Query 008687
Match_columns 557
No_of_seqs 245 out of 936
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 5.4E-27 1.8E-31 205.9 12.3 99 459-557 7-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 3E-26 1E-30 195.5 10.1 83 475-557 7-89 (90)
3 2elj_A Transcriptional adapter 99.9 7.9E-26 2.7E-30 192.2 10.1 82 474-555 5-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.6 5.9E-15 2E-19 115.7 7.4 55 134-188 3-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.4 1.6E-13 5.6E-18 114.1 8.5 56 138-194 16-71 (79)
6 1x41_A Transcriptional adaptor 99.4 5.2E-13 1.8E-17 105.2 7.3 55 136-190 4-58 (60)
7 2e5r_A Dystrobrevin alpha; ZZ 99.3 9E-13 3.1E-17 105.0 5.4 55 77-132 6-61 (63)
8 2fc7_A ZZZ3 protein; structure 99.2 2.5E-11 8.5E-16 101.6 6.5 57 80-137 19-79 (82)
9 1guu_A C-MYB, MYB proto-oncoge 99.0 2.1E-10 7.1E-15 87.5 5.7 46 140-185 3-48 (52)
10 1gvd_A MYB proto-oncogene prot 99.0 2.4E-10 8.2E-15 87.2 5.7 46 140-185 3-48 (52)
11 1w0t_A Telomeric repeat bindin 99.0 5E-10 1.7E-14 85.8 6.1 46 140-185 2-49 (53)
12 2d9a_A B-MYB, MYB-related prot 99.0 6.8E-10 2.3E-14 87.1 6.8 48 138-185 6-53 (60)
13 2dip_A Zinc finger SWIM domain 99.0 3.8E-10 1.3E-14 97.5 5.7 56 82-148 31-87 (98)
14 2yum_A ZZZ3 protein, zinc fing 99.0 5.5E-10 1.9E-14 91.6 6.2 51 138-188 6-61 (75)
15 2dim_A Cell division cycle 5-l 98.9 1.9E-09 6.7E-14 87.2 6.9 48 138-185 7-54 (70)
16 2cu7_A KIAA1915 protein; nucle 98.9 2.3E-09 7.9E-14 87.3 7.0 48 138-186 7-54 (72)
17 3sjm_A Telomeric repeat-bindin 98.9 2E-09 6.8E-14 85.9 6.1 46 140-185 11-58 (64)
18 1ity_A TRF1; helix-turn-helix, 98.9 2.3E-09 8E-14 86.5 6.1 48 139-186 9-58 (69)
19 1tot_A CREB-binding protein; z 98.9 7.9E-10 2.7E-14 84.7 2.5 46 79-132 3-48 (52)
20 2cjj_A Radialis; plant develop 98.8 3.6E-09 1.2E-13 90.4 4.6 59 140-198 8-74 (93)
21 2cqr_A RSGI RUH-043, DNAJ homo 98.8 3.2E-09 1.1E-13 86.9 3.8 51 138-189 16-69 (73)
22 1wgx_A KIAA1903 protein; MYB D 98.7 8.5E-09 2.9E-13 84.2 5.2 46 140-185 8-56 (73)
23 2ltp_A Nuclear receptor corepr 98.1 3.4E-09 1.2E-13 89.9 0.0 50 135-185 11-60 (89)
24 2din_A Cell division cycle 5-l 98.6 4E-08 1.4E-12 78.5 6.1 47 137-185 6-52 (66)
25 2ckx_A NGTRF1, telomere bindin 98.6 4.3E-08 1.5E-12 82.1 5.9 45 142-186 2-50 (83)
26 2k9n_A MYB24; R2R3 domain, DNA 98.6 4.1E-08 1.4E-12 85.7 6.1 46 141-186 2-47 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 4.2E-08 1.4E-12 85.1 5.7 47 139-185 3-49 (105)
28 3zqc_A MYB3; transcription-DNA 98.5 5.4E-08 1.9E-12 88.0 4.3 47 140-186 2-48 (131)
29 1h8a_C AMV V-MYB, MYB transfor 98.5 1.4E-07 4.7E-12 84.8 6.7 48 138-185 25-72 (128)
30 2llk_A Cyclin-D-binding MYB-li 98.5 1.8E-07 6.2E-12 76.4 6.3 46 137-184 20-65 (73)
31 2eqr_A N-COR1, N-COR, nuclear 98.5 1.6E-07 5.6E-12 74.0 5.8 44 140-184 12-55 (61)
32 3osg_A MYB21; transcription-DN 98.4 2.9E-07 9.9E-12 82.7 6.4 48 138-186 9-56 (126)
33 2iw5_B Protein corest, REST co 98.4 4.1E-07 1.4E-11 88.6 7.1 50 136-186 129-178 (235)
34 2k9n_A MYB24; R2R3 domain, DNA 98.4 4.7E-07 1.6E-11 79.0 6.8 47 138-185 51-97 (107)
35 1gv2_A C-MYB, MYB proto-oncoge 98.4 3.6E-07 1.2E-11 79.2 6.0 47 138-185 54-100 (105)
36 3osg_A MYB21; transcription-DN 98.3 5.6E-07 1.9E-11 80.7 6.0 47 138-185 60-106 (126)
37 2roh_A RTBP1, telomere binding 98.3 6.8E-07 2.3E-11 79.9 6.2 48 139-186 30-81 (122)
38 2aje_A Telomere repeat-binding 98.3 5.9E-07 2E-11 78.4 5.0 49 139-187 12-64 (105)
39 3zqc_A MYB3; transcription-DNA 98.3 7.6E-07 2.6E-11 80.4 5.6 48 138-186 52-99 (131)
40 1h8a_C AMV V-MYB, MYB transfor 98.2 1.1E-06 3.8E-11 78.9 6.2 47 138-185 77-123 (128)
41 2juh_A Telomere binding protei 98.2 8.9E-07 3E-11 79.0 5.0 48 139-186 16-67 (121)
42 1h89_C C-MYB, MYB proto-oncoge 98.2 1.6E-06 5.4E-11 80.7 6.5 48 138-185 56-103 (159)
43 2cqq_A RSGI RUH-037, DNAJ homo 98.2 2.5E-06 8.7E-11 69.5 6.6 45 140-185 8-55 (72)
44 2yqk_A Arginine-glutamic acid 98.0 9E-06 3.1E-10 64.4 6.0 45 138-183 7-52 (63)
45 1h89_C C-MYB, MYB proto-oncoge 98.0 7.7E-06 2.6E-10 76.0 5.9 47 138-185 108-154 (159)
46 2xag_B REST corepressor 1; ami 97.9 7.2E-06 2.5E-10 88.4 6.2 48 138-186 378-425 (482)
47 4eef_G F-HB80.4, designed hema 97.8 3.7E-06 1.3E-10 68.2 0.9 44 140-183 20-66 (74)
48 2crg_A Metastasis associated p 97.7 3.3E-05 1.1E-09 62.5 5.4 44 140-184 8-52 (70)
49 1x58_A Hypothetical protein 49 97.7 5.7E-05 2E-09 59.5 5.5 46 139-185 7-55 (62)
50 4a69_C Nuclear receptor corepr 97.6 5.2E-05 1.8E-09 64.8 5.3 43 140-183 43-85 (94)
51 1ign_A Protein (RAP1); RAP1,ye 97.4 7.4E-05 2.5E-09 73.5 4.0 48 139-186 7-59 (246)
52 3hm5_A DNA methyltransferase 1 96.1 0.0077 2.6E-07 51.2 5.5 45 140-185 30-79 (93)
53 2fq3_A Transcription regulator 96.0 0.019 6.4E-07 49.8 7.8 69 488-556 22-98 (104)
54 2xb0_X Chromo domain-containin 95.9 0.0059 2E-07 61.5 4.7 32 137-168 165-196 (270)
55 1fex_A TRF2-interacting telome 95.8 0.007 2.4E-07 47.2 3.8 46 140-185 2-56 (59)
56 1ug2_A 2610100B20RIK gene prod 95.7 0.016 5.6E-07 48.7 5.6 45 141-185 34-80 (95)
57 4b4c_A Chromodomain-helicase-D 95.4 0.012 4.1E-07 56.5 4.8 31 139-169 133-163 (211)
58 1ofc_X ISWI protein; nuclear p 95.1 0.017 5.7E-07 59.1 4.7 48 141-189 111-158 (304)
59 2dce_A KIAA1915 protein; swirm 94.9 0.078 2.7E-06 46.4 7.8 70 487-556 23-101 (111)
60 2ebi_A DNA binding protein GT- 94.3 0.023 7.9E-07 47.1 2.9 45 141-185 5-62 (86)
61 4iej_A DNA methyltransferase 1 93.6 0.11 3.6E-06 44.1 5.6 45 140-185 30-79 (93)
62 1irz_A ARR10-B; helix-turn-hel 93.3 0.14 4.7E-06 40.5 5.5 48 140-187 7-58 (64)
63 2lr8_A CAsp8-associated protei 92.2 0.017 5.8E-07 46.1 0.0 44 141-185 15-60 (70)
64 2xag_B REST corepressor 1; ami 92.4 0.024 8.1E-07 61.2 0.0 45 139-184 188-232 (482)
65 3ny3_A E3 ubiquitin-protein li 90.4 0.15 5.1E-06 41.6 2.7 42 87-133 6-51 (75)
66 1ofc_X ISWI protein; nuclear p 89.1 0.29 1E-05 49.9 4.4 47 139-185 211-272 (304)
67 2y9y_A Imitation switch protei 87.9 0.4 1.4E-05 50.2 4.5 60 141-202 124-184 (374)
68 3nis_A E3 ubiquitin-protein li 87.7 0.45 1.6E-05 39.4 3.9 42 86-132 9-54 (82)
69 1v5n_A PDI-like hypothetical p 87.5 0.29 9.9E-06 41.0 2.7 32 82-115 47-78 (89)
70 4b4c_A Chromodomain-helicase-D 86.4 0.59 2E-05 44.6 4.5 43 141-183 8-54 (211)
71 2y9y_A Imitation switch protei 73.4 3.4 0.00012 43.2 5.2 44 140-183 228-286 (374)
72 2d8v_A Zinc finger FYVE domain 70.3 3.6 0.00012 32.6 3.4 33 81-117 7-39 (67)
73 1weo_A Cellulose synthase, cat 68.7 1.9 6.5E-05 36.1 1.6 33 82-115 16-52 (93)
74 1wg2_A Zinc finger (AN1-like) 59.3 21 0.00072 28.0 5.9 53 74-133 7-59 (64)
75 1z60_A TFIIH basal transcripti 57.9 4.6 0.00016 31.3 1.9 30 84-114 17-46 (59)
76 4fx0_A Probable transcriptiona 52.5 16 0.00056 32.2 5.0 57 499-555 26-82 (148)
77 3kp7_A Transcriptional regulat 50.5 24 0.00081 30.5 5.7 56 495-556 27-82 (151)
78 2bv6_A MGRA, HTH-type transcri 48.6 25 0.00085 29.9 5.4 56 496-556 27-82 (142)
79 2htj_A P fimbrial regulatory p 47.7 16 0.00056 28.8 3.8 43 514-556 3-45 (81)
80 2d1h_A ST1889, 109AA long hypo 47.3 39 0.0013 27.0 6.2 58 495-556 10-67 (109)
81 1wfp_A Zinc finger (AN1-like) 47.3 44 0.0015 26.9 6.1 48 79-133 22-69 (74)
82 2fa5_A Transcriptional regulat 46.9 42 0.0014 29.2 6.8 57 495-556 38-94 (162)
83 3k0l_A Repressor protein; heli 43.7 46 0.0016 29.1 6.6 59 493-556 33-91 (162)
84 3g3z_A NMB1585, transcriptiona 43.5 33 0.0011 29.3 5.4 56 496-556 21-76 (145)
85 1wfh_A Zinc finger (AN1-like) 43.4 53 0.0018 25.7 5.9 48 79-133 12-59 (64)
86 1ign_A Protein (RAP1); RAP1,ye 43.1 29 0.001 34.1 5.4 25 162-186 173-197 (246)
87 2fbi_A Probable transcriptiona 41.7 35 0.0012 28.7 5.3 55 497-556 27-81 (142)
88 3ech_A MEXR, multidrug resista 41.5 49 0.0017 28.1 6.2 56 496-556 25-82 (142)
89 2ve8_A FTSK, DNA translocase F 41.2 38 0.0013 27.2 4.9 45 509-557 12-56 (73)
90 2frh_A SARA, staphylococcal ac 39.8 38 0.0013 28.8 5.2 58 496-556 27-84 (127)
91 2k02_A Ferrous iron transport 39.7 33 0.0011 28.3 4.5 36 521-556 12-47 (87)
92 3boq_A Transcriptional regulat 39.6 41 0.0014 29.1 5.5 58 495-556 36-93 (160)
93 1lj9_A Transcriptional regulat 39.6 33 0.0011 29.1 4.8 56 496-556 19-74 (144)
94 3bro_A Transcriptional regulat 39.4 53 0.0018 27.6 6.1 57 496-556 24-81 (141)
95 2fbh_A Transcriptional regulat 38.4 43 0.0015 28.3 5.3 57 496-556 27-83 (146)
96 2cs3_A Protein C14ORF4, MY039 38.4 31 0.001 28.4 3.9 37 79-115 12-48 (93)
97 1bja_A Transcription regulator 38.1 36 0.0012 28.6 4.5 53 498-555 8-61 (95)
98 3fm5_A Transcriptional regulat 38.1 43 0.0015 28.8 5.4 59 494-556 27-85 (150)
99 4hbl_A Transcriptional regulat 38.0 42 0.0014 28.9 5.3 56 496-556 31-86 (149)
100 3bja_A Transcriptional regulat 38.0 41 0.0014 28.2 5.1 54 498-556 25-78 (139)
101 1sfx_A Conserved hypothetical 37.8 54 0.0018 26.1 5.6 55 497-556 11-65 (109)
102 3oop_A LIN2960 protein; protei 37.8 34 0.0012 29.1 4.6 54 498-556 29-82 (143)
103 3bpv_A Transcriptional regulat 37.8 43 0.0015 28.1 5.2 55 497-556 20-74 (138)
104 3jw4_A Transcriptional regulat 37.8 48 0.0017 28.4 5.6 64 490-556 25-88 (148)
105 1xn7_A Hypothetical protein YH 36.8 36 0.0012 27.3 4.2 35 521-555 12-46 (78)
106 2dk5_A DNA-directed RNA polyme 36.6 46 0.0016 27.4 5.0 51 503-556 17-67 (91)
107 3bj6_A Transcriptional regulat 36.3 57 0.002 27.8 5.9 56 496-556 30-85 (152)
108 2gxg_A 146AA long hypothetical 35.6 55 0.0019 27.7 5.6 56 495-556 26-81 (146)
109 2x4h_A Hypothetical protein SS 35.5 57 0.002 27.7 5.7 54 502-556 9-62 (139)
110 2qww_A Transcriptional regulat 35.4 60 0.002 27.9 5.8 56 496-556 31-86 (154)
111 2zc2_A DNAD-like replication p 34.4 15 0.00052 29.1 1.6 17 401-417 61-77 (78)
112 3s2w_A Transcriptional regulat 34.2 50 0.0017 28.7 5.2 58 494-556 38-95 (159)
113 3e7l_A Transcriptional regulat 33.7 34 0.0012 25.8 3.5 26 146-172 19-44 (63)
114 3hsr_A HTH-type transcriptiona 33.5 32 0.0011 29.3 3.7 56 496-556 26-81 (140)
115 2vn2_A DNAD, chromosome replic 33.5 69 0.0024 27.6 5.9 57 499-556 25-82 (128)
116 3e6m_A MARR family transcripti 32.9 67 0.0023 28.0 5.8 61 491-556 38-98 (161)
117 3cdh_A Transcriptional regulat 32.4 76 0.0026 27.3 6.0 56 496-556 33-88 (155)
118 2pex_A Transcriptional regulat 32.2 46 0.0016 28.6 4.6 57 495-556 36-92 (153)
119 3cjn_A Transcriptional regulat 32.2 61 0.0021 28.1 5.4 56 496-556 42-97 (162)
120 2xvc_A ESCRT-III, SSO0910; cel 31.9 51 0.0017 25.4 3.9 41 516-556 15-56 (59)
121 2rdp_A Putative transcriptiona 31.8 51 0.0018 28.1 4.8 56 496-556 32-87 (150)
122 1jgs_A Multiple antibiotic res 31.4 54 0.0019 27.5 4.8 55 497-556 25-79 (138)
123 2a61_A Transcriptional regulat 30.8 57 0.002 27.5 4.8 54 498-556 25-78 (145)
124 3u2r_A Regulatory protein MARR 30.5 66 0.0023 28.2 5.4 62 491-556 31-93 (168)
125 4b8x_A SCO5413, possible MARR- 30.4 40 0.0014 29.4 3.8 56 498-556 27-82 (147)
126 1tbx_A ORF F-93, hypothetical 30.4 61 0.0021 26.0 4.7 51 501-556 3-57 (99)
127 3nrv_A Putative transcriptiona 29.4 76 0.0026 26.9 5.5 52 500-556 34-85 (148)
128 1s3j_A YUSO protein; structura 29.3 61 0.0021 27.7 4.8 56 496-556 27-82 (155)
129 1ku9_A Hypothetical protein MJ 28.6 97 0.0033 26.0 6.0 57 496-556 16-72 (152)
130 2k6x_A Sigma-A, RNA polymerase 28.0 96 0.0033 24.2 5.3 42 513-554 11-57 (72)
131 3r0a_A Putative transcriptiona 27.7 1.1E+02 0.0039 25.9 6.2 58 495-556 15-73 (123)
132 1z91_A Organic hydroperoxide r 27.2 44 0.0015 28.4 3.5 55 497-556 31-85 (147)
133 2li6_A SWI/SNF chromatin-remod 27.2 59 0.002 27.9 4.2 37 150-186 53-96 (116)
134 3eco_A MEPR; mutlidrug efflux 27.0 88 0.003 26.2 5.4 57 496-556 21-78 (139)
135 1wfk_A Zinc finger, FYVE domai 26.9 53 0.0018 26.9 3.7 35 80-115 7-42 (88)
136 1wfl_A Zinc finger protein 216 26.6 1E+02 0.0036 24.7 5.2 47 80-133 23-69 (74)
137 3f3x_A Transcriptional regulat 26.0 1.1E+02 0.0036 25.9 5.7 54 497-556 27-81 (144)
138 1vz0_A PARB, chromosome partit 25.8 1.6E+02 0.0055 28.1 7.5 59 496-554 138-201 (230)
139 3bdd_A Regulatory protein MARR 25.6 1.1E+02 0.0039 25.4 5.8 52 500-556 25-76 (142)
140 2l4z_A DNA endonuclease RBBP8, 25.6 1.5E+02 0.0052 25.4 6.6 19 80-98 59-77 (123)
141 4aik_A Transcriptional regulat 25.5 1.1E+02 0.0036 26.8 5.7 53 500-556 25-77 (151)
142 3dpt_A ROCO, RAB family protei 25.2 67 0.0023 32.7 4.9 54 502-555 11-68 (332)
143 2eth_A Transcriptional regulat 25.2 65 0.0022 27.8 4.2 53 499-556 37-89 (154)
144 1p4x_A Staphylococcal accessor 25.1 66 0.0023 31.3 4.6 57 496-556 24-81 (250)
145 2ffw_A Midline-1; B-BOX, ring 25.1 1.4E+02 0.0048 23.6 5.9 37 80-118 28-66 (78)
146 2i5u_A DNAD domain protein; st 24.9 27 0.00093 28.2 1.5 18 400-417 65-82 (83)
147 2k4b_A Transcriptional regulat 24.6 49 0.0017 27.6 3.1 51 501-556 30-84 (99)
148 3deu_A Transcriptional regulat 24.5 78 0.0027 28.0 4.7 58 495-556 42-99 (166)
149 2jne_A Hypothetical protein YF 24.4 26 0.0009 29.7 1.3 32 83-115 33-70 (101)
150 2vrw_B P95VAV, VAV1, proto-onc 22.4 49 0.0017 34.1 3.3 36 81-117 356-393 (406)
151 2fu4_A Ferric uptake regulatio 22.4 95 0.0033 24.0 4.3 33 524-556 32-69 (83)
152 3tgn_A ADC operon repressor AD 22.0 1E+02 0.0035 25.9 4.9 49 502-556 34-82 (146)
153 1p6r_A Penicillinase repressor 21.7 1.1E+02 0.0037 23.7 4.5 49 503-556 6-58 (82)
154 2xb0_X Chromo domain-containin 21.6 1.3E+02 0.0043 30.0 5.9 46 140-185 3-52 (270)
155 1twf_L ABC10-alpha, DNA-direct 21.5 29 0.001 27.6 1.0 26 79-104 25-52 (70)
156 1r7j_A Conserved hypothetical 21.2 94 0.0032 25.5 4.2 35 521-556 17-51 (95)
157 1p4x_A Staphylococcal accessor 21.1 1.2E+02 0.004 29.4 5.6 57 496-556 148-205 (250)
158 1sd4_A Penicillinase repressor 20.8 1E+02 0.0035 25.6 4.5 50 502-556 6-59 (126)
159 2pjp_A Selenocysteine-specific 20.6 75 0.0025 27.1 3.6 52 504-555 59-110 (121)
160 2obp_A Putative DNA-binding pr 20.4 1.2E+02 0.0041 25.3 4.7 55 502-556 12-67 (96)
161 2qvo_A Uncharacterized protein 20.2 1.2E+02 0.004 24.3 4.6 56 499-555 5-60 (95)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.94 E-value=5.4e-27 Score=205.93 Aligned_cols=99 Identities=27% Similarity=0.400 Sum_probs=87.8
Q ss_pred ccCCCCCCCCCCC--CCCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc
Q 008687 459 RKDSNSNSRPSGQ--ASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK 536 (557)
Q Consensus 459 ~~~~~~~~~~~~~--~~~~~~~~~~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k 536 (557)
|.++|.++..... ..++.+.+|||.++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k 86 (108)
T 2cuj_A 7 GIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIK 86 (108)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred ccccCCCccccccCCCCCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhc
Confidence 3344444444332 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHCCCCCC
Q 008687 537 IEPSKIDRVYDMLVKKGLAPP 557 (557)
Q Consensus 537 iD~~K~~rIydFlv~~Gwi~~ 557 (557)
||++|+++|||||+++|||++
T Consensus 87 ID~~K~~rIydff~~~GWi~~ 107 (108)
T 2cuj_A 87 IDVNKTRKIYDFLIREGYITK 107 (108)
T ss_dssp SCHHHHHHHHHHHHTTTSSCC
T ss_pred ccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999974
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.93 E-value=3e-26 Score=195.49 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=79.4
Q ss_pred CCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCC
Q 008687 475 SHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 554 (557)
Q Consensus 475 ~~~~~~~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gw 554 (557)
....+|||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+++||++|+++|||||+++||
T Consensus 7 ~~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gw 86 (90)
T 2aqe_A 7 RSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGY 86 (90)
T ss_dssp CSSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 34478999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCC
Q 008687 555 APP 557 (557)
Q Consensus 555 i~~ 557 (557)
|++
T Consensus 87 i~~ 89 (90)
T 2aqe_A 87 ITK 89 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.9e-26 Score=192.15 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=77.6
Q ss_pred CCCCCcc-cccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHH
Q 008687 474 SSHVNDL-YIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVK 551 (557)
Q Consensus 474 ~~~~~~~-~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k-~g~lkk~dA~~l~kiD~~K~~rIydFlv~ 551 (557)
++.+.|+ ||+++||++|||++|++||+++||+|.+||.+|++||+|+++ ||.++++||+.+++||++|+++|||||++
T Consensus 5 ~~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~ 84 (88)
T 2elj_A 5 SSGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQS 84 (88)
T ss_dssp CCSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445789 999999999999999999999999999999999999999997 56699999999999999999999999999
Q ss_pred CCCC
Q 008687 552 KGLA 555 (557)
Q Consensus 552 ~Gwi 555 (557)
+|||
T Consensus 85 ~Gwi 88 (88)
T 2elj_A 85 QNWM 88 (88)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9997
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=5.9e-15 Score=115.74 Aligned_cols=55 Identities=44% Similarity=0.854 Sum_probs=52.5
Q ss_pred CCCCcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccC
Q 008687 134 LSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN 188 (557)
Q Consensus 134 ~~~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~ 188 (557)
.++|++...||++||.+|+++|+.||.+||..||.+|+ +||+.||+.||.++|++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999999999999999999999 99999999999999984
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=114.14 Aligned_cols=56 Identities=32% Similarity=0.817 Sum_probs=52.0
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCCC
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPL 194 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~~~pl 194 (557)
.....||++|+.+||+||++|| +||..||++||+||+.||+.||.++|+++++...
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~ 71 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN 71 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence 3468999999999999999999 9999999999999999999999999999987643
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=5.2e-13 Score=105.25 Aligned_cols=55 Identities=36% Similarity=0.677 Sum_probs=51.3
Q ss_pred CCcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCC
Q 008687 136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 190 (557)
Q Consensus 136 ~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~ 190 (557)
.++....||++||.+|+++|+.||.+||..||.+|++||+.||+.||.++++.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 4567889999999999999999999999999999999999999999999998764
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=9e-13 Score=105.04 Aligned_cols=55 Identities=27% Similarity=0.740 Sum_probs=49.4
Q ss_pred CCCcCCccccccccc-cCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCccccc
Q 008687 77 EGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 132 (557)
Q Consensus 77 ~~~~~~~~Cd~C~~d-i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~ 132 (557)
++-...+.||+|+.. |.+ .||+|.+|+|||||..||..|.+.+.|+++|+|+.+.
T Consensus 6 ~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 6 SGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 344456899999986 888 9999999999999999999999999999999999875
No 8
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.18 E-value=2.5e-11 Score=101.59 Aligned_cols=57 Identities=30% Similarity=0.624 Sum_probs=50.8
Q ss_pred cCCcccccccc-ccCCceeEEcCCCCC---cccchhhhhcccccCCCCCCCCcccccCCCCC
Q 008687 80 RALYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP 137 (557)
Q Consensus 80 ~~~~~Cd~C~~-di~~~~ri~C~~C~d---~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~~~~p 137 (557)
...+.||+|+. .|.+ .||+|.+|+| ||||..||..|.+...|+++|+|++|.....|
T Consensus 19 H~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp ESSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred eCcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 34789999997 6888 9999999999 99999999999999999999999999765444
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.04 E-value=2.1e-10 Score=87.47 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
...||.+|+.+|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988999999999999999999999875
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.03 E-value=2.4e-10 Score=87.18 Aligned_cols=46 Identities=24% Similarity=0.563 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
...||.+|+.+|+++|..||.+||..||.+|++||..||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5789999999999999999988999999999999999999999865
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.99 E-value=5e-10 Score=85.83 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 185 (557)
...||.+||..|+++|+.||.+||..||.+++ +||+.||+++|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999875
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=6.8e-10 Score=87.15 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=44.9
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+||.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456799999999999999999988999999999999999999999865
No 13
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.99 E-value=3.8e-10 Score=97.47 Aligned_cols=56 Identities=29% Similarity=0.700 Sum_probs=48.0
Q ss_pred Ccccccccc-ccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccCCCCCcCCCCCCchhH
Q 008687 82 LYHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE 148 (557)
Q Consensus 82 ~~~Cd~C~~-di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~~~~p~~~~~Wta~Ee 148 (557)
.+.||+|+. .|.+ .||+|.+|+|||||..||..+. | ..|+|+.|.+. ...|++.|+
T Consensus 31 gv~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~ 87 (98)
T 2dip_A 31 GIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK 87 (98)
T ss_dssp CCCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred CCCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence 489999997 6888 9999999999999999999985 8 79999988663 357988764
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=5.5e-10 Score=91.60 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=46.7
Q ss_pred cCCCCCCchhHHHHHHHHHHhCC-----CChHHHHHHhCCCCHHHHHHHHHhhccC
Q 008687 138 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMN 188 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~-----gnW~~Ia~~vgtkt~~ec~~hy~~~yi~ 188 (557)
+....||.+|+.+|+++|..||. ++|..||.+|++||..||+.||.+++..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999996 7899999999999999999999988754
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=87.17 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=45.0
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+-...||.+|+.+|+++|..||.+||..||.+|++||+.||+.||.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999875
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=2.3e-09 Score=87.29 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=44.7
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
+....||.+|+.+|+++++.|| .+|..||.+|++||..||+.||..++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999 59999999999999999999998775
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.89 E-value=2e-09 Score=85.93 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=43.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 185 (557)
...||.+||..|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999976 89999999999875
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.87 E-value=2.3e-09 Score=86.52 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=45.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhhc
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNVY 186 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~y 186 (557)
-...||.+|+.+|+++|+.||.++|..||.+++ +||..||+.+|.++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999 999999999998763
No 19
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.85 E-value=7.9e-10 Score=84.68 Aligned_cols=46 Identities=37% Similarity=0.921 Sum_probs=40.0
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCccccc
Q 008687 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 132 (557)
Q Consensus 79 ~~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~ 132 (557)
+...+.||+|+++| + .||+|++|+|||||..||..+. | .|++..|.
T Consensus 3 ~~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 3 DRFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp CSSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred CcCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 45678999999996 5 8999999999999999999976 6 68888774
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.78 E-value=3.6e-09 Score=90.45 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=49.1
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh-----ccCCCCCCCCCcc
Q 008687 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS 198 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~-----yi~~~~~plp~~~ 198 (557)
...||.+|+.+|++|+..||. ..|+.||.+|++||.+||+.||..+ .+.+...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 568999999999999999984 4599999999999999999999987 5666777777653
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=3.2e-09 Score=86.88 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.1
Q ss_pred cCCCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 008687 138 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS 189 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 189 (557)
+....||.+|+.+|++|+.+||. .+|..||.+|++||..||+.||..+ +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45688999999999999999984 4799999999999999999999865 443
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=8.5e-09 Score=84.16 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=42.9
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
...||++|+.+|..|+..|+. ++|+.||.+||+||++||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 5799999999999999999999876
No 23
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.08 E-value=3.4e-09 Score=89.94 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=45.7
Q ss_pred CCCcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 135 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 135 ~~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+.++....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4556788999999999999999999 5999999999999999999999854
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4e-08 Score=78.51 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=41.9
Q ss_pred CcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 137 p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
.+....||.+|+.+|+++++.|| .+|..||..+ +||+.||+.||..+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~-gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPII-GRTAAQCLEHYEFL 52 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhccc-CcCHHHHHHHHHHH
Confidence 35568999999999999999999 4999999955 59999999999866
No 25
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.61 E-value=4.3e-08 Score=82.14 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=42.5
Q ss_pred CCCchhHHHHHHHHHHhCCCChHHHHHH----hCCCCHHHHHHHHHhhc
Q 008687 142 DWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY 186 (557)
Q Consensus 142 ~Wta~Eel~LLeaie~~G~gnW~~Ia~~----vgtkt~~ec~~hy~~~y 186 (557)
.||.+||..|+++|++||.|+|..|+.. +.+||..+|+++|.++.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999997 78999999999999864
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.61 E-value=4.1e-08 Score=85.71 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=43.3
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
..||.+|+.+|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999889999999999999999999998763
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.59 E-value=4.2e-08 Score=85.11 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=44.3
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
....||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 35789999999999999999988999999999999999999999876
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.51 E-value=5.4e-08 Score=87.95 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
.+.||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46799999999999999999999999999999999999999998864
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.50 E-value=1.4e-07 Score=84.84 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=44.9
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+|+.+|+++|+.||.++|..||.+|++||..||+.||.++
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 446899999999999999999988999999999999999999999875
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=76.45 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=42.5
Q ss_pred CcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008687 137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (557)
Q Consensus 137 p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (557)
.+....||.+||.+|++++..|| .+|..||.++ +||..+|+.+|..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 45678999999999999999999 6799999999 9999999999974
No 31
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.6e-07 Score=73.98 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (557)
...||.+|..+|++++.+|| .+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999 899999999999999999999964
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.41 E-value=2.9e-07 Score=82.66 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=44.3
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
.-...||.+|+.+|+++|+.||. ||..||.+|++||+.||+.||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 34678999999999999999995 9999999999999999999998764
No 33
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.38 E-value=4.1e-07 Score=88.61 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=45.1
Q ss_pred CCcCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 136 ~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
.+-....||.+|..++++|+..|| .||..||++|||||..||+.||.++-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999 89999999999999999999998653
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.38 E-value=4.7e-07 Score=78.97 Aligned_cols=47 Identities=17% Similarity=0.488 Sum_probs=43.5
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+|+.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999 6999999999999999999999764
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.38 E-value=3.6e-07 Score=79.16 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.5
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+|+..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3467999999999999999999 7999999999999999999999754
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.32 E-value=5.6e-07 Score=80.75 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=43.4
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+||.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3457899999999999999999 8999999999999999999999764
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.31 E-value=6.8e-07 Score=79.90 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=44.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 186 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 186 (557)
-...||.+||..|++||+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999986 6899999999999875
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.28 E-value=5.9e-07 Score=78.35 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhcc
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYM 187 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~yi 187 (557)
-...||.+||..|++||+.||.|+|..|+... .+||..+|+++|.++.-
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999999999999976 68999999999998754
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.27 E-value=7.6e-07 Score=80.39 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=44.1
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
+....||.+|+.+|++++..|| ++|..||.+|++||..+|+.||..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 89999999999999999999998763
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.24 E-value=1.1e-06 Score=78.87 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=43.4
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+-...||.+|+..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999 7999999999999999999999754
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.22 E-value=8.9e-07 Score=79.03 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=44.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 186 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 186 (557)
-...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999996 6899999999998864
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.20 E-value=1.6e-06 Score=80.67 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=44.6
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+....||.+|+..|++++..||.++|..||.+|++||+.||+.||.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346799999999999999999987899999999999999999999875
No 43
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.19 E-value=2.5e-06 Score=69.46 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
...||.+|+.+|..|+.+|+- +.|+.||.++ +||.+||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 568999999999999999984 4599999999 59999999999865
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=9e-06 Score=64.44 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=41.5
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHH
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYT 183 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~-vgtkt~~ec~~hy~ 183 (557)
+....||++|-.++++|+.+|| -||..|+.+ |++||..||..+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3467999999999999999999 799999996 99999999999885
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.96 E-value=7.7e-06 Score=76.00 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.6
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
+-...||.+|+..|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999 7999999999999999999999854
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.95 E-value=7.2e-06 Score=88.39 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=44.1
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
-....||.+|-.++++|+..|| .||..||++|||||..||+.||.++.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999 79999999999999999999998653
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.81 E-value=3.7e-06 Score=68.18 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=39.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCC---ChHHHHHHhCCCCHHHHHHHHH
Q 008687 140 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT 183 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~g---nW~~Ia~~vgtkt~~ec~~hy~ 183 (557)
...||.+|..+|-.|+.+|+-+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999865 6999999999999999999984
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=3.3e-05 Score=62.48 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.9
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 184 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~-vgtkt~~ec~~hy~~ 184 (557)
...||++|-.++.+|+..|| -||..|+.+ |++||..||..+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999 799999995 999999999999973
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.66 E-value=5.7e-05 Score=59.47 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHH---HhCCCCHHHHHHHHHhh
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV 185 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~---~vgtkt~~ec~~hy~~~ 185 (557)
....||.+|+..|++||+.||- +|..|+. ++..||.-..+++|.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 4678999999999999999995 9999994 66789999999999875
No 50
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.63 E-value=5.2e-05 Score=64.79 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=41.0
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHH
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYT 183 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~ 183 (557)
...||++|..++.+++.+|| .+|..||++|++||..||..+|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence 47899999999999999999 89999999999999999999995
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.43 E-value=7.4e-05 Score=73.53 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCC-----hHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gn-----W~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
-...||.+|+..||++++++|-.+ |.+||.++.+||..+|+.||..+-
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999998532 999999999999999999998763
No 52
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.09 E-value=0.0077 Score=51.20 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHh-----CCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v-----gtkt~~ec~~hy~~~ 185 (557)
..+||.+|+..|++.+++|| ..|--|++.. +.||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 6999999999 479999999999764
No 53
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=96.02 E-value=0.019 Score=49.80 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=60.4
Q ss_pred cCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhC--CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 488 TQLLSEAEKRLCCEI------RLAPPLYLRMQEVMSREIFSG--NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 488 ~~LLs~~Ek~LC~~l------rL~P~~YL~iK~~Li~E~~k~--g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+..++-|++.+-.+ .=.|..||.|...||.-...+ -.|+.+++++.+.-|++-+.||+.||..-|+|.
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 466889999998875 346999999999999888743 479999999999999999999999999999995
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.89 E-value=0.0059 Score=61.48 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=28.8
Q ss_pred CcCCCCCCchhHHHHHHHHHHhCCCChHHHHH
Q 008687 137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE 168 (557)
Q Consensus 137 p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~ 168 (557)
+-+.-.|+++|+..||-||..||||+|+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 44667999999999999999999999999955
No 55
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.80 E-value=0.007 Score=47.16 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCCCCchhHHHHHHHHHHh--------CCCChHHHHH-HhCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~--------G~gnW~~Ia~-~vgtkt~~ec~~hy~~~ 185 (557)
+..||++||..|++.|..| |-.-|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999 4334999999 89999999999999984
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.65 E-value=0.016 Score=48.68 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=41.2
Q ss_pred CCCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 141 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
--||.+++..+|.++++-|. .-|..||..+|+||++|+.++|.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 36999999999999999984 3699999999999999999999876
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.45 E-value=0.012 Score=56.54 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.8
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHH
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH 169 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~ 169 (557)
+...||++|+..||-||..||+|+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3568999999999999999999999999663
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.07 E-value=0.017 Score=59.11 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=42.7
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 008687 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNS 189 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 189 (557)
.+||..+-..++.|++.||-++|+.||..|++||++|++ +|.+.|...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHh
Confidence 589999999999999999999999999999999999995 555666554
No 59
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.078 Score=46.43 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=60.2
Q ss_pred ccCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHH--hCCCCCHHHhhhhhc--cCchhHHHHHHHHHHCCCCC
Q 008687 487 ETQLLSEAEKRLCCEI-----RLAPPLYLRMQEVMSREIF--SGNVNNKADAHHLFK--IEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 487 g~~LLs~~Ek~LC~~l-----rL~P~~YL~iK~~Li~E~~--k~g~lkk~dA~~l~k--iD~~K~~rIydFlv~~Gwi~ 556 (557)
..+..++-|++.+-.+ .=-|..||.|...||.-.. ..-.|+.+++++.++ -|++-+.||+.||-..|+|.
T Consensus 23 ~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 23 DRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp CSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred CcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 3567889999888776 4589999999999998877 345799999999885 79999999999999999985
No 60
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.28 E-value=0.023 Score=47.09 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCCchhHHHHHHHHHHhCC---------CChHHHHHHhC----CCCHHHHHHHHHhh
Q 008687 141 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV 185 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~---------gnW~~Ia~~vg----tkt~~ec~~hy~~~ 185 (557)
..||.+|.+.||++...... .-|++||+.|. .+|+.||+..|.++
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57999999999998764221 15999999986 69999999999765
No 61
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.56 E-value=0.11 Score=44.13 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-----CCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-----tkt~~ec~~hy~~~ 185 (557)
..+||.+|+..|++.++.|+ -.|--|++... .||.++.+.||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 47999999999999999999 59999999874 69999999999865
No 62
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.26 E-value=0.14 Score=40.55 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCC--hHHHHHHhC--CCCHHHHHHHHHhhcc
Q 008687 140 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM 187 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gn--W~~Ia~~vg--tkt~~ec~~hy~~~yi 187 (557)
+-.||.+....+++||+++|... |..|-+.|+ +-|..++..|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999432 789999988 5799999999988754
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.22 E-value=0.017 Score=46.06 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 008687 141 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 185 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (557)
--||.+|+..+|..+++-|. .-|..||..+ +||++|+..+|.+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 46999999999999999984 2699999999 79999999999875
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.40 E-value=0.024 Score=61.23 Aligned_cols=45 Identities=16% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008687 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (557)
+...||.+|..++.+++..|| .||..|+.+|++||..+|..+|..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhcc
Confidence 456899999999999999999 899999999999999999998864
No 65
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=90.38 E-value=0.15 Score=41.59 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=32.4
Q ss_pred ccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCcccccC
Q 008687 87 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (557)
Q Consensus 87 ~C~~di~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (557)
.|++.+. +.+.|+|..|. ..-||..||..+. |. .|.|.+...
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~s 51 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTTS 51 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEEC
T ss_pred ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEEc
Confidence 4777764 66999999995 3569999999866 75 688988743
No 66
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.06 E-value=0.29 Score=49.93 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCCCCCchhHHHHHHHHHHhCC---CChHHHHH------------HhCCCCHHHHHHHHHhh
Q 008687 139 ICPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV 185 (557)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~------------~vgtkt~~ec~~hy~~~ 185 (557)
-...||.+|+..||=++..||+ |+|+.|-. ++.+||+.|+..|-..+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 3578999999999999999999 99999974 45689999988776544
No 67
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=87.89 E-value=0.4 Score=50.18 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccCCCCCCCCCcccccc
Q 008687 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 202 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~~~~~plp~~~~~~~ 202 (557)
.+|+..+=..++.|++.||-++-+.||..|+ +||++|++ .|.+.|.... -.+.+....++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~ 184 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK 184 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence 5899999999999999999999999999998 99999999 7888887764 34566555544
No 68
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=87.73 E-value=0.45 Score=39.36 Aligned_cols=42 Identities=29% Similarity=0.568 Sum_probs=32.4
Q ss_pred cccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCccccc
Q 008687 86 NYCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMD 132 (557)
Q Consensus 86 d~C~~di~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~ 132 (557)
..|+..+. +.+.|+|..|. ..-||..||..+. |. +|.|.+..
T Consensus 9 ~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~ 54 (82)
T 3nis_A 9 RNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDI 54 (82)
T ss_dssp SCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEE
T ss_pred CCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEE
Confidence 35777764 56999999994 4569999999866 85 78998764
No 69
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.55 E-value=0.29 Score=40.98 Aligned_cols=32 Identities=34% Similarity=0.769 Sum_probs=28.1
Q ss_pred CccccccccccCCceeEEcCCCCCcccchhhhhc
Q 008687 82 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 115 (557)
Q Consensus 82 ~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~ 115 (557)
.+.|+.|++.+.+ .+|+|..| +|+|-+.|...
T Consensus 47 ~~~C~~C~~~~~~-~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTI-WSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCS-CEEECTTT-CCCCCHHHHHC
T ss_pred CeEeCCCCCcCCC-cEEEcCCC-CCeEcHHhcCC
Confidence 3789999999876 89999999 59999999864
No 70
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.39 E-value=0.59 Score=44.55 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=37.5
Q ss_pred CCCCchhHHHHHHHHHHhC--CCChHHHHHHh--CCCCHHHHHHHHH
Q 008687 141 PDWNADDEILLLEGIEMYG--LGNWAEIAEHV--GTKTKELCIEHYT 183 (557)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G--~gnW~~Ia~~v--gtkt~~ec~~hy~ 183 (557)
.+||..|-..|+.|+..|| .+.|++|+... ..||.++++..|.
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~ 54 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGE 54 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHH
Confidence 6899999999999999999 68899999875 4799999986443
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=73.37 E-value=3.4 Score=43.20 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=37.5
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHh------------CCCCHHHHHHHHH
Q 008687 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHV------------GTKTKELCIEHYT 183 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~v------------gtkt~~ec~~hy~ 183 (557)
...||.+|+.-||=++..||+ |+|+.|-..| .+||+.|+..|-.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~ 286 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN 286 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 578999999999999999999 9999996654 4799999866544
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.29 E-value=3.6 Score=32.58 Aligned_cols=33 Identities=39% Similarity=0.839 Sum_probs=26.8
Q ss_pred CCccccccccccCCceeEEcCCCCCcccchhhhhccc
Q 008687 81 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 117 (557)
Q Consensus 81 ~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~ 117 (557)
....|.+|..+-+ ++|..|.+--.|..||..+-
T Consensus 7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 5668999999844 79999986556999999854
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.66 E-value=1.9 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.815 Sum_probs=27.8
Q ss_pred Ccccccccccc----CCceeEEcCCCCCcccchhhhhc
Q 008687 82 LYHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSV 115 (557)
Q Consensus 82 ~~~Cd~C~~di----~~~~ri~C~~C~d~dLC~~CF~~ 115 (557)
...|.+|+.++ .+.+++-|.+|. |-+|-.||-.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEY 52 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEY 52 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccC-ChhhHHHHHH
Confidence 35799999774 466999999996 9999999976
No 74
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.35 E-value=21 Score=28.02 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=35.9
Q ss_pred CCCCCCcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008687 74 GAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (557)
Q Consensus 74 ~~~~~~~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (557)
+....+....+|..|.+.+.- +-++| .|. ..+|.. .+++..|.-..+|+-+..
T Consensus 7 ~~~~~~~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HR~~e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 7 GPSRPVRPNNRCFSCNKKVGV-MGFKC-KCG-STFCGS----HRYPEKHECSFDFKEVGS 59 (64)
T ss_dssp CSSCCSCCSCSCTTTCCCCTT-SCEEC-TTS-CEECSS----SCSSTTTTCCCCCSCSCC
T ss_pred CCCCCCCcCCcChhhCCcccc-cCeEe-ecC-CEeccc----CCCccccCCCcchhHHhH
Confidence 344445566799999987653 46999 786 456654 556667777777876643
No 75
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.92 E-value=4.6 Score=31.27 Aligned_cols=30 Identities=27% Similarity=0.729 Sum_probs=24.8
Q ss_pred cccccccccCCceeEEcCCCCCcccchhhhh
Q 008687 84 HCNYCNKDITGKIRIKCAVCPDFDLCIECFS 114 (557)
Q Consensus 84 ~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~ 114 (557)
.|-+|.+.+....+|+|..|. ..+|.+|=.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~ 46 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV 46 (59)
T ss_dssp EETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred cccccCcccCCCccEECCccC-cCcccchhH
Confidence 599999998765679999997 678999844
No 76
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=52.52 E-value=16 Score=32.17 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 008687 499 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 555 (557)
Q Consensus 499 C~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 555 (557)
...++|.|.+|..+--+...+-..+|.++..+.-..+.+|..-+.++.+=|+++|||
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 457899999998776655444445677888888888999999999999999999998
No 77
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=50.52 E-value=24 Score=30.54 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
-...+..++|.|..|..+.-+ .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 27 LKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567789999999887655 34678888877888999999999999999999984
No 78
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=48.64 E-value=25 Score=29.93 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+..++|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTIL-----WDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHH-----HHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 45667889999888766543 245678888888888999999999999999999984
No 79
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=47.71 E-value=16 Score=28.79 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 514 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 514 ~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..++.-...+|.++..+.-..+.+...-+++..+-|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3445444466888999988889999999999999999999984
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=47.31 E-value=39 Score=27.04 Aligned_cols=58 Identities=10% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+..+....+|.|..+..+..++- .++.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~l~~----~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 10 KDEIRCCYKITDTDVAVLLKMVE----IEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH----HCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCHHHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 34455668898888776655441 36778888888889999999999999999999984
No 81
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.26 E-value=44 Score=26.95 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=34.2
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008687 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (557)
Q Consensus 79 ~~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (557)
+....+|..|.+.+.- +.++| .|. ..+|.. .+++..|.-..+|+-+..
T Consensus 22 k~~~~RC~~C~kkvgL-~~f~C-rCg-~~FCs~----HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGV-TGFKC-RCG-STFCGT----HRYPESHECQFDFKGVAS 69 (74)
T ss_dssp TCCCCBCSSSCCBCTT-TCEEC-TTS-CEECTT----TCSTTTSCCCSCTTSCCC
T ss_pred cccCccchhhcCcccc-cceEe-ccC-CEeccc----cCCCcCCCCcCchhHHhH
Confidence 4566899999988664 57999 786 556755 455567887778876543
No 82
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.87 E-value=42 Score=29.17 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.|...++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITILA-----LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH-----HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4455578899999987665432 36778888888888999999999999999999984
No 83
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.67 E-value=46 Score=29.11 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 493 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 493 ~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..=.+....++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 33 ~~~~~~l~~~glt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 33 KYLTEHLSALEISLPQFTALSVLA-----AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH-----HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 333445567899999988776432 45678888888888999999999999999999984
No 84
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=43.50 E-value=33 Score=29.29 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998776543 33458888888888999999999999999999984
No 85
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.38 E-value=53 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.330 Sum_probs=33.9
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008687 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (557)
Q Consensus 79 ~~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (557)
+....+|..|.+.+.- +.++| .|. ..+|.. .+++..|.-..+|+-+..
T Consensus 12 k~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL-TGFMC-RCG-TTFCGS----HRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp CSSCCCCTTTCCCCCT-TCEEC-SSS-CEECTT----TCSTTTTTCCCCCSCCCC
T ss_pred CCcCCcChhhCCccCc-cCEEe-ecC-CEeccc----cCCcccCCCCchhhHHHH
Confidence 4566899999987653 46999 686 556754 556667877778876543
No 86
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=43.07 E-value=29 Score=34.06 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=22.8
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 162 NWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 162 nW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
-|..||++..++|..-.+++|.++-
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHH
Confidence 5999999999999999999998653
No 87
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.69 E-value=35 Score=28.75 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899999887775442 34567888888889999999999999999999984
No 88
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=41.52 E-value=49 Score=28.11 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.7
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCE--IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~--lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+.. ++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLID-----EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH-----HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 445666 899999998776442 45678888888888999999999999999999984
No 89
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=41.18 E-value=38 Score=27.24 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCCC
Q 008687 509 YLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 557 (557)
Q Consensus 509 YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~~ 557 (557)
|-..++.++ ..+..+.+-...-|+|--|+..+|.|-|...|+|.|
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 445555554 345666666777899999999999999999999975
No 90
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.82 E-value=38 Score=28.79 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
......++|.|..|..+.-+.- ..++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYISE---NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHH---TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHh---ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4556788999999987765431 122678888888888999999999999999999985
No 91
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=39.72 E-value=33 Score=28.32 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=33.3
Q ss_pred HhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 521 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 521 ~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...|.++.++.-..|.+...-+++..+.|.++|+|.
T Consensus 12 ~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 12 ALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 378999999999999999999999999999999874
No 92
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=39.65 E-value=41 Score=29.14 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
++.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 36 ~~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 36 NRQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3445558899999998775441 245678888888889999999999999999999984
No 93
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=39.63 E-value=33 Score=29.09 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...+..++|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 19 ~~~~~~~~lt~~~~~iL~~l-----~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 19 NIEFKELSLTRGQYLYLVRV-----CENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHTGGGTCTTTHHHHHHHH-----HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34566788999998776543 245678888888889999999999999999999984
No 94
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.42 E-value=53 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g-~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...+..++|.|..|..+.-+.- .+| .++..+....+.++..-+.++.+-|+++|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~~----~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLSR----NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH----TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHH----CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 4455678999998877654321 232 68888888889999999999999999999984
No 95
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.43 E-value=43 Score=28.34 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+..++|.|..|..+..+. ..+|.++..+....+.++..-+.++.+=|+++|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 27 DRRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344567889999987765441 256778888888889999999999999999999984
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.41 E-value=31 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.581 Sum_probs=30.3
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhc
Q 008687 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 115 (557)
Q Consensus 79 ~~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~ 115 (557)
......|..|..-+.++-+++|..-+.-.+|-.|-..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 4567899999999998899999877777788888654
No 97
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=38.11 E-value=36 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhh-hhccCchhHHHHHHHHHHCCCC
Q 008687 498 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHH-LFKIEPSKIDRVYDMLVKKGLA 555 (557)
Q Consensus 498 LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~-l~kiD~~K~~rIydFlv~~Gwi 555 (557)
=|+..+|.+..|-.+. -..+++..+.++... ...+|.+-+.+=...|++.|||
T Consensus 8 ~~~~~~L~~~QfsiL~-----~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATILI-----TIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHHH-----HHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHHH-----HHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 3788889998886543 335777888888888 7789999999999999999998
No 98
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=38.08 E-value=43 Score=28.78 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 494 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 494 ~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.=.+.+..++|.|..|..+.-+. ..++.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 27 AVNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 33455567899999988776332 244467777777888999999999999999999984
No 99
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=37.98 E-value=42 Score=28.93 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
......++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 31 EKKLKQFGITYSQYLVMLTLW-----EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 344567899999988776442 35778888888888999999999999999999984
No 100
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=37.98 E-value=41 Score=28.20 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=43.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 498 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 498 LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+...+|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 25 AIEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HTGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 345678888888766543 246678888888889999999999999999999984
No 101
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=37.84 E-value=54 Score=26.11 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+....++|.|..+..+.-+ ..+|.++..+.-..+.++...+.++.+-|.+.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566888988877655433 234668888888888999999999999999999984
No 102
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=37.78 E-value=34 Score=29.14 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 498 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 498 LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 29 ~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 29 SIASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HTTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 3446788888887775443 23677878888888999999999999999999984
No 103
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.78 E-value=43 Score=28.06 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRIH-----REPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHHH-----HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456788888887665332 45778888888888999999999999999999984
No 104
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.77 E-value=48 Score=28.37 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 490 LLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 490 LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+...=.+....++|.|..|..+.-+.- ..+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 25 KLKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3445555667789999999987765432 122678888888888999999999999999999985
No 105
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=36.85 E-value=36 Score=27.34 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=32.8
Q ss_pred HhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 008687 521 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 555 (557)
Q Consensus 521 ~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 555 (557)
..+|..+.++.-..|.+...-+++..+.|.++|.|
T Consensus 12 ~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 12 ALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 47899999999999999999999999999999987
No 106
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=36.63 E-value=46 Score=27.43 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 503 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 503 rL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+|.|.+++.++-+- +.-+.| +.-.+...-+.++...+.+|.+-|.++|||.
T Consensus 17 ~Lt~~q~~Vl~~I~--~~g~~g-i~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQEKLVYQIIE--DAGNKG-IWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSHHHHHHHHH--HHCTTC-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH--HcCCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 55777777776543 222335 4445566667899999999999999999985
No 107
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.25 E-value=57 Score=27.83 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGLS-----LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 345567899998887765432 45678888888888999999999999999999984
No 108
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=35.61 E-value=55 Score=27.67 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
-...+...+|.|..|..+..+ . +|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345667888988888766543 2 6778888888888999999999999999999984
No 109
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=35.50 E-value=57 Score=27.74 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.3
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 502 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 502 lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
++|.+..+-.++. |..-...++.++..+.-..+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~-l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLT-IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHH-HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHH-HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 4677777766663 32222256788888888889999999999999999999983
No 110
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.37 E-value=60 Score=27.85 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVIY-----STPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345667899998887765432 45668888888888999999999999999999984
No 111
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=34.45 E-value=15 Score=29.10 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCchHHHH
Q 008687 401 DLKEARAAGCRTSAEAD 417 (557)
Q Consensus 401 eLqeyR~~Gi~tl~e~~ 417 (557)
-|..|++.||+|+++++
T Consensus 61 Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 61 ILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHcCCCCHHHHh
Confidence 47899999999999874
No 112
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=34.23 E-value=50 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 494 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 494 ~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.=.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 38 ~~~~~l~~~~lt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 38 YIGKKIEPYGIGSGQFPFLMRLY-----REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHGGGTCCTTTHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33455667899999997776442 34677888888888999999999999999999984
No 113
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.69 E-value=34 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHhCC
Q 008687 146 DDEILLLEGIEMYGLGNWAEIAEHVGT 172 (557)
Q Consensus 146 ~Eel~LLeaie~~G~gnW~~Ia~~vgt 172 (557)
-|...+..+++.+| ||+..+|..+|-
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 45667789999999 999999999984
No 114
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=33.50 E-value=32 Score=29.34 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...+..++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 26 ~~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 26 TNYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 34456788999888766433 246778888888888999999999999999999984
No 115
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.48 E-value=69 Score=27.63 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 499 CCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 499 C~~lrL~P~~YL~iK~~Li~E~~k~-g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...++|.+..|+.+=.++- -.-.+ ..++.++.-.-+.+++..+.++.+.|+++|||.
T Consensus 25 y~~lgLt~~e~~vll~L~~-~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQS-FFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHHH-HHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3467788888775543332 22222 237777777778999999999999999999984
No 116
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=32.94 E-value=67 Score=28.01 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 491 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 491 Ls~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+...-.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34444556678999999997776543 23567778888888999999999999999999984
No 117
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=32.44 E-value=76 Score=27.26 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.....+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999888665422 356778888888889999999999999999999984
No 118
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.20 E-value=46 Score=28.62 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
-.+.+..++|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 36 ~~~~~~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 36 YRGLLKALDLTYPQYLVMLVL-----WETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHTTTTTCCHHHHHHHHHH-----HHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCHHHHHHHHHH-----HhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 344556788999888766533 235678888888888999999999999999999984
No 119
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.18 E-value=61 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAILS-----AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344567899998887775432 45678888888889999999999999999999984
No 120
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.88 E-value=51 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=34.7
Q ss_pred HHHHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 516 MSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 516 Li~E~~-k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
|+.+.. ++|++..+.+-+-+.++...+-.+..=|.++|.|.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 344444 78999999999999999999999999999999874
No 121
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=31.82 E-value=51 Score=28.07 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+.+...+|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 345567789888887765432 34667888888888999999999999999999984
No 122
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=31.41 E-value=54 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|+++|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSIR-----CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHHH-----HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34556788888887665442 34556777777888999999999999999999984
No 123
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.75 E-value=57 Score=27.53 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 498 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 498 LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+...+|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 4466788888887765432 24668888888888999999999999999999984
No 124
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=30.50 E-value=66 Score=28.25 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 491 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 491 Ls~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k-~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+...=.+.+..++|.|..|..+.-+.- . ++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRS----VHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH----HTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 334445556888999999987753321 2 3577888888888999999999999999999984
No 125
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=30.43 E-value=40 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 498 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 498 LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
....++|.+..|-.+.-+.. ..+|.++.++.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~~---~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLTF---SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHHT---SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHHH---CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 34678999999876643321 245678888888888999999999999999999984
No 126
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=30.37 E-value=61 Score=26.00 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=38.1
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHh----hhhhccCchhHHHHHHHHHHCCCCC
Q 008687 501 EIRLAPPLYLRMQEVMSREIFSGNVNNKADA----HHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 501 ~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA----~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.++|.|..|..+..+ ..+|.++..+. -..+.++..-+.++.+-|+++|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777655432 34567777666 5667899999999999999999984
No 127
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=29.40 E-value=76 Score=26.94 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 500 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 500 ~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 34 ~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 34 QKFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3467888887665543 356678888888888999999999999999999984
No 128
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=29.27 E-value=61 Score=27.73 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
...+...+|.|..|..+..+- ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASLK-----KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445566899999887765432 34567888888888999999999999999999983
No 129
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=28.56 E-value=97 Score=26.00 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+....++|.|..+-.+.-+.+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~~----~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILYL----SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH----CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4566778999888765554422 34678888888888999999999999999999984
No 130
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=27.97 E-value=96 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCHHHhhhhhc-----cCchhHHHHHHHHHHCCC
Q 008687 513 QEVMSREIFSGNVNNKADAHHLFK-----IEPSKIDRVYDMLVKKGL 554 (557)
Q Consensus 513 K~~Li~E~~k~g~lkk~dA~~l~k-----iD~~K~~rIydFlv~~Gw 554 (557)
...||....+.|.++-.+....++ +|+..+..||++|-+.|+
T Consensus 11 ~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 11 IKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 334665555778899877777664 788999999999999995
No 131
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.66 E-value=1.1e+02 Score=25.88 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCC-CCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNV-NNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~-lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
|..|-..++|.|..+-.+..+. ..+|. ++..+.-..+.++..-+.+..+-|.+.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L~----~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSFL----NEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5556667899988765554332 13444 8888888888999999999999999999983
No 132
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.22 E-value=44 Score=28.39 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.+...+|.|..|..+..+. ..|.++..+....+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567788888887665433 34567888888888999999999999999999984
No 133
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.18 E-value=59 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHhC-------CCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008687 150 LLLEGIEMYG-------LGNWAEIAEHVGTKTKELCIEHYTNVY 186 (557)
Q Consensus 150 ~LLeaie~~G-------~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (557)
.|-.+|...| -..|.+||..+|-......+.||.++-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4556666666 137999999999766778888888763
No 134
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.01 E-value=88 Score=26.19 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~-g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.......+|.|..|..+..+.- .+ +.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 21 ~~~~~~~~lt~~~~~vL~~l~~----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 21 DQKLEQFDITNEQGHTLGYLYA----HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHGGGTCCHHHHHHHHHHHH----STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445678899988877755432 22 478888888888999999999999999999984
No 135
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.88 E-value=53 Score=26.93 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=25.1
Q ss_pred cCCccccccccccC-CceeEEcCCCCCcccchhhhhc
Q 008687 80 RALYHCNYCNKDIT-GKIRIKCAVCPDFDLCIECFSV 115 (557)
Q Consensus 80 ~~~~~Cd~C~~di~-~~~ri~C~~C~d~dLC~~CF~~ 115 (557)
.....|..|++..+ -..+++|-.|. ..+|..|-..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCC-CEEChhHcCC
Confidence 34457999998643 12789999997 5588888654
No 136
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.55 E-value=1e+02 Score=24.73 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred cCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008687 80 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (557)
Q Consensus 80 ~~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (557)
....+|..|.+.+.- .-++|. |. ..+|.. .+++..|.-..+|+-...
T Consensus 23 ~~~nRC~~CrKkvgL-~gf~Cr-Cg-~~FCs~----HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGL-TGFDCR-CG-NLFCGL----HRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp SCTTBCSSSCCBCGG-GCEECT-TS-CEECSS----SCSTTTTTCCCCGGGTSS
T ss_pred CcCCcChhhCCcccc-cCeecC-CC-CEechh----cCCCccCCCcchhhhhch
Confidence 345689999987553 458999 87 446643 566677888888876643
No 137
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=25.96 E-value=1.1e+02 Score=25.91 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 497 RLCCEI-RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 497 ~LC~~l-rL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.+... +|.|..|..+..+. .+|. +.++.-..+.++..-+.++.+=|+++|||.
T Consensus 27 ~~l~~~~~lt~~~~~iL~~l~-----~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 27 NRLGKLMNLSYLDFSILKATS-----EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH-----HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344555 99999987765442 3444 888888888999999999999999999984
No 138
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=25.80 E-value=1.6e+02 Score=28.12 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.5
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEV-----MSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 554 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~-----Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gw 554 (557)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.|.+++......+++-++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 45677777776543222222 145666889999999999999998887789999999887
No 139
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=25.65 E-value=1.1e+02 Score=25.38 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 500 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 500 ~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 25 KQLGISLTRYSILQTLL-----KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33588888887665432 34668888888888999999999999999999983
No 140
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.60 E-value=1.5e+02 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=13.8
Q ss_pred cCCccccccccccCCceeE
Q 008687 80 RALYHCNYCNKDITGKIRI 98 (557)
Q Consensus 80 ~~~~~Cd~C~~di~~~~ri 98 (557)
.....|..|++.|.+...+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v 77 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLL 77 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEE
T ss_pred ccCCcCcCCCCCcCCcEEE
Confidence 4457899999999864333
No 141
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=25.46 E-value=1.1e+02 Score=26.82 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 500 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 500 ~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..++|.|..|..+-.+- ..++..+-++.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~gLt~~q~~vL~~L~----~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN----RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHHH----HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH----HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 45789999987653321 134556656666778899999999999999999984
No 142
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=25.21 E-value=67 Score=32.75 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=40.4
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc---cCc-hhHHHHHHHHHHCCCC
Q 008687 502 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK---IEP-SKIDRVYDMLVKKGLA 555 (557)
Q Consensus 502 lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k---iD~-~K~~rIydFlv~~Gwi 555 (557)
=+..|..|+.+++.|..+......++.++...+++ |.. ..+..+..||-..|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999999877777899998887764 554 3588999999999986
No 143
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.19 E-value=65 Score=27.79 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=41.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 499 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 499 C~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345678888877665432 34568888888888999999999999999999984
No 144
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=25.12 E-value=66 Score=31.25 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k-~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.+...++|.|.+|+.+.-+-- . .+.++.++.-..+.+|...+.++.+=|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~~----~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLFH----QQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHS----CSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 4555678999999988764331 3 2467777877788999999999999999999984
No 145
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.11 E-value=1.4e+02 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.632 Sum_probs=25.7
Q ss_pred cCCcccccccccc-CCceeEEcCCCCCcccchhhhhc-ccc
Q 008687 80 RALYHCNYCNKDI-TGKIRIKCAVCPDFDLCIECFSV-GVE 118 (557)
Q Consensus 80 ~~~~~Cd~C~~di-~~~~ri~C~~C~d~dLC~~CF~~-G~e 118 (557)
...+.|++|...= .. .--.|..|. ..+|..|+.. ...
T Consensus 28 ~~~v~C~~C~~~~~~~-A~ksCl~C~-~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQD-AVKTCVTCE-VSYCDECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCB-CCEEETTTT-EEECHHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCC-CeeEccCcc-chhhhhhhHhhcCC
Confidence 3457899997532 22 456899997 5599999985 443
No 146
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=24.95 E-value=27 Score=28.17 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCchHHHH
Q 008687 400 QDLKEARAAGCRTSAEAD 417 (557)
Q Consensus 400 ~eLqeyR~~Gi~tl~e~~ 417 (557)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 348899999999999875
No 147
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.59 E-value=49 Score=27.65 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=36.7
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 008687 501 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 501 ~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 556 (557)
..+|.|..+..|+-+. ..|.++..+....+. +..+-+.++.|-|+++|||.
T Consensus 30 ~~~LT~~e~~VL~~L~-----~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIW-----SLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp -CCCCCSCSHHHHHHH-----HHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 3578888888876443 234566666665555 45788999999999999984
No 148
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.49 E-value=78 Score=27.99 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 495 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 495 Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
-.+....++|.|..|..+..+. ..++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 42 ~~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 42 IDHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 3344567789999887665432 135668888888888999999999999999999984
No 149
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.41 E-value=26 Score=29.75 Aligned_cols=32 Identities=25% Similarity=0.808 Sum_probs=19.4
Q ss_pred cccccccccc--CCceeEEcCCCCC-cc---cchhhhhc
Q 008687 83 YHCNYCNKDI--TGKIRIKCAVCPD-FD---LCIECFSV 115 (557)
Q Consensus 83 ~~Cd~C~~di--~~~~ri~C~~C~d-~d---LC~~CF~~ 115 (557)
..|-.|+..+ .+ .+++|..|.. |. +|++|-..
T Consensus 33 ~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-GHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CBCSSSCSBEEEET-TEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccCccCCCcceecC-CEEECccccchhhccccCcchhhH
Confidence 4677777665 33 4666777753 32 57777543
No 150
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.42 E-value=49 Score=34.06 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.2
Q ss_pred CCccccccccccC--CceeEEcCCCCCcccchhhhhccc
Q 008687 81 ALYHCNYCNKDIT--GKIRIKCAVCPDFDLCIECFSVGV 117 (557)
Q Consensus 81 ~~~~Cd~C~~di~--~~~ri~C~~C~d~dLC~~CF~~G~ 117 (557)
....|..|+..+. ...+++|..|. +..|..|.....
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~-~~~h~~C~~~~~ 393 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCR-APAHKECLGRVP 393 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTC-CEECGGGGGGSC
T ss_pred CCCCCccccchhceeCCCCCCCCCCc-CccchhhhhhCC
Confidence 3468999998764 23789999996 889999988643
No 151
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.41 E-value=95 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCCHHHhhhhh-----ccCchhHHHHHHHHHHCCCCC
Q 008687 524 NVNNKADAHHLF-----KIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 524 g~lkk~dA~~l~-----kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+.++..+....+ .+...-+.+..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 678888888878 789999999999999999974
No 152
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.97 E-value=1e+02 Score=25.92 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=35.8
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 502 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 502 lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 35556665544322 3456 8888877788899999999999999999984
No 153
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.67 E-value=1.1e+02 Score=23.69 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 008687 503 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 503 rL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 556 (557)
+|.|..+..|+-+ ..+|.++..+....+. +..+-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L-----~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVI-----WKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHH-----HTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHH-----HcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 4555555554422 1356677766666654 56889999999999999984
No 154
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=21.61 E-value=1.3e+02 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCCCCchhHHHHHHHHHHhC--CCChHHHHHH--hCCCCHHHHHHHHHhh
Q 008687 140 CPDWNADDEILLLEGIEMYG--LGNWAEIAEH--VGTKTKELCIEHYTNV 185 (557)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G--~gnW~~Ia~~--vgtkt~~ec~~hy~~~ 185 (557)
..+||..|-..|+.++..|| .+.|++|+.- +..|+.+..+.-|..+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 46799999999999999999 5789999875 3468888887666544
No 155
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.53 E-value=29 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.592 Sum_probs=16.8
Q ss_pred CcCCccccccccc--cCCceeEEcCCCC
Q 008687 79 KRALYHCNYCNKD--ITGKIRIKCAVCP 104 (557)
Q Consensus 79 ~~~~~~Cd~C~~d--i~~~~ri~C~~C~ 104 (557)
....|.|..|+.. +...--++|..|.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCC
Confidence 4678999999987 4322334555554
No 156
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.16 E-value=94 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=29.3
Q ss_pred HhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 521 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 521 ~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
+..| ..+.+.-.-+.+....++++.+||.++|+|.
T Consensus 17 i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 17 CKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 3456 7777777778899999999999999999984
No 157
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.13 E-value=1.2e+02 Score=29.42 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 496 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 496 k~LC~~lrL~P~~YL~iK~~Li~E~~k~g-~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
..+...++|.|..|..+..+. ..+| .++.++.-..+.++..-+.++.|=|.++|||.
T Consensus 148 ~~~~~~~gLt~~q~~vL~~L~----~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 148 NIIKKHLTLSFVEFTILAIIT----SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH----TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHhhCCCCHHHHHHHHHHH----hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 556779999999998776542 2333 58888888888999999999999999999984
No 158
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.79 E-value=1e+02 Score=25.61 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=36.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 008687 502 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 502 lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 556 (557)
.+|.|..|..|.-+- ..|.++..+....+. ++.+-+.++.+=|+++|||.
T Consensus 6 ~~Lt~~q~~vL~~L~-----~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 6 VEISMAEWDVMNIIW-----DKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp CCCCHHHHHHHHHHH-----HSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 467788887775332 345566665555554 57999999999999999984
No 159
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.61 E-value=75 Score=27.09 Aligned_cols=52 Identities=6% Similarity=0.035 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 008687 504 LAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 555 (557)
Q Consensus 504 L~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 555 (557)
+.+..|-.+++.|..-+..+|.++.++++.++.+--.-+-.|.+||=+.||.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4566777777777655557899999999999975544455799999998874
No 160
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=20.42 E-value=1.2e+02 Score=25.30 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.4
Q ss_pred hCCCchHHHHHHHHHHHHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 008687 502 IRLAPPLYLRMQEVMSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 556 (557)
Q Consensus 502 lrL~P~~YL~iK~~Li~E~~-k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 556 (557)
.+|.|..|-.+..+...+.. -+|.++..+..+.+-++..-+.++.+-|.+.|||.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 57889888887766643333 45678999988889999999999999999999974
No 161
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=20.19 E-value=1.2e+02 Score=24.28 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=39.5
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 008687 499 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 555 (557)
Q Consensus 499 C~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 555 (557)
+..+.|....|..+..++- ..-.++.++..+.-..+.++..-+.++.+-|.+.|||
T Consensus 5 ~~k~~l~~~~~~iL~~l~~-~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 5 RIKLLFKEKALEILMTIYY-ESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHSCHHHHHHHHHHHH-HHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCchhHHHHHHHHHH-ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 3455666666665554432 1112224777888888899999999999999999998
Done!