLRN--W---GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 307 IiiTsR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
||.||..+..+.. . .....+.++..+.++-.+++..++........ .....+++.+.|+.
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCc
Confidence 6777766543321 1 12347888888888877888766533221111 11455888888887
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.82 E-value=3.4e-05 Score=73.85 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|.+..+..+.+.+..-......+.|+|++|+|||+||+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 46899999998887766542223356889999999999999999987543
No 78
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.78 E-value=2.5e-05 Score=67.62 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
....++|+|+.|+|||||++.++......-...+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3458999999999999999999998765322245543
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.78 E-value=0.00012 Score=80.94 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=83.9
Q ss_pred CCccccchhHHHHHHhhcccC-------CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHH
Q 008685 175 NQLVGVESRVEEIESLLGVEW-------EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLAC 247 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~-------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (557)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.........+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999999988887765311 12337999999999999999999998754333333333 22222201111
Q ss_pred HHHHHHHHHhcCCccccCHHHHHHHHc-cCceEEEEcCCCC--HHHHHHHhccCCC-----------CCCceEEEEEeCC
Q 008685 248 LQLKLLSKLLQDNNVILNIALSFRRLS-RRKVLIVFDDVSC--FNQIESLIGSLDW-----------FTPRSTIIITTRD 313 (557)
Q Consensus 248 l~~~ll~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~--~~~~~~l~~~l~~-----------~~~~~~IiiTsR~ 313 (557)
...+...++ ....+|+||+++. ......|+..+.. ......||+||..
T Consensus 568 ------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000111111 2345999999953 3333333332221 1234678888873
Q ss_pred h-----------------hhhhccccceEEEcccCCHHHHHHHHHhcc
Q 008685 314 K-----------------QVLRNWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 314 ~-----------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
. .+... ....+.+++++.++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 1 11111 12588999999998888887654
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.75 E-value=9.4e-06 Score=69.83 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
-.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 458999999999888775422233458899999999999999988754
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.72 E-value=0.0014 Score=67.85 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=58.4
Q ss_pred eEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEe---------CC----h-hhh-hccccceEEEcccCCHHHHHHHH
Q 008685 278 VLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITT---------RD----K-QVL-RNWGVKKIYEMEALEYDHALELF 340 (557)
Q Consensus 278 ~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTs---------R~----~-~~~-~~~~~~~~~~l~~L~~~ea~~L~ 340 (557)
-++++|+++ +.+....++..+...... .+|+.| .+ + .+. ........+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 389999995 445677777666544444 344344 21 1 111 11223456799999999999999
Q ss_pred HhccccCCCCCCChHHHHHHHHHHc-CCCchhhHhh
Q 008685 341 SRHAFKQIHPAVGYEELSSKVMEYA-QGVPLALKVL 375 (557)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~ 375 (557)
..++..... ...++....|++.+ +|.|.....+
T Consensus 376 ~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 877532221 12256778888888 8888654443
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.69 E-value=0.00018 Score=78.77 Aligned_cols=172 Identities=15% Similarity=0.184 Sum_probs=96.4
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|-++.+++|.+.+.- +-..++-|.++|++|+|||+||+++++..... ++..+.........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4578999999888876521 12346789999999999999999999875432 22221111100000
Q ss_pred C-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCCCCC--CceEE
Q 008685 244 G-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLDWFT--PRSTI 307 (557)
Q Consensus 244 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~~~~I 307 (557)
+ .....+ ..+.......+.+|+||+++.. ..+..++..+.... .+..|
T Consensus 280 gese~~lr----------------~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 280 GESESNLR----------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp THHHHHHH----------------HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred hHHHHHHH----------------HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 111111 1122223467899999999431 11233333322211 23345
Q ss_pred EEEeCChhhhh-cc----ccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 308 IITTRDKQVLR-NW----GVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 308 iiTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
|.||....... .+ .....++++..+.++-.++|..+..+..... ......|++.+.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCC
Confidence 55655443221 11 2346789999899988888887763322111 122567888888774
No 83
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.64 E-value=0.00057 Score=64.72 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=86.6
Q ss_pred CCccccchhHHHHHHhhcc--c--------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV--E--------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~--------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++..... ..+.+. ..........
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~~ 91 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFVG 91 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSCTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHHhh
Confidence 5688888776666554321 0 011223899999999999999999987642 222222 1100000000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------------HHHHHHhccCCCCC--Cce
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------------NQIESLIGSLDWFT--PRS 305 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~~~ 305 (557)
. .. . ....+.+.. ...+.++++|+++.. ..+..++..+.... ...
T Consensus 92 ~--~~-~-------------~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 92 V--GA-A-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp H--HH-H-------------HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred H--HH-H-------------HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 0 00 0 011122222 235689999999321 11223333332111 223
Q ss_pred EEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 306 TIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.++.||..+..... ......+.++..+.++-.+++...+.+..... ......+++.+.|+-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc---ccCHHHHHHHcCCCC
Confidence 44556666544321 12345788888888888888776542211111 111345666666653
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.58 E-value=0.00054 Score=65.91 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCccccchhHHHHHHhhccc-C---------CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGVE-W---------EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-~---------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+...+++.+....- . .-.+-+.|+|++|+|||||++.++..... ..+.+. ..........
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~~ 115 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFVG 115 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSTTT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHHhh
Confidence 67889888777776544210 0 11223899999999999999999987642 222222 1100000000
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------------HHHHHHhccCCCCC--Cce
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------------NQIESLIGSLDWFT--PRS 305 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~~~ 305 (557)
. .. . ....+.+.. ...+.++++||++.. ..+..++..+.... ...
T Consensus 116 ~--~~-~-------------~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 116 V--GA-A-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp H--HH-H-------------HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred H--HH-H-------------HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 0 00 0 011122222 245689999999321 11233333333222 123
Q ss_pred EEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 306 TIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 306 ~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
.++.||..+..+.. ......+.++..+.++-.+++..++....... ......++..+.|+.
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc---ccCHHHHHHHcCCCC
Confidence 44556665544221 12345788888888888888876542211111 112345666666654
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.57 E-value=0.00041 Score=67.28 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=24.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.++.+.|+|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999999999999999874
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.54 E-value=0.00071 Score=70.30 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCccccchhHHHHHHhhcc--cC--------CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCC
Q 008685 175 NQLVGVESRVEEIESLLGV--EW--------EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGG 244 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~--~~--------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 244 (557)
..++|.+..+.++.+.... .. .-.+-+.|+|++|+|||+||+.++..... ..+.+. .........+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~~~g 106 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFVG 106 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSSCTT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHhhhh
Confidence 6799999887777665421 10 11234899999999999999999987642 222222 1111110011
Q ss_pred hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH----------------HHHHHHhccCCCCC--CceE
Q 008685 245 LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF----------------NQIESLIGSLDWFT--PRST 306 (557)
Q Consensus 245 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~~~~ 306 (557)
. ....+..+.... -...+.++++|+++.. ..+..++..+..+. ....
T Consensus 107 ~---~~~~v~~lfq~a------------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vi 171 (499)
T 2dhr_A 107 V---GAARVRDLFETA------------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 171 (499)
T ss_dssp H---HHHHHHHHTTTS------------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCE
T ss_pred h---HHHHHHHHHHHH------------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEE
Confidence 0 011111111110 0124689999999421 12334444333222 2334
Q ss_pred EEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCCc
Q 008685 307 IIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGVP 369 (557)
Q Consensus 307 IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 369 (557)
++.||..+..+.. ......+.++..+.++-.+++..++.+..... ......|+..+.|+.
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~---dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 236 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC---SSTTHHHHTTSCSCC
T ss_pred EEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHhcCCCC
Confidence 5556665544321 11235788998899888888877653221111 122456777777776
No 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.50 E-value=0.002 Score=61.74 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=79.0
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|-++..++|.+.+.. +-.-.+-++|+|++|+||||||+.++..... ..+.+. ..... ..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~--~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELL--NM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTC--SS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHH--hh
Confidence 4577777777777654311 0011223999999999999999999987543 223332 11111 11
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH-------------HHHHHHhccCCCC--CCceEE
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF-------------NQIESLIGSLDWF--TPRSTI 307 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~I 307 (557)
...... ..+. .+.+.. ...+.++++|+++.. .....++..+... ....-+
T Consensus 84 ~~~~~~-~~i~-------------~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 84 YVGESE-RAVR-------------QVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp TTHHHH-HHHH-------------HHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred hhhHHH-HHHH-------------HHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 111111 1111 111221 345789999999531 1122222222211 123445
Q ss_pred EEEeCChhhhhcc-----ccceEEEcccCCHHHHHHHHHhcc
Q 008685 308 IITTRDKQVLRNW-----GVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 308 iiTsR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
+.+|..+..+... .....+.++..+.++-.+++....
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 6667666543221 234678888888888888887765
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.50 E-value=0.00056 Score=75.85 Aligned_cols=151 Identities=14% Similarity=0.199 Sum_probs=83.7
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..++|.+..+++|.+++.. +-.....+.|+|++|+||||||+.++......| +.+. .........
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~~ 279 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKLA 279 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhhh
Confidence 5689999999999887642 123356799999999999999999998754322 2222 111110000
Q ss_pred C-hHHHHHHHHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCH-------------HHHHHHhccCCC--CCCceEE
Q 008685 244 G-LACLQLKLLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCF-------------NQIESLIGSLDW--FTPRSTI 307 (557)
Q Consensus 244 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~~I 307 (557)
+ ..... ...+.......+.++++|+++.. .....++..+.. ...+..+
T Consensus 280 g~~~~~l----------------~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 280 GESESNL----------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp THHHHHH----------------HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred hhHHHHH----------------HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 0 01111 11112222346789999999311 111222222111 1234455
Q ss_pred EEEeCChhhhhc-c----ccceEEEcccCCHHHHHHHHHhccc
Q 008685 308 IITTRDKQVLRN-W----GVKKIYEMEALEYDHALELFSRHAF 345 (557)
Q Consensus 308 iiTsR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~ 345 (557)
|.||.....+.. . .....+.+...+.++-.+++...+.
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 556655422211 1 1235678888899999898887653
No 89
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=0.004 Score=65.76 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHhhcc----cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHH
Q 008685 176 QLVGVESRVEEIESLLGV----EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLK 251 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (557)
.++|-+...+.+.+.+.. .......+.|+|++|+||||||+.++......|-. +. ..... ....+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i~-~~~~~----~~~~~~g~ 153 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---IS-LGGVR----DESEIRGH 153 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---EC-CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---EE-ecccc----hhhhhhhH
Confidence 367877777766544321 11245689999999999999999999887433211 11 11100 00000000
Q ss_pred HHHHHhcCCccccCHHHHHHHHccCceEEEEcCCCCHH------HHHHHhccCCCCC---------------CceEEEEE
Q 008685 252 LLSKLLQDNNVILNIALSFRRLSRRKVLIVFDDVSCFN------QIESLIGSLDWFT---------------PRSTIIIT 310 (557)
Q Consensus 252 ll~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~l~~~~---------------~~~~IiiT 310 (557)
....+ +. ................-+++||+++... ....++..+.... ....||.|
T Consensus 154 ~~~~i-g~--~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 154 RRTYV-GA--MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp -------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred HHHHh-cc--CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 00000 00 0001121222222233488899995432 1233333332110 23456666
Q ss_pred eCChhhhh--ccccceEEEcccCCHHHHHHHHHhcc
Q 008685 311 TRDKQVLR--NWGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 311 sR~~~~~~--~~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
|....... .......+.+++++.++-.+++..+.
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 65543211 11223578999999999888887765
No 90
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.30 E-value=0.00072 Score=68.14 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+.|+|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 91
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.22 E-value=0.00034 Score=56.41 Aligned_cols=60 Identities=8% Similarity=-0.009 Sum_probs=46.8
Q ss_pred eEEEecccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHHh
Q 008685 2 MFFLSFRGEDTRDNFASHLFSALSQKSIETFIDDQLNRGDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKILD 80 (557)
Q Consensus 2 dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~ 80 (557)
.+||||+.+| . ...|...|...|+... | ..|+.|+++|++.++....|+||..|+..+.+
T Consensus 6 ~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 6 RLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp EEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred EEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 5899999998 2 4555555555566433 2 46889999999999999999999999988754
No 92
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.10 E-value=0.0011 Score=59.40 Aligned_cols=111 Identities=19% Similarity=0.118 Sum_probs=61.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH-------hc-CCcccc------
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL-------LQ-DNNVIL------ 264 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-------~~-~~~~~~------ 264 (557)
..|.|++..|.||||+|...+-+...+-..+.++...... . ..+...+...+.-.+ .. ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4667777777999999999999877766666666544321 1 222233332220000 00 000000
Q ss_pred -CHHHHHHHHccCc-eEEEEcCCC--------CHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 265 -NIALSFRRLSRRK-VLIVFDDVS--------CFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 265 -~~~~l~~~l~~k~-~LlVlDdv~--------~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
.....++.+...+ =|||||++. +.+.+-.++. .......||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECCCC
Confidence 1334445554444 499999983 2233333333 235678899999987
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.04 E-value=0.0013 Score=64.10 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=35.1
Q ss_pred hhHHHHHHhhcccCC-CcEEEEEeccCCCchhHHHHHHHHHhh-ccCCceEEEE
Q 008685 182 SRVEEIESLLGVEWE-DVYTLGIWGIGGIGKTTIAKAIFEKIS-SDFEGSCFLQ 233 (557)
Q Consensus 182 ~~l~~l~~~L~~~~~-~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 233 (557)
..++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445555543222 246789999999999999999999876 5544444443
No 94
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.0036 Score=69.22 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHhhccc-------CCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVE-------WEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56889999988887766431 1223578999999999999999999987
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.95 E-value=0.0026 Score=71.24 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHhhccc-------CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 176 QLVGVESRVEEIESLLGVE-------WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~~-------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999888887776431 112358999999999999999999998754
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.90 E-value=0.0028 Score=58.23 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|...+..+-....++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 34444533334456899999999999999999998 2234556654
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.0042 Score=57.47 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|..++..+-....+++|.|++|+|||||+..++......-..+.|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344444322223568999999999999999999977654333455543
No 98
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.68 E-value=0.021 Score=56.42 Aligned_cols=156 Identities=9% Similarity=-0.057 Sum_probs=98.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
-.++..++|+.|.||++.+..+...+.. .|+....+. .. . ..+...+...... .-+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~-~~~~~~l~~~~~~----------------~plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---P-NTDWNAIFSLCQA----------------MSLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---T-TCCHHHHHHHHHH----------------HHHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---C-CCCHHHHHHHhcC----------------cCCcc
Confidence 4568999999999999999999987643 343221111 11 1 2334433322211 11234
Q ss_pred CceEEEEcCCCC---HHHHHHHhccCCCCCCceEEEEEeCC-------hhhhhc-cccceEEEcccCCHHHHHHHHHhcc
Q 008685 276 RKVLIVFDDVSC---FNQIESLIGSLDWFTPRSTIIITTRD-------KQVLRN-WGVKKIYEMEALEYDHALELFSRHA 344 (557)
Q Consensus 276 k~~LlVlDdv~~---~~~~~~l~~~l~~~~~~~~IiiTsR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 344 (557)
.+-++|+|+++. .+..+.+...+....+++.+|+++.+ ..+... ......++..+++.++..+.+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 567889999854 34566666665555667777776643 123333 2345789999999999998888776
Q ss_pred ccCCCCCCChHHHHHHHHHHcCCCchhhHhh
Q 008685 345 FKQIHPAVGYEELSSKVMEYAQGVPLALKVL 375 (557)
Q Consensus 345 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 375 (557)
-..+.. ..++.+..+++.++|.+..+...
T Consensus 156 ~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 433221 22677889999999998877653
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.003 Score=61.10 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999986
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0038 Score=56.67 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=34.3
Q ss_pred cchhHHHHHHhhcc-cCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 180 VESRVEEIESLLGV-EWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 180 R~~~l~~l~~~L~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
|++.++.|.+.+.. ......+++|.|+.|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45566777666553 2345679999999999999999999887643
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.42 E-value=0.028 Score=49.72 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 102
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.36 E-value=0.0027 Score=63.05 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=64.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceE-EEEeccccccCCCChHHHHHHHHHHHhcCCccccC-HHHHHHHHcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC-FLQNVREESVRPGGLACLQLKLLSKLLQDNNVILN-IALSFRRLSR 275 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-~~~l~~~l~~ 275 (557)
..+++|.|+.|+|||||.+.+...+.......+ .+....+... ... . ....+.... ..... ...+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~-~----~~v~q~~~~-~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESK-K----CLVNQREVH-RDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCS-S----SEEEEEEBT-TTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hcc-c----cceeeeeec-cccCCHHHHHHHHhhh
Confidence 459999999999999999999887654433333 2221111100 000 0 000000000 00011 4577888888
Q ss_pred CceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhhh
Q 008685 276 RKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQVL 317 (557)
Q Consensus 276 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~~ 317 (557)
.+=+|++|...+.+.++.+.... ..|..||+|+......
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999999877766654432 2355688888876543
No 103
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.35 E-value=0.0031 Score=69.07 Aligned_cols=171 Identities=16% Similarity=0.256 Sum_probs=78.2
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCC
Q 008685 175 NQLVGVESRVEEIESLLGV-----------EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPG 243 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 243 (557)
..+.|.++..++|.+.+.. +....+-+.++|++|+|||.||++++...... ++. +.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v~------- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IK------- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-CC-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-ec-------
Confidence 5567888888888776532 11234568899999999999999999975432 221 10
Q ss_pred ChHHHHHHHHHHHhcCCccccCHHHHHHHH-ccCceEEEEcCCCCH----------------HHHHHHhccCCCCCC--c
Q 008685 244 GLACLQLKLLSKLLQDNNVILNIALSFRRL-SRRKVLIVFDDVSCF----------------NQIESLIGSLDWFTP--R 304 (557)
Q Consensus 244 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~--~ 304 (557)
. ..++....++.. .....+.+.. +..+++|+||+++.. ..+..|+..+..... +
T Consensus 544 -~----~~l~s~~vGese--~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 544 -G----PELLTMWFGESE--ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp -H----HHHHTTTCSSCH--HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred -c----chhhccccchHH--HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 0 112222111110 1122233333 357899999999421 013344444432222 2
Q ss_pred eEEEEEeCChhhhhc-----cccceEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHcCCC
Q 008685 305 STIIITTRDKQVLRN-----WGVKKIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYAQGV 368 (557)
Q Consensus 305 ~~IiiTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 368 (557)
.-||.||-.+..+.. -.....+.++.-+.++-.++|..+..+..... .-....|++.+.|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~---~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK---DVDLEFLAKMTNGF 682 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC---C-------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC---CCCHHHHHHhCCCC
Confidence 233434443332111 12345777877677777777776653222111 11245566666664
No 104
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.35 E-value=0.02 Score=56.65 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|...|. .+-....++.|.|++|+|||||+.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45556665 33345689999999999999999999988765544566765
No 105
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.32 E-value=0.0036 Score=57.12 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=31.0
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.+++|.+.+........+++|.|+.|+|||||++.++..+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344555554432345679999999999999999999987653
No 106
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.31 E-value=0.0026 Score=63.64 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHhhc-------------ccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 176 QLVGVESRVEEIESLLG-------------VEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~-------------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.++|.+..++.+...+. ........+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46888888888877662 111134578999999999999999999886
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.26 E-value=0.002 Score=57.66 Aligned_cols=27 Identities=26% Similarity=-0.033 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 478899999999999998888776433
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.20 E-value=0.0021 Score=56.90 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998754
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.17 E-value=0.0022 Score=63.27 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56999999999888777542 35889999999999999999987643
No 110
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.11 E-value=0.019 Score=54.32 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=61.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhc-CCccc-cC-HHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQ-DNNVI-LN-IALSFRRL 273 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~-~~-~~~l~~~l 273 (557)
...+++|+|+.|+|||||++.+...+...+...+.+....-... ...... + +.. ..... .. ...+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-~~~~~~----~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKKS----I---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSS----E---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-cCCcce----e---eeHHHhCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876544344444432110000 000000 0 000 00000 01 34555666
Q ss_pred ccCceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChhh
Q 008685 274 SRRKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQV 316 (557)
Q Consensus 274 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~~ 316 (557)
...+=++++|...+.+....++... ..|.-|++||.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6678899999998776655544332 235667888876543
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.93 E-value=0.0038 Score=54.80 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|.|++|+||||+|+.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998753
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.90 E-value=0.0081 Score=57.86 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.8
Q ss_pred CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 195 WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 195 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.....+|+|.|+.|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999887654
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=0.0046 Score=55.97 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....|+|.|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 114
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.83 E-value=0.0088 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998875
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.83 E-value=0.031 Score=54.74 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc------CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD------FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 233 (557)
.|..+|..+-....++.|+|++|+|||+||.+++...... -..++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3445554332345689999999999999999999875432 23556665
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.79 E-value=0.0046 Score=55.09 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.77 E-value=0.046 Score=53.99 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS------DFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 233 (557)
.|..+|..+-....++.|+|++|+|||+||..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344555444445789999999999999999999987433 223566665
No 118
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.77 E-value=0.0089 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..|.|.|++|+||||+|+.+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 119
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.76 E-value=0.043 Score=53.09 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=34.8
Q ss_pred hhHHHHHHhhccc------CCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 182 SRVEEIESLLGVE------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 182 ~~l~~l~~~L~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...++|.+.+... .....+++|+|++|+||||++..++..+...-..+.++
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3444555555331 13467999999999999999999998876543334443
No 120
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.75 E-value=0.0072 Score=56.63 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=29.1
Q ss_pred hhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 182 SRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 182 ~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+.++...+.........|+|.|++|+||||+|+.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333222356789999999999999999999765
No 121
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.74 E-value=0.0059 Score=60.50 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++|.+...+.+...+... ...-+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 56899988666554443322 123489999999999999999998764
No 122
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.71 E-value=0.0056 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.6
Q ss_pred EEEEEeccCCCchhHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 123
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.64 E-value=0.0098 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999874
No 124
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.62 E-value=0.0037 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=23.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987754433
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.60 E-value=0.0081 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|.|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.60 E-value=0.0067 Score=54.29 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=22.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 127
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.57 E-value=0.0095 Score=53.58 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=30.7
Q ss_pred hhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 182 SRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 182 ~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.-+..|..++..- ...+.+.|+|++|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456666666532 2345699999999999999999999874
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0071 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988653
No 129
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.55 E-value=0.0052 Score=63.86 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+.++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 56899999998888776532 3688999999999999999998763
No 130
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.55 E-value=0.035 Score=56.60 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=26.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC 230 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 230 (557)
+.++|+|.+|+|||||+..++.....++..++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 46899999999999999999988765554444
No 131
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.53 E-value=0.018 Score=56.20 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+..|..++ .+-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 33444444 33345679999999999999999999987665445566654
No 132
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.52 E-value=0.014 Score=52.05 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...+|.|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887643
No 133
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.51 E-value=0.0061 Score=53.51 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEeccCCCchhHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAI 218 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~ 218 (557)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.013 Score=54.76 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=32.2
Q ss_pred HhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 189 SLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 189 ~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.|..+-....++.|.|++|+||||||.+++......-..++|+.
T Consensus 14 ~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 14 EILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344332234568999999999999999999877655445566664
No 135
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.47 E-value=0.061 Score=46.59 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=65.8
Q ss_pred ccccccCchHHHHHHHHhhCCCceEeeC-CCC----C----CCcchHHHHHHHHhhceEEEEecCCccCchhhHHHHHHH
Q 008685 8 RGEDTRDNFASHLFSALSQKSIETFIDD-QLN----R----GDEISESLMNAIEASAISLIIFSEGYASSRWCLDELLKI 78 (557)
Q Consensus 8 ~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~----~----g~~~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~ 78 (557)
..+|. ....-|...-....+-.|.|. +.. . -+.|...+.+.|..|+.+|+++|++...|.|-.+|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 45563 356777776666666445664 432 2 346889999999999999999999999999999999998
Q ss_pred HhhhcccCceEEeEEEEec-cccccccCCChH
Q 008685 79 LDCRKEYAQIVIPVFYRVD-PSDVRNQTGSFG 109 (557)
Q Consensus 79 ~~~~~~~~~~v~Pv~~~v~-p~~vr~~~g~~~ 109 (557)
+. +.+.+||-|..+-+ .+++.+..|++.
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred HH---hcCCcEEEEECCccccchhhhccccch
Confidence 72 23445666643311 234554445543
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.47 E-value=0.0075 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+.|+|.|++|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.42 E-value=0.0064 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998753
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.41 E-value=0.011 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998765
No 139
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.41 E-value=0.026 Score=55.87 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|..+|. .+-....++.|.|++|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34555564 33335678999999999999999999987765555667765
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.40 E-value=0.0081 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..|.|.|++|+||||+++.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998754
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.38 E-value=0.13 Score=49.40 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=27.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~ 232 (557)
...+++|+|++|+||||++..++..+.. .-..+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4569999999999999999999988764 33234444
No 142
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.38 E-value=0.014 Score=56.15 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|.|.|++|+||||+|+.++...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998864
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.37 E-value=0.0064 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|.|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.36 E-value=0.0066 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 145
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.36 E-value=0.015 Score=50.90 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999887654
No 146
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.36 E-value=0.0092 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+++|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 147
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.017 Score=52.41 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
...|+|.|++|+||||+|+.++..+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35899999999999999999999876543
No 148
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.29 E-value=0.0096 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.27 E-value=0.011 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=22.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 150
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.25 E-value=0.012 Score=57.86 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=31.3
Q ss_pred chhHHHHHHhhcc--cCCCcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 181 ESRVEEIESLLGV--EWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 181 ~~~l~~l~~~L~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
+...+.+.+.+.. ..+....|.|+|++|+||||+++.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444444444432 223456789999999999999999998765444
No 151
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.23 E-value=0.04 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=19.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.++.|+|.+|.|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999876544
No 152
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.23 E-value=0.0065 Score=60.11 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=25.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
..+.++|+|++|+|||||++.+++.+....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 356899999999999999999998775543
No 153
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.23 E-value=0.0074 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=18.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988653
No 154
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.23 E-value=0.011 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|.|++|+||||+|+.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999875
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.22 E-value=0.012 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999764
No 156
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.22 E-value=0.012 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999986
No 157
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.22 E-value=0.016 Score=52.84 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987544
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.21 E-value=0.012 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.20 E-value=0.0091 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|.|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 160
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.03 Score=55.45 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|..+|. .+-...+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34555554 33334678999999999999999999988765555677776
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.16 E-value=0.011 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+++|.|++|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998754
No 162
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.011 Score=55.57 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999998754
No 163
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.13 E-value=0.009 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+|+|.|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988753
No 164
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.13 E-value=0.0083 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998753
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.12 E-value=0.025 Score=52.04 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|...|..+-....+++|.|++|+|||||++.++....
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444433333467999999999999999999987543
No 166
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.12 E-value=0.022 Score=53.02 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=32.9
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS------DFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 233 (557)
.|..+|..+-....++.|.|++|+|||||+..++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344555433334569999999999999999999986322 124566665
No 167
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.10 E-value=0.069 Score=56.61 Aligned_cols=33 Identities=24% Similarity=0.061 Sum_probs=26.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC 230 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 230 (557)
.+++.|+|++|+||||++..+...+...-..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 368899999999999999999987765443333
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.10 E-value=0.071 Score=54.06 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=28.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+|.++|++|+||||++..++..+...-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998876654344443
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998753
No 170
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.08 E-value=0.093 Score=52.31 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|....+.++...+..-......+.|+|.+|.||+++|+.+......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r 178 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR 178 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc
Confidence 56889888888777766442223335779999999999999988876443
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.08 E-value=0.0096 Score=53.18 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=24.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 172
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.06 E-value=0.012 Score=53.07 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|+|.|+.|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.05 E-value=0.014 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.04 E-value=0.012 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.01 E-value=0.015 Score=53.15 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 176
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.01 E-value=0.012 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998764
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.00 E-value=0.01 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 178
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.00 E-value=0.064 Score=55.29 Aligned_cols=29 Identities=38% Similarity=0.397 Sum_probs=24.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
+.+.|.|.+|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999988765544
No 179
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.99 E-value=0.014 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|+|.|++|+||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.98 E-value=0.014 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.96 E-value=0.016 Score=52.79 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988754
No 182
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.94 E-value=0.015 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....+|+|.|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.89 E-value=0.045 Score=54.36 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceE
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC 230 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 230 (557)
...+...+.....+..+|+|+|.+|+|||||+..++..+...-..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 33444444433356789999999999999999999987655433333
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.88 E-value=0.015 Score=52.92 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...|+|.|+.|+||||+++.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999886543
No 185
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.88 E-value=0.032 Score=53.74 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=27.8
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhcc--CCceEEEE
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSD--FEGSCFLQ 233 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 233 (557)
++.|.|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999999887655 34566665
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.88 E-value=0.015 Score=50.69 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.88 E-value=0.015 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEeccCCCchhHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 188
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.87 E-value=0.014 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 189
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.87 E-value=0.037 Score=54.16 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
....+++|+|+.|+||||++..++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999876554
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.86 E-value=0.052 Score=54.18 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceE-EEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSC-FLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSR 275 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 275 (557)
...+++|+|+.|+|||||++.+...+.......+ ++....+... .... .+..+..-......-...+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~-----~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK-----SIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSS-----SEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCc-----eEEEeeecCCCHHHHHHHHHHHhhh
Confidence 4568999999999999999999987654423333 3221100000 0000 0000000000000114566677777
Q ss_pred CceEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 276 RKVLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 276 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
.+-+|++|.+.+.+.+...+... ..|..|+.|+....
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 78899999998777665544332 23555777776554
No 191
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.85 E-value=0.024 Score=55.24 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=34.4
Q ss_pred ccccchhHHHHHHhhccc--CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 177 LVGVESRVEEIESLLGVE--WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
++|-...+..+...+... .....+|+|.|+.|+|||||++.+...+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455555666655444332 344679999999999999999998877653
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.84 E-value=0.017 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....+|+|.|++|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998875
No 193
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.83 E-value=0.015 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+|+|.|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.82 E-value=0.029 Score=49.51 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....|+|.|+.|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987643
No 195
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.82 E-value=0.023 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+|.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999998753
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.80 E-value=0.11 Score=52.75 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=29.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.+.+|.++|.+|+||||++..++..+..+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999998877654444443
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.79 E-value=0.016 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997653
No 198
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.75 E-value=0.017 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.4
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998743
No 199
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.72 E-value=0.018 Score=58.56 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCccccchhHHHHHHhhccc------------CCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 175 NQLVGVESRVEEIESLLGVE------------WEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~------------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
..++|-+...+.|...+... ....+-+.++|++|+|||++|+.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 56788887777776554210 012456899999999999999999988643
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.68 E-value=0.028 Score=52.87 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=30.6
Q ss_pred hHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
-..-+..++.........+.|+|++|+|||.+|..+++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445777776543345679999999999999999999863
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.67 E-value=0.016 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 202
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.63 E-value=0.072 Score=52.21 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHH
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKL 256 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 256 (557)
+..|...+. +-....++.|.|.+|+||||||..++......-..+.|++ . ..+...+...++...
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------l-Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------L-EMSAEQLALRALSDL 97 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------S-SSCHHHHHHHHHHHH
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------C-CCCHHHHHHHHHHHh
Confidence 334444442 3344579999999999999999999988765444555554 1 344556655555443
No 203
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.62 E-value=0.017 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.61 E-value=0.016 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.435 Sum_probs=19.4
Q ss_pred CcEEEEEeccCCCchhHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAI 218 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~ 218 (557)
...+++|.|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999963
No 205
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.60 E-value=0.019 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.59 E-value=0.05 Score=53.05 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=28.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998876553334443
No 207
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.59 E-value=0.018 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+++|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999775
No 208
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.57 E-value=0.058 Score=48.89 Aligned_cols=111 Identities=12% Similarity=0.021 Sum_probs=55.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRR 276 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k 276 (557)
...+..++|.-|.||||.+...+.+....-..++.+..... . ..+...+...+...+ ......+...+.+.+.++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~-R~ge~~i~s~~g~~~--~a~~~~~~~~~~~~~~~~ 101 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--N-RYSEEDVVSHNGLKV--KAVPVSASKDIFKHITEE 101 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------C--CEEECSSGGGGGGGCCSS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--C-cchHHHHHhhcCCee--EEeecCCHHHHHHHHhcC
Confidence 45788999999999999999999887655444444431111 0 111122222221110 000001122222233333
Q ss_pred ceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCChh
Q 008685 277 KVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDKQ 315 (557)
Q Consensus 277 ~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~~ 315 (557)
--+|++|.+. +.++++.+. .+. ..+..||+|.++.+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~-~l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQ-VLA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHH-HHH--HTTCEEEEEECSBC
T ss_pred CCEEEEECcccCCHHHHHHHH-HHh--hCCCEEEEEecccc
Confidence 3499999983 344453332 221 23778999999654
No 209
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.56 E-value=0.083 Score=55.48 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 187 IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 187 l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
+...|..+-....+++|.|++|+|||||+..++......-..++++
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4445543323456899999999999999999998765442233444
No 210
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.55 E-value=0.018 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999864
No 211
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.53 E-value=0.034 Score=54.13 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++.++|+|+|=||+||||.+..++.-+...-..+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999999999999999988776555555554
No 212
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.53 E-value=0.017 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=22.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...|.|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 213
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.52 E-value=0.033 Score=53.92 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=28.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...+++|+|++|+|||||+..++...... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999877654 3344443
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.52 E-value=0.021 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 215
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.51 E-value=0.02 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998863
No 216
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.50 E-value=0.075 Score=54.10 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=24.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..+.++|.|.+|+|||+|+..+++.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 35678999999999999999999986543
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.50 E-value=0.014 Score=57.30 Aligned_cols=105 Identities=18% Similarity=0.094 Sum_probs=57.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
...++|+|+.|.|||||++.+...+.. ....+.+....+... .. ... . . .+... ........+...+..++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~~-~~~---~-i-~~~~g-gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-KH-HKN---Y-T-QLFFG-GNITSADCLKSCLRMRP 241 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-SS-CSS---E-E-EEECB-TTBCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-cc-chh---E-E-EEEeC-CChhHHHHHHHHhhhCC
Confidence 347999999999999999999876543 345555553322111 00 000 0 0 00000 11112556667778888
Q ss_pred eEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 278 VLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 278 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
=++++|...+.+.++.+ ..+. ..+.-+|+|+...
T Consensus 242 ~ilildE~~~~e~~~~l-~~~~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFY-NVLC--SGHKGTLTTLHAG 275 (330)
T ss_dssp SEEEECCCCSTHHHHHH-HHHH--TTCCCEEEEEECS
T ss_pred CEEEEcCCChHHHHHHH-HHHh--cCCCEEEEEEccc
Confidence 89999999775544433 3322 1122356666544
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.46 E-value=0.023 Score=53.11 Aligned_cols=37 Identities=30% Similarity=0.216 Sum_probs=26.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh-ccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS-SDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 233 (557)
...+++|.|++|+|||||++.++.... ..-...+++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457899999999999999999985432 2333444443
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.45 E-value=0.067 Score=53.14 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 184 VEEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 184 l~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...|..+|. .+-....++.|.|.+|+||||||.+++......-..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555664 23234568999999999999999999988765555677776
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.45 E-value=0.014 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhc
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.44 E-value=0.059 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..++++.|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999988765544444443
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.41 E-value=0.021 Score=51.79 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEEeccCCCchhHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.40 E-value=0.016 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+.++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987653
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.38 E-value=0.027 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+|.|.|+.|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998765
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.35 E-value=0.022 Score=52.02 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 226
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.33 E-value=0.022 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=22.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999875
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.32 E-value=0.027 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 228
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.30 E-value=0.12 Score=46.50 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=27.6
Q ss_pred EEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|+|-|.-|+||||.++.+++.+..+...+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999999877655555543
No 229
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.29 E-value=0.19 Score=45.75 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999988654
No 230
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.28 E-value=0.024 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|.|+.|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999875
No 231
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.18 E-value=0.04 Score=51.39 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=30.0
Q ss_pred hhcccCCCcEEEEEeccCCCchhHHHHHHHHHh-hccCCceEEEE
Q 008685 190 LLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI-SSDFEGSCFLQ 233 (557)
Q Consensus 190 ~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~ 233 (557)
+|..+-....++.|.|.+|+|||+||.+++... ......++++.
T Consensus 22 ~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 443332345789999999999999999987664 33334455543
No 232
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.18 E-value=0.021 Score=55.01 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=20.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+..+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998654
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.14 E-value=0.024 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998765
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.11 E-value=0.055 Score=49.42 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=32.6
Q ss_pred ccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 179 GVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+.++..+.+...+.. ...+.++|.|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334455555555432 356789999999999999999999876544
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.09 E-value=0.031 Score=48.39 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999876
No 236
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.09 E-value=0.032 Score=54.20 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....+++|.|+.|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999887653
No 237
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.08 E-value=0.054 Score=49.66 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=30.7
Q ss_pred chhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 181 ESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 181 ~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++..+.+...+.. .....|+|.|.+|+|||||+..+.......
T Consensus 23 ~~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 23 KRLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3344455555432 356789999999999999999999875443
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.07 E-value=0.047 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|+|+.|+||||+++.++..+... ...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45799999999999999999999876543 333443
No 239
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.03 E-value=0.04 Score=58.96 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 56899999988888877643 478999999999999999999876544
No 240
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.03 E-value=0.045 Score=56.78 Aligned_cols=49 Identities=4% Similarity=0.013 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 176 QLVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 176 ~~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....|.+..+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455655566666655322234578999999999999999999999864
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.03 E-value=0.045 Score=50.04 Aligned_cols=34 Identities=12% Similarity=-0.127 Sum_probs=26.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
-.|.+.|.||+||||+|..++.....+-..+.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 3478999999999999999998876654334443
No 242
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.03 E-value=0.03 Score=53.65 Aligned_cols=24 Identities=38% Similarity=0.764 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.01 E-value=0.023 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998763
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.00 E-value=0.026 Score=51.78 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+++|.|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999988754
No 245
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.98 E-value=0.031 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=21.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998753
No 246
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.98 E-value=0.11 Score=53.22 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 232 (557)
+.+.++|.|.+|+|||+|+.++++.+... -+.+++.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 35678999999999999999999986543 3444443
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.97 E-value=0.03 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.97 E-value=0.033 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.96 E-value=0.023 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=22.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 250
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.93 E-value=0.029 Score=51.86 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=22.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|+|.|++|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.91 E-value=0.032 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 252
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.91 E-value=0.031 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...|.|.|++|+||||+|+.+++.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.89 E-value=0.087 Score=53.64 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=29.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 232 (557)
..++|.++|.+|+||||++..++..+... -..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999999999999999988765 3344444
No 254
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.88 E-value=0.033 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.81 E-value=0.033 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.++|+|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999999864
No 256
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.80 E-value=0.054 Score=52.18 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=28.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCC-ceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFE-GSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 233 (557)
...+++|.|++|+|||||+..++..+..... .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4568999999999999999999988765433 444543
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.78 E-value=0.029 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998763
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.78 E-value=0.059 Score=47.41 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.++++|.|..|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5689999999999999999999876543
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.77 E-value=0.035 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+|.|+|+.|+||||||..++..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999874
No 260
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.75 E-value=0.024 Score=55.28 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|+|.|+.|+|||||+..++.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999864
No 261
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.73 E-value=0.076 Score=63.51 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=36.2
Q ss_pred HHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 186 EIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.|..+|. .+-...+.+.|+|++|+|||+||.+++......-..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3555554 23345678999999999999999999998776655667765
No 262
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.72 E-value=0.43 Score=45.43 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhceEEEEecCCccCchhhHHHHHHHH
Q 008685 43 ISESLMNAIEASAISLIIFSEGYASSRWCLDELLKIL 79 (557)
Q Consensus 43 ~~~~~~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~ 79 (557)
...++.+.++++++.|.|+.-.--.+..|. ++...+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH
Confidence 457888999999999999987655555552 455443
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.72 E-value=0.042 Score=52.79 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|+|.|+.|+||||||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.62 E-value=0.026 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=16.5
Q ss_pred cEEEEEeccCCCchhHHHHHHH-HHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIF-EKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~-~~~ 222 (557)
..+++|.|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.60 E-value=0.076 Score=51.53 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....+|+|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.56 E-value=0.064 Score=53.06 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...+++|+|+.|+||||++..++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 46799999999999999999999886543
No 267
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.56 E-value=0.21 Score=51.07 Aligned_cols=64 Identities=19% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEEeccccccCCCChHHHHHHHHHH
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQNVREESVRPGGLACLQLKLLSK 255 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 255 (557)
+..|..++ .+-....++.|.|.+|+|||+||..++..+... -..++|+. . ..+...+...++..
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l------E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L------EMPAAQLTLRMMCS 251 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S------SSCHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C------CCCHHHHHHHHHHH
Confidence 34455555 333456799999999999999999999887643 33455654 1 23445555555443
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.55 E-value=0.046 Score=54.07 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=28.0
Q ss_pred HHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 187 IESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 187 l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
|..+|..+-....++.|+|++|+|||||+..++...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444333456899999999999999999999876
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.47 E-value=0.079 Score=48.60 Aligned_cols=36 Identities=14% Similarity=-0.141 Sum_probs=28.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...++.|+|+.|+||||++..++++...+...+..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 457899999999999999999999876654444444
No 270
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.43 E-value=0.075 Score=54.38 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=34.0
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..|..++. +-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 185 ~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 185 TELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp HHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 34444442 3345678999999999999999999988765534455553
No 271
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.43 E-value=0.043 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.+|.|.|++|+||||+|+.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 272
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.40 E-value=0.056 Score=53.92 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=23.6
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999754
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.36 E-value=0.04 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHHhh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998764
No 274
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.031 Score=49.07 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
++++|+|..|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999876543
No 275
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.30 E-value=0.24 Score=44.73 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=25.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCC
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFE 227 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 227 (557)
+-|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999999865544
No 276
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.25 E-value=0.088 Score=49.50 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=27.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...++.+.|.||+||||++..++..+. .-..+..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 357889999999999999999998876 43333333
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.23 E-value=0.077 Score=54.51 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=27.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|+|+.|+|||||++.++..+... ...+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 46799999999999999999999877543 344444
No 278
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.22 E-value=0.081 Score=51.21 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...++|+|+|-||+||||+|..++..+...-..+..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999998876644455554
No 279
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.22 E-value=0.06 Score=49.77 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=25.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.20 E-value=0.086 Score=53.02 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..|..+|..+-....++.|.|++|+|||||+..++-.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3455555433344679999999999999999988754
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.16 E-value=0.08 Score=50.50 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...++.|.|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999976543
No 282
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.11 E-value=0.088 Score=50.68 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=27.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999998876543333433
No 283
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.10 E-value=0.09 Score=51.32 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.2
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.|..+|..+-....++.|+|++|+|||+||.+++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445554333456799999999999999999999764
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.04 E-value=0.046 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.110 Sum_probs=21.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..+++|.|+.|+|||||++.++-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998865
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.04 E-value=0.14 Score=53.16 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=27.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
..++|+|+|.+|+||||++..++..+...-..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467899999999999999999998876553334444
No 286
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.99 E-value=0.12 Score=53.17 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 186 EIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 186 ~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
.|...+ .+-....++.|.|.+|+|||||+..++..+... -..++|+.
T Consensus 192 ~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 192 ELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344444 233445799999999999999999999887643 33556654
No 287
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.97 E-value=0.074 Score=55.89 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=32.4
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.+.+....+.+............+++|.|+.|+|||||++.++..+..
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 334444444444433211124578999999999999999999998764
No 288
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.97 E-value=0.098 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999998876544455554
No 289
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.97 E-value=0.043 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999988754
No 290
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.92 E-value=0.15 Score=50.27 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
.+..+++|.|.+|+|||||+..++......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999999999998776543
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.90 E-value=0.062 Score=49.85 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 292
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.88 E-value=0.058 Score=59.69 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhccc-----------CCCcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 175 NQLVGVESRVEEIESLLGVE-----------WEDVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..++|.+...+.|.+.+... -.....+.++|++|+|||+||+.++......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56789998888888776421 1234568899999999999999999987543
No 293
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.84 E-value=0.042 Score=55.82 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998754
No 294
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.82 E-value=0.053 Score=50.50 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.. .+++|.|+.|+|||||.+.++--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999988653
No 295
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.80 E-value=0.38 Score=44.45 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 232 (557)
...|.|.|+.|+||||+++.++..+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999987654 4424443
No 296
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.79 E-value=0.11 Score=52.68 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.+.++|.|.+|+|||+|+.++++....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 345789999999999999999987554
No 297
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.77 E-value=0.067 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 298
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.74 E-value=0.11 Score=49.89 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=28.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.++|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999988776544444444
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.67 E-value=0.058 Score=54.93 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
.++|+|+|.+|+||||++..++..+...-..+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999999999998876543333443
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.65 E-value=0.048 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988754
No 301
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.65 E-value=0.051 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988654
No 302
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.63 E-value=0.18 Score=49.57 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=24.9
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....+++|.|++|+|||||...+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999876544
No 303
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.59 E-value=0.072 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998763
No 304
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.54 E-value=0.45 Score=43.21 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
..|.|.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 305
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.45 E-value=0.055 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 306
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.42 E-value=0.063 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998754
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.37 E-value=0.069 Score=51.53 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999998876
No 308
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.36 E-value=0.17 Score=53.20 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred ccccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 177 LVGVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
.+.|.+..+.+.+..........+|.+.|++|+||||+|+.+...+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 444454555555555322234578999999999999999999987654
No 309
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.35 E-value=0.084 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.+-+.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999999985
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.31 E-value=0.072 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.-.++|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 311
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.31 E-value=0.07 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 312
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.27 E-value=0.13 Score=53.86 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=25.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
...+|.++|++|.||||+|+.++..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 456899999999999999999998865444
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.25 E-value=0.061 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4568999999999999999998764
No 314
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.20 E-value=0.51 Score=42.89 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...|.|.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 315
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.12 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.16 E-value=0.072 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||.+.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 317
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.10 E-value=0.31 Score=50.71 Aligned_cols=38 Identities=5% Similarity=-0.105 Sum_probs=30.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
....++.|.|.+|+|||+||.+++...... -..++|+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 346789999999999999999999987665 34566654
No 318
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.09 E-value=0.09 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
+.|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 319
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.08 E-value=0.14 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...+|.|.|++|+||||+|+.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999998653
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.07 E-value=0.062 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||++.++--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988754
No 321
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.07 E-value=0.066 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.05 E-value=0.066 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999987643
No 323
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.98 E-value=0.065 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||++.++.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3568999999999999999998754
No 324
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.95 E-value=0.067 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|.|||||.+.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988654
No 325
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.94 E-value=0.066 Score=49.87 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998754
No 326
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.92 E-value=0.056 Score=49.32 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||.+.++--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998764
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.91 E-value=0.079 Score=47.48 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.-.|+|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 328
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.87 E-value=0.071 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 329
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.87 E-value=0.16 Score=51.33 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=28.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
...+++|+|++|+||||++..++..+...-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999998877653333433
No 330
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.87 E-value=0.096 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.86 E-value=0.068 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998754
No 332
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.83 E-value=0.07 Score=49.94 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 333
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.82 E-value=0.092 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=23.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999864
No 334
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.80 E-value=0.18 Score=46.70 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=28.0
Q ss_pred CcEEEEEec-cCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 008685 197 DVYTLGIWG-IGGIGKTTIAKAIFEKISSD-FEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G-~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 233 (557)
..++|+|++ -||+||||+|..++..+... -..+..+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 456777775 58999999999999998776 44455554
No 335
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.75 E-value=0.074 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999998754
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.67 E-value=0.069 Score=47.17 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~ 220 (557)
-|+|.|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 337
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.61 E-value=0.29 Score=50.12 Aligned_cols=26 Identities=35% Similarity=0.190 Sum_probs=20.3
Q ss_pred CcEEEEEeccCCCchhHHHH-HHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAK-AIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~-~~~~~~ 222 (557)
..+.++|.|.+|+|||+||. .+++..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 34578999999999999965 566554
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.60 E-value=0.26 Score=49.86 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCcccc
Q 008685 185 EEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVIL 264 (557)
Q Consensus 185 ~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 264 (557)
..|...+. ....+++|.|+.|+|||||.+.+...+...-..+++....-+... .... +..-......
T Consensus 157 ~~L~~l~~---~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~--~~~~--------q~~v~~~~g~ 223 (418)
T 1p9r_A 157 DNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DGIG--------QTQVNPRVDM 223 (418)
T ss_dssp HHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SSSE--------EEECBGGGTB
T ss_pred HHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc--CCcc--------eEEEccccCc
Confidence 34445442 345689999999999999999999877544223333321111000 0000 0000000001
Q ss_pred C-HHHHHHHHccCceEEEEcCCCCHHHHH
Q 008685 265 N-IALSFRRLSRRKVLIVFDDVSCFNQIE 292 (557)
Q Consensus 265 ~-~~~l~~~l~~k~~LlVlDdv~~~~~~~ 292 (557)
. ...++..++..+-++++.++.+.....
T Consensus 224 ~f~~~lr~~Lrq~pd~i~vgEiRd~et~~ 252 (418)
T 1p9r_A 224 TFARGLRAILRQDPDVVMVGEIRDLETAQ 252 (418)
T ss_dssp CHHHHHHHHGGGCCSEEEESCCCSHHHHH
T ss_pred CHHHHHHHHhccCCCeEEEcCcCCHHHHH
Confidence 1 455667777778888899987765443
No 339
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.58 E-value=0.28 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=19.5
Q ss_pred CcEEEEEeccCCCchhHHHH-HHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAK-AIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~-~~~~~ 221 (557)
+.+.++|.|.+|+|||+|+. .+++.
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh
Confidence 34578999999999999974 55553
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.49 E-value=0.079 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...+++|.|+.|.|||||.+.++--..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345899999999999999999876543
No 341
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.48 E-value=0.29 Score=50.13 Aligned_cols=26 Identities=31% Similarity=0.166 Sum_probs=20.4
Q ss_pred CcEEEEEeccCCCchhHHHH-HHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAK-AIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~-~~~~~~ 222 (557)
..+.++|.|.+|+|||+||. .+++..
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 34578999999999999965 666654
No 342
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.45 E-value=0.082 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988653
No 343
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.40 E-value=0.19 Score=45.16 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=26.8
Q ss_pred EEEEEe-ccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 199 YTLGIW-GIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 199 ~~i~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 67899999999999998876544555554
No 344
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.37 E-value=0.1 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.36 E-value=0.096 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.....++|.|+.|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999999874
No 346
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.35 E-value=0.12 Score=47.51 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 347
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.34 E-value=0.35 Score=53.97 Aligned_cols=23 Identities=22% Similarity=-0.054 Sum_probs=20.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~ 219 (557)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999884
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.32 E-value=0.078 Score=48.97 Aligned_cols=26 Identities=31% Similarity=0.219 Sum_probs=22.6
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....+|+|.|+.|+|||||++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34679999999999999999988765
No 349
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.31 E-value=0.13 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999875
No 350
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.30 E-value=0.16 Score=47.16 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=26.4
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999999877654455554
No 351
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.28 E-value=0.16 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.....|+|.|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988754
No 352
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.26 E-value=0.085 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998764
No 353
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.22 E-value=0.15 Score=46.72 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=25.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998765
No 354
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.21 E-value=0.28 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcEEEEEeccCCCchhHHHH-HHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAK-AIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~-~~~~~~ 222 (557)
..+.++|.|.+|+|||+||. .+++..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 34678999999999999965 666544
No 355
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.20 E-value=0.29 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+.++|.|.+|+|||+|+.++++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 45678999999999999999988754
No 356
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.18 E-value=0.052 Score=57.83 Aligned_cols=48 Identities=17% Similarity=0.010 Sum_probs=34.4
Q ss_pred CCccccchhHHHHHHhhcccCC---------CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 175 NQLVGVESRVEEIESLLGVEWE---------DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 175 ~~~vGR~~~l~~l~~~L~~~~~---------~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.++|.+...+.+...+..+.. +..-+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 6688998876666555543310 01158899999999999999998764
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.14 E-value=0.11 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+.+|+|+.|.|||||+.+++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999988754
No 358
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.13 E-value=0.098 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHHh
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.+|+|.|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998864
No 359
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.11 E-value=0.2 Score=48.91 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=28.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..++...|-||+||||+|..++..+...-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 567788899999999999999998877644455554
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.03 E-value=0.11 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4568999999999999999999864
No 361
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.02 E-value=0.22 Score=49.09 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
+..+|+|+|.+|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 46799999999999999999999765443
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.00 E-value=0.13 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 363
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.97 E-value=0.11 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEeccCCCchhHHHHHHHHHh
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 364
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.97 E-value=0.2 Score=51.66 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=25.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccC
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDF 226 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 226 (557)
...+|.++|++|+||||+++.++......|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 346889999999999999999998865444
No 365
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.85 E-value=0.12 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..++++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998753
No 366
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.79 E-value=0.31 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.79 E-value=0.15 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999988753
No 368
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.77 E-value=0.11 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
...+++|.|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999988653
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.76 E-value=0.12 Score=47.43 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhcc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSD 225 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 225 (557)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.75 E-value=0.12 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999865
No 371
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.75 E-value=0.3 Score=48.19 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
....++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44667788899999999999999988776644444443
No 372
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.75 E-value=0.087 Score=50.88 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|+|+.|.|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4568999999999999999988754
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.72 E-value=0.13 Score=44.08 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998865
No 374
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.69 E-value=0.25 Score=48.67 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHhh--ccCCceEEEE
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKIS--SDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 233 (557)
...+++.+.|-||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3467999999999999999999998887 5544455544
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.64 E-value=0.14 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEeccCCCchhHHHHHHHHH
Q 008685 201 LGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~ 221 (557)
|+|.|.+|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999865
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.63 E-value=0.13 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998865
No 377
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.62 E-value=0.068 Score=50.48 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+...|+|.|..|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999888765
No 378
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.61 E-value=0.18 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
+++|.+.+. ..+++|.|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666553 3588999999999999999998 53
No 379
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.61 E-value=0.16 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 380
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.58 E-value=0.32 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
.+.++|.|.+|+|||+|+..+++...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678899999999999999998754
No 381
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.58 E-value=0.11 Score=49.09 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+++|.|+.|+|||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988654
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.56 E-value=0.13 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999875
No 383
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.55 E-value=0.13 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 384
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.54 E-value=0.36 Score=45.70 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=35.1
Q ss_pred hHHHHHHhhcc--cCCCcEEEEEecc-CCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 183 RVEEIESLLGV--EWEDVYTLGIWGI-GGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 183 ~l~~l~~~L~~--~~~~~~~i~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.+..|...|.. ...+.++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44445444432 2245678999875 899999999999998876555566654
No 385
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.54 E-value=0.36 Score=46.41 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCcEEEEEecc-CCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWGI-GGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.+.++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999986 899999999999998876655555554
No 386
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.47 E-value=0.18 Score=53.64 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
...+|.|.|++|+||||+|+.+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998743
No 387
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.46 E-value=0.14 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.46 E-value=0.15 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.44 E-value=0.14 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4568999999999999999999864
No 390
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.43 E-value=0.14 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4568999999999999999999864
No 391
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.42 E-value=0.13 Score=44.29 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEeccCCCchhHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~ 219 (557)
-|+|.|.+|+|||||...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999886
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.42 E-value=0.14 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|.|||||.+.+.--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4568999999999999999988754
No 393
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.39 E-value=0.28 Score=47.98 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678889999999999999999998877655555554
No 394
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.39 E-value=0.14 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988765
No 395
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.39 E-value=0.19 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999865
No 396
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.39 E-value=0.14 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 397
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.39 E-value=0.14 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4568999999999999999999864
No 398
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.38 E-value=0.26 Score=49.19 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCcEEEEEec-cCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 196 EDVYTLGIWG-IGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 196 ~~~~~i~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.+.++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4567888875 8999999999999988776544455554
No 399
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.37 E-value=0.2 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999875
No 400
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.37 E-value=0.13 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 401
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.33 E-value=0.2 Score=48.14 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred hHHHHHHhhcccCCCcEEEEEec---cCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 183 RVEEIESLLGVEWEDVYTLGIWG---IGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 183 ~l~~l~~~L~~~~~~~~~i~I~G---~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.+.++.+.+.. ..++|+|++ -||+||||+|..++..+...-..+..+.
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34455555542 234666665 8999999999999988765544444443
No 402
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.29 E-value=0.13 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~ 220 (557)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998863
No 403
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.25 E-value=0.15 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999999854
No 404
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.21 E-value=0.15 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999864
No 405
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.20 E-value=0.42 Score=48.99 Aligned_cols=27 Identities=30% Similarity=0.169 Sum_probs=21.0
Q ss_pred CcEEEEEeccCCCchhHHHH-HHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAK-AIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~-~~~~~~~ 223 (557)
..+.++|.|.+|+|||+||. .+++...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 34578999999999999954 6666554
No 406
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.19 E-value=0.99 Score=56.04 Aligned_cols=150 Identities=10% Similarity=-0.030 Sum_probs=0.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcC--------CccccCHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQD--------NNVILNIALSF 270 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~~~~~~l~ 270 (557)
+-+.++|++|+|||++|+.+...... .....+. .+. ......++..+-..+... ....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa-~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------- 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSK-DTTTEHILSALHRHTNYVTTSKGLTLLPKS------- 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCT-TCCHHHHHHHHHHHBCCEEETTTEEEEEBS-------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eec-CCCHHHHHHHHHHHhhhccccCCccccCCC-------
Q ss_pred HHHccCceEEEEcCC-------CCHHHHHHHhccCCCCCC-------------ceEEEEEeCChh-------hhhccccc
Q 008685 271 RRLSRRKVLIVFDDV-------SCFNQIESLIGSLDWFTP-------------RSTIIITTRDKQ-------VLRNWGVK 323 (557)
Q Consensus 271 ~~l~~k~~LlVlDdv-------~~~~~~~~l~~~l~~~~~-------------~~~IiiTsR~~~-------~~~~~~~~ 323 (557)
.+++.++.+||+ +.......++..+...+. +..+|.++-... -.......
T Consensus 1334 ---~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1334 ---DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp ---SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred ---CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Q ss_pred eEEEcccCCHHHHHHHHHhccccCCCCCCChHHHHHHHHHHc
Q 008685 324 KIYEMEALEYDHALELFSRHAFKQIHPAVGYEELSSKVMEYA 365 (557)
Q Consensus 324 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 365 (557)
..+.++..+.++-.++|...........+.....+..|++.+
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 407
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.17 E-value=0.14 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999854
No 408
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.15 E-value=2.5 Score=38.82 Aligned_cols=39 Identities=23% Similarity=0.104 Sum_probs=27.4
Q ss_pred ccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 179 GVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
=|+-..+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344455555555532 1 27889999999999999888764
No 409
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.15 E-value=0.16 Score=44.15 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=21.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 410
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.14 E-value=0.14 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.767 Sum_probs=20.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.14 E-value=0.15 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.308 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999854
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.10 E-value=0.13 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999875
No 413
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.09 E-value=0.24 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHHh
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
....+|+|+|++|+||+++|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999887754
No 414
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.08 E-value=0.13 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.158 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4568999999999999999999864
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.07 E-value=0.17 Score=44.79 Aligned_cols=25 Identities=12% Similarity=0.422 Sum_probs=21.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
+...|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 416
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.06 E-value=0.16 Score=43.70 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 417
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.05 E-value=0.15 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999998865
No 418
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.02 E-value=0.16 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
...++|+|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988653
No 419
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.99 E-value=0.13 Score=45.21 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=22.8
Q ss_pred EEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 201 LGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 201 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.|+|.+|+|||++|.+++.. ...++++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 689999999999999999865 23455554
No 420
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.98 E-value=0.16 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 421
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.90 E-value=0.2 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557899999999999999998865
No 422
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.85 E-value=0.16 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 423
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.84 E-value=0.19 Score=45.19 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=20.8
Q ss_pred ccchhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 179 GVESRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 179 GR~~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
|++...+.+.+.... ...-.|+|.|.+|+|||||...+...
T Consensus 13 ~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344444444444332 23456889999999999999988864
No 424
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.78 E-value=0.17 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEeccCCCchhHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
--|+|.|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 425
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.77 E-value=0.27 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 426
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.74 E-value=0.15 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998754
No 427
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.68 E-value=0.27 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.1
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.....|++.|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999864
No 428
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.67 E-value=0.2 Score=44.25 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998865
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.64 E-value=0.16 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3468999999999999999999864
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.64 E-value=0.17 Score=44.24 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=21.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999865
No 431
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.63 E-value=0.16 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 432
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.60 E-value=0.17 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 433
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.57 E-value=0.23 Score=42.73 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.57 E-value=0.12 Score=51.03 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999854
No 435
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.56 E-value=1.3 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....++|+|+.|.|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4568999999999999999988764
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.55 E-value=0.18 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999865
No 437
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.54 E-value=0.18 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 438
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.53 E-value=0.19 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 196 EDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 196 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
+..--|+|.|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999988753
No 439
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.53 E-value=0.65 Score=42.44 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=54.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccccCHHHHHHHHccCc
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVILNIALSFRRLSRRK 277 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~k~ 277 (557)
..+..++|.-|.||||.+...+++....-..+..+..... . ..+ ..+...+....... .. .....+.+.. ++-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~-Ryg-~~i~sr~G~~~~a~-~i-~~~~di~~~~-~~~ 91 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--T-RYS-SSFCTHDRNTMEAL-PA-CLLRDVAQEA-LGV 91 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--C-CC------------CEEE-EE-SSGGGGHHHH-TTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--c-cch-HHHHhhcCCeeEEE-ec-CCHHHHHHHh-ccC
Confidence 5688999999999999888888776555444444432211 1 223 33332221111000 00 0112223333 223
Q ss_pred eEEEEcCCCCHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 278 VLIVFDDVSCFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 278 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
=+|++|.+.-...+..+...+. ..|..||+|.++.
T Consensus 92 dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred CEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 3999999822112444444443 2577899999984
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.53 E-value=0.18 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 441
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.48 E-value=0.47 Score=42.86 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=49.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhc-cCCceEEEEeccccccCCCChHHHHHHHHHHHhcCCccc-c-CHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISS-DFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQDNNVI-L-NIALSFRRL 273 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-~-~~~~l~~~l 273 (557)
...+..|+|+-|.||||.+...+++... .....++-..... ..+ ...+.+..+...... . +...+.+.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~----R~~----~~~I~Sr~G~~~~a~~v~~~~di~~~i 98 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD----RYH----KEKVVSHNGNAIEAINISKASEIMTHD 98 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------------CBTTBCCEEEEESSGGGGGGSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC----cch----hhhHHHhcCCceeeEEeCCHHHHHHHH
Confidence 4578899999999999955555555443 3333333221111 111 112222222111111 0 123333334
Q ss_pred ccCceEEEEcCC--CCHHHHHHHhccCCCCCCceEEEEEeC
Q 008685 274 SRRKVLIVFDDV--SCFNQIESLIGSLDWFTPRSTIIITTR 312 (557)
Q Consensus 274 ~~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~IiiTsR 312 (557)
.++.-.|++|.+ .+.+.++.+... . ..|-.||+..=
T Consensus 99 ~~~~dvV~IDEaQFf~~~~v~~l~~l-a--~~gi~Vi~~GL 136 (219)
T 3e2i_A 99 LTNVDVIGIDEVQFFDDEIVSIVEKL-S--ADGHRVIVAGL 136 (219)
T ss_dssp CTTCSEEEECCGGGSCTHHHHHHHHH-H--HTTCEEEEEEE
T ss_pred hcCCCEEEEechhcCCHHHHHHHHHH-H--HCCCEEEEeec
Confidence 456679999998 333344333221 1 24666776543
No 442
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.45 E-value=0.19 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999999875
No 443
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.44 E-value=0.18 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998875
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.43 E-value=0.18 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998864
No 445
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.40 E-value=0.19 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988864
No 446
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.30 E-value=0.19 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999854
No 447
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.29 E-value=0.14 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIF 219 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~ 219 (557)
..-.|+|.|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 448
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.29 E-value=0.19 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999865
No 449
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.28 E-value=0.16 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
...|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999998864
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.28 E-value=0.19 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...+++|.|+.|+|||||.+.++--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4568999999999999999998853
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.28 E-value=0.19 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999875
No 452
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.26 E-value=0.19 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999864
No 453
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.22 E-value=0.58 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.2
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
...+++|.|+.|.|||||.+.++-
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457999999999999999998864
No 454
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.16 E-value=0.13 Score=46.39 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
....|+|.|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999987764
No 455
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.15 E-value=0.19 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.2
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 456
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.14 E-value=0.17 Score=44.73 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
.--|+|.|.+|+|||||.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999997665543
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.12 E-value=0.2 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446899999999999999998865
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.12 E-value=0.2 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998865
No 459
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.10 E-value=0.58 Score=44.61 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.2
Q ss_pred hhHHHHHHhhcc--cCCCcEEEEEecc-CCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 182 SRVEEIESLLGV--EWEDVYTLGIWGI-GGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 182 ~~l~~l~~~L~~--~~~~~~~i~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
+.+..|...|.. ...+.++|.|+|. ||+||||+|..++..+...-..++.+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344455544432 2234678888775 799999999999998877655566554
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.01 E-value=0.2 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999999875
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.98 E-value=0.2 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998865
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.96 E-value=0.24 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHh
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKI 222 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~ 222 (557)
..+.+|+|+.|.|||||..+++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999887654
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.95 E-value=0.21 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446899999999999999999865
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.94 E-value=0.46 Score=42.27 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=54.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEEeccccccCCCChHHHHHHHHHHHhcC--CccccCHHHHHHHHc
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQNVREESVRPGGLACLQLKLLSKLLQD--NNVILNIALSFRRLS 274 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--~~~~~~~~~l~~~l~ 274 (557)
..++..++|+.|.||||.+...+++...+-..+..+...... ..+.. .+.+.+... .....+...+.+.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~---r~~~~----~i~s~~g~~~~a~~~~~~~~i~~~~~ 79 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN---RYSKE----DVVSHMGEKEQAVAIKNSREILKYFE 79 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------C----EEECTTSCEEECEEESSSTHHHHHCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc---cchHH----HHHhhcCCceeeEeeCCHHHHHHHHh
Confidence 357899999999999999999998875443333333211000 00000 011111000 000001233444444
Q ss_pred cCceEEEEcCCC--CHHHHHHHhccCCCCCCceEEEEEeCCh
Q 008685 275 RRKVLIVFDDVS--CFNQIESLIGSLDWFTPRSTIIITTRDK 314 (557)
Q Consensus 275 ~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~IiiTsR~~ 314 (557)
+.-=+|++|.+. +.+.++.+... . ..+..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l-~--~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKI-A--ESGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHH-H--HTTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH-H--hCCCEEEEEeccc
Confidence 333499999972 33444443321 1 2377899998865
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.92 E-value=0.21 Score=44.72 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...-|+|.|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 466
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.91 E-value=0.21 Score=44.10 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
--|+|.|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 467
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.88 E-value=0.39 Score=43.75 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=25.4
Q ss_pred EEEEEecc-CCCchhHHHHHHHHHhhccCCceEEE
Q 008685 199 YTLGIWGI-GGIGKTTIAKAIFEKISSDFEGSCFL 232 (557)
Q Consensus 199 ~~i~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 232 (557)
++|.|.|. ||+||||++..++..+......+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46777775 89999999999998877654334433
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.78 E-value=0.22 Score=49.07 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhh
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKIS 223 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 223 (557)
....++|.|+.|+|||||.+.++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999998754
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.78 E-value=0.21 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999865
No 470
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.78 E-value=0.22 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 471
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.77 E-value=0.17 Score=50.15 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=26.6
Q ss_pred cEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...++|+|+.|.|||||++.+...+.. ....+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 458999999999999999999876543 23445554
No 472
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.76 E-value=0.26 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999865
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.74 E-value=0.22 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 474
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=88.72 E-value=0.71 Score=46.34 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCcEEEEEe-ccCCCchhHHHHHHHHHhhc
Q 008685 196 EDVYTLGIW-GIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 196 ~~~~~i~I~-G~~GiGKTtLa~~~~~~~~~ 224 (557)
...++|+|+ |-||+||||+|..++..+..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 346777776 77999999999999988763
No 475
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.71 E-value=0.22 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999998864
No 476
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.69 E-value=0.21 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.--|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998873
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.57 E-value=0.22 Score=44.14 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999999864
No 478
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.57 E-value=0.19 Score=48.42 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.5
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 008685 200 TLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 200 ~i~I~G~~GiGKTtLa~~~~~ 220 (557)
-|+|.|++|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 479
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.56 E-value=0.23 Score=43.99 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999875
No 480
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.56 E-value=0.34 Score=57.28 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=38.7
Q ss_pred hhHHHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 182 SRVEEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 182 ~~l~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.-...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 366 TGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 33445666664 33345679999999999999999999988766656677775
No 481
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.55 E-value=0.23 Score=43.81 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 482
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.50 E-value=0.25 Score=43.83 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.6
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4667999999999999999988753
No 483
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.48 E-value=0.32 Score=45.55 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=27.9
Q ss_pred CcEEEEEe-ccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIW-GIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45678887 67899999999999998876544445443
No 484
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.41 E-value=0.23 Score=44.24 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.1
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
...-|+|.|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 485
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.36 E-value=0.49 Score=46.16 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
...++...|-||+||||+|..++..+...-..+..+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567788999999999999999998876644444443
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.30 E-value=0.54 Score=56.42 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=41.2
Q ss_pred ccccchhHHHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 177 LVGVESRVEEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 177 ~vGR~~~l~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..+...-...|..+|. .+-....++.|+|++|+||||||.+++......-..++|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444556666664 33345679999999999999999999998776555667765
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.29 E-value=0.24 Score=43.71 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.-.|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999875
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.26 E-value=0.36 Score=57.02 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred hhHHHHHHhhc-ccCCCcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 182 SRVEEIESLLG-VEWEDVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 182 ~~l~~l~~~L~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
.-...|..+|. .+-....++.|.|++|+||||||.+++......-..+.|+.
T Consensus 715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33445555554 23334679999999999999999999988765544566664
No 489
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.22 E-value=0.23 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 490
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.10 E-value=0.52 Score=50.77 Aligned_cols=39 Identities=28% Similarity=0.170 Sum_probs=26.3
Q ss_pred hhHHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHHhhc
Q 008685 182 SRVEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEKISS 224 (557)
Q Consensus 182 ~~l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 224 (557)
+..+.+...|.. ..+..|+||||.|||+.+.++...+..
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345556666642 237789999999999876666655433
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.10 E-value=0.25 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998864
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.05 E-value=0.29 Score=45.27 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.8
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998864
No 493
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.01 E-value=0.41 Score=50.93 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=29.0
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHHhhccCCceEEEE
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEKISSDFEGSCFLQ 233 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 233 (557)
..+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4578899999999999999999988766544444443
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.00 E-value=0.34 Score=46.68 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHhhcccCCCcEEEEEeccCCCchhHHHHHHHHH
Q 008685 184 VEEIESLLGVEWEDVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 184 l~~l~~~L~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
++++...+. ..+++|.|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 445555553 247899999999999999988754
No 495
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.99 E-value=0.23 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.0
Q ss_pred cEEEEEeccCCCchhHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
.--|+|.|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998864
No 496
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.97 E-value=0.28 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
....|+|.|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 497
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.95 E-value=0.25 Score=43.51 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
..-.|+|.|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998853
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.94 E-value=0.24 Score=43.26 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.4
Q ss_pred CcEEEEEeccCCCchhHHHHHHHH
Q 008685 197 DVYTLGIWGIGGIGKTTIAKAIFE 220 (557)
Q Consensus 197 ~~~~i~I~G~~GiGKTtLa~~~~~ 220 (557)
....|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999988763
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.91 E-value=0.26 Score=43.59 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.1
Q ss_pred cEEEEEeccCCCchhHHHHHHHHH
Q 008685 198 VYTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 198 ~~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.--|+|.|.+|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 500
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.89 E-value=0.26 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEEeccCCCchhHHHHHHHHH
Q 008685 199 YTLGIWGIGGIGKTTIAKAIFEK 221 (557)
Q Consensus 199 ~~i~I~G~~GiGKTtLa~~~~~~ 221 (557)
.-|+|.|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
Done!