Query 008688
Match_columns 557
No_of_seqs 417 out of 1614
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 8.3E-20 1.8E-24 159.8 10.0 99 270-396 10-109 (109)
2 PRK11493 sseA 3-mercaptopyruva 99.8 7.3E-20 1.6E-24 186.1 10.2 215 160-402 6-280 (281)
3 PLN02723 3-mercaptopyruvate su 99.8 8.7E-20 1.9E-24 189.3 10.9 216 160-402 23-318 (320)
4 COG2897 SseA Rhodanese-related 99.8 2E-19 4.3E-24 184.3 10.0 215 159-402 11-283 (285)
5 cd01518 RHOD_YceA Member of th 99.8 3.1E-19 6.8E-24 153.9 9.2 98 271-393 3-100 (101)
6 PLN02160 thiosulfate sulfurtra 99.8 1E-18 2.2E-23 160.7 11.1 115 270-404 15-131 (136)
7 cd01527 RHOD_YgaP Member of th 99.8 1.3E-18 2.7E-23 149.1 9.9 97 271-399 3-99 (99)
8 cd01534 4RHOD_Repeat_3 Member 99.8 9.3E-19 2E-23 149.6 9.0 94 272-394 1-95 (95)
9 PRK09629 bifunctional thiosulf 99.8 9.3E-19 2E-23 195.7 11.0 217 160-403 10-273 (610)
10 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.4E-18 3.1E-23 154.1 9.6 110 272-396 2-122 (122)
11 cd01523 RHOD_Lact_B Member of 99.8 1.9E-18 4.2E-23 148.5 9.8 99 272-393 1-99 (100)
12 cd01519 RHOD_HSP67B2 Member of 99.8 1E-18 2.3E-23 150.7 7.8 104 273-393 2-105 (106)
13 PRK00162 glpE thiosulfate sulf 99.8 1.9E-18 4.1E-23 151.0 9.4 101 270-401 5-105 (108)
14 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.8E-18 4E-23 152.1 8.0 107 272-394 1-118 (118)
15 cd01521 RHOD_PspE2 Member of t 99.7 6.4E-18 1.4E-22 148.5 10.3 101 269-399 7-110 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 6E-18 1.3E-22 151.4 8.9 111 269-399 7-118 (122)
17 cd01525 RHOD_Kc Member of the 99.7 1.1E-17 2.5E-22 144.2 9.5 100 272-393 1-104 (105)
18 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.3E-17 2.9E-22 157.8 10.6 110 270-399 36-162 (162)
19 cd01528 RHOD_2 Member of the R 99.7 2E-17 4.3E-22 142.6 9.9 96 272-394 2-98 (101)
20 KOG1530 Rhodanese-related sulf 99.7 1.3E-17 2.9E-22 152.1 9.0 117 266-400 19-135 (136)
21 cd01520 RHOD_YbbB Member of th 99.7 2.5E-17 5.3E-22 149.0 10.7 106 272-394 1-126 (128)
22 PRK11493 sseA 3-mercaptopyruva 99.7 1.5E-17 3.3E-22 169.1 10.0 119 271-404 6-138 (281)
23 PF00581 Rhodanese: Rhodanese- 99.7 2.4E-17 5.1E-22 141.6 9.5 108 273-395 1-113 (113)
24 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.9E-17 4.1E-22 140.2 8.7 92 272-393 2-95 (96)
25 smart00450 RHOD Rhodanese Homo 99.7 1.7E-17 3.8E-22 137.9 8.3 99 284-398 2-100 (100)
26 cd01447 Polysulfide_ST Polysul 99.7 3.1E-17 6.6E-22 140.3 8.5 102 272-396 1-103 (103)
27 cd01445 TST_Repeats Thiosulfat 99.7 4.2E-17 9E-22 150.4 9.0 108 272-393 1-137 (138)
28 PLN02723 3-mercaptopyruvate su 99.7 4.5E-17 9.8E-22 169.1 10.3 118 271-403 23-153 (320)
29 cd01535 4RHOD_Repeat_4 Member 99.7 4.6E-17 1E-21 151.4 9.1 98 277-404 2-99 (145)
30 PRK07411 hypothetical protein; 99.7 3.5E-17 7.5E-22 174.4 9.3 182 189-399 176-386 (390)
31 PRK07878 molybdopterin biosynt 99.7 5.7E-17 1.2E-21 172.7 10.0 180 188-398 183-387 (392)
32 PRK08762 molybdopterin biosynt 99.7 9.8E-17 2.1E-21 169.8 11.2 107 270-406 3-109 (376)
33 cd01524 RHOD_Pyr_redox Member 99.7 9.3E-17 2E-21 135.9 8.5 89 272-393 1-89 (90)
34 PRK09629 bifunctional thiosulf 99.7 8.9E-17 1.9E-21 179.9 10.7 120 270-404 9-132 (610)
35 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.3E-16 2.9E-21 143.7 9.4 99 271-393 3-120 (121)
36 cd01522 RHOD_1 Member of the R 99.7 9.5E-17 2.1E-21 143.2 7.9 103 272-394 1-104 (117)
37 cd01529 4RHOD_Repeats Member o 99.7 1.4E-16 3E-21 136.2 8.5 87 284-394 10-96 (96)
38 COG0607 PspE Rhodanese-related 99.7 1.8E-16 3.9E-21 136.6 8.9 96 278-401 12-108 (110)
39 cd01532 4RHOD_Repeat_1 Member 99.7 1.6E-16 3.5E-21 135.6 7.6 84 283-394 7-92 (92)
40 cd01531 Acr2p Eukaryotic arsen 99.6 5.9E-16 1.3E-20 136.4 8.1 100 271-395 3-112 (113)
41 KOG2017 Molybdopterin synthase 99.6 1.8E-16 3.8E-21 164.2 5.0 184 183-395 196-419 (427)
42 COG2897 SseA Rhodanese-related 99.6 1E-15 2.2E-20 157.1 10.1 121 271-405 12-142 (285)
43 cd00158 RHOD Rhodanese Homolog 99.6 2.1E-15 4.4E-20 124.3 7.4 88 277-393 2-89 (89)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 2.4E-15 5.2E-20 132.7 8.2 98 271-393 3-112 (113)
45 PRK01415 hypothetical protein; 99.6 4.1E-15 8.8E-20 150.0 10.2 101 271-396 113-213 (247)
46 TIGR02981 phageshock_pspE phag 99.6 3.7E-15 8.1E-20 131.0 8.5 81 285-394 17-97 (101)
47 PRK05597 molybdopterin biosynt 99.6 7.7E-16 1.7E-20 162.3 4.9 167 189-394 166-354 (355)
48 PRK05320 rhodanese superfamily 99.6 1E-14 2.2E-19 147.9 10.4 101 270-394 110-215 (257)
49 PRK10287 thiosulfate:cyanide s 99.5 1.1E-14 2.4E-19 128.8 8.0 81 285-394 19-99 (104)
50 PRK00142 putative rhodanese-re 99.5 2.9E-14 6.2E-19 148.4 10.2 100 270-394 112-211 (314)
51 PRK05600 thiamine biosynthesis 99.5 1.2E-14 2.6E-19 154.3 6.6 170 189-390 182-369 (370)
52 PRK11784 tRNA 2-selenouridine 99.4 3.5E-13 7.5E-18 142.0 10.8 113 273-401 4-135 (345)
53 cd01446 DSP_MapKP N-terminal r 99.4 6.6E-13 1.4E-17 120.1 10.3 106 271-394 1-126 (132)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 4.3E-13 9.3E-18 139.5 8.5 104 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.1 3.7E-10 8.1E-15 115.3 9.0 119 271-404 6-139 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 6.4E-10 1.4E-14 122.0 7.5 73 285-387 406-482 (482)
57 COG1054 Predicted sulfurtransf 98.9 1.9E-09 4.2E-14 110.8 5.3 99 271-394 114-212 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.8 1.5E-08 3.2E-13 103.8 9.5 94 285-394 171-275 (286)
59 KOG3772 M-phase inducer phosph 98.5 2.6E-07 5.7E-12 96.4 6.6 104 270-396 156-277 (325)
60 COG5105 MIH1 Mitotic inducer, 97.2 0.00061 1.3E-08 71.4 6.0 99 269-394 241-357 (427)
61 COG2603 Predicted ATPase [Gene 94.3 0.066 1.4E-06 56.1 5.3 102 276-393 7-127 (334)
62 TIGR01244 conserved hypothetic 94.2 0.15 3.2E-06 47.2 7.0 111 270-401 13-130 (135)
63 PF04273 DUF442: Putative phos 94.2 0.085 1.8E-06 47.6 5.2 88 269-373 12-105 (110)
64 PF13350 Y_phosphatase3: Tyros 88.9 1.8 3.9E-05 40.8 7.8 98 269-380 27-152 (164)
65 KOG1093 Predicted protein kina 88.4 0.2 4.3E-06 56.6 1.2 96 271-392 623-718 (725)
66 PF05237 MoeZ_MoeB: MoeZ/MoeB 88.3 0.064 1.4E-06 45.7 -2.1 46 189-237 3-48 (84)
67 cd00127 DSPc Dual specificity 83.1 2.5 5.3E-05 37.8 5.3 27 353-379 80-109 (139)
68 PF14159 CAAD: CAAD domains of 82.9 2.8 6.2E-05 36.7 5.4 38 446-483 48-85 (90)
69 PRK00142 putative rhodanese-re 81.8 0.18 3.9E-06 53.2 -2.9 53 268-330 12-64 (314)
70 PF05706 CDKN3: Cyclin-depende 79.7 4.8 0.0001 39.3 6.3 80 289-378 75-159 (168)
71 PF11127 DUF2892: Protein of u 79.6 3.9 8.4E-05 33.1 4.8 45 428-476 14-58 (66)
72 cd01445 TST_Repeats Thiosulfat 77.7 3.2 6.9E-05 38.5 4.3 71 189-269 53-124 (138)
73 PRK07688 thiamine/molybdopteri 75.4 0.45 9.7E-06 50.7 -2.3 115 189-307 164-318 (339)
74 KOG1717 Dual specificity phosp 73.2 3 6.6E-05 43.6 3.1 31 272-307 6-36 (343)
75 PLN02777 photosystem I P subun 72.4 4 8.7E-05 39.7 3.5 39 446-484 123-161 (167)
76 smart00195 DSPc Dual specifici 65.5 17 0.00037 32.7 6.0 28 352-379 76-106 (138)
77 PLN02806 complex I subunit 63.6 8.1 0.00018 33.3 3.2 55 427-487 5-68 (81)
78 PF00782 DSPc: Dual specificit 58.2 19 0.0004 32.1 4.9 28 353-380 72-102 (133)
79 PF01451 LMWPc: Low molecular 56.9 10 0.00022 34.4 3.0 36 357-392 1-41 (138)
80 KOG3636 Uncharacterized conser 56.5 37 0.0008 38.2 7.5 91 287-393 327-427 (669)
81 PLN02727 NAD kinase 54.0 23 0.00049 42.9 5.9 92 270-375 267-364 (986)
82 PF09992 DUF2233: Predicted pe 51.9 18 0.00039 34.0 3.9 41 353-393 99-144 (170)
83 KOG0781 Signal recognition par 51.5 40 0.00086 38.3 6.9 106 72-189 271-385 (587)
84 PF01442 Apolipoprotein: Apoli 50.3 2.5 5.4E-05 39.5 -2.2 17 98-114 52-68 (202)
85 TIGR03167 tRNA_sel_U_synt tRNA 49.1 31 0.00067 36.6 5.5 33 271-304 137-172 (311)
86 PRK08223 hypothetical protein; 48.1 10 0.00022 40.0 1.6 16 183-198 160-175 (287)
87 smart00226 LMWPc Low molecular 44.9 24 0.00052 32.1 3.4 36 357-392 1-37 (140)
88 PRK08762 molybdopterin biosynt 40.6 35 0.00076 36.7 4.4 43 353-396 134-176 (376)
89 PF05957 DUF883: Bacterial pro 39.3 43 0.00093 28.9 4.0 48 70-117 6-53 (94)
90 TIGR02689 ars_reduc_gluta arse 33.0 72 0.0016 28.9 4.5 35 356-390 2-37 (126)
91 PF03853 YjeF_N: YjeF-related 31.9 78 0.0017 30.2 4.8 51 352-403 23-88 (169)
92 COG2453 CDC14 Predicted protei 30.6 51 0.0011 31.8 3.3 27 353-379 104-133 (180)
93 PRK10126 tyrosine phosphatase; 30.5 64 0.0014 30.1 3.9 37 355-392 3-40 (147)
94 PF05957 DUF883: Bacterial pro 30.2 58 0.0013 28.1 3.3 59 77-135 6-64 (94)
95 COG2519 GCD14 tRNA(1-methylade 29.5 74 0.0016 33.2 4.4 33 352-384 186-218 (256)
96 cd00115 LMWPc Substituted upda 28.4 53 0.0011 30.0 2.9 37 356-392 2-40 (141)
97 COG3453 Uncharacterized protei 27.2 1.1E+02 0.0023 28.9 4.6 88 269-373 13-106 (130)
98 cd01448 TST_Repeat_1 Thiosulfa 27.0 39 0.00084 29.7 1.7 61 176-245 17-84 (122)
99 PRK11391 etp phosphotyrosine-p 26.7 84 0.0018 29.3 4.0 37 355-392 3-40 (144)
100 PRK00103 rRNA large subunit me 26.0 1.6E+02 0.0034 28.4 5.7 62 351-412 64-135 (157)
101 PRK13530 arsenate reductase; P 25.2 1.1E+02 0.0025 28.1 4.5 35 355-389 4-39 (133)
102 PRK12361 hypothetical protein; 25.2 1.5E+02 0.0032 33.6 6.3 17 353-369 174-191 (547)
103 PTZ00242 protein tyrosine phos 24.7 3.8E+02 0.0083 25.6 8.1 19 352-370 96-115 (166)
104 cd01449 TST_Repeat_2 Thiosulfa 24.4 1.2E+02 0.0026 26.2 4.3 64 189-268 40-103 (118)
105 PTZ00393 protein tyrosine phos 24.0 1.5E+02 0.0032 30.8 5.4 27 353-379 169-197 (241)
106 PF02590 SPOUT_MTase: Predicte 23.0 2.4E+02 0.0052 27.1 6.3 64 349-412 62-135 (155)
107 PF03162 Y_phosphatase2: Tyros 23.0 1.1E+02 0.0024 29.4 4.1 38 353-394 90-129 (164)
108 PLN03050 pyridoxine (pyridoxam 22.2 1.3E+02 0.0027 31.0 4.5 31 354-385 60-93 (246)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.81 E-value=8.3e-20 Score=159.75 Aligned_cols=99 Identities=26% Similarity=0.220 Sum_probs=83.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
..++++++.++++.+.+.+|||||++.||..+|||||+ |+|+.++......+ +
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------A----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------C-----
Confidence 46999999999865446899999999999999999999 99987654332211 1
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCc-eEEecccHHHHHHcC
Q 008688 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfkn-V~vLdGG~~aWkaaG 396 (557)
.+++++||+||++|.||..+++.|+.+||++ +++|+||+.+|+.+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1367899999999999999999999999998 999999999999876
No 2
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=7.3e-20 Score=186.07 Aligned_cols=215 Identities=18% Similarity=0.178 Sum_probs=145.9
Q ss_pred chhhhhhhhhHHhhhhhhccCcc----------eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHH
Q 008688 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE 229 (557)
-|..++|++++..-+-.|.|.|+ .-.|.-||++..+..+..+.... .+ +...... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~----~~----~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDH----TS----PLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCC----CC----CCCCCCC-CHHHHH
Confidence 36778888888665567888886 24567789998776555432111 11 1111111 123456
Q ss_pred HHHHhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHhCCCC---------------------C-----------------c
Q 008688 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------D 271 (557)
Q Consensus 230 ~l~~vlGf~~~~PVv~~~v~vg~~a~l~~~~~l~~~~gy~---------------------g-----------------~ 271 (557)
.+.+.+|+++++|||+|.-..+.. +. ..||.+.+.||. . .
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~~-a~-~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLFS-AP-RAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAV 154 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCch-HH-HHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccce
Confidence 667778999999998754221111 11 123333332221 0 0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh-----------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHH
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~-----------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL 340 (557)
.+.+++...+ ++++.+|||+|+++||. .||||||+ |+|+.++... ..+++++++++++
T Consensus 155 ~~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~ 223 (281)
T PRK11493 155 VRLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIF 223 (281)
T ss_pred ecHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHH
Confidence 1223344344 23468999999999994 69999999 8997776532 2356678888888
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCCcccc
Q 008688 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 341 ~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka-aGLPV~~~ 402 (557)
.+.|++ ++++||+||++|.||..+++.|+.+||+++++|+|||.+|.. .++|++++
T Consensus 224 ~~~g~~------~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 FGRGVS------FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 877774 788999999999999999999999999999999999999998 79999864
No 3
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=8.7e-20 Score=189.30 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=148.8
Q ss_pred chhhhhhhhhHHhhhhhhccCc---------ceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHH
Q 008688 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~ 230 (557)
-++.|||++.+..-+-.|.|.+ +...|.-||++..+.-++.+....... ....+. ....|+.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----~~~~lp-----~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----LPHMLP-----SEEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----cCCCCC-----CHHHHHH
Confidence 4667777777654344555653 124577899998888776653322111 111111 1244677
Q ss_pred HHHhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHhCCCC---------------------C-------------------
Q 008688 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G------------------- 270 (557)
Q Consensus 231 l~~vlGf~~~~PVv~~~v~vg~~a~l~~~~~l~~~~gy~---------------------g------------------- 270 (557)
+.+.+|+.++++||+|.-..+.. +. -+||.+++.||. +
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~g~~~-a~-r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGKGIFS-AA-RVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKV 171 (320)
T ss_pred HHHHcCCCCCCEEEEEcCCCcch-HH-HHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccc
Confidence 77888999999999753221111 11 134443332221 0
Q ss_pred -------------------ccCHHHHHHHHhCCCCcEEEEcCChhhH-----------hhcCCccccccccccccccCcc
Q 008688 271 -------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP 320 (557)
Q Consensus 271 -------------------~ISp~ea~elLa~~~~avLIDVRs~~Ef-----------~~GHIPGAi~a~~~~~~nIPls 320 (557)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~ 242 (320)
T PLN02723 172 YQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFP 242 (320)
T ss_pred cccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHH
Confidence 035567777773 456889999999998 569999999 89987
Q ss_pred cccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCCc
Q 008688 321 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRI 399 (557)
Q Consensus 321 eL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka-aGLPV 399 (557)
.+.... ..+++++++++++.++|++ ++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|+
T Consensus 243 ~~~~~~-~~~~~~~el~~~~~~~gi~------~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 243 QMLDSS-QTLLPAEELKKRFEQEGIS------LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HhcCCC-CCCCCHHHHHHHHHhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 654332 3467788999988888874 789999999999999999999999999999999999999987 47888
Q ss_pred ccc
Q 008688 400 KEL 402 (557)
Q Consensus 400 ~~~ 402 (557)
+++
T Consensus 316 ~~~ 318 (320)
T PLN02723 316 ATS 318 (320)
T ss_pred cCC
Confidence 764
No 4
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2e-19 Score=184.29 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=158.8
Q ss_pred cchhhhhhhhhHH-----hhhhhhccCcc--eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHH
Q 008688 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (557)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l 231 (557)
--|+.|||.+++. .++-++....+ -..|.-||++..+..++...++-.....+ ++-. -..++.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~----~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPH----MLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCC----CCCC-----HHHHHHH
Confidence 4578899998875 23333333333 36788899999999998877766332112 1111 2346677
Q ss_pred HHhcCcCCCCCeeehhhhHhHHHHHHH--HHHHHHhCCCC--------------------------------------Cc
Q 008688 232 ERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGYS--------------------------------------GD 271 (557)
Q Consensus 232 ~~vlGf~~~~PVv~~~v~vg~~a~l~~--~~~l~~~~gy~--------------------------------------g~ 271 (557)
.+.+||..+++||+|.- ...+++ +||++++.|+. ..
T Consensus 82 ~~~~GI~~d~tVVvYdd----~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTVVVYDD----GGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEEEEECC----CCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 78899999999986443 222233 57776664331 12
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh----------cCCccccccccccccccCcccccchhhhhhcCchhhHHHHH
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~----------GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~ 341 (557)
.+..+....+. .+..+|||+|++++|+. ||||||+ |+|+..+.. .+.+++.+++++.++.
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 34455666663 46788999999999987 9999999 999888776 4567777788888887
Q ss_pred HHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCCcccc
Q 008688 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka-aGLPV~~~ 402 (557)
..|++ ++++||+||++|.||+..+..|+.+|++++++|+|+|.+|.+ .+.|++++
T Consensus 228 ~~gi~------~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGID------PDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCCC------CCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 88874 899999999999999999999999999988999999999997 56688774
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.79 E-value=3.1e-19 Score=153.87 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=81.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
.|+++++.+++. +++++|||||++.||..+|||||+ |+|+.++...... +...+ .
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~~~---------~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDENL---------D 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHhhh---------h
Confidence 589999999985 567899999999999999999999 9998776432111 11100 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
.+++++|||||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2478999999999999999999999999999999999999996
No 6
>PLN02160 thiosulfate sulfurtransferase
Probab=99.78 E-value=1e-18 Score=160.74 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=89.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccc--cccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGA--i~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~ 347 (557)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. .. .+++++++.++. .
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~-~l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QG-RVKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-cc-ccCCHHHHHHHH-h-----
Confidence 46899999999853 468999999999999999999 7 788644321 11 122222222211 0
Q ss_pred hcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCc
Q 008688 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 348 Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
.++++++||+||++|.||..++..|...||++|++|.|||.+|+++|+|+++...
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 131 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEE 131 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccccc
Confidence 1257889999999999999999999999999999999999999999999988543
No 7
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.3e-18 Score=149.15 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
.|+++++.+++.. +.+|||+|++.||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 5899999999864 3899999999999999999999 899776653210 1
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCc
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.|+..++..|+++||+++++|+||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2478899999999999999999999999999999999999999999985
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=9.3e-19 Score=149.58 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
|+++++.++++++ ++.+|||||++.||..+|||||+ |+|+.++.....++.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999999654 36789999999999999999999 999766543222111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
..++++||+||.+|.||..+++.|+.+||+ |++|+||+.+|+.
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 125789999999999999999999999999 9999999999963
No 9
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.77 E-value=9.3e-19 Score=195.74 Aligned_cols=217 Identities=17% Similarity=0.093 Sum_probs=154.2
Q ss_pred chhhhhhhhhHHhhhhhhccCcceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC
Q 008688 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~ 239 (557)
-++.++|++.+..-+-.|.|.|+.--|.-||++..+..++...........+ .+.. ...++.+.+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCCC-----HHHHHHHHHHcCCCC
Confidence 3778888888866566788888877888899998776665443221111111 1111 223556666789999
Q ss_pred CCCeeehhhhHhHHHHHHHHHHHHHhCCCC--------------------------------------CccCHHHHHHHH
Q 008688 240 NDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLSPKSTLELL 281 (557)
Q Consensus 240 ~~PVv~~~v~vg~~a~l~~~~~l~~~~gy~--------------------------------------g~ISp~ea~elL 281 (557)
+++||+|.-..+.. +.. +||.+++.|+. ..++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~-A~R-~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGGW-AGR-FIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCch-HHH-HHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 99999653211111 111 34443332220 024667888887
Q ss_pred hCCCCcEEEEcCChhhHh--------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 008688 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 282 a~~~~avLIDVRs~~Ef~--------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~k 353 (557)
. +++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++++.++|++ +
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi~------~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGIT------P 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCCC------C
Confidence 4 4678999999999994 79999999 88876543222 2356778899999888874 7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH-cCCCccccC
Q 008688 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKELK 403 (557)
Q Consensus 354 d~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka-aGLPV~~~~ 403 (557)
+++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++..
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 89999999999999999999999999999999999999987 589998744
No 10
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.4e-18 Score=154.15 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhHhhcCCccccccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~-------~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llk~p~~Le~lL~ 341 (557)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++++++++.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999995 357899999999 999999999999 8887766432 2335566677777776
Q ss_pred HHHHhhhcccCCCCeEEEEeCC-ChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008688 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~s-G~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaG 396 (557)
..++ +++++|||||++ |.++..+++.|+.+||++|++|+||+.+|+++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6655 489999999999 589999999999999999999999999999875
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.76 E-value=1.9e-18 Score=148.51 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=80.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~ 351 (557)
|+++++.++++++++++|||||++.||..+|||||+ |+|+.++...... ...+.+ ..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~------~~~~~~--------~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLE------IEEDIL--------DQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHH------hhHHHH--------hhC
Confidence 688999999976567899999999999999999999 9998766432100 000000 123
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
+++++||+||.+|.||..++..|+++||+ +++|+||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 57899999999999999999999999998 999999999996
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1e-18 Score=150.67 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=84.2
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 008688 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~ 352 (557)
|++++.++++.+++.+|||+|++.||..||||||+ |+|+.++... ...+++.+++.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888842467999999999999999999999 8998776432 12233455554443333 4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
++++||+||.+|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 78999999999999999999999999999999999999996
No 13
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=1.9e-18 Score=150.95 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=87.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
..++++++.++++ +.+.++||+|++.||..+|||||+ |+|+..+.....
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~---------------------- 53 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMR---------------------- 53 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHH----------------------
Confidence 4689999999985 346899999999999999999999 888755432211
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccc
Q 008688 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~ 401 (557)
.+++++++++||.+|.++..++..|+..||+++++|+||+.+|+..++|+++
T Consensus 54 ~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 54 QADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred hcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1247889999999999999999999999999999999999999999999876
No 14
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=1.8e-18 Score=152.12 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh-----------cCCccccccccccccccCcccccchhhhhhcCchhhHHHH
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~-----------GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL 340 (557)
++++++.++++ +++++|||+|++.||.. ||||||+ |+|+.++.... ..+++++++++.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 45689999999999987 9999999 89887655432 2455667777777
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 341 ~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
..+++ +++++||+||++|.||.++++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 76665 3789999999999999999999999999999999999999963
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.75 E-value=6.4e-18 Score=148.48 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 008688 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~ 347 (557)
...++++++.++++++ ++.+|||+|++.+|..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3579999999999754 46899999999999999999999 888766432110
Q ss_pred hcccCCCCeEEEEeCCCh--HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCc
Q 008688 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 348 Lk~~~kd~~VIVyC~sG~--RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV 399 (557)
..++++++||+||.+|. ++..+++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 01357899999999884 899999999999995 999999999999999985
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=6e-18 Score=151.43 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=88.8
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 008688 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~L 348 (557)
...|+++++.++++++++++|||+|++.||..+|||||+ |+|+.++......+.+ + .+...+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~~---- 68 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPLD---- 68 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhcccc----
Confidence 357999999999965567899999999999999999999 9998776543322110 0 011111
Q ss_pred cccCCCCeEEEEeCCChHHHHHHHHHHHhcC-CceEEecccHHHHHHcCCCc
Q 008688 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~RSa~AA~~L~~lGf-knV~vLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.||..+++.|+.+|| +++++|+||+.+|+....|.
T Consensus 69 --~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 --NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred --cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 35789999999999999999999999999 79999999999999876554
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.73 E-value=1.1e-17 Score=144.20 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccc---hhhhhhcCchhhHHHHHHHHHhh
Q 008688 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 272 ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~---~l~~Llk~p~~Le~lL~alGI~~ 347 (557)
||++++.+++.++ ++++|||+|++.||..||||||+ |+|+..+.. .... +++...+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~---------- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLE---------- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHH----------
Confidence 6899999999643 36899999999999999999999 888765432 1111 11111111
Q ss_pred hcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 348 Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
..++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 62 ---~~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 ---NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ---hhcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 0247899999999999999999999999999999999999996
No 18
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.3e-17 Score=157.77 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=84.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChh----hHhhc---------CCccccccccccccccCcc---cccchhhhhhcCc
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYLP---EVGGSVKKLLRGG 333 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~----Ef~~G---------HIPGAi~a~~~~~~nIPls---eL~~~l~~Llk~p 333 (557)
..|+++++.+++. +++.+|||||++. ||..| |||||+ |+|+. ++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4699999999995 4568999999876 46544 999999 77642 222210 0
Q ss_pred hhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCc
Q 008688 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 334 ~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV 399 (557)
..+.+.+.+++. .+++++||+||++|. +|..+++.|+++||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112333333332 248999999999997 8999999999999999999999999999999985
No 19
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.72 E-value=2e-17 Score=142.64 Aligned_cols=96 Identities=27% Similarity=0.398 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
|+++++.+++... .++++||+|++.||..+|||||+ |+|+.++......+ ..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~~ 54 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------DS 54 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------cc
Confidence 7899999999653 36899999999999999999999 99976654322111 01
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.+++++||+||++|.||..+++.|.++||+++++|+||+.+|+.
T Consensus 55 ~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 55 DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 13688999999999999999999999999999999999999975
No 20
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.3e-17 Score=152.06 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=95.7
Q ss_pred CCCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008688 266 GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 266 ~gy~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI 345 (557)
......++.++++++++ .++.++||||+|+||.+||||.++ |||+...... ..+++++|+++ .|.
T Consensus 19 ~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~ 83 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGS 83 (136)
T ss_pred cCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hcc
Confidence 34556789999999995 566999999999999999999999 9997544332 23456666654 343
Q ss_pred hhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCcc
Q 008688 346 RNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~ 400 (557)
. ..+.|+.|||+|++|.||..|...|..+||+||.+|.|||.+|...|+|..
T Consensus 84 ~---kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 S---KPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred c---CCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 2 234677999999999999999999999999999999999999999998864
No 21
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.5e-17 Score=149.00 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=80.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchh--hhhhcC--------------chh
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRG--------------GRE 335 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l--~~Llk~--------------p~~ 335 (557)
||++++.+++. ++.+|||||++.||..||||||+ |+|+....... ....++ +..
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68999999985 46899999999999999999999 89986432210 000000 022
Q ss_pred hHHHHHHH---HHhhhcccCCCCeEEEEeC-CChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 336 LDDTLTAA---VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 336 Le~lL~al---GI~~Lk~~~kd~~VIVyC~-sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
+++.+..+ ++ +++++||+||. +|.||.++++.|+.+|| +|++|+||+.+|+.
T Consensus 71 ~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 33333332 44 58999999997 68899999999999999 69999999999975
No 22
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.72 E-value=1.5e-17 Score=169.14 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=100.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC----------hhhHhhcCCccccccccccccccCcccccc---hhhhhhcCchhhH
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs----------~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~---~l~~Llk~p~~Le 337 (557)
.++++++.+++ ++++++|||+|+ +.+|+.||||||+ |+|+..+.. ....++++++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48999999999 456799999997 7899999999999 777654432 2234566678889
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCc
Q 008688 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 338 ~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
+++.++|++ ++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|+++|+|++...+
T Consensus 77 ~~~~~~Gi~------~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGVN------QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCCC------CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 999999885 8999999999877 467889999999999999999999999999999988644
No 23
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.72 E-value=2.4e-17 Score=141.61 Aligned_cols=108 Identities=29% Similarity=0.488 Sum_probs=80.7
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 008688 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~ 352 (557)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|+..+..... ......+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPDEP--SLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSSSS--BCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccccc--cccccccccccccccc----ccc
Confidence 689999999 6789999999999999999999999 888755411100 0001122222223332 245
Q ss_pred CCCeEEEEeCCChHHHHHHHH-----HHHhcCCceEEecccHHHHHHc
Q 008688 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~-----L~~lGfknV~vLdGG~~aWkaa 395 (557)
++++|||||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 788999999999988887777 8899999999999999999864
No 24
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.72 E-value=1.9e-17 Score=140.18 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=79.8
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh--cCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~--GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
|+++++.++++++.+++|||+|++.||.. +|||||+ ++|+.++.....
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~---------------------- 51 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG---------------------- 51 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh----------------------
Confidence 78999999986546799999999999999 9999999 899875543211
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
..+++++|||||++|.|+..+++.|+..||+++++|+||+.+|+
T Consensus 52 ~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 13578999999999999999999999999999999999999996
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.72 E-value=1.7e-17 Score=137.93 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=76.9
Q ss_pred CCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 008688 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~s 363 (557)
+++.+|||+|++.||..+|||||+ |+|+..+....... .. ..+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-DI-LEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-CH-HHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999999 88877654332110 00 01222222222 3578999999999
Q ss_pred ChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCC
Q 008688 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 364 G~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLP 398 (557)
|.++..+++.|+.+||+++++|+||+.+|+..|+|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998875
No 26
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.70 E-value=3.1e-17 Score=140.34 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=79.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhH-hhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef-~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~~~------ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHKPA------ 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---cccccC------
Confidence 57899999985 357899999999998 579999999 8887655321110 00 000011
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaG 396 (557)
++++++|||||.+|.|+..+++.|+.+||+++++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3578999999999999999999999999999999999999998765
No 27
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.70 E-value=4.2e-17 Score=150.43 Aligned_cols=108 Identities=23% Similarity=0.252 Sum_probs=90.0
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhHhh------------cCCccccccccccccccCccccc---ch
Q 008688 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVG---GS 325 (557)
Q Consensus 272 ISp~ea~elLa~---~~~avLIDVRs~--------~Ef~~------------GHIPGAi~a~~~~~~nIPlseL~---~~ 325 (557)
+|++++.+.+.+ +++.+|||+|.. .+|.. ||||||+ ++|+..+. ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999853 467999999987 89988 9999999 77755442 22
Q ss_pred hhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC---ChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 326 l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~s---G~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
...++++++++++.+.++||+ ++++||+||.+ |.++.+++++|+.+|+++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI~------~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCCC------CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 234566667899999999985 78999999986 779999999999999999999999999996
No 28
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.70 E-value=4.5e-17 Score=169.11 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC--------C-hhhHhhcCCccccccccccccccCcccccc---hhhhhhcCchhhHH
Q 008688 271 DLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDD 338 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVR--------s-~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~---~l~~Llk~p~~Le~ 338 (557)
.|+++++.+++. +++.+|||+| + ..+|..||||||+ ++|+..+.. ....++++++.|++
T Consensus 23 lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred eecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 689999999995 4689999996 3 3789999999999 777655433 23456677788999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccC
Q 008688 339 TLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 339 lL~alGI~~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~ 403 (557)
.+.++||. ++++|||||..|. .+.++++.|+.+||++|++|+||+.+|+.+|+|+++..
T Consensus 94 ~l~~~Gi~------~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 94 AVSALGIE------NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHcCCC------CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999985 7889999999886 56788999999999999999999999999999998753
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.70 E-value=4.6e-17 Score=151.42 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=81.1
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCe
Q 008688 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~ 356 (557)
+.+++.++.+++|||||++.+|+.+|||||+ ++|...+...+. . .+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~--------------~--------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALE--------------K--------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHH--------------h--------cCCCCC
Confidence 4556655556899999999999999999999 777544432211 1 236789
Q ss_pred EEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCc
Q 008688 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 357 VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+.+|+|++.+.+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987644
No 30
>PRK07411 hypothetical protein; Validated
Probab=99.69 E-value=3.5e-17 Score=174.41 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=125.7
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhHhHHHH--------H
Q 008688 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSAT--------L 256 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~--~~PVv~~~v~vg~~a~--------l 256 (557)
||||+|++|+..+ .+..|.. +| |++|.-+..+ ++++.|.++-++|+.+ ...++++..+...... +
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~-~g-vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAE-GG-VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCcc-CC-cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999986432 3445666 77 8999999998 7889999998888643 2334322111100000 0
Q ss_pred HH-----HHHHHH-----------hCCCCCccCHHHHHHHHhCCC-CcEEEEcCChhhHhhcCCccccccccccccccCc
Q 008688 257 WI-----FYWWWT-----------YGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (557)
Q Consensus 257 ~~-----~~~l~~-----------~~gy~g~ISp~ea~elLa~~~-~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPl 319 (557)
-+ -|=.+. .+.....|+++++.++++.+. +.+|||||++.||+.+|||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 00 000000 011224689999999986543 5799999999999999999999 9998
Q ss_pred ccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCc
Q 008688 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 320 seL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV 399 (557)
.++..... .+.+. ..+++++||+||++|.||..+++.|+++||++ +.|+||+.+|++...|.
T Consensus 325 ~~l~~~~~-----~~~l~------------~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEKVK------------ELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHHHh------------hcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 76643210 01111 12478899999999999999999999999985 68999999999877654
No 31
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.69 E-value=5.7e-17 Score=172.74 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=126.8
Q ss_pred ecccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhHhHHHH--------
Q 008688 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSAT-------- 255 (557)
Q Consensus 188 yG~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~--~~PVv~~~v~vg~~a~-------- 255 (557)
+|+|++|+.|+... .+..|.+ +| |++|.-+..+ ++++.|.++-++|+.. ...++.+..+......
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 259 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAE-GG-VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKDPS 259 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCcc-CC-ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeeccCCC
Confidence 58999999875332 3455666 67 8999999988 6888999998888643 2334322111100000
Q ss_pred HH-H----HHHHH-Hh-------CCCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccc
Q 008688 256 LW-I----FYWWW-TY-------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 322 (557)
Q Consensus 256 l~-~----~~~l~-~~-------~gy~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL 322 (557)
|- . -|-.+ .. ..-...|+++++.++++++++.+|||+|+++||..+|||||+ |+|+.++
T Consensus 260 C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~l 331 (392)
T PRK07878 260 TPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSEI 331 (392)
T ss_pred CCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHHh
Confidence 00 0 00000 00 001135899999999965556899999999999999999999 9998765
Q ss_pred cchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCC
Q 008688 323 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 323 ~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLP 398 (557)
.... .+ ..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 332 ~~~~--------~~------------~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 332 LSGE--------AL------------AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred cchh--------HH------------hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 4210 00 01357899999999999999999999999999999999999999987655
No 32
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.68 E-value=9.8e-17 Score=169.79 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=90.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
..|+++++.+++++ +.+|||+|++.||..||||||+ |+|+..+.....++ .
T Consensus 3 ~~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~----- 53 (376)
T PRK08762 3 REISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L----- 53 (376)
T ss_pred ceeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c-----
Confidence 36899999999853 5899999999999999999999 89976554322111 1
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCccc
Q 008688 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~~~ 406 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|++.|+|++......
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s 109 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLT 109 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCC
Confidence 14789999999999999999999999999999999999999999999998865433
No 33
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.68 E-value=9.3e-17 Score=135.95 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~ 351 (557)
++|+++.+++ .++.++||+|++++|..+|||||+ |+|+.++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 4788999988 346799999999999999999999 899765533211 12
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
+++++||+||.+|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 4678999999999999999999999999 9999999999996
No 34
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.68 E-value=8.9e-17 Score=179.91 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=101.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCccccc---chhhhhhcCchhhHHHHHHHHHh
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~---~~l~~Llk~p~~Le~lL~alGI~ 346 (557)
-.|+++++.++++ +++++|||+|++++|..||||||+ ++|+.... .....++++++++++.+.++|++
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3589999999995 567999999999999999999999 77654321 11234566778899999999984
Q ss_pred hhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCc
Q 008688 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 347 ~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
++++||+||++|. ++.+++|+|+.+||++|++|+||+.+|+.+|+|+++..+
T Consensus 80 ------~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 80 ------PDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred ------CCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 8999999999875 888999999999999999999999999999999987543
No 35
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.68 E-value=1.3e-16 Score=143.68 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCccccccccccccccCcc-cccchhhhhhcCchhhHHHHHHHH
Q 008688 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 271 ~ISp~ea~elLa~~-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPls-eL~~~l~~Llk~p~~Le~lL~alG 344 (557)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+........ ..++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~----------~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKP----------GVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhh----------cccc
Confidence 58999999999653 46899999999999999999999 99975 3332211000 0011
Q ss_pred HhhhcccCCCCeEEEEeC-CChHHHHHHHHHHHh------------cCCceEEecccHHHHH
Q 008688 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~-sG~RSa~AA~~L~~l------------GfknV~vLdGG~~aWk 393 (557)
.+++++|||||. +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 258899999997 999999999999985 9999999999999984
No 36
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.67 E-value=9.5e-17 Score=143.20 Aligned_cols=103 Identities=26% Similarity=0.337 Sum_probs=81.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh-hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~-~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
||++++.++++++++.++||||++.||+ .+|||||+ |+|+.++.... ++..+.. .+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~~-~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFLA-ELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHHH-HHHhh-------
Confidence 6899999999765679999999999999 99999999 88877654211 1111111 11111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.+++++||+||++|.||..+++.|+++||++++.|.||+.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 24789999999999999999999999999999999999999965
No 37
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.67 E-value=1.4e-16 Score=136.17 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=70.3
Q ss_pred CCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 008688 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~s 363 (557)
+++.+|||+|++.+|..+|||||+ |+|+.++.... ..++ .++ ..+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~-------~~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRS-------QELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCH-------HHHH----Hhh-----cCCCCCCEEEEeCC
Confidence 457899999999999999999999 88876543221 1111 111 12578999999999
Q ss_pred ChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 364 G~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
|.++..+++.|+.+||++|++|+||+.+|++
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 38
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=136.58 Aligned_cols=96 Identities=31% Similarity=0.493 Sum_probs=81.2
Q ss_pred HHHHhCCCCcEEEEcCChhhHhhcCCcc-ccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCe
Q 008688 278 LELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 278 ~elLa~~~~avLIDVRs~~Ef~~GHIPG-Ai~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~ 356 (557)
...+...++.+|||||++.||..+|||+ ++ |+|+.++........ .+++++
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~ 63 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDP 63 (110)
T ss_pred HHHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCe
Confidence 3334345689999999999999999999 88 999888765422110 147899
Q ss_pred EEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccc
Q 008688 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 357 VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~ 401 (557)
||+||++|.||..++..|+.+||++++++.||+.+|+..++|+..
T Consensus 64 ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 64 IVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999876
No 39
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.66 E-value=1.6e-16 Score=135.59 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeC
Q 008688 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (557)
Q Consensus 283 ~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~ 362 (557)
++++++|||+|++.||..+|||||+ |+|+..+...... .+ .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999999 8987654321000 01 135889999999
Q ss_pred CChH--HHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 363 sG~R--Sa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
+|.| |..+++.|+++||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999973
No 40
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.63 E-value=5.9e-16 Score=136.44 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=78.7
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 271 ~ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
.|+++++.+++..+ ++.+|||||++ ||..+|||||+ ++|+..+......+. ...+.
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~~----------~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQLV----------QLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHHH----------HHHhc----
Confidence 58999999998654 46789999999 99999999999 999877654332221 11221
Q ss_pred ccCCCCeEEEEeC-CChHHHHHHHHHHH--------hcCCceEEecccHHHHHHc
Q 008688 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 350 ~~~kd~~VIVyC~-sG~RSa~AA~~L~~--------lGfknV~vLdGG~~aWkaa 395 (557)
+++++|||||. +|.|+..++..|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 36789999998 67899888887754 4999999999999999864
No 41
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.63 E-value=1.8e-16 Score=164.20 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=136.5
Q ss_pred eEEEee--cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC-CCCeeehhhhHhHHHHHH
Q 008688 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (557)
Q Consensus 183 ~~~~~y--G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~-~~PVv~~~v~vg~~a~l~ 257 (557)
-+||-| ||||||++|++++ ++.+|.+ .| |++|+.|..+ |++|+|.++-+.|+.+ -.|.++ +|.|...-+.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r 270 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFR 270 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeE
Confidence 456666 8999999999998 9999999 77 9999999999 7999999999988663 344443 2333322211
Q ss_pred HHHHHHH------------------h------CCC----------CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCC
Q 008688 258 IFYWWWT------------------Y------GGY----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 303 (557)
Q Consensus 258 ~~~~l~~------------------~------~gy----------~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHI 303 (557)
.+-++-+ | ..+ ..+||..++++++++.+..+|||||++.||+.-|+
T Consensus 271 ~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~l 350 (427)
T KOG2017|consen 271 TIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRL 350 (427)
T ss_pred EEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEec
Confidence 1111100 0 000 12578889999998778899999999999999999
Q ss_pred ccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCC-ce
Q 008688 304 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RA 382 (557)
Q Consensus 304 PGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfk-nV 382 (557)
|+|+ |||+.++.....+... | +......+|+++|+.|+.|.++++.|+...+. ++
T Consensus 351 P~av--------NIPL~~l~~~~~~~~~------------~----~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~v 406 (427)
T KOG2017|consen 351 PEAV--------NIPLKELRSRSGKKLQ------------G----DLNTESKDIFVICRRGNDSQRAVRILREKFPDSSV 406 (427)
T ss_pred cccc--------ccchhhhhhhhhhhhc------------c----cccccCCCEEEEeCCCCchHHHHHHHHhhCCchhh
Confidence 9999 9999988765442110 0 01124578999999999999999999976654 67
Q ss_pred EEecccHHHHHHc
Q 008688 383 FLVQGGFQSWVKE 395 (557)
Q Consensus 383 ~vLdGG~~aWkaa 395 (557)
+-+.||+.+|...
T Consensus 407 rDvigGl~~w~~~ 419 (427)
T KOG2017|consen 407 RDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhHHHHHHHh
Confidence 7889999999863
No 42
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1e-15 Score=157.06 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=100.0
Q ss_pred ccCHHHHHHHHhCC----CCcEEEEcCCh--hhHhhcCCccccccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 008688 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~ea~elLa~~----~~avLIDVRs~--~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~---l~~Llk~p~~Le~lL~ 341 (557)
.++++++.+.|... .++.+++.+.. .+|..+|||||+ .+++...... ..+++++++.+++++.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 58999999988421 26677777665 899999999998 5554433222 3678899999999999
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCcc
Q 008688 342 AAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~~ 405 (557)
++||+ +|++||+|+..+. .+.+++|+|+.+|+++|++|+||+.+|+++|+|++...+.
T Consensus 84 ~~GI~------~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 84 ELGIR------NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HcCCC------CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 99995 8999999997655 8899999999999999999999999999999999985554
No 43
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.60 E-value=2.1e-15 Score=124.27 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=72.6
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCe
Q 008688 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~ 356 (557)
+.+++. .++.+|||+|++.+|..+|||||+ ++|+..+.... ...+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhhc------cCCCCe
Confidence 345553 568999999999999999999999 88876544321 0011 358899
Q ss_pred EEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 357 VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
|||||..|.++..+++.|+.+||+++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.59 E-value=2.4e-15 Score=132.75 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=74.8
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008688 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 271 ~ISp~ea~elLa~~-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI 345 (557)
.|+++++++++.++ ++.+|||||++ ||..+|||||+ |+|+..+.....+++ .....
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhhh
Confidence 58999999999654 46899999999 99999999999 999877654332221 11111
Q ss_pred hhhcccCCCCeEEEEeCC-ChHHHHHHHHHHH----hcC--CceEEecccHHHHH
Q 008688 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLRK----LGV--MRAFLVQGGFQSWV 393 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~s-G~RSa~AA~~L~~----lGf--knV~vLdGG~~aWk 393 (557)
.+.++||+||.+ |.||..++..|.. .|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 246789999997 5788888766543 475 78999999999995
No 45
>PRK01415 hypothetical protein; Validated
Probab=99.59 E-value=4.1e-15 Score=150.00 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=83.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
.|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+...... +++ . ..
T Consensus 113 ~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~-------~~~----~-----~~ 167 (247)
T PRK01415 113 YIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAW-------VQQ----N-----QE 167 (247)
T ss_pred ccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHH-------Hhh----h-----hh
Confidence 599999999995 578999999999999999999999 8987665431110 000 0 01
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaG 396 (557)
.+++++|++||.+|.||..++..|+++||++||.|+||+.+|....
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 2578999999999999999999999999999999999999998744
No 46
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.59 E-value=3.7e-15 Score=131.03 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008688 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG 364 (557)
....+||+|+++||..+|||||+ |+|+.++.....++. .+++++||+||.+|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 35789999999999999999999 999876644322211 13678999999999
Q ss_pred hHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.||..++..|+.+||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999986 99999975
No 47
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.59 E-value=7.7e-16 Score=162.26 Aligned_cols=167 Identities=23% Similarity=0.267 Sum_probs=117.3
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhHhHHHHHHHHHHHHH
Q 008688 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~--~~PVv~~~v~vg~~a~l~~~~~l~~ 264 (557)
|||++|++|+..+ ....|.. +| |++|.-+..+ ++++.|.++-++|+.. .+.++.+..+... +- .+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~---~~--~~~~~ 237 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQ-AG-VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGYYDSLDGT---WE--YIPVV 237 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccc-cC-cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEEEECCCCe---EE--EEecc
Confidence 5899999887543 2334555 66 8999999998 6888999998888642 3334322111100 00 00000
Q ss_pred hC------------------CCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchh
Q 008688 265 YG------------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 326 (557)
Q Consensus 265 ~~------------------gy~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l 326 (557)
.. +....++++++.++. .+.+|||+|+++||+.+|||||+ |+|+.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~ 306 (355)
T PRK05597 238 GNPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGA 306 (355)
T ss_pred CCCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcc
Confidence 00 111246677777543 36899999999999999999999 99987654321
Q ss_pred hhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 327 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 327 ~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.. . ..+++++||+||++|.||..+++.|+++||++|++|+||+.+|++
T Consensus 307 ~~--------------~------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 NP--------------P------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred cc--------------c------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 10 0 124788999999999999999999999999999999999999975
No 48
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.56 E-value=1e-14 Score=147.85 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=82.5
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 008688 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~ea~elLa~~-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alG 344 (557)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.....++ ...+
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l-------~~~~---- 170 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEAL-------AAHR---- 170 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHH-------Hhhh----
Confidence 469999999988652 34899999999999999999999 99987765422211 1100
Q ss_pred HhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
. ..++++|++||.+|.|+..++..|++.||++|+.|+||+.+|.+
T Consensus 171 ----~-~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 171 ----A-DLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred ----h-hcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 0 12689999999999999999999999999999999999999987
No 49
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.55 E-value=1.1e-14 Score=128.82 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008688 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG 364 (557)
.+-+|||+|+++||+.+|||||+ |+|+.++..... .++ .+++++||+||.+|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~--------------~l~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIA--------------TAV------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHH--------------hcC------CCCCCeEEEEeCCC
Confidence 45679999999999999999999 999766543222 111 13678999999999
Q ss_pred hHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.||..+++.|.++||+++++ .||+.+|..
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.53 E-value=2.9e-14 Score=148.36 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=82.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk 349 (557)
..++++++.+++. +++++|||||++.||+.||||||+ |+|+..+...... +.+ .++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~-------l~~---~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPW-------VEE---NLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHH-------HHH---hcC-----
Confidence 3699999999985 567999999999999999999999 8998766432111 110 111
Q ss_pred ccCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
..++++||+||.+|.|+..++..|+.+||++|+.|+||+.+|..
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 24789999999999999999999999999999999999999986
No 51
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.52 E-value=1.2e-14 Score=154.26 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=115.0
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhHhHHHHHHHHHHH--
Q 008688 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWW-- 262 (557)
Q Consensus 189 G~~~~~lpp~i~~--~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~--~~PVv~~~v~vg~~a~l~~~~~l-- 262 (557)
++|++|++|+..+ .+..|.. +| |++|..+..+ ++++.|.++-++|+.+ ...++.+-.+... +..+-|.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~-~g-vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~---~~~~~~~~~ 255 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCAT-AG-VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLSYDALTAT---TRSFRVGAD 255 (370)
T ss_pred CCCcHhhCCCCCccccCCCCcc-CC-cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCE---EEEEEecCC
Confidence 5799999987532 2334533 56 8999999998 6888999998888743 3445432111100 0000000
Q ss_pred ------HHhC-CC-CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCc---cccccccccccccCcccccchhhhhhc
Q 008688 263 ------WTYG-GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKLLR 331 (557)
Q Consensus 263 ------~~~~-gy-~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIP---GAi~a~~~~~~nIPlseL~~~l~~Llk 331 (557)
..+. .| ...++++++.+++.+ ++++|||||++.||+.+||| ||+ |+|+.++.....
T Consensus 256 ~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~---- 322 (370)
T PRK05600 256 PARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDAD---- 322 (370)
T ss_pred CCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchh----
Confidence 0000 11 125789999999954 46799999999999999999 588 999887753210
Q ss_pred CchhhHHHHHHHHHhhhcccCCCCeEEEEeCCChHHHHHHHHHHHhcCCc-eEEecccHH
Q 008688 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (557)
Q Consensus 332 ~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L~~lGfkn-V~vLdGG~~ 390 (557)
.... +...+++ +|||||++|.||..++..|+++||++ |++|+||+.
T Consensus 323 ---~~~~---------l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 323 ---ILHA---------LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ---hhhh---------ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 0000 0012344 89999999999999999999999996 999999985
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.44 E-value=3.5e-13 Score=141.98 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=80.4
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccch--hhh---------------hhcCchh
Q 008688 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKK---------------LLRGGRE 335 (557)
Q Consensus 273 Sp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--l~~---------------Llk~p~~ 335 (557)
...++.+++. ++.+|||||+|.||..||||||+ |+|+.....+ .+. .+.++ .
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~-~ 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAG-N 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcch-h
Confidence 4566777663 47899999999999999999999 9998543211 111 11111 1
Q ss_pred hHHHHHHHHHhhhccc-CCCCeEEEEe-CCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccc
Q 008688 336 LDDTLTAAVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 336 Le~lL~alGI~~Lk~~-~kd~~VIVyC-~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~ 401 (557)
+.+.+... +... +++++||+|| ++|.||..+++.|..+|| ++++|+||+.+|+..+++...
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 12211111 0111 2788999999 578999999999999999 599999999999998886554
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.43 E-value=6.6e-13 Score=120.11 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=74.2
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhh--------hhhcCchhhHHHHH
Q 008688 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK--------KLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISp~ea~elLa~~-~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~--------~Llk~p~~Le~lL~ 341 (557)
.|+|+++.+++..+ ++.+|||+|++.+|..+|||||+ ++|+..+..+.. .++.+++..+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRDR--- 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHHH---
Confidence 38999999999654 57999999999999999999999 888765321100 01211111111
Q ss_pred HHHHhhhcccCCCCeEEEEeCCChH---------HHHHHHHHHH--hcCCceEEecccHHHHHH
Q 008688 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 342 alGI~~Lk~~~kd~~VIVyC~sG~R---------Sa~AA~~L~~--lGfknV~vLdGG~~aWka 394 (557)
+. . .++++||+||.++.+ +..+++.|.. .|+.+|++|+||+.+|+.
T Consensus 70 -l~-----~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 70 -LR-----R-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred -Hh-----c-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 11 1 157899999998865 4455555655 366899999999999976
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.41 E-value=4.3e-13 Score=139.52 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=73.6
Q ss_pred CcEEEEcCChhhHhhcCCccccccccccccccCcccccch--hhhhhcCc--------------hhhHHHHHHHHHhhhc
Q 008688 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG--------------RELDDTLTAAVIRNLK 349 (557)
Q Consensus 286 ~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--l~~Llk~p--------------~~Le~lL~alGI~~Lk 349 (557)
+.+|||||+|.||.+||||||+ |+|+...+.+ .+.+.+.. ..+...+.++. +
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~----~ 69 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWR----A 69 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHH----h
Confidence 4689999999999999999999 9998543221 11111100 01111111110 1
Q ss_pred ccCCCCeEEEEe-CCChHHHHHHHHHHHhcCCceEEecccHHHHHHcCCCcccc
Q 008688 350 IVQDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (557)
Q Consensus 350 ~~~kd~~VIVyC-~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~ 402 (557)
..+++.+||+|| ++|.||..+++.|+.+|| ++++|+||+.+|+..+++....
T Consensus 70 ~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 70 FADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred hcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 123455699999 578999999999999999 6999999999999999877664
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.07 E-value=3.7e-10 Score=115.32 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC---------ChhhHhhcCCccccccccccccccCcccc---cchhhhhhcCchhhHH
Q 008688 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEV---GGSVKKLLRGGRELDD 338 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVR---------s~~Ef~~GHIPGAi~a~~~~~~nIPlseL---~~~l~~Llk~p~~Le~ 338 (557)
-++++++.+++.+ .+.+|||.- ...||..-|||||. ++.++.. ....+.+++.++.+++
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~--------~fdld~~~~~s~~~~~~lp~~e~Fa~ 76 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS--------HFDLDIISYPSSPYRHMLPTAEHFAE 76 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce--------eeeccccccCCCcccccCccHHHHHH
Confidence 4788889998854 679999982 34678888999997 4433332 1234556666677788
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeC--CCh-HHHHHHHHHHHhcCCceEEecccHHHHHHcCCCccccCc
Q 008688 339 TLTAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 339 lL~alGI~~Lk~~~kd~~VIVyC~--sG~-RSa~AA~~L~~lGfknV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
-.+.+|+. +++.+|||++ .|+ .|.+++|+++..||.+|++|+||+.+|+.+|+|+...+.
T Consensus 77 y~~~lGi~------n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 77 YASRLGVD------NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred HHHhcCCC------CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 78888874 7889999999 787 889999999999999999999999999999999988765
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.99 E-value=6.4e-10 Score=121.95 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCcEEEEcCChhhHhhcCCcc----ccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEE
Q 008688 285 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 360 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~~GHIPG----Ai~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVy 360 (557)
++++|||||+++||+.+|||| |+ |+|+.++..... ..++++++|+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~----------------------~l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFG----------------------DLDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHh----------------------hcCCCCeEEEE
Confidence 578999999999999999999 88 999876643211 12478899999
Q ss_pred eCCChHHHHHHHHHHHhcCCceEEecc
Q 008688 361 DADGTRSKGIARSLRKLGVMRAFLVQG 387 (557)
Q Consensus 361 C~sG~RSa~AA~~L~~lGfknV~vLdG 387 (557)
|++|.||..++..|+.+||+||++|.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998864
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.87 E-value=1.9e-09 Score=110.76 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=79.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
-|+|+++.+++ .+++.++||.|..-||.-||..||+ +.+...|.+...+ +++.+ .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~-------v~~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAW-------VEENL---------D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHH-------HHHHH---------H
Confidence 48999999999 4789999999999999999999999 6555544432221 11111 0
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
.-++++|+.||.+|.|...+...|...||++||.|+||+-.+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 12677999999999999999999999999999999999987754
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.81 E-value=1.5e-08 Score=103.79 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=80.3
Q ss_pred CCcEEEEcCChhhHh-----------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 008688 285 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 285 ~~avLIDVRs~~Ef~-----------~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~k 353 (557)
.+...+|.|...+|. .||||||+ |+|+.++...-+.+.+ ++++...+...|+. .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k~-~edl~~~f~~~~l~------~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIKP-AEDLKHLFAQKGLK------L 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccCC-HHHHHHHHHhcCcc------c
Confidence 468999999999883 57999999 9999887765444443 68888888887774 6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHH
Q 008688 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 354 d~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWka 394 (557)
++|+|+-|..|..+...+-.|.+.| .++.+|+|+|.+|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 789999999999975
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=2.6e-07 Score=96.38 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=73.4
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 008688 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISp~ea~elLa~~-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alG 344 (557)
..|||+.++.++++. ...+|||+|-|-||..|||+||+ |++..+...... +.+ . +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f-~~~--~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF-LLK--D---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh-ccc--c---------c
Confidence 469999999999642 12679999999999999999999 887554332211 000 0 0
Q ss_pred HhhhcccCCCCeEEEEeCCCh-HHHHHHHHHHH------------hcCCceEEecccHHHHHHcC
Q 008688 345 IRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 345 I~~Lk~~~kd~~VIVyC~sG~-RSa~AA~~L~~------------lGfknV~vLdGG~~aWkaaG 396 (557)
. +...+...+||||..-. |...+|..|+. +-|.++|+|+||+..|-..-
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~ 277 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNY 277 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhc
Confidence 0 00013457899998654 99999999983 34568999999999997643
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00061 Score=71.39 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 008688 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~-----~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~al 343 (557)
...|+++.++.++++. -+.+|||.|-+-||..|||-+|+ ||.-.+ .+... +
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~----------F--- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLL----------F--- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHH----------H---
Confidence 3579999999998642 23789999999999999999998 764221 11111 1
Q ss_pred HHhhhcccCCCCeEEEEeCC-ChHHHHHHHHHHHh------------cCCceEEecccHHHHHH
Q 008688 344 VIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~Lk~~~kd~~VIVyC~s-G~RSa~AA~~L~~l------------GfknV~vLdGG~~aWka 394 (557)
+. |.+..-.-+||+|.. .+|+.+.|.-|+.+ =|..||+|+||+.+.-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 10 111124568999986 45999999888543 25589999999987654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=94.29 E-value=0.066 Score=56.05 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccch--hhhhhcC-ch-------------hh-HH
Q 008688 276 STLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRG-GR-------------EL-DD 338 (557)
Q Consensus 276 ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~--l~~Llk~-p~-------------~L-e~ 338 (557)
+...++. .+..|||||.|.||..||.|++. |.|.-.-+.. ...-.+. .. .+ ..
T Consensus 7 ~~~~~~~--~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~ 76 (334)
T COG2603 7 DYRALLL--ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQ 76 (334)
T ss_pred HHHHHHh--cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHH
Confidence 3444443 36789999999999999999998 6663221111 1111110 00 00 11
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeCCC-hHHHHHHHHH-HHhcCCceEEecccHHHHH
Q 008688 339 TLTAAVIRNLKIVQDRSKVIVMDADG-TRSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 339 lL~alGI~~Lk~~~kd~~VIVyC~sG-~RSa~AA~~L-~~lGfknV~vLdGG~~aWk 393 (557)
+|.+.. ..-.+.++-++|..| .||...+..| ...|++ .--+.||+.+.+
T Consensus 77 ~l~ask-----~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 77 RLEASK-----AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHHH-----HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 122111 122456777778665 4999999999 677875 334669987554
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.22 E-value=0.15 Score=47.16 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=59.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccc------cccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGA------i~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~al 343 (557)
+.++++++..+.+ ..=-.+||.|+..|... -|.. .......|.++|+..- .. +++.+....+.+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~~--~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTAG--DI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCCC--CC-----CHHHHHHHHHHH
Confidence 5789999888653 33457999999877432 2221 0011234556775421 11 122222211111
Q ss_pred HHhhhcccCCCCeEEEEeCCChHHHHHHHHH-HHhcCCceEEecccHHHHHHcCCCccc
Q 008688 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 344 GI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~L-~~lGfknV~vLdGG~~aWkaaGLPV~~ 401 (557)
. ..+.||++||++|.|+..+|.++ ...|...--++ ..=+..|+.+..
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i~----~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEIV----RRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHHH----HHHHHcCCCccc
Confidence 1 14689999999999987776543 34454321122 233556666553
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.20 E-value=0.085 Score=47.63 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=41.1
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccc------cccccccccccCcccccchhhhhhcCchhhHHHHHH
Q 008688 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGA------i~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~a 342 (557)
.+.++++++.++.+. .=-.||+.|+..|- .+-|.. ....-..|.++|+..-. . +++.++.....
T Consensus 12 s~Q~~~~d~~~la~~-GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~--~-----~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQ-GFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDGGA--I-----TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHHC-T--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----TTT---------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC-CCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCCCC--C-----CHHHHHHHHHH
Confidence 357999999988753 33579999987653 222221 11223455677765311 1 11222222111
Q ss_pred HHHhhhcccCCCCeEEEEeCCChHHHHHHHH
Q 008688 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~ 373 (557)
+. ...+||.+||++|.|+...|.+
T Consensus 82 l~-------~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 LE-------SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HH-------TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HH-------hCCCCEEEECCCChhHHHHHHH
Confidence 11 1356999999999999765544
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=88.87 E-value=1.8 Score=40.84 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=43.3
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcC---CccccccccccccccCcccccch--------------------
Q 008688 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPEVGGS-------------------- 325 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GH---IPGAi~a~~~~~~nIPlseL~~~-------------------- 325 (557)
...+|+++...+. +-.=-.+||.|++.|..+.. ++|. .+.++|+..-...
T Consensus 27 l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~~~g~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 27 LSNLTEADLERLR-ELGIRTIIDLRSPTERERAPDPLIDGV------QYVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp -TT--HHHHHHHH-HTT--EEEE-S-HHHHHHHS----TT-------EEEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cCcCCHHHHHHHH-hCCCCEEEECCCccccccCCCCCcCCc------eeeeecccccccccccccccccccccchhhHHH
Confidence 3468898887776 33346799999999987652 2232 2234443211111
Q ss_pred --hhhhhcC-chhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh-HHHHHHH-HHHHhcCC
Q 008688 326 --VKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIAR-SLRKLGVM 380 (557)
Q Consensus 326 --l~~Llk~-p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~-RSa~AA~-~L~~lGfk 380 (557)
...++.. .+.+.+++..+- +...+++|||..|. |+..++. .|..+|..
T Consensus 100 ~~Y~~~~~~~~~~~~~~~~~l~-------~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 100 EFYREMLESYAEAYRKIFELLA-------DAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHH--------TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-------cCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 0111111 223333332221 22369999999998 7766554 45677865
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.39 E-value=0.2 Score=56.63 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=61.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~ 350 (557)
+|+++++..+ +...++|.|...||.++|+++++ |+|...-++...++.. +. ++.
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l~------~~~---- 676 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----LP------GIV---- 676 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----ch------HhH----
Confidence 4566655544 35689999999999999999999 9998733333333221 11 111
Q ss_pred cCCCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHH
Q 008688 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aW 392 (557)
.-.+..++++.....-+......+..+-+.+..++.+|+...
T Consensus 677 ~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 677 CSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred HhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 114556666655555555555556666677778888888743
No 66
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=88.34 E-value=0.064 Score=45.75 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=32.3
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCc
Q 008688 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf 237 (557)
+|||||++|+..+....|.+ .| |++|+-+..+ +.++.|.++-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~-~G-Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAE-AG-VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSST-S--B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccc-cc-cccchHHHHH-HHHHHHHHHHHHhc
Confidence 69999999999666667777 67 8999988888 68888888888875
No 67
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=83.07 E-value=2.5 Score=37.82 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.5
Q ss_pred CCCeEEEEeCCCh-HHHHH--HHHHHHhcC
Q 008688 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~A--A~~L~~lGf 379 (557)
.+.+|+|||..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999998 88654 334444443
No 68
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=82.86 E-value=2.8 Score=36.73 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008688 446 WEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLL 483 (557)
Q Consensus 446 ~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l 483 (557)
...+++++|+.=.+.+.++.++..++|++|.+.++.+-
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k 85 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLK 85 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHH
Confidence 56778999999999999999999999999999998653
No 69
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=81.76 E-value=0.18 Score=53.17 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=41.0
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhh
Q 008688 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (557)
Q Consensus 268 y~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Ll 330 (557)
|..--+|+++.+.+.. ....+|+|.+..|..+||||++ ++|...+....+++.
T Consensus 12 f~~i~~~~~~~~~l~~--~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHLA--LCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHHH--HHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 4444568888888753 5789999999999999999999 899866666555444
No 70
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=79.70 E-value=4.8 Score=39.28 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=35.4
Q ss_pred EEEcCChhhHhhcCCccccc---cccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCCeEEEEeCCCh
Q 008688 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (557)
Q Consensus 289 LIDVRs~~Ef~~GHIPGAi~---a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI~~Lk~~~kd~~VIVyC~sG~ 365 (557)
+|=.-+..|..+-++|+-.. ..-..|.++|..+.... +.+...+++..+.. . +..+++|++||.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~~-~---L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELAA-R---LENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHHH-H---HHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHHH-H---HHcCCEEEEECCCCC
Confidence 34466777777777776421 12245667776654321 11122222222211 1 236889999999987
Q ss_pred -HHHH-HHHHHHHhc
Q 008688 366 -RSKG-IARSLRKLG 378 (557)
Q Consensus 366 -RSa~-AA~~L~~lG 378 (557)
|+.. +|..|..+|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 8866 555666666
No 71
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=79.63 E-value=3.9 Score=33.15 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=29.3
Q ss_pred hhhhhhchhhhhhHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008688 428 QFLGFGVGCFAVLYVLLEWEKTLQFIGVIGLGQTIYRRVASYNDAEDFK 476 (557)
Q Consensus 428 ~llG~~~G~~~~~~a~~~~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~ 476 (557)
+++|.++.+.+. +....+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~-~~~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGL-LGLFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHH-HhcccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 455554443322 2222222445 89999998888 999999988876
No 72
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=77.72 E-value=3.2 Score=38.47 Aligned_cols=71 Identities=13% Similarity=-0.024 Sum_probs=38.6
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeeehhhh-HhHHHHHHHHHHHHHhCC
Q 008688 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVF-LGTSATLWIFYWWWTYGG 267 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~~~PVv~~~v~-vg~~a~l~~~~~l~~~~g 267 (557)
||++.....++.+.++. .+....+... ...++.+.+.+|++++++||+|.-. .++..+ .-+||.+++.|
T Consensus 53 GHIPgAv~~~~~~~~~~----~~~~~~~~p~-----~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A-~r~~~~l~~~G 122 (138)
T cd01445 53 GHIPGASFFDFEECLDE----AGFEESMEPS-----EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTA-CHIALAARLCG 122 (138)
T ss_pred CcCCCCEeeCHHHhhCc----CCCCCCCCCC-----HHHHHHHHHHcCCCCCCeEEEECCCCCcchHH-HHHHHHHHHcC
Confidence 89998887776654322 1211111111 2236666677899999999865321 011111 12466677766
Q ss_pred CC
Q 008688 268 YS 269 (557)
Q Consensus 268 y~ 269 (557)
+.
T Consensus 123 ~~ 124 (138)
T cd01445 123 HP 124 (138)
T ss_pred CC
Confidence 63
No 73
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.40 E-value=0.45 Score=50.73 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=69.2
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhHhHHH------------
Q 008688 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSA------------ 254 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~--~~PVv~~~v~vg~~a------------ 254 (557)
++|++|+.++..+.-..|.+ +| |+.|..+... ++++.|.++-++|... ...++.+..+.....
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~-~g-v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDT-AG-IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCcc-CC-cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 58999998876553334544 56 7888888777 6888888887777532 233332221111000
Q ss_pred -HHH-------HHHH------HHHh-------CCCCCccCHHHHHHHHhC-----CCCcEEEEcCChhhHhhcCCcccc
Q 008688 255 -TLW-------IFYW------WWTY-------GGYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 255 -~l~-------~~~~------l~~~-------~gy~g~ISp~ea~elLa~-----~~~avLIDVRs~~Ef~~GHIPGAi 307 (557)
.+. .-+- .+-- .+....++++++.++++. +.+..|||+|++. |+-.|+|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 000 0000 0000 111236899999988832 3478999999999 9999999765
No 74
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=73.21 E-value=3 Score=43.62 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=24.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCcccc
Q 008688 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 272 ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGAi 307 (557)
+|..++.+.+. .++.+++|.|+ +..||.+|+
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~ 36 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI 36 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh
Confidence 56677777774 46799999999 556888886
No 75
>PLN02777 photosystem I P subunit (PSI-P)
Probab=72.41 E-value=4 Score=39.65 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcc
Q 008688 446 WEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLLA 484 (557)
Q Consensus 446 ~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~ 484 (557)
...+||++|+.=.|++.++.|++.++|++|+++++.+-.
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~ 161 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYK 161 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999997643
No 76
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=65.47 E-value=17 Score=32.66 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.3
Q ss_pred CCCCeEEEEeCCCh-HHHH--HHHHHHHhcC
Q 008688 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 352 ~kd~~VIVyC~sG~-RSa~--AA~~L~~lGf 379 (557)
..+.+|+|||..|. ||.. +++++...|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 36789999999997 8865 3445566665
No 77
>PLN02806 complex I subunit
Probab=63.56 E-value=8.1 Score=33.34 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=41.3
Q ss_pred hhhhhhhchhhhhh---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008688 427 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIGVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 487 (557)
Q Consensus 427 l~llG~~~G~~~~~---------~a~~~~~~~Lq~~G~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~p~~ 487 (557)
..++|+++|+..-+ |.-.||+..+ +.|+|..|.+.+-.+| .++.+||.+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45677787866543 4457899988 7889999998888887 468899988776655
No 78
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=58.16 E-value=19 Score=32.06 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=20.1
Q ss_pred CCCeEEEEeCCCh-HHHHH--HHHHHHhcCC
Q 008688 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGVM 380 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~A--A~~L~~lGfk 380 (557)
++.+|+|||..|. ||..+ +.++...|.+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 6789999999998 77653 3445556653
No 79
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=56.87 E-value=10 Score=34.42 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEeCCCh-HHHHHHHHHHHh----cCCceEEecccHHHH
Q 008688 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RSa~AA~~L~~l----GfknV~vLdGG~~aW 392 (557)
|+|+|.+.. ||..+...|+++ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998866 999998888888 777899999998766
No 80
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=56.49 E-value=37 Score=38.19 Aligned_cols=91 Identities=10% Similarity=0.143 Sum_probs=49.1
Q ss_pred cEEEEcCChhhHhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHH---HHhhhcc-cC-CCCeEEEEe
Q 008688 287 AVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA---VIRNLKI-VQ-DRSKVIVMD 361 (557)
Q Consensus 287 avLIDVRs~~Ef~~GHIPGAi~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~al---GI~~Lk~-~~-kd~~VIVyC 361 (557)
..+||.|+.++|..||.-.|. |..- .-++.+|+.++..+..+ .-+.+.. -+ .+..+.|+
T Consensus 327 FFiVDcRpaeqynaGHlstaF--------hlDc-------~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm- 390 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF--------HLDC-------VLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM- 390 (669)
T ss_pred EEEEeccchhhcccccchhhh--------cccH-------HHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-
Confidence 579999999999999998886 4321 11334455554333221 1000110 01 23456555
Q ss_pred CCCh-----HHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 362 ADGT-----RSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 362 ~sG~-----RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
.+|. ....+...+-+.+-.-|.++.||+....
T Consensus 391 GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 391 GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 3443 2222323333444445889999998655
No 81
>PLN02727 NAD kinase
Probab=54.01 E-value=23 Score=42.94 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=49.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCcc----ccccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 008688 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 270 g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPG----Ai~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~alGI 345 (557)
+.++++++..+.++ .=-.||+.|+..|- .+..+- +.......+.++|+...... .++.+++....+.-
T Consensus 267 gQpspe~la~LA~~-GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~ap------t~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLEK-GFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAP------SAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHHC-CCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCC------CHHHHHHHHHHHHh
Confidence 57999999887643 23469999997772 222211 11112244557776432211 12333332221100
Q ss_pred hhhcccCCCCeEEEEeCCCh-HH-HHHHHHHH
Q 008688 346 RNLKIVQDRSKVIVMDADGT-RS-KGIARSLR 375 (557)
Q Consensus 346 ~~Lk~~~kd~~VIVyC~sG~-RS-a~AA~~L~ 375 (557)
...+||++||++|. |+ ..+|..+.
T Consensus 339 ------slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hcCCCEEEECCCCCchHHHHHHHHHH
Confidence 14689999999999 44 33444443
No 82
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=51.93 E-value=18 Score=34.03 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCeEEEEe-C----CChHHHHHHHHHHHhcCCceEEecccHHHHH
Q 008688 353 DRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 353 kd~~VIVyC-~----sG~RSa~AA~~L~~lGfknV~vLdGG~~aWk 393 (557)
++.+++++| . .|..-...+..|+++|..++.+|+||-....
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 455666655 4 3677788999999999999999999976443
No 83
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.46 E-value=40 Score=38.34 Aligned_cols=106 Identities=24% Similarity=0.392 Sum_probs=63.3
Q ss_pred hhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhccccccCcCCCCccccc---
Q 008688 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (557)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--- 148 (557)
+..+..++-++..|+--++..--+ |.=|.+.||++|.-+ |.|++.+ + .-.++-.+|-. ++.|.++-+||
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~--e-iA~~LcEsV~a--~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAA--E-IAEKLCESVAA--SLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhH--H-HHHHHHHHHHH--HhhhcccccchHHH
Confidence 445566777777777644433323 445777788877643 2333321 1 11223333322 56777777775
Q ss_pred hhhHHHhhhc------cchhhhhhhhhHHhhhhhhccCcceEEEeec
Q 008688 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG 189 (557)
Q Consensus 149 ~~l~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG 189 (557)
+..|+|...+ +..+||.||.-+.+=+ +.+|||+-.-|
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~----~krPYVi~fvG 385 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARR----RKRPYVISFVG 385 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh----cCCCeEEEEEe
Confidence 4555555443 7799999997665544 45999998877
No 84
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=50.29 E-value=2.5 Score=39.45 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=6.0
Q ss_pred hHHHhhHhhhhhhHHHh
Q 008688 98 NAVKSSLDTITSSLTSI 114 (557)
Q Consensus 98 ~a~~~~~~~~~~~~~~~ 114 (557)
+.+...++.+...+.+.
T Consensus 52 ~~l~~~~~~~~~~i~~~ 68 (202)
T PF01442_consen 52 DRLEERLDEVKERIEER 68 (202)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 85
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=49.10 E-value=31 Score=36.64 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhh---cCCc
Q 008688 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (557)
Q Consensus 271 ~ISp~ea~elLa~~~~avLIDVRs~~Ef~~---GHIP 304 (557)
.+...++.+.+.+ .++.+||+|+..+|+. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 3567788888854 4789999999999998 8888
No 86
>PRK08223 hypothetical protein; Validated
Probab=48.09 E-value=10 Score=40.01 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=11.8
Q ss_pred eEEEeecccCCCCCcc
Q 008688 183 FVVYYYGTTKESLPPE 198 (557)
Q Consensus 183 ~~~~~yG~~~~~lpp~ 198 (557)
++++..||||+|++|.
T Consensus 160 ~v~~p~~p~~~~~f~~ 175 (287)
T PRK08223 160 LVFDPGGMSFDDYFDL 175 (287)
T ss_pred EEEcCCCCchhhhcCC
Confidence 3444468999999876
No 87
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=44.90 E-value=24 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.0
Q ss_pred EEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008688 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aW 392 (557)
|+|+|.+.. ||..+...|+++.-.++.+..-|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578998765 999999999887655688888888776
No 88
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.64 E-value=35 Score=36.72 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHhcCCceEEecccHHHHHHcC
Q 008688 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 353 kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~vLdGG~~aWkaaG 396 (557)
++++|+++ ..|.....++..|...|+.++.++++..-.+.+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 46677776 55666778999999999999999999876665543
No 89
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.31 E-value=43 Score=28.95 Aligned_cols=48 Identities=6% Similarity=0.198 Sum_probs=26.8
Q ss_pred chhhcccchhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhh
Q 008688 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS 117 (557)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (557)
.|..+..+++++...+.+.....+.++.+-+++.++.++..+.++...
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555555555555555555544443333
No 90
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.95 E-value=72 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.3
Q ss_pred eEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHH
Q 008688 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (557)
Q Consensus 356 ~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~ 390 (557)
+|+|+|.+.. ||..+...|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6999998765 9998888888887666777766643
No 91
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.86 E-value=78 Score=30.25 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCCeEEEEeCCCh---HHHHHHHHHHHhcCCceEE--eccc----------HHHHHHcCCCccccC
Q 008688 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQGG----------FQSWVKEGLRIKELK 403 (557)
Q Consensus 352 ~kd~~VIVyC~sG~---RSa~AA~~L~~lGfknV~v--LdGG----------~~aWkaaGLPV~~~~ 403 (557)
++..+|+++|..|+ ..-.+|+.|...|++ |.+ +... +..+++.|.++....
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 46789999999887 566788999999996 554 3221 345666777666533
No 92
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=30.58 E-value=51 Score=31.83 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCCh-HHHH--HHHHHHHhcC
Q 008688 353 DRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~--AA~~L~~lGf 379 (557)
+..+|+|||..|. ||.. +|+.|...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 5669999999997 7755 4456665444
No 93
>PRK10126 tyrosine phosphatase; Provisional
Probab=30.49 E-value=64 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.8
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008688 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aW 392 (557)
.+|+|+|.+.. ||..+...|+.++- ++.+..-|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998765 99998888888763 366666676554
No 94
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.16 E-value=58 Score=28.14 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=25.7
Q ss_pred chhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHhhhhhhHhhhhhhhhhhhcccc
Q 008688 77 SFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ 135 (557)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 135 (557)
.+.++.+.+.+-+.+..+.+.+.+.+.-+++...+.++-..+.+..+.+..+.....++
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 64 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQ 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444333
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=74 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHhcCCceEE
Q 008688 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFL 384 (557)
Q Consensus 352 ~kd~~VIVyC~sG~RSa~AA~~L~~lGfknV~v 384 (557)
.++..+++||+.-.+.....+.|++.||.++..
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 478999999999999999999999999976543
No 96
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=28.36 E-value=53 Score=30.01 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.6
Q ss_pred eEEEEeCCCh-HHHHHHHHHHHhcCC-ceEEecccHHHH
Q 008688 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (557)
Q Consensus 356 ~VIVyC~sG~-RSa~AA~~L~~lGfk-nV~vLdGG~~aW 392 (557)
+|+|+|.+.. ||..+...++++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6999998765 999888888877654 677788887543
No 97
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.21 E-value=1.1e+02 Score=28.86 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=47.4
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCccc------cccccccccccCcccccchhhhhhcCchhhHHHHHH
Q 008688 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISp~ea~elLa~~~~avLIDVRs~~Ef~~GHIPGA------i~a~~~~~~nIPlseL~~~l~~Llk~p~~Le~lL~a 342 (557)
.+.++++++.++.+. .=..+|--||..|= -.=|+. ...+-..|.+||...-.- ..+.++..-++
T Consensus 13 sgQi~~~D~~~iaa~-GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~i-------T~~dV~~f~~A 82 (130)
T COG3453 13 SGQISPADIASIAAL-GFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGI-------TEADVEAFQRA 82 (130)
T ss_pred cCCCCHHHHHHHHHh-ccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCC-------CHHHHHHHHHH
Confidence 467899999888643 22458888885542 222322 111122344666543110 01122221112
Q ss_pred HHHhhhcccCCCCeEEEEeCCChHHHHHHHH
Q 008688 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~Lk~~~kd~~VIVyC~sG~RSa~AA~~ 373 (557)
+. ..+.||+-||++|.||...+..
T Consensus 83 l~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 83 LD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HH-------HhCCCEEeeecCCchHHHHHHH
Confidence 21 2567999999999999766543
No 98
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=27.05 E-value=39 Score=29.66 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred hhccCcce-------EEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeee
Q 008688 176 SMTNGASF-------VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVP 245 (557)
Q Consensus 176 ~~~~~~~~-------~~~~yG~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~~~PVv~ 245 (557)
.+.|.|+- -.|..||++..+.....+.........+. .. ....++.....++++.+.||++
T Consensus 17 ~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~vv~ 84 (122)
T cd01448 17 RILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHM-------LP--SPEEFAELLGSLGISNDDTVVV 84 (122)
T ss_pred EEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCC-------CC--CHHHHHHHHHHcCCCCCCEEEE
Confidence 45666665 55667888877665555433321111221 11 1223444445568899999985
No 99
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.67 E-value=84 Score=29.34 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.6
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccHHHH
Q 008688 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~~aW 392 (557)
++|+|+|.+.. ||..+...|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999997665 99988888887653 466677777655
No 100
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.98 E-value=1.6e+02 Score=28.37 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=40.6
Q ss_pred cCCCCeEEEEeCCCh--HHHHHHHHHHHh---cCCceEEecccHHHHH-----HcCCCccccCccchhhhhh
Q 008688 351 VQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSWV-----KEGLRIKELKSETALTILN 412 (557)
Q Consensus 351 ~~kd~~VIVyC~sG~--RSa~AA~~L~~l---GfknV~vLdGG~~aWk-----aaGLPV~~~~~~~~lel~~ 412 (557)
++++..+|+.|..|. .|...|..|... |..++..+-||-.++. .+...+.-.+-..|-++.+
T Consensus 64 l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~lar 135 (157)
T PRK00103 64 LPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVR 135 (157)
T ss_pred CCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHH
Confidence 346677888998887 888888888654 4557888999876552 2444444433444555433
No 101
>PRK13530 arsenate reductase; Provisional
Probab=25.24 E-value=1.1e+02 Score=28.07 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.3
Q ss_pred CeEEEEeCCCh-HHHHHHHHHHHhcCCceEEecccH
Q 008688 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (557)
Q Consensus 355 ~~VIVyC~sG~-RSa~AA~~L~~lGfknV~vLdGG~ 389 (557)
++|+|+|.+.. ||..+...++.++-+++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999998765 998888888776545676776665
No 102
>PRK12361 hypothetical protein; Provisional
Probab=25.20 E-value=1.5e+02 Score=33.58 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=14.2
Q ss_pred CCCeEEEEeCCCh-HHHH
Q 008688 353 DRSKVIVMDADGT-RSKG 369 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~ 369 (557)
.+.+|+|||..|. ||..
T Consensus 174 ~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 174 ANKSVVVHCALGRGRSVL 191 (547)
T ss_pred CCCeEEEECCCCCCcHHH
Confidence 5689999999998 7755
No 103
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=24.66 E-value=3.8e+02 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.4
Q ss_pred CCCCeEEEEeCCCh-HHHHH
Q 008688 352 QDRSKVIVMDADGT-RSKGI 370 (557)
Q Consensus 352 ~kd~~VIVyC~sG~-RSa~A 370 (557)
.++.+|+|||..|. ||...
T Consensus 96 ~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 35889999999997 87663
No 104
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=24.35 E-value=1.2e+02 Score=26.21 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=32.5
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHhCCC
Q 008688 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGY 268 (557)
Q Consensus 189 G~~~~~lpp~i~~~l~~~e~~ag~Vl~~~G~~~~q~~~aiE~l~~vlGf~~~~PVv~~~v~vg~~a~l~~~~~l~~~~gy 268 (557)
||++.++.....+.... .+ .... ...++.+...+++++++++|++.-- |.. ....++.++..||
T Consensus 40 ghIpgA~~~p~~~~~~~----~~-------~~~~--~~~~~~~~~~~~~~~~~~iv~yc~~-g~~--s~~~~~~l~~~G~ 103 (118)
T cd01449 40 GHIPGAVNIPWTSLLDE----DG-------TFKS--PEELRALFAALGITPDKPVIVYCGS-GVT--ACVLLLALELLGY 103 (118)
T ss_pred CcCCCCcccChHHhcCC----CC-------CcCC--HHHHHHHHHHcCCCCCCCEEEECCc-HHH--HHHHHHHHHHcCC
Confidence 89888776655543321 11 1111 2234445555688899999864221 211 1123555566666
No 105
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.97 E-value=1.5e+02 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCCh-HHHH-HHHHHHHhcC
Q 008688 353 DRSKVIVMDADGT-RSKG-IARSLRKLGV 379 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~-AA~~L~~lGf 379 (557)
.+.+|+|||..|. |+.. +|..|...|+
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5778999999987 7755 4444544554
No 106
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.98 E-value=2.4e+02 Score=27.06 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=36.9
Q ss_pred cccCCCCeEEEEeCCCh--HHHHHHHHHHH---hcCCceEEecccHHHH----H-HcCCCccccCccchhhhhh
Q 008688 349 KIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW----V-KEGLRIKELKSETALTILN 412 (557)
Q Consensus 349 k~~~kd~~VIVyC~sG~--RSa~AA~~L~~---lGfknV~vLdGG~~aW----k-aaGLPV~~~~~~~~lel~~ 412 (557)
+..+++..+|+.|..|. .|...|..|.. .|..++..+-||-.++ + .+...+.-.+-..|-++.+
T Consensus 62 ~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~lar 135 (155)
T PF02590_consen 62 KKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLAR 135 (155)
T ss_dssp CTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHH
T ss_pred hhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHH
Confidence 33457888999999987 88888888865 5777899999986433 3 2445454444444555433
No 107
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=22.96 E-value=1.1e+02 Score=29.44 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCCh-HHHHHHHHHHHh-cCCceEEecccHHHHHH
Q 008688 353 DRSKVIVMDADGT-RSKGIARSLRKL-GVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VIVyC~sG~-RSa~AA~~L~~l-GfknV~vLdGG~~aWka 394 (557)
.+.||++||.+|. |+..+.-.|++. |+. +..=+.+++.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~----~~~i~~Ey~~ 129 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGWS----LSSIFDEYRR 129 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCCC----HHHHHHHHHH
Confidence 5689999999998 898888888764 332 4444455554
No 108
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.22 E-value=1.3e+02 Score=31.02 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCh---HHHHHHHHHHHhcCCceEEe
Q 008688 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VIVyC~sG~---RSa~AA~~L~~lGfknV~vL 385 (557)
..+|+|+|..|+ ..-.+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 368999998665 777899999999995 5544
Done!