Query 008689
Match_columns 557
No_of_seqs 507 out of 4398
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.9E-66 4E-71 504.4 40.8 354 162-552 2-361 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 8.2E-37 1.8E-41 275.4 18.9 278 267-546 7-329 (329)
3 KOG0543 FKBP-type peptidyl-pro 100.0 3E-36 6.4E-41 293.7 19.5 351 45-513 1-357 (397)
4 KOG0549 FKBP-type peptidyl-pro 100.0 4.3E-29 9.2E-34 216.2 13.6 169 85-262 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 99.9 4.1E-27 8.9E-32 203.9 16.2 176 197-386 1-180 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 9.6E-27 2.1E-31 176.7 11.6 106 38-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.6E-26 3.5E-31 205.3 12.7 108 33-143 97-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 1.1E-24 2.5E-29 165.5 11.0 105 272-381 3-107 (108)
9 PRK11570 peptidyl-prolyl cis-t 99.9 4E-22 8.6E-27 184.6 14.4 108 33-143 98-205 (206)
10 TIGR03516 ppisom_GldI peptidyl 99.9 1.9E-21 4.2E-26 175.7 14.5 110 33-144 65-176 (177)
11 KOG0552 FKBP-type peptidyl-pro 99.9 1E-21 2.2E-26 179.6 12.4 107 34-143 117-225 (226)
12 COG0545 FkpA FKBP-type peptidy 99.9 2.5E-21 5.4E-26 172.3 11.6 103 150-260 98-204 (205)
13 KOG0553 TPR repeat-containing 99.9 3.6E-21 7.8E-26 181.1 12.5 125 394-533 76-200 (304)
14 KOG4234 TPR repeat-containing 99.9 1.4E-20 3.1E-25 165.7 15.4 143 394-549 90-232 (271)
15 PRK10902 FKBP-type peptidyl-pr 99.8 1.2E-19 2.7E-24 174.1 14.8 109 34-146 143-251 (269)
16 PF00254 FKBP_C: FKBP-type pep 99.8 8.6E-19 1.9E-23 143.5 12.0 93 49-141 1-94 (94)
17 KOG0552 FKBP-type peptidyl-pro 99.8 2.8E-18 6E-23 157.1 11.7 105 149-260 116-225 (226)
18 PRK15095 FKBP-type peptidyl-pr 99.8 3.3E-18 7.2E-23 151.7 10.0 133 52-193 4-139 (156)
19 COG1047 SlpA FKBP-type peptidy 99.7 6.4E-18 1.4E-22 148.2 9.4 134 52-197 2-140 (174)
20 TIGR03516 ppisom_GldI peptidyl 99.7 1.6E-17 3.5E-22 150.2 12.0 105 151-261 67-176 (177)
21 PRK11570 peptidyl-prolyl cis-t 99.7 5.4E-17 1.2E-21 150.5 12.3 103 150-260 99-205 (206)
22 KOG0547 Translocase of outer m 99.7 1.4E-16 3.1E-21 157.8 14.4 134 388-536 104-238 (606)
23 KOG4648 Uncharacterized conser 99.7 7.7E-17 1.7E-21 153.0 10.4 123 392-529 90-212 (536)
24 PRK10737 FKBP-type peptidyl-pr 99.7 1.1E-16 2.4E-21 145.4 10.9 125 52-193 2-135 (196)
25 KOG0548 Molecular co-chaperone 99.7 1.8E-16 3.9E-21 159.4 12.3 117 398-529 357-473 (539)
26 PF00254 FKBP_C: FKBP-type pep 99.7 1.3E-15 2.9E-20 124.5 12.1 94 282-379 1-94 (94)
27 KOG0551 Hsp90 co-chaperone CNS 99.6 3.6E-15 7.8E-20 141.6 13.6 107 397-514 79-185 (390)
28 KOG0550 Molecular chaperone (D 99.6 2.3E-15 5E-20 146.7 10.9 129 395-535 245-373 (486)
29 PRK10902 FKBP-type peptidyl-pr 99.6 6E-15 1.3E-19 141.9 12.3 104 150-262 143-250 (269)
30 PLN03088 SGT1, suppressor of 99.6 4.2E-14 9.2E-19 144.3 14.1 119 399-532 2-120 (356)
31 KOG0548 Molecular co-chaperone 99.5 2.7E-14 5.8E-19 143.9 12.0 113 399-526 2-114 (539)
32 TIGR00990 3a0801s09 mitochondr 99.5 3.6E-13 7.7E-18 148.6 17.6 134 366-516 95-228 (615)
33 PRK15359 type III secretion sy 99.5 4.3E-13 9.3E-18 118.7 13.7 113 402-529 27-139 (144)
34 KOG4642 Chaperone-dependent E3 99.4 4E-13 8.7E-18 122.3 7.9 115 397-526 8-127 (284)
35 KOG0376 Serine-threonine phosp 99.4 4.7E-13 1E-17 134.1 8.1 121 398-533 3-123 (476)
36 PRK15363 pathogenicity island 99.4 1.1E-11 2.3E-16 108.2 14.3 103 398-515 34-136 (157)
37 KOG0546 HSP90 co-chaperone CPR 99.4 6.8E-13 1.5E-17 127.8 7.2 155 391-545 214-372 (372)
38 PRK15095 FKBP-type peptidyl-pr 99.4 2.2E-12 4.7E-17 114.6 8.7 68 168-235 4-75 (156)
39 COG1047 SlpA FKBP-type peptidy 99.4 2.7E-12 5.8E-17 112.9 8.9 123 169-308 3-134 (174)
40 TIGR02552 LcrH_SycD type III s 99.4 1.5E-11 3.3E-16 107.7 13.8 116 399-529 17-132 (135)
41 KOG4626 O-linked N-acetylgluco 99.3 1.2E-11 2.5E-16 126.3 9.4 134 396-545 249-382 (966)
42 PRK10737 FKBP-type peptidyl-pr 99.2 2.1E-11 4.6E-16 111.0 8.8 67 169-235 3-72 (196)
43 PF13414 TPR_11: TPR repeat; P 99.2 4.3E-11 9.3E-16 91.6 7.2 65 449-513 4-69 (69)
44 PRK11189 lipoprotein NlpI; Pro 99.2 2.9E-10 6.3E-15 113.5 14.7 105 397-516 62-166 (296)
45 KOG4626 O-linked N-acetylgluco 99.2 9.5E-11 2.1E-15 119.8 10.3 81 448-528 388-468 (966)
46 PRK10370 formate-dependent nit 99.2 5.4E-10 1.2E-14 104.3 13.4 110 398-522 72-184 (198)
47 TIGR00990 3a0801s09 mitochondr 99.1 6.4E-10 1.4E-14 122.8 15.3 148 397-545 329-495 (615)
48 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.5E-09 3.3E-14 92.3 13.5 112 400-523 3-117 (119)
49 KOG1126 DNA-binding cell divis 99.1 4.2E-10 9E-15 116.7 9.0 135 400-534 422-575 (638)
50 KOG0547 Translocase of outer m 99.1 2.2E-09 4.7E-14 107.4 13.5 137 396-548 323-459 (606)
51 KOG0624 dsRNA-activated protei 99.0 1.2E-09 2.6E-14 104.7 10.8 114 397-525 36-149 (504)
52 KOG0624 dsRNA-activated protei 99.0 1.6E-09 3.5E-14 103.8 11.3 129 393-532 263-391 (504)
53 PRK02603 photosystem I assembl 99.0 4.1E-09 8.8E-14 96.5 13.1 110 394-515 30-153 (172)
54 PF13432 TPR_16: Tetratricopep 99.0 1.4E-09 3.1E-14 82.0 7.7 65 452-516 1-65 (65)
55 PRK15331 chaperone protein Sic 99.0 4.9E-09 1.1E-13 91.9 12.1 107 399-521 37-143 (165)
56 PRK09782 bacteriophage N4 rece 99.0 6E-09 1.3E-13 118.5 15.4 122 400-536 610-731 (987)
57 PRK15359 type III secretion sy 99.0 5.5E-09 1.2E-13 92.4 12.0 107 420-545 14-120 (144)
58 KOG4555 TPR repeat-containing 99.0 2.6E-08 5.6E-13 82.6 14.8 118 391-525 35-156 (175)
59 PF12895 Apc3: Anaphase-promot 99.0 1.7E-09 3.8E-14 86.2 7.6 83 412-508 2-84 (84)
60 PRK15179 Vi polysaccharide bio 99.0 6.7E-09 1.5E-13 113.8 14.2 137 398-550 85-221 (694)
61 KOG1308 Hsp70-interacting prot 99.0 5.7E-10 1.2E-14 107.3 4.8 111 389-514 104-214 (377)
62 cd00189 TPR Tetratricopeptide 98.9 5E-09 1.1E-13 84.0 9.6 99 401-514 2-100 (100)
63 PRK10370 formate-dependent nit 98.9 1.1E-08 2.3E-13 95.6 13.0 122 412-549 52-176 (198)
64 KOG1155 Anaphase-promoting com 98.9 9.2E-09 2E-13 102.5 12.5 124 405-544 336-459 (559)
65 KOG1173 Anaphase-promoting com 98.9 1.8E-08 3.9E-13 102.8 14.8 124 405-528 386-535 (611)
66 KOG1155 Anaphase-promoting com 98.9 1.9E-08 4.2E-13 100.2 14.6 134 398-547 363-496 (559)
67 TIGR00115 tig trigger factor. 98.9 1.5E-09 3.2E-14 113.5 6.4 137 10-159 102-245 (408)
68 TIGR03302 OM_YfiO outer membra 98.9 5.2E-08 1.1E-12 94.0 16.6 113 398-522 32-155 (235)
69 COG0544 Tig FKBP-type peptidyl 98.9 1.6E-09 3.5E-14 111.9 5.8 146 6-161 110-258 (441)
70 CHL00033 ycf3 photosystem I as 98.9 4.8E-08 1E-12 89.0 14.9 110 395-516 31-154 (168)
71 COG3063 PilF Tfp pilus assembl 98.9 3.6E-08 7.8E-13 90.3 13.3 132 394-525 30-182 (250)
72 PF13414 TPR_11: TPR repeat; P 98.9 2.7E-09 5.8E-14 81.5 5.2 66 399-479 3-69 (69)
73 PRK09782 bacteriophage N4 rece 98.9 2.3E-08 5.1E-13 113.8 15.0 99 449-548 610-708 (987)
74 PRK12370 invasion protein regu 98.9 2.4E-08 5.2E-13 108.6 14.4 108 404-526 343-451 (553)
75 COG5010 TadD Flp pilus assembl 98.9 2.6E-08 5.6E-13 93.1 12.5 121 401-536 102-222 (257)
76 KOG0553 TPR repeat-containing 98.9 1.6E-08 3.5E-13 96.2 11.1 91 453-544 86-176 (304)
77 PRK12370 invasion protein regu 98.9 2.4E-08 5.2E-13 108.6 13.9 95 412-521 317-411 (553)
78 TIGR02521 type_IV_pilW type IV 98.9 5.5E-08 1.2E-12 92.5 14.8 86 449-534 136-221 (234)
79 TIGR02521 type_IV_pilW type IV 98.9 6.2E-08 1.3E-12 92.1 14.9 95 450-545 101-197 (234)
80 PF13371 TPR_9: Tetratricopept 98.8 1.4E-08 2.9E-13 78.5 7.9 72 454-525 1-72 (73)
81 PRK01490 tig trigger factor; P 98.8 5E-09 1.1E-13 110.4 7.0 99 52-158 157-255 (435)
82 PRK11189 lipoprotein NlpI; Pro 98.8 5.3E-08 1.1E-12 97.3 13.9 112 413-535 40-151 (296)
83 TIGR02552 LcrH_SycD type III s 98.8 3E-08 6.5E-13 86.7 10.3 95 451-546 20-114 (135)
84 PRK10866 outer membrane biogen 98.8 3.3E-07 7.2E-12 88.4 17.5 130 399-540 32-185 (243)
85 PRK10803 tol-pal system protei 98.8 1.5E-07 3.2E-12 91.4 15.1 114 400-525 143-260 (263)
86 KOG1126 DNA-binding cell divis 98.8 4.2E-08 9.1E-13 102.1 11.8 124 398-536 488-611 (638)
87 KOG1125 TPR repeat-containing 98.8 1.3E-08 2.8E-13 104.2 7.5 98 402-514 433-530 (579)
88 PRK15174 Vi polysaccharide exp 98.8 6.2E-08 1.3E-12 107.3 13.5 115 405-534 218-336 (656)
89 PF13525 YfiO: Outer membrane 98.7 3.6E-07 7.9E-12 85.9 15.7 130 399-540 5-151 (203)
90 PRK15174 Vi polysaccharide exp 98.7 1.1E-07 2.5E-12 105.2 14.2 116 399-529 246-365 (656)
91 PF13512 TPR_18: Tetratricopep 98.7 2.5E-07 5.4E-12 79.6 13.0 109 399-519 10-136 (142)
92 COG3063 PilF Tfp pilus assembl 98.7 1.9E-07 4.1E-12 85.6 12.8 138 398-550 102-239 (250)
93 PF14559 TPR_19: Tetratricopep 98.7 3E-08 6.4E-13 75.4 6.4 67 459-525 2-68 (68)
94 PF13429 TPR_15: Tetratricopep 98.7 4.6E-08 1E-12 97.0 9.0 132 399-546 146-277 (280)
95 KOG0550 Molecular chaperone (D 98.7 1.7E-07 3.7E-12 92.4 11.9 144 398-545 202-349 (486)
96 PLN02789 farnesyltranstransfer 98.7 4E-07 8.6E-12 91.2 14.9 116 399-529 71-189 (320)
97 PRK15363 pathogenicity island 98.7 2.8E-07 6E-12 80.7 11.3 96 451-547 38-133 (157)
98 PRK11447 cellulose synthase su 98.6 6.3E-07 1.4E-11 106.0 17.6 126 399-526 303-429 (1157)
99 KOG2076 RNA polymerase III tra 98.6 7.7E-07 1.7E-11 95.7 16.4 116 398-513 138-272 (895)
100 PRK11788 tetratricopeptide rep 98.6 7.5E-07 1.6E-11 92.7 15.8 80 450-529 182-262 (389)
101 PRK11788 tetratricopeptide rep 98.6 6.6E-07 1.4E-11 93.1 15.1 120 402-522 183-322 (389)
102 PRK11447 cellulose synthase su 98.6 3.4E-07 7.3E-12 108.3 14.1 128 403-546 273-414 (1157)
103 TIGR03302 OM_YfiO outer membra 98.6 1E-06 2.2E-11 84.9 15.1 125 400-536 71-223 (235)
104 cd00189 TPR Tetratricopeptide 98.6 9.1E-07 2E-11 70.5 12.3 86 450-535 2-87 (100)
105 TIGR02917 PEP_TPR_lipo putativ 98.6 8.4E-07 1.8E-11 102.0 16.6 122 397-533 123-244 (899)
106 TIGR02917 PEP_TPR_lipo putativ 98.6 4.2E-07 9.1E-12 104.5 14.1 92 450-543 806-897 (899)
107 PRK15179 Vi polysaccharide bio 98.6 4.3E-07 9.4E-12 99.7 13.3 106 395-515 116-221 (694)
108 COG1729 Uncharacterized protei 98.6 7.3E-07 1.6E-11 84.6 13.0 114 400-525 142-258 (262)
109 KOG1310 WD40 repeat protein [G 98.6 1.1E-07 2.5E-12 96.0 7.6 125 392-531 367-494 (758)
110 PRK10049 pgaA outer membrane p 98.6 5.6E-07 1.2E-11 101.8 14.0 113 399-527 49-161 (765)
111 KOG1840 Kinesin light chain [C 98.6 1.2E-06 2.7E-11 91.8 15.2 146 396-549 238-399 (508)
112 PLN03088 SGT1, suppressor of 98.5 6.3E-07 1.4E-11 91.7 12.3 86 451-536 5-90 (356)
113 PLN02789 farnesyltranstransfer 98.5 1.1E-06 2.3E-11 88.1 13.2 121 409-545 47-170 (320)
114 KOG2002 TPR-containing nuclear 98.5 1.5E-06 3.1E-11 94.2 14.8 119 400-530 271-390 (1018)
115 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.3E-07 7.2E-12 93.0 9.3 63 449-511 76-141 (453)
116 PF13424 TPR_12: Tetratricopep 98.5 2E-07 4.4E-12 72.9 6.0 66 446-511 3-75 (78)
117 CHL00033 ycf3 photosystem I as 98.5 9.5E-07 2.1E-11 80.4 11.3 112 405-529 5-119 (168)
118 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.3E-06 5.1E-11 72.5 11.9 96 450-546 4-105 (119)
119 KOG2003 TPR repeat-containing 98.4 3.7E-07 8E-12 90.7 7.1 118 399-531 490-607 (840)
120 PF13424 TPR_12: Tetratricopep 98.4 1.4E-06 3E-11 68.2 8.9 73 397-477 3-75 (78)
121 COG4785 NlpI Lipoprotein NlpI, 98.4 8.9E-07 1.9E-11 80.2 8.6 112 387-516 56-167 (297)
122 PRK10049 pgaA outer membrane p 98.4 2.1E-06 4.5E-11 97.1 13.9 108 400-522 360-467 (765)
123 PF13432 TPR_16: Tetratricopep 98.4 2.6E-07 5.6E-12 69.5 4.5 64 404-482 2-65 (65)
124 PF14938 SNAP: Soluble NSF att 98.4 2E-06 4.3E-11 85.3 12.0 148 397-554 112-267 (282)
125 PRK02603 photosystem I assembl 98.4 3E-06 6.5E-11 77.5 11.3 84 447-530 34-120 (172)
126 KOG4162 Predicted calmodulin-b 98.4 1.5E-06 3.3E-11 92.0 10.4 103 399-516 684-788 (799)
127 PF09976 TPR_21: Tetratricopep 98.4 3.8E-06 8.3E-11 74.4 11.1 97 400-509 49-145 (145)
128 PRK14574 hmsH outer membrane p 98.4 4.2E-06 9.1E-11 93.8 13.8 150 399-550 34-202 (822)
129 KOG1128 Uncharacterized conser 98.4 1.5E-06 3.2E-11 91.6 9.4 133 399-547 485-617 (777)
130 COG4783 Putative Zn-dependent 98.4 7.2E-06 1.6E-10 83.1 13.8 130 399-543 306-435 (484)
131 KOG2002 TPR-containing nuclear 98.3 6.1E-06 1.3E-10 89.6 14.0 145 400-550 453-597 (1018)
132 PF14559 TPR_19: Tetratricopep 98.3 7E-07 1.5E-11 67.8 4.9 67 409-490 1-67 (68)
133 PF06552 TOM20_plant: Plant sp 98.3 4.7E-06 1E-10 74.0 10.4 99 415-528 7-126 (186)
134 COG5010 TadD Flp pilus assembl 98.3 4.3E-06 9.3E-11 78.4 10.1 85 453-537 105-189 (257)
135 COG4235 Cytochrome c biogenesi 98.3 9E-06 1.9E-10 78.2 12.1 116 398-528 155-273 (287)
136 KOG1840 Kinesin light chain [C 98.3 2.1E-05 4.6E-10 82.7 15.7 110 396-512 280-397 (508)
137 PF13371 TPR_9: Tetratricopept 98.3 4.4E-06 9.6E-11 64.3 8.0 70 406-490 2-71 (73)
138 TIGR00115 tig trigger factor. 98.3 2.9E-06 6.4E-11 88.7 9.0 84 168-262 146-231 (408)
139 PF12968 DUF3856: Domain of Un 98.2 6.4E-05 1.4E-09 61.6 14.0 108 401-511 11-129 (144)
140 KOG1125 TPR repeat-containing 98.2 9.5E-06 2E-10 83.7 11.4 89 448-536 430-518 (579)
141 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.8E-06 1.3E-10 84.1 9.7 73 394-478 70-142 (453)
142 PF12688 TPR_5: Tetratrico pep 98.2 2.3E-05 5.1E-10 66.3 11.8 98 401-510 3-103 (120)
143 KOG1129 TPR repeat-containing 98.2 2.9E-06 6.3E-11 81.4 6.7 86 449-534 359-447 (478)
144 PRK14720 transcript cleavage f 98.2 3.4E-05 7.5E-10 85.9 14.9 129 400-546 32-178 (906)
145 PF00515 TPR_1: Tetratricopept 98.1 3.7E-06 8E-11 54.1 4.3 34 482-515 1-34 (34)
146 COG4783 Putative Zn-dependent 98.1 2.7E-05 5.8E-10 79.1 12.2 112 403-529 344-455 (484)
147 cd05804 StaR_like StaR_like; a 98.1 6E-05 1.3E-09 77.4 15.2 135 401-535 45-205 (355)
148 KOG4151 Myosin assembly protei 98.1 8.7E-06 1.9E-10 87.0 9.0 129 390-529 44-174 (748)
149 PF12895 Apc3: Anaphase-promot 98.1 4.9E-06 1.1E-10 66.1 5.5 76 461-537 2-79 (84)
150 PRK01490 tig trigger factor; P 98.1 1.5E-05 3.3E-10 84.0 10.6 84 168-262 157-242 (435)
151 COG2956 Predicted N-acetylgluc 98.1 7.4E-05 1.6E-09 72.0 13.9 146 388-536 99-269 (389)
152 PRK10153 DNA-binding transcrip 98.1 4.1E-05 8.9E-10 81.8 13.8 118 399-517 339-488 (517)
153 KOG3060 Uncharacterized conser 98.1 0.00014 3.1E-09 67.9 15.3 123 403-525 90-234 (289)
154 PF13429 TPR_15: Tetratricopep 98.1 1.2E-05 2.7E-10 79.6 8.9 131 401-545 112-242 (280)
155 PRK14574 hmsH outer membrane p 98.1 3.9E-05 8.4E-10 86.2 13.4 113 406-534 109-221 (822)
156 PF03704 BTAD: Bacterial trans 98.1 0.00016 3.4E-09 64.0 14.8 111 400-510 7-124 (146)
157 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.8E-09 63.0 15.6 135 394-542 6-143 (145)
158 KOG2076 RNA polymerase III tra 98.0 8.7E-05 1.9E-09 80.3 14.9 132 400-548 208-344 (895)
159 PRK10747 putative protoheme IX 98.0 0.00017 3.7E-09 75.2 16.5 126 394-534 79-205 (398)
160 KOG1129 TPR repeat-containing 98.0 1.7E-05 3.7E-10 76.3 7.9 100 403-518 227-326 (478)
161 PRK10803 tol-pal system protei 98.0 6.4E-05 1.4E-09 73.1 12.0 98 449-547 143-247 (263)
162 TIGR00540 hemY_coli hemY prote 98.0 7.9E-05 1.7E-09 78.1 13.5 138 397-549 261-402 (409)
163 TIGR00540 hemY_coli hemY prote 98.0 0.00015 3.4E-09 75.9 15.6 121 395-530 80-201 (409)
164 PF07719 TPR_2: Tetratricopept 98.0 1.4E-05 3.1E-10 51.2 5.0 34 482-515 1-34 (34)
165 PF13431 TPR_17: Tetratricopep 98.0 7.4E-06 1.6E-10 52.5 3.2 34 470-503 1-34 (34)
166 PF15015 NYD-SP12_N: Spermatog 98.0 8.4E-05 1.8E-09 73.8 12.0 112 399-510 176-290 (569)
167 cd05804 StaR_like StaR_like; a 98.0 5.6E-05 1.2E-09 77.6 11.5 99 400-513 115-217 (355)
168 KOG1156 N-terminal acetyltrans 98.0 6.6E-05 1.4E-09 78.4 11.7 118 401-533 9-126 (700)
169 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 5.7E-05 1.2E-09 53.5 7.5 49 483-531 2-50 (53)
170 COG4105 ComL DNA uptake lipopr 97.9 0.00067 1.5E-08 64.1 16.8 126 399-536 34-173 (254)
171 COG0544 Tig FKBP-type peptidyl 97.9 2.1E-05 4.5E-10 81.7 7.1 81 169-262 158-242 (441)
172 KOG4234 TPR repeat-containing 97.9 0.00023 5E-09 64.0 12.4 91 454-545 101-196 (271)
173 PF13428 TPR_14: Tetratricopep 97.9 3.1E-05 6.7E-10 53.0 5.5 42 483-524 2-43 (44)
174 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 5E-05 1.1E-09 77.8 9.3 96 405-515 206-301 (395)
175 KOG1586 Protein required for f 97.9 0.00041 8.9E-09 64.0 14.0 145 400-554 114-266 (288)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.00025 5.4E-09 60.1 11.7 85 450-534 3-93 (120)
177 KOG4648 Uncharacterized conser 97.9 4.4E-05 9.5E-10 73.9 7.6 63 453-515 102-164 (536)
178 KOG0545 Aryl-hydrocarbon recep 97.8 7.4E-06 1.6E-10 75.6 1.9 81 34-115 7-91 (329)
179 COG2956 Predicted N-acetylgluc 97.8 0.00028 6E-09 68.2 12.4 137 396-533 66-231 (389)
180 KOG1174 Anaphase-promoting com 97.8 0.00044 9.4E-09 68.8 14.0 137 399-535 232-387 (564)
181 PF00515 TPR_1: Tetratricopept 97.8 2.4E-05 5.3E-10 50.2 3.6 33 449-481 2-34 (34)
182 PF14938 SNAP: Soluble NSF att 97.8 0.0002 4.3E-09 71.0 11.8 139 396-545 32-183 (282)
183 KOG1174 Anaphase-promoting com 97.8 0.00024 5.1E-09 70.6 11.8 34 398-431 333-366 (564)
184 PRK11906 transcriptional regul 97.8 0.0002 4.4E-09 73.2 11.5 100 414-525 273-381 (458)
185 PRK10747 putative protoheme IX 97.8 0.00046 1E-08 72.0 14.3 128 398-545 262-389 (398)
186 KOG1173 Anaphase-promoting com 97.7 0.00017 3.7E-09 74.4 9.9 130 399-544 312-441 (611)
187 KOG1130 Predicted G-alpha GTPa 97.7 4.5E-05 9.7E-10 75.5 5.5 111 393-512 189-305 (639)
188 PF12569 NARP1: NMDA receptor- 97.7 0.0003 6.4E-09 74.9 11.7 78 447-524 193-270 (517)
189 KOG4162 Predicted calmodulin-b 97.7 0.00026 5.6E-09 75.5 11.0 116 405-535 656-773 (799)
190 COG4700 Uncharacterized protei 97.7 0.00074 1.6E-08 60.2 12.1 116 399-529 89-206 (251)
191 COG4235 Cytochrome c biogenesi 97.7 0.0013 2.8E-08 63.6 14.2 118 415-548 138-258 (287)
192 KOG1128 Uncharacterized conser 97.6 0.00051 1.1E-08 73.0 12.1 84 452-535 489-572 (777)
193 KOG1127 TPR repeat-containing 97.6 0.00037 8.1E-09 76.2 10.6 137 399-535 492-649 (1238)
194 PRK14720 transcript cleavage f 97.6 0.00051 1.1E-08 76.8 12.0 113 400-527 117-268 (906)
195 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.7E-09 50.0 4.7 42 450-491 3-44 (44)
196 PF13181 TPR_8: Tetratricopept 97.6 0.00011 2.5E-09 46.9 4.2 33 483-515 2-34 (34)
197 PF04733 Coatomer_E: Coatomer 97.6 0.00024 5.3E-09 70.3 8.4 108 408-532 140-251 (290)
198 KOG4642 Chaperone-dependent E3 97.6 0.0001 2.2E-09 68.1 5.1 77 454-530 16-92 (284)
199 KOG4555 TPR repeat-containing 97.6 0.00066 1.4E-08 56.9 9.4 61 454-514 49-109 (175)
200 KOG1127 TPR repeat-containing 97.5 0.00069 1.5E-08 74.2 11.7 72 457-528 11-83 (1238)
201 PRK10941 hypothetical protein; 97.5 0.00095 2.1E-08 64.9 11.7 81 445-525 178-258 (269)
202 KOG2003 TPR repeat-containing 97.5 0.001 2.2E-08 66.8 11.9 136 397-532 556-710 (840)
203 COG1729 Uncharacterized protei 97.5 0.0011 2.4E-08 63.2 11.5 96 451-547 144-245 (262)
204 PF07719 TPR_2: Tetratricopept 97.5 0.00018 3.9E-09 45.9 4.3 33 449-481 2-34 (34)
205 PF13525 YfiO: Outer membrane 97.5 0.0057 1.2E-07 57.4 16.1 114 400-525 43-184 (203)
206 PRK15331 chaperone protein Sic 97.4 0.00078 1.7E-08 59.5 8.7 83 451-533 40-122 (165)
207 KOG0495 HAT repeat protein [RN 97.4 0.0018 3.9E-08 68.1 12.3 102 447-549 684-785 (913)
208 PF13512 TPR_18: Tetratricopep 97.4 0.0023 5E-08 55.3 10.9 68 451-518 13-83 (142)
209 KOG4507 Uncharacterized conser 97.4 0.00047 1E-08 71.3 7.8 108 406-527 614-721 (886)
210 KOG4814 Uncharacterized conser 97.4 0.002 4.3E-08 67.5 12.0 105 398-511 353-457 (872)
211 PRK10866 outer membrane biogen 97.3 0.001 2.2E-08 64.2 9.3 69 451-519 35-106 (243)
212 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0028 6.1E-08 65.1 12.7 107 412-536 182-288 (395)
213 KOG3364 Membrane protein invol 97.3 0.002 4.3E-08 54.4 9.3 85 447-531 31-120 (149)
214 KOG3060 Uncharacterized conser 97.3 0.0063 1.4E-07 57.2 13.5 70 461-530 133-202 (289)
215 PRK11906 transcriptional regul 97.3 0.00089 1.9E-08 68.6 8.7 88 414-516 319-406 (458)
216 KOG3785 Uncharacterized conser 97.3 0.0014 3.1E-08 64.0 9.5 104 408-529 31-134 (557)
217 KOG2796 Uncharacterized conser 97.3 0.0075 1.6E-07 56.9 13.7 70 447-516 251-320 (366)
218 PF04733 Coatomer_E: Coatomer 97.2 0.00073 1.6E-08 66.9 7.0 92 413-519 181-273 (290)
219 KOG1130 Predicted G-alpha GTPa 97.2 0.0024 5.2E-08 63.7 10.1 103 400-511 236-344 (639)
220 KOG3785 Uncharacterized conser 97.2 0.02 4.4E-07 56.2 16.0 72 452-523 155-226 (557)
221 KOG1156 N-terminal acetyltrans 97.2 0.0039 8.4E-08 65.7 11.5 96 402-512 78-173 (700)
222 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0015 3.1E-08 46.4 5.7 40 450-489 3-42 (53)
223 KOG1941 Acetylcholine receptor 97.1 0.0023 5.1E-08 62.7 8.3 137 398-534 5-180 (518)
224 KOG1308 Hsp70-interacting prot 97.0 0.00031 6.7E-09 68.4 2.3 75 455-529 121-195 (377)
225 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0097 2.1E-07 58.0 12.0 79 451-529 84-166 (390)
226 KOG4340 Uncharacterized conser 97.0 0.0017 3.8E-08 62.0 6.8 94 398-506 143-265 (459)
227 KOG0495 HAT repeat protein [RN 96.9 0.014 3.1E-07 61.6 13.2 127 404-530 589-733 (913)
228 PF13174 TPR_6: Tetratricopept 96.9 0.0015 3.3E-08 41.2 4.0 32 484-515 2-33 (33)
229 PF06552 TOM20_plant: Plant sp 96.9 0.0081 1.8E-07 53.8 9.7 69 463-531 6-84 (186)
230 COG4785 NlpI Lipoprotein NlpI, 96.9 0.003 6.5E-08 57.8 7.0 71 446-516 63-133 (297)
231 PF13181 TPR_8: Tetratricopept 96.9 0.0013 2.7E-08 42.0 3.5 33 449-481 2-34 (34)
232 KOG0376 Serine-threonine phosp 96.8 0.0012 2.6E-08 67.4 4.6 64 452-515 8-71 (476)
233 PF10300 DUF3808: Protein of u 96.8 0.012 2.7E-07 62.4 12.1 103 399-513 267-378 (468)
234 KOG1941 Acetylcholine receptor 96.8 0.0085 1.8E-07 58.9 9.4 101 402-511 125-235 (518)
235 PF13176 TPR_7: Tetratricopept 96.7 0.0012 2.6E-08 42.8 2.5 28 484-511 1-28 (36)
236 COG3071 HemY Uncharacterized e 96.7 0.04 8.7E-07 55.1 13.7 127 392-533 77-204 (400)
237 smart00028 TPR Tetratricopepti 96.7 0.003 6.5E-08 38.8 4.0 32 483-514 2-33 (34)
238 COG2976 Uncharacterized protei 96.7 0.035 7.6E-07 50.3 11.9 101 400-515 90-192 (207)
239 PF09986 DUF2225: Uncharacteri 96.7 0.045 9.8E-07 51.6 13.4 102 406-515 84-198 (214)
240 PF12569 NARP1: NMDA receptor- 96.6 0.019 4.1E-07 61.3 11.9 76 451-526 7-82 (517)
241 KOG3081 Vesicle coat complex C 96.6 0.036 7.8E-07 52.6 11.9 131 402-532 111-257 (299)
242 COG4105 ComL DNA uptake lipopr 96.6 0.014 3E-07 55.4 9.3 70 451-520 37-109 (254)
243 KOG2376 Signal recognition par 96.5 0.034 7.4E-07 58.2 12.2 116 400-518 13-146 (652)
244 KOG1586 Protein required for f 96.4 0.038 8.1E-07 51.4 10.9 111 397-517 72-189 (288)
245 PRK10153 DNA-binding transcrip 96.4 0.042 9.2E-07 59.0 12.9 128 416-545 337-481 (517)
246 PF13431 TPR_17: Tetratricopep 96.3 0.0015 3.3E-08 41.7 1.0 33 421-468 1-33 (34)
247 KOG2376 Signal recognition par 96.3 0.04 8.6E-07 57.7 11.6 68 403-488 83-150 (652)
248 COG0457 NrfG FOG: TPR repeat [ 96.3 0.14 3.1E-06 47.1 14.7 57 458-514 177-234 (291)
249 KOG3824 Huntingtin interacting 96.2 0.029 6.2E-07 54.1 9.3 74 451-524 119-192 (472)
250 PF13176 TPR_7: Tetratricopept 96.2 0.0055 1.2E-07 39.7 3.2 28 450-477 1-28 (36)
251 PF13174 TPR_6: Tetratricopept 96.1 0.007 1.5E-07 38.0 3.2 32 450-481 2-33 (33)
252 COG3118 Thioredoxin domain-con 96.1 0.24 5.2E-06 48.1 14.8 116 400-530 135-286 (304)
253 KOG2471 TPR repeat-containing 96.1 0.017 3.6E-07 59.0 7.4 120 400-525 241-378 (696)
254 PF08631 SPO22: Meiosis protei 96.1 0.39 8.5E-06 47.4 17.2 124 389-513 25-152 (278)
255 COG0457 NrfG FOG: TPR repeat [ 96.1 0.064 1.4E-06 49.5 11.2 66 449-514 203-268 (291)
256 smart00028 TPR Tetratricopepti 96.0 0.012 2.7E-07 35.8 4.2 32 450-481 3-34 (34)
257 KOG1585 Protein required for f 96.0 0.092 2E-06 49.3 11.1 131 404-545 115-251 (308)
258 COG2912 Uncharacterized conser 96.0 0.066 1.4E-06 51.4 10.4 76 445-520 178-253 (269)
259 PF10602 RPN7: 26S proteasome 95.8 0.13 2.8E-06 47.0 11.3 102 398-511 35-142 (177)
260 KOG1915 Cell cycle control pro 95.8 0.2 4.3E-06 51.4 13.2 91 410-511 377-500 (677)
261 KOG1585 Protein required for f 95.7 0.74 1.6E-05 43.4 15.5 126 401-535 33-169 (308)
262 PLN03081 pentatricopeptide (PP 95.6 0.071 1.5E-06 60.1 11.0 63 449-511 495-557 (697)
263 KOG2396 HAT (Half-A-TPR) repea 95.6 0.18 4E-06 52.0 12.5 96 417-527 89-185 (568)
264 PF10952 DUF2753: Protein of u 95.6 0.11 2.4E-06 43.2 8.8 81 401-481 3-87 (140)
265 PRK04841 transcriptional regul 95.5 0.15 3.3E-06 59.4 13.3 101 403-512 495-603 (903)
266 KOG4507 Uncharacterized conser 95.4 0.09 2E-06 55.0 9.7 129 402-543 215-347 (886)
267 PF04781 DUF627: Protein of un 95.4 0.17 3.6E-06 41.7 9.4 103 405-512 2-108 (111)
268 PF14561 TPR_20: Tetratricopep 95.4 0.16 3.6E-06 40.5 9.2 66 467-532 7-74 (90)
269 KOG1915 Cell cycle control pro 95.3 0.42 9.1E-06 49.1 13.6 102 400-516 74-175 (677)
270 COG4976 Predicted methyltransf 95.3 0.027 5.8E-07 52.2 4.8 60 457-516 4-63 (287)
271 PLN03081 pentatricopeptide (PP 95.3 0.23 4.9E-06 56.1 13.3 144 400-546 392-557 (697)
272 PLN03218 maturation of RBCL 1; 95.1 0.37 8E-06 56.4 14.7 62 450-511 581-643 (1060)
273 COG3629 DnrI DNA-binding trans 95.1 0.1 2.3E-06 50.7 8.6 74 438-511 143-216 (280)
274 KOG4340 Uncharacterized conser 95.1 0.24 5.3E-06 47.8 10.8 130 401-534 46-196 (459)
275 PF04184 ST7: ST7 protein; In 95.1 0.26 5.6E-06 51.1 11.6 129 390-518 182-332 (539)
276 PF05843 Suf: Suppressor of fo 95.0 0.23 5E-06 49.0 11.1 127 405-547 7-137 (280)
277 PLN03218 maturation of RBCL 1; 95.0 0.44 9.6E-06 55.7 14.8 60 451-510 652-712 (1060)
278 PRK04841 transcriptional regul 94.9 0.18 3.9E-06 58.7 11.7 100 402-511 455-560 (903)
279 PF10579 Rapsyn_N: Rapsyn N-te 94.9 0.18 3.9E-06 38.6 7.5 67 398-476 5-71 (80)
280 PF13374 TPR_10: Tetratricopep 94.9 0.04 8.6E-07 36.5 3.8 29 449-477 3-31 (42)
281 COG3947 Response regulator con 94.9 0.29 6.2E-06 47.2 10.6 75 435-509 266-340 (361)
282 KOG2053 Mitochondrial inherita 94.9 0.35 7.7E-06 53.3 12.5 113 409-537 19-131 (932)
283 PF02259 FAT: FAT domain; Int 94.8 0.5 1.1E-05 48.1 13.4 115 401-515 186-342 (352)
284 PF06957 COPI_C: Coatomer (COP 94.7 0.71 1.5E-05 47.7 13.6 123 395-517 200-335 (422)
285 COG4700 Uncharacterized protei 94.4 0.47 1E-05 42.8 10.1 83 451-533 92-177 (251)
286 KOG3824 Huntingtin interacting 94.4 0.087 1.9E-06 50.9 5.9 84 395-493 112-195 (472)
287 KOG3081 Vesicle coat complex C 94.4 0.83 1.8E-05 43.7 12.2 92 412-518 186-278 (299)
288 KOG2610 Uncharacterized conser 94.3 0.76 1.6E-05 45.3 12.1 33 400-432 104-136 (491)
289 KOG4814 Uncharacterized conser 94.3 0.35 7.6E-06 51.4 10.5 76 447-522 353-434 (872)
290 PF03704 BTAD: Bacterial trans 94.3 0.76 1.6E-05 40.2 11.6 90 455-545 13-124 (146)
291 COG3071 HemY Uncharacterized e 94.1 0.58 1.3E-05 47.1 11.3 112 399-529 263-374 (400)
292 PLN03077 Protein ECB2; Provisi 94.1 0.59 1.3E-05 54.1 13.2 141 401-544 556-718 (857)
293 PF04184 ST7: ST7 protein; In 94.0 0.61 1.3E-05 48.5 11.4 127 407-534 176-313 (539)
294 KOG2300 Uncharacterized conser 94.0 1.5 3.3E-05 45.3 14.0 102 395-512 363-475 (629)
295 PLN03077 Protein ECB2; Provisi 93.9 0.53 1.1E-05 54.5 12.4 82 450-531 659-766 (857)
296 PF13374 TPR_10: Tetratricopep 93.7 0.15 3.2E-06 33.6 4.5 30 482-511 2-31 (42)
297 PF12862 Apc5: Anaphase-promot 93.6 0.43 9.3E-06 38.5 7.9 64 408-477 7-70 (94)
298 COG2976 Uncharacterized protei 93.5 3.6 7.9E-05 37.6 14.1 104 406-509 38-153 (207)
299 PF10300 DUF3808: Protein of u 93.5 0.69 1.5E-05 49.3 11.5 94 414-522 248-345 (468)
300 KOG1070 rRNA processing protei 93.1 1.8 3.9E-05 50.3 14.1 77 449-525 1531-1609(1710)
301 KOG0686 COP9 signalosome, subu 93.1 0.35 7.7E-06 48.7 7.7 97 401-509 152-256 (466)
302 KOG3364 Membrane protein invol 93.0 0.39 8.5E-06 40.9 6.8 41 448-488 71-111 (149)
303 PF08631 SPO22: Meiosis protei 93.0 3 6.4E-05 41.1 14.3 104 409-519 3-124 (278)
304 cd02681 MIT_calpain7_1 MIT: do 92.5 1 2.3E-05 34.6 8.0 35 397-431 4-38 (76)
305 PF12862 Apc5: Anaphase-promot 92.4 0.49 1.1E-05 38.1 6.6 58 457-514 7-73 (94)
306 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.27 5.8E-06 32.1 3.9 29 483-511 2-30 (38)
307 cd02683 MIT_1 MIT: domain cont 91.9 1.1 2.3E-05 34.6 7.6 35 397-431 4-38 (77)
308 PF07079 DUF1347: Protein of u 91.8 3.8 8.2E-05 42.2 13.2 75 453-531 467-545 (549)
309 cd02682 MIT_AAA_Arch MIT: doma 91.7 2 4.2E-05 32.9 8.5 36 396-431 3-38 (75)
310 COG5191 Uncharacterized conser 91.6 0.44 9.4E-06 46.4 6.1 76 450-525 109-185 (435)
311 KOG2053 Mitochondrial inherita 91.4 1.2 2.5E-05 49.4 9.8 88 460-548 21-108 (932)
312 PF05843 Suf: Suppressor of fo 91.4 2.1 4.6E-05 42.3 11.1 96 451-547 4-100 (280)
313 PF10602 RPN7: 26S proteasome 91.3 6.7 0.00015 35.7 13.5 76 448-523 36-116 (177)
314 PRK10941 hypothetical protein; 91.1 1.4 3.1E-05 43.0 9.4 78 400-492 182-259 (269)
315 KOG2796 Uncharacterized conser 91.1 4.7 0.0001 38.6 12.1 109 403-525 181-295 (366)
316 KOG1070 rRNA processing protei 91.1 2.7 5.8E-05 49.0 12.4 81 448-528 1564-1646(1710)
317 PRK13184 pknD serine/threonine 90.9 2.7 5.8E-05 48.3 12.6 120 404-529 480-599 (932)
318 KOG2471 TPR repeat-containing 90.9 0.23 5E-06 51.1 3.7 96 398-495 282-382 (696)
319 TIGR03504 FimV_Cterm FimV C-te 90.8 0.84 1.8E-05 30.9 5.2 25 486-510 3-27 (44)
320 KOG2422 Uncharacterized conser 90.8 3.4 7.5E-05 43.7 12.0 116 326-480 256-374 (665)
321 PF09613 HrpB1_HrpK: Bacterial 90.8 3 6.4E-05 37.0 10.1 80 451-530 13-92 (160)
322 PF07720 TPR_3: Tetratricopept 90.3 0.93 2E-05 29.2 4.9 33 483-515 2-36 (36)
323 KOG2300 Uncharacterized conser 90.2 3.1 6.7E-05 43.1 10.9 100 398-505 45-150 (629)
324 cd02677 MIT_SNX15 MIT: domain 90.1 2.3 5.1E-05 32.6 7.9 60 396-455 3-63 (75)
325 cd02684 MIT_2 MIT: domain cont 90.1 1.9 4.1E-05 33.1 7.3 36 396-431 3-38 (75)
326 PF04212 MIT: MIT (microtubule 89.8 2.8 6E-05 31.5 8.0 36 396-431 2-37 (69)
327 cd02678 MIT_VPS4 MIT: domain c 89.6 2.4 5.1E-05 32.5 7.6 36 396-431 3-38 (75)
328 KOG0292 Vesicle coat complex C 89.5 6 0.00013 44.0 13.0 123 396-518 988-1120(1202)
329 PF02259 FAT: FAT domain; Int 89.5 6.7 0.00015 39.7 13.4 126 397-533 144-309 (352)
330 COG4976 Predicted methyltransf 89.4 0.49 1.1E-05 44.1 4.2 60 407-481 3-62 (287)
331 cd02679 MIT_spastin MIT: domai 89.0 3.9 8.6E-05 31.6 8.3 66 396-461 5-76 (79)
332 PF04910 Tcf25: Transcriptiona 88.9 4.8 0.0001 41.3 11.5 81 399-480 40-135 (360)
333 PF11817 Foie-gras_1: Foie gra 88.7 2.3 5E-05 41.1 8.7 66 402-476 181-246 (247)
334 cd02656 MIT MIT: domain contai 88.6 3.7 7.9E-05 31.4 8.1 36 396-431 3-38 (75)
335 KOG1550 Extracellular protein 88.6 4.9 0.00011 43.9 12.0 92 402-512 291-394 (552)
336 PF07721 TPR_4: Tetratricopept 88.5 0.67 1.5E-05 27.3 3.0 24 483-506 2-25 (26)
337 KOG2114 Vacuolar assembly/sort 88.5 6.8 0.00015 43.4 12.5 34 398-431 367-400 (933)
338 KOG2610 Uncharacterized conser 88.4 3 6.5E-05 41.3 8.9 91 402-503 140-230 (491)
339 KOG1497 COP9 signalosome, subu 87.9 15 0.00032 36.3 13.2 91 445-536 100-200 (399)
340 PF13281 DUF4071: Domain of un 87.7 16 0.00034 37.4 14.1 42 484-525 307-348 (374)
341 PF10255 Paf67: RNA polymerase 87.5 2.2 4.8E-05 44.0 8.0 102 446-548 162-268 (404)
342 PF04910 Tcf25: Transcriptiona 87.4 3.2 6.8E-05 42.6 9.1 102 412-516 7-138 (360)
343 cd02680 MIT_calpain7_2 MIT: do 87.1 3.6 7.9E-05 31.5 7.0 35 397-431 4-38 (75)
344 PF12968 DUF3856: Domain of Un 86.6 7.7 0.00017 32.5 9.0 75 399-477 55-129 (144)
345 PHA02537 M terminase endonucle 86.4 8.6 0.00019 36.5 10.7 119 409-531 93-226 (230)
346 PF09986 DUF2225: Uncharacteri 86.4 5.6 0.00012 37.5 9.5 85 398-491 124-209 (214)
347 PF10345 Cohesin_load: Cohesin 86.3 23 0.00049 39.3 15.8 108 399-506 301-428 (608)
348 PF10345 Cohesin_load: Cohesin 86.1 17 0.00037 40.3 14.7 114 398-521 58-180 (608)
349 smart00745 MIT Microtubule Int 85.6 9.3 0.0002 29.2 9.0 36 396-431 5-40 (77)
350 KOG1839 Uncharacterized protei 85.6 5.3 0.00012 46.5 10.3 109 397-512 971-1087(1236)
351 PF10516 SHNi-TPR: SHNi-TPR; 85.3 1.4 3E-05 28.8 3.4 29 450-478 3-31 (38)
352 COG4455 ImpE Protein of avirul 85.1 8.3 0.00018 36.0 9.5 74 456-529 9-82 (273)
353 KOG2047 mRNA splicing factor [ 84.1 35 0.00076 37.1 14.7 123 402-536 390-531 (835)
354 KOG2561 Adaptor protein NUB1, 83.7 56 0.0012 33.8 15.3 113 394-510 158-295 (568)
355 KOG0529 Protein geranylgeranyl 83.1 19 0.00041 36.9 11.9 89 458-546 85-178 (421)
356 PF15015 NYD-SP12_N: Spermatog 82.8 8.1 0.00018 39.5 9.1 78 462-539 197-285 (569)
357 COG0790 FOG: TPR repeat, SEL1 82.8 28 0.0006 34.3 13.4 97 401-513 111-222 (292)
358 PF10373 EST1_DNA_bind: Est1 D 82.7 3.5 7.7E-05 40.3 6.9 62 418-494 1-62 (278)
359 PF10373 EST1_DNA_bind: Est1 D 82.7 4.2 9.1E-05 39.8 7.4 62 467-528 1-62 (278)
360 PF08424 NRDE-2: NRDE-2, neces 82.6 26 0.00057 35.2 13.2 85 464-548 47-133 (321)
361 KOG2581 26S proteasome regulat 82.3 5.7 0.00012 40.4 7.8 68 449-516 210-281 (493)
362 KOG3617 WD40 and TPR repeat-co 81.5 9.1 0.0002 42.5 9.5 104 407-510 808-940 (1416)
363 PF04781 DUF627: Protein of un 81.4 21 0.00045 29.6 9.5 63 454-516 2-78 (111)
364 PF09205 DUF1955: Domain of un 81.3 14 0.0003 31.7 8.6 61 451-511 88-149 (161)
365 TIGR02561 HrpB1_HrpK type III 81.3 15 0.00033 32.1 9.1 79 452-530 14-92 (153)
366 PRK15180 Vi polysaccharide bio 81.3 13 0.00027 38.8 9.9 99 406-519 296-394 (831)
367 COG3898 Uncharacterized membra 80.9 24 0.00053 35.9 11.5 105 410-523 199-303 (531)
368 PF07721 TPR_4: Tetratricopept 80.9 2.1 4.5E-05 25.2 2.7 23 450-472 3-25 (26)
369 PF11817 Foie-gras_1: Foie gra 80.6 16 0.00035 35.2 10.4 85 415-508 154-244 (247)
370 PF14863 Alkyl_sulf_dimr: Alky 80.5 9.3 0.0002 33.3 7.7 44 453-496 75-118 (141)
371 PF09613 HrpB1_HrpK: Bacterial 80.2 43 0.00093 29.8 14.1 112 398-527 9-121 (160)
372 PF14863 Alkyl_sulf_dimr: Alky 80.0 4.2 9.2E-05 35.4 5.5 54 480-533 68-121 (141)
373 COG3914 Spy Predicted O-linked 79.2 23 0.0005 37.9 11.4 77 448-524 101-184 (620)
374 COG0790 FOG: TPR repeat, SEL1 78.5 23 0.0005 34.9 11.1 80 416-515 172-270 (292)
375 PF13281 DUF4071: Domain of un 78.4 17 0.00038 37.1 10.1 82 450-531 143-232 (374)
376 COG2912 Uncharacterized conser 78.2 7 0.00015 37.8 6.8 72 405-491 187-258 (269)
377 PF09670 Cas_Cas02710: CRISPR- 78.0 27 0.00059 36.1 11.7 101 398-511 130-270 (379)
378 PF14561 TPR_20: Tetratricopep 77.6 14 0.00031 29.4 7.4 31 451-481 25-55 (90)
379 PF07720 TPR_3: Tetratricopept 77.5 6 0.00013 25.5 4.2 31 451-481 4-36 (36)
380 KOG1839 Uncharacterized protei 77.4 15 0.00033 42.9 10.2 125 397-529 930-1070(1236)
381 COG3914 Spy Predicted O-linked 77.4 23 0.00051 37.9 10.8 69 454-522 73-142 (620)
382 KOG1550 Extracellular protein 77.3 6.5 0.00014 43.0 7.2 116 399-528 244-372 (552)
383 KOG3617 WD40 and TPR repeat-co 76.9 22 0.00048 39.6 10.6 111 398-511 857-996 (1416)
384 PF10255 Paf67: RNA polymerase 76.6 3.9 8.5E-05 42.2 4.9 58 453-511 127-193 (404)
385 KOG1310 WD40 repeat protein [G 76.3 9.2 0.0002 40.3 7.4 75 461-535 387-464 (758)
386 PF10579 Rapsyn_N: Rapsyn N-te 76.3 21 0.00046 27.6 7.5 56 455-510 13-71 (80)
387 KOG2041 WD40 repeat protein [G 75.8 27 0.00059 38.2 10.8 28 479-506 849-876 (1189)
388 TIGR03504 FimV_Cterm FimV C-te 75.6 4 8.7E-05 27.6 3.2 27 451-477 2-28 (44)
389 KOG0985 Vesicle coat protein c 75.6 20 0.00043 41.0 10.0 108 401-531 1196-1328(1666)
390 cd02682 MIT_AAA_Arch MIT: doma 73.8 30 0.00064 26.5 7.8 19 499-517 30-48 (75)
391 COG5091 SGT1 Suppressor of G2 73.5 9.8 0.00021 36.4 6.2 125 407-537 3-133 (368)
392 COG3118 Thioredoxin domain-con 73.4 16 0.00034 35.8 7.8 53 455-507 141-193 (304)
393 KOG4459 Membrane-associated pr 73.3 24 0.00051 36.6 9.4 123 401-526 33-177 (471)
394 COG5159 RPN6 26S proteasome re 73.2 33 0.00072 33.5 9.7 69 443-511 120-194 (421)
395 KOG3783 Uncharacterized conser 72.5 64 0.0014 34.4 12.4 94 402-509 270-373 (546)
396 KOG2047 mRNA splicing factor [ 72.5 37 0.0008 36.9 10.8 115 395-511 421-540 (835)
397 KOG2422 Uncharacterized conser 70.9 58 0.0013 35.0 11.7 112 403-517 239-378 (665)
398 COG3947 Response regulator con 70.5 14 0.00031 36.0 6.7 50 482-531 279-328 (361)
399 COG3898 Uncharacterized membra 70.5 43 0.00093 34.2 10.2 100 405-525 269-371 (531)
400 KOG0530 Protein farnesyltransf 70.4 25 0.00053 33.9 8.1 81 465-545 60-141 (318)
401 COG4941 Predicted RNA polymera 69.9 47 0.001 33.2 10.1 75 451-525 332-408 (415)
402 PF08424 NRDE-2: NRDE-2, neces 68.9 27 0.00059 35.2 8.9 78 469-547 6-95 (321)
403 smart00386 HAT HAT (Half-A-TPR 68.3 13 0.00027 22.3 4.2 30 496-525 1-30 (33)
404 KOG1463 26S proteasome regulat 68.2 58 0.0013 32.7 10.4 116 404-529 214-331 (411)
405 KOG1464 COP9 signalosome, subu 68.2 15 0.00033 35.3 6.3 52 460-511 39-94 (440)
406 PF15469 Sec5: Exocyst complex 68.0 50 0.0011 30.0 9.8 26 407-432 94-119 (182)
407 COG2909 MalT ATP-dependent tra 68.0 45 0.00098 37.6 10.7 99 399-507 458-564 (894)
408 TIGR02710 CRISPR-associated pr 67.5 68 0.0015 33.0 11.3 63 400-472 131-195 (380)
409 smart00745 MIT Microtubule Int 67.4 21 0.00045 27.3 6.1 16 500-515 33-48 (77)
410 PF11846 DUF3366: Domain of un 67.3 22 0.00047 32.8 7.3 52 463-515 126-177 (193)
411 PF00244 14-3-3: 14-3-3 protei 66.9 20 0.00044 34.3 7.1 55 415-476 142-197 (236)
412 PF11207 DUF2989: Protein of u 66.4 22 0.00047 32.9 6.8 47 482-529 141-191 (203)
413 PF04053 Coatomer_WDAD: Coatom 65.1 25 0.00053 37.2 7.9 26 401-426 349-374 (443)
414 COG2909 MalT ATP-dependent tra 63.9 2.7E+02 0.0058 31.9 16.5 102 403-511 419-526 (894)
415 cd02683 MIT_1 MIT: domain cont 63.6 51 0.0011 25.3 7.5 17 500-516 31-47 (77)
416 COG1747 Uncharacterized N-term 63.5 64 0.0014 34.2 10.1 94 450-547 68-161 (711)
417 PF07079 DUF1347: Protein of u 63.5 72 0.0016 33.4 10.4 99 402-510 9-107 (549)
418 COG3629 DnrI DNA-binding trans 62.6 33 0.00071 33.7 7.7 66 480-546 151-216 (280)
419 KOG1914 mRNA cleavage and poly 61.2 49 0.0011 35.3 8.9 68 442-510 14-81 (656)
420 KOG3616 Selective LIM binding 60.7 70 0.0015 35.4 10.1 47 461-508 745-791 (1636)
421 PF04212 MIT: MIT (microtubule 60.6 15 0.00033 27.4 4.0 21 489-509 12-32 (69)
422 PF12739 TRAPPC-Trs85: ER-Golg 59.2 96 0.0021 32.5 11.1 103 400-511 209-329 (414)
423 KOG3783 Uncharacterized conser 59.1 80 0.0017 33.7 10.1 65 451-515 452-524 (546)
424 KOG1463 26S proteasome regulat 58.5 2.1E+02 0.0046 28.9 14.5 69 443-511 123-197 (411)
425 PF11207 DUF2989: Protein of u 58.4 20 0.00042 33.2 5.0 56 402-469 144-199 (203)
426 KOG0739 AAA+-type ATPase [Post 57.8 22 0.00047 35.0 5.3 38 394-431 5-42 (439)
427 KOG0985 Vesicle coat protein c 57.6 2.1E+02 0.0046 33.3 13.3 102 405-511 1054-1162(1666)
428 TIGR02561 HrpB1_HrpK type III 57.0 1.4E+02 0.003 26.3 10.3 82 402-499 13-95 (153)
429 KOG0530 Protein farnesyltransf 56.1 2E+02 0.0044 28.0 11.9 95 410-519 54-150 (318)
430 PRK15180 Vi polysaccharide bio 54.4 29 0.00063 36.2 5.9 92 408-514 332-423 (831)
431 cd02656 MIT MIT: domain contai 53.7 38 0.00083 25.7 5.3 14 501-514 32-45 (75)
432 PF12854 PPR_1: PPR repeat 52.8 36 0.00078 21.3 4.2 27 481-507 6-32 (34)
433 KOG0529 Protein geranylgeranyl 51.7 1.2E+02 0.0027 31.2 9.8 99 414-527 90-194 (421)
434 PF01239 PPTA: Protein prenylt 51.6 36 0.00079 20.6 4.0 29 467-495 2-30 (31)
435 PF08626 TRAPPC9-Trs120: Trans 51.5 2.5E+02 0.0053 34.1 14.1 38 395-432 238-275 (1185)
436 COG3014 Uncharacterized protei 50.6 1.6E+02 0.0035 29.6 10.0 124 396-521 122-252 (449)
437 PF01535 PPR: PPR repeat; Int 50.5 23 0.0005 20.9 3.0 26 451-476 3-28 (31)
438 KOG0276 Vesicle coat complex C 50.0 75 0.0016 34.4 8.2 51 456-511 645-695 (794)
439 PF10952 DUF2753: Protein of u 50.0 54 0.0012 27.7 5.8 82 451-532 4-109 (140)
440 PF03097 BRO1: BRO1-like domai 49.5 2.5E+02 0.0054 28.8 12.3 58 483-540 240-311 (377)
441 KOG3807 Predicted membrane pro 48.6 3E+02 0.0065 27.7 13.1 27 487-513 280-306 (556)
442 cd09034 BRO1_Alix_like Protein 48.4 1.7E+02 0.0038 29.6 10.8 30 482-511 251-280 (345)
443 KOG0546 HSP90 co-chaperone CPR 47.7 13 0.00029 37.2 2.3 77 405-496 281-357 (372)
444 cd02678 MIT_VPS4 MIT: domain c 47.6 1.2E+02 0.0027 22.9 7.6 29 487-515 11-46 (75)
445 PF02064 MAS20: MAS20 protein 46.8 44 0.00095 28.3 5.0 40 392-431 56-95 (121)
446 KOG0276 Vesicle coat complex C 46.3 2.3E+02 0.0049 30.9 11.0 29 400-428 667-695 (794)
447 smart00101 14_3_3 14-3-3 homol 46.2 80 0.0017 30.4 7.3 55 415-476 144-199 (244)
448 COG1747 Uncharacterized N-term 45.7 3.2E+02 0.0069 29.3 11.7 116 399-515 132-292 (711)
449 PF08238 Sel1: Sel1 repeat; I 45.2 47 0.001 20.9 4.1 29 483-511 2-37 (39)
450 KOG4014 Uncharacterized conser 43.9 2.6E+02 0.0056 25.7 9.9 47 464-512 128-198 (248)
451 PF10475 DUF2450: Protein of u 43.6 2.6E+02 0.0056 27.7 10.8 99 395-509 123-224 (291)
452 PF04010 DUF357: Protein of un 42.8 93 0.002 23.8 5.8 41 390-430 26-66 (75)
453 PF07163 Pex26: Pex26 protein; 42.7 3.4E+02 0.0074 26.7 10.8 110 403-516 39-151 (309)
454 smart00671 SEL1 Sel1-like repe 42.7 56 0.0012 20.0 4.1 29 483-511 2-34 (36)
455 PF12652 CotJB: CotJB protein; 42.6 87 0.0019 24.2 5.6 55 490-548 3-57 (78)
456 cd09241 BRO1_ScRim20-like Prot 41.6 1.1E+02 0.0023 31.4 7.9 28 483-510 238-265 (355)
457 KOG4563 Cell cycle-regulated h 41.4 1E+02 0.0022 31.3 7.2 38 394-431 36-73 (400)
458 cd00280 TRFH Telomeric Repeat 41.1 1.7E+02 0.0037 26.8 7.9 31 453-484 116-146 (200)
459 PF04190 DUF410: Protein of un 40.6 3.3E+02 0.0071 26.4 10.8 95 399-505 10-113 (260)
460 cd02677 MIT_SNX15 MIT: domain 40.6 1.1E+02 0.0023 23.4 5.9 15 496-510 20-34 (75)
461 KOG0889 Histone acetyltransfer 40.2 3.8E+02 0.0083 35.7 13.2 88 446-534 2810-2905(3550)
462 PF13812 PPR_3: Pentatricopept 39.5 57 0.0012 19.6 3.6 26 451-476 4-29 (34)
463 TIGR00756 PPR pentatricopeptid 38.7 55 0.0012 19.6 3.5 26 451-476 3-28 (35)
464 PF13041 PPR_2: PPR repeat fam 38.6 1.2E+02 0.0027 20.4 5.8 27 451-477 6-32 (50)
465 cd09239 BRO1_HD-PTP_like Prote 38.2 3.8E+02 0.0083 27.5 11.3 27 484-510 254-280 (361)
466 COG4649 Uncharacterized protei 37.7 87 0.0019 28.4 5.5 100 400-510 95-195 (221)
467 cd02681 MIT_calpain7_1 MIT: do 37.1 73 0.0016 24.5 4.4 24 486-509 10-33 (76)
468 PF02064 MAS20: MAS20 protein 37.0 84 0.0018 26.6 5.2 37 487-523 68-104 (121)
469 PF08969 USP8_dimer: USP8 dime 36.8 1.2E+02 0.0027 25.1 6.3 44 387-430 26-69 (115)
470 COG5191 Uncharacterized conser 36.7 72 0.0016 31.6 5.3 73 407-493 115-190 (435)
471 PF09797 NatB_MDM20: N-acetylt 36.2 1.6E+02 0.0035 30.1 8.4 47 461-507 196-242 (365)
472 TIGR00985 3a0801s04tom mitocho 35.9 1E+02 0.0023 27.0 5.7 41 391-431 82-123 (148)
473 cd02684 MIT_2 MIT: domain cont 35.9 2E+02 0.0043 21.9 7.0 14 501-514 32-45 (75)
474 KOG1920 IkappaB kinase complex 35.6 4.9E+02 0.011 30.9 12.2 21 489-509 959-979 (1265)
475 PRK15326 type III secretion sy 35.5 2.1E+02 0.0046 22.2 7.7 40 497-536 22-61 (80)
476 COG5600 Transcription-associat 35.3 3.5E+02 0.0075 27.7 9.9 105 408-514 139-252 (413)
477 PF04053 Coatomer_WDAD: Coatom 34.3 42 0.00092 35.4 3.7 47 459-510 329-375 (443)
478 cd02679 MIT_spastin MIT: domai 34.0 1.6E+02 0.0035 22.8 5.9 17 463-479 4-20 (79)
479 COG4649 Uncharacterized protei 33.3 3.8E+02 0.0082 24.5 12.7 90 402-504 61-154 (221)
480 KOG2581 26S proteasome regulat 33.3 4.8E+02 0.01 27.1 10.5 107 397-515 245-353 (493)
481 KOG1811 Predicted Zn2+-binding 32.7 1.2E+02 0.0026 32.8 6.5 53 460-515 568-620 (1141)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 32.5 3.1E+02 0.0067 23.2 10.3 85 413-509 40-126 (126)
483 COG4455 ImpE Protein of avirul 32.5 4.4E+02 0.0096 25.0 9.8 64 405-483 7-70 (273)
484 KOG4056 Translocase of outer m 31.8 1.2E+02 0.0026 26.2 5.2 42 390-431 72-113 (143)
485 KOG2582 COP9 signalosome, subu 31.8 80 0.0017 32.0 4.9 101 400-511 103-212 (422)
486 KOG2758 Translation initiation 31.3 2.3E+02 0.005 28.3 7.7 65 447-511 128-196 (432)
487 COG5159 RPN6 26S proteasome re 31.1 4E+02 0.0087 26.3 9.2 112 404-525 211-325 (421)
488 PF14858 DUF4486: Domain of un 30.5 2.3E+02 0.005 30.5 8.2 67 407-476 159-225 (542)
489 KOG1538 Uncharacterized conser 30.3 2.4E+02 0.0053 31.0 8.3 51 457-510 782-832 (1081)
490 cd09240 BRO1_Alix Protein-inte 30.2 3E+02 0.0065 28.0 9.0 28 483-510 256-283 (346)
491 KOG2709 Uncharacterized conser 30.0 1.7E+02 0.0037 30.2 6.8 38 395-432 18-55 (560)
492 PF10938 YfdX: YfdX protein; 29.9 1.9E+02 0.004 25.7 6.6 113 398-510 1-145 (155)
493 KOG3616 Selective LIM binding 29.8 5.2E+02 0.011 29.0 10.7 26 403-428 710-735 (1636)
494 KOG3807 Predicted membrane pro 29.8 5.9E+02 0.013 25.7 11.4 56 452-507 279-336 (556)
495 PF09670 Cas_Cas02710: CRISPR- 29.5 6.5E+02 0.014 26.0 11.5 60 452-511 135-198 (379)
496 KOG4014 Uncharacterized conser 29.2 3.3E+02 0.0071 25.0 7.8 54 455-510 175-232 (248)
497 PRK13184 pknD serine/threonine 27.5 3.6E+02 0.0077 31.6 9.8 66 451-518 555-627 (932)
498 PF07219 HemY_N: HemY protein 27.2 1.3E+02 0.0027 24.8 4.7 54 395-463 55-108 (108)
499 PF02184 HAT: HAT (Half-A-TPR) 27.1 1.2E+02 0.0025 19.1 3.2 18 497-514 2-19 (32)
500 PRK15490 Vi polysaccharide bio 26.8 5.1E+02 0.011 28.4 10.3 53 463-515 23-75 (578)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-66 Score=504.44 Aligned_cols=354 Identities=50% Similarity=0.814 Sum_probs=334.3
Q ss_pred ccccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCC
Q 008689 162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238 (557)
Q Consensus 162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~ 238 (557)
+|+|+.+|..|+.|.+||++++.+|+.|+++ +|+.|.+|.|+++.||..++.+|+. |+.+.|
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p- 66 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP- 66 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC-
Confidence 6888999999999999999999999999988 5899999999999999999999998 666665
Q ss_pred CCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCcEEEecCCCCCccc
Q 008689 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL 317 (557)
Q Consensus 239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g-~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~ 317 (557)
+.||++++|.|+|+|. |++|+|+|+++|.| ..+|..|..|+|||.+.+.|+ +|+++.. .
T Consensus 67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----~ 126 (397)
T KOG0543|consen 67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----R 126 (397)
T ss_pred ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----c
Confidence 7899999999999998 89999999999999 789999999999999999988 7776543 3
Q ss_pred EEEEcCc-cchhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee-ecccccCCChHHH
Q 008689 318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK 395 (557)
Q Consensus 318 ~~~~lg~-~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~e~ 395 (557)
|+|.+|+ ..+|.||++||++|++||+|.|+|+|+|+||..+.. .+.|||++++.|+|+|++|. +....|.+..+++
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8889999 689999999999999999999999999999955433 36899999999999999999 8899999999999
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..|...|+.||.+|+.++|..|+..|.+|++++.+....++++......+++.||+|+|.||+|+++|..|+.+|++||
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSD 552 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~~~ 552 (557)
.++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|++++.+|.+|+++.++++++++++|++||.++...++
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~ 361 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA 361 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986543
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-37 Score=275.37 Aligned_cols=278 Identities=26% Similarity=0.368 Sum_probs=240.3
Q ss_pred eCCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcE
Q 008689 267 TDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343 (557)
Q Consensus 267 ~~d~~~~kkil~~G~g~-~~p~~~~~v~v~~~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~ 343 (557)
+.-.++.|+||.+|.|. +.-.+|++|++||.+...+ ++++|+++. .+.|+++++|.....+.||.+|++|+++|+
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev 84 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEV 84 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence 34567899999999985 3455799999999998765 578998875 799999999999999999999999999999
Q ss_pred EEEEEcCC----CccCCccc-------ccc------------c-----------cCCCCCceEEEEEEEeeeee----cc
Q 008689 344 ALLTIAPE----YAFGSAES-------QQE------------L-----------AVVPPNSTVHYEVELVSFEK----EK 385 (557)
Q Consensus 344 ~~v~i~~~----~~yg~~~~-------~~~------------~-----------~~ip~~~~l~~~ieL~~~~~----~~ 385 (557)
+.|+|+.. |.|-+... .+. + ..-....+|.|.++|..+.. ..
T Consensus 85 aqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~ 164 (329)
T KOG0545|consen 85 AQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR 164 (329)
T ss_pred HHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence 99988753 33322111 000 0 00012368999999998874 46
Q ss_pred cccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhhHHHHHHhhh
Q 008689 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLK 462 (557)
Q Consensus 386 ~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~ 462 (557)
+.|.|+.++++..+..++++||.+|+.|+|.+|..+|..|+-.+.+.. ...+.++.++......+++|.|+|+++.+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 789999999999999999999999999999999999999998876543 34567999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYG 541 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (557)
+|-+++++|+.+|..+|.|+||||+||+|+..-.+..+|.++|.++|+++|.-+ .+..+|+.+..++++.++.++-.|+
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~ 324 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR 324 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 7888999999999999999999999
Q ss_pred HHhhh
Q 008689 542 NMFAK 546 (557)
Q Consensus 542 ~mf~~ 546 (557)
+||+.
T Consensus 325 kmfs~ 329 (329)
T KOG0545|consen 325 KMFSQ 329 (329)
T ss_pred HhcCC
Confidence 99963
No 3
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=293.66 Aligned_cols=351 Identities=36% Similarity=0.545 Sum_probs=269.5
Q ss_pred EcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCC
Q 008689 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (557)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~ 124 (557)
++|+|++.|..||.|.+||++++.||+.||+|.+ +.|+.|.+|.|.++.||..++..|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 79999999999999999999999998 78888
Q ss_pred CCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecC-
Q 008689 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD- 201 (557)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~- 201 (557)
++.+|++.++.|+|+++ |++++++++.+|.| ..+|..|..|.+||.+.+.++ +|+.+ ..+.|..|.
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 89999999999999997 88999999999998 899999999999999999888 66655 567888888
Q ss_pred CCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCC
Q 008689 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (557)
Q Consensus 202 ~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~ 281 (557)
..+|.||+.+|..|++||++.|+|+|+||||+.|.. .+.|||+++|.|+|+|++|....+-.
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s-------------- 196 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES-------------- 196 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence 479999999999999999999999999999955433 47899999999999999997322211
Q ss_pred CCCCCCCCCEEEEEEEEE-ecCCcEEEecCCCCCcccEEEEcCccc-hhhHHHHHHhccCcCcEEEEEEcCCCccCCccc
Q 008689 282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (557)
Q Consensus 282 g~~~p~~~~~v~v~~~~~-l~~g~~~~~~~~~~~~~~~~~~lg~~~-vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~ 359 (557)
-..++..++....+ .+.|+.+ |.-|+.. -+.-.++|+.. +..+..+..
T Consensus 197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~----------l~~~~~~~~--- 246 (397)
T KOG0543|consen 197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSF----------LEYRRSFDE--- 246 (397)
T ss_pred ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHH----------hhccccCCH---
Confidence 01111111111100 1122222 2233321 12223333322 211111000
Q ss_pred cccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH
Q 008689 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE 439 (557)
Q Consensus 360 ~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~ 439 (557)
+......-.....+.+.+..+.+.++|..|+...+++|.+.+.+..
T Consensus 247 -----------------------------ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----- 292 (397)
T KOG0543|consen 247 -----------------------------EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----- 292 (397)
T ss_pred -----------------------------HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----
Confidence 0000111123456778999999999999999999999999876553
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 008689 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP 513 (557)
Q Consensus 440 ~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~p 513 (557)
.++.+|.|++.+++|+.|+.++++|++++|+|-.+...+..+..+..++.+. .+.|.+.+..-+
T Consensus 293 ----------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ----------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred ----------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4889999999999999999999999999999977777778777777776655 777777776544
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-29 Score=216.19 Aligned_cols=169 Identities=32% Similarity=0.474 Sum_probs=140.4
Q ss_pred EEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec---cccccccceeeeeee
Q 008689 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV---KDICKDGGIIKKILK 161 (557)
Q Consensus 85 ~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~d~~~~~~i~~ 161 (557)
|.+|.+.+|+|.+.+|.||+.|+++++.+||+++||..+.. .-..+++.+.++.+... ........+...+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 45788899999999999999999999999999999965543 11245566665554332 223344555554444
Q ss_pred c-cccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008689 162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (557)
Q Consensus 162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~ 236 (557)
. .......+.||.+++||++.+.||+.||+| +|+.|.+|.|++|+||+.+|.+|++||++++.|||++|||++|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 4 335678889999999999999999999998 79999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEEeecccc
Q 008689 237 SASGNEGAVPPNATLQIALELVSWKT 262 (557)
Q Consensus 237 ~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (557)
+ +.||++++|+|+|+|+.+..
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 7 56999999999999999864
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-27 Score=203.90 Aligned_cols=176 Identities=28% Similarity=0.470 Sum_probs=142.7
Q ss_pred EEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc---eeeeeCCccee
Q 008689 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT---VSEITDDKKVI 273 (557)
Q Consensus 197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~---~~d~~~d~~~~ 273 (557)
|++|.+.+++|++.+|.+|+.|+++++++||+++||..+.. .-..++|.+.++.+.. ......+..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 35788999999999999999999999999999999955442 2234566666555432 12222334443
Q ss_pred EEEEeCC-CCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCCC
Q 008689 274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (557)
Q Consensus 274 kkil~~G-~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~ 352 (557)
-.+++.= .+..+...|+.+++||++.++||+.||+++. +++|++|+||.++||+|||++|..||+||+..++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 3333331 2556788899999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCceEEEEEEEeeeeeccc
Q 008689 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (557)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~ 386 (557)
+||+.|.++ .||++++|+|+|||..+.....
T Consensus 150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 999999865 4999999999999999986544
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.6e-27 Score=176.73 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.4
Q ss_pred CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCc
Q 008689 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (557)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ 117 (557)
|+.+.++.+|+|...|+.||.|++||++.+.||+.||||.+++.|+.|.+|.|.+|.||++++..|.+|++++++|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 118 ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
|||..+.+..||||++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999986
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=205.29 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.6
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
.+.++|+.|++++.|+| ..|+.+|.|.+||++++.||++||||+++++|+.|.|| ++|+||.+||.+|++|++++++
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 45899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
|||++|||..+.++.||||++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999988889999999999999986
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=165.48 Aligned_cols=105 Identities=38% Similarity=0.655 Sum_probs=98.8
Q ss_pred eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCC
Q 008689 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351 (557)
Q Consensus 272 ~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~ 351 (557)
+-+.+|.+|+|...|..|++|++||++.|.||+.||++. +++.||+|.+|.++||.||+.++..|.+||++.++|+|+
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd 80 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD 80 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence 668899999999999999999999999999999999876 588999999999999999999999999999999999999
Q ss_pred CccCCccccccccCCCCCceEEEEEEEeee
Q 008689 352 YAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (557)
Q Consensus 352 ~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~ 381 (557)
|+||..|.+ ..||||++|.|+|||+.+
T Consensus 81 ~aYG~~G~p---~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 81 YAYGPRGHP---GGIPPNATLVFDVELLKV 107 (108)
T ss_pred cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence 999999843 589999999999999875
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=4e-22 Score=184.63 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.4
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.+++|+.|.+| ++++||+++|.+|++|++++|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 88999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
|||++|||..+.++.|||+++|+|+|+|++|
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999987
No 10
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.87 E-value=1.9e-21 Score=175.65 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.8
Q ss_pred eecCCCeEEEEEEc--ccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (557)
Q Consensus 33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~ 110 (557)
..+++|++|.++++ |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 45889999999976 666 78999999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|+|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999985
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-21 Score=179.62 Aligned_cols=107 Identities=50% Similarity=0.879 Sum_probs=102.7
Q ss_pred ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceE-EEccCCcccHHHHHHHcccccccEEEE
Q 008689 34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAVF 111 (557)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~-~~lg~~~~~~gl~~~l~gm~~Ge~~~v 111 (557)
+.++||+|+.++.|+| +.+..|+.|.+||.+++. +|++||++... .|+. |.+|.+.+|+||+.++.||++|++|+|
T Consensus 117 tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred ecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 5899999999999999 999999999999999998 99999999874 8999 999999999999999999999999999
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
+|||++|||..+.+ .||||++|+|+|+|+.+
T Consensus 195 iIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 99999999999987 89999999999999876
No 12
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-21 Score=172.30 Aligned_cols=103 Identities=34% Similarity=0.585 Sum_probs=96.3
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
...+++.++++..|+| ..|..++.|++||++++.+|++||+| +|+.|.+| ++|+||.+||.+|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 4678899999999988 88999999999999999999999997 78888888 99999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
||++|||..|.+ +.||||++|+|+|+|+++
T Consensus 175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence 999999999976 569999999999999986
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.6e-21 Score=181.09 Aligned_cols=125 Identities=33% Similarity=0.441 Sum_probs=119.7
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
+....|+.+|.+||.+++.++|++|+.+|.+||.+.|.++.+ |+|+|++|.++|+|+.|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence 678899999999999999999999999999999999998877 99999999999999999999999
Q ss_pred HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
+|.+||.++|+|-|+|.||+.+|+|++|++.|++||.|+|+|...+..|..+..++.+..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999998888876655
No 14
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=165.73 Aligned_cols=143 Identities=34% Similarity=0.493 Sum_probs=127.6
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
..+..+..+|..||.+|+.|+|..|...|..||.++|.... ..+..||.|+|+|.+|++.|+.|+..|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 34788999999999999999999999999999999986542 56788899999999999999999999999
Q ss_pred HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT 549 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (557)
+|+++|.+.||+.|||.+|.++.+|++|+++|++.++++|.+..++....++..++.+++++.+. .|+.+++.
T Consensus 160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe---e~m~kLKd 232 (271)
T KOG4234|consen 160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE---EMMEKLKD 232 (271)
T ss_pred hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH---HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888777765443 34444443
No 15
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.82 E-value=1.2e-19 Score=174.11 Aligned_cols=109 Identities=50% Similarity=0.880 Sum_probs=102.5
Q ss_pred ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEe
Q 008689 34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113 (557)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~i 113 (557)
.+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ +++|||+++|.+|++|++++|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence 4899999999999999 78999999999999999999999999988889999986 69999999999999999999999
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689 114 PPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (557)
Q Consensus 114 p~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (557)
|++++||..+.+ .||+|++++|+|+|+++...
T Consensus 220 P~~laYG~~g~~-gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 220 PPELAYGKAGVP-GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred CchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence 999999999865 69999999999999999753
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=8.6e-19 Score=143.47 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=87.1
Q ss_pred CcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCC-CCC
Q 008689 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (557)
Q Consensus 49 G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~-~~~ 127 (557)
|.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||+.+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4467999999999999999999999999877799999999999999999999999999999999999999999987 457
Q ss_pred CCCCCcEEEEEEEE
Q 008689 128 IPPNATLQFDVELL 141 (557)
Q Consensus 128 ip~~~~l~~~v~l~ 141 (557)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999985
No 17
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.8e-18 Score=157.15 Aligned_cols=105 Identities=30% Similarity=0.473 Sum_probs=98.3
Q ss_pred cccccceeeeeeeccccccCCCCCCeEEEEEEEEeC-CCeEeeec---cceE-EEecCCCCCchHHHHHhhccCCcEEEE
Q 008689 149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (557)
Q Consensus 149 ~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~i 223 (557)
.+..+++.+..+..|.| ..+..|++|.++|.+++. .|++|+++ .|+. |.+|.+++|+||+.++.+|++|.+++|
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 45678899999999997 999999999999999999 89999987 8888 999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
+|||++|||..|.+ .||||+||+|+|+|+.+
T Consensus 195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence 99999999999885 89999999999999875
No 18
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.75 E-value=3.3e-18 Score=151.68 Aligned_cols=133 Identities=23% Similarity=0.350 Sum_probs=98.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.||++|++++|.|||++|||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d-------- 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS-------- 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 578999999999999999999999987679999999999999999999999999999999999999999887
Q ss_pred CcEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (557)
..++..+....+...... ..+.........|. +...-..++.|++|+||++++.++.+.-+
T Consensus 76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~ 139 (156)
T PRK15095 76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE 139 (156)
T ss_pred hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEE
Confidence 445555554444321111 11111100011121 11233355899999999999999877653
No 19
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.4e-18 Score=148.15 Aligned_cols=134 Identities=28% Similarity=0.409 Sum_probs=101.4
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
++..||.|+++|++++.||++||+|.....|+.|++|.|++++||++||.||.+|++.+|.|||+.|||+++
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~-------- 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD-------- 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC--------
Confidence 467899999999999999999999987568999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEEEeeeccccccccceeeeeeecc-----ccccCCCCCCeEEEEEEEEeCCCeEeeeccceEE
Q 008689 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEF 197 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g-----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~ 197 (557)
..++-.+..-.|....++.. +. ++...+ .+..+...++.|+++|||+|++.++.++-+-..+
T Consensus 74 ~~lvq~vp~~~F~~~~~~~v--Gm--~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v 140 (174)
T COG1047 74 PDLVQRVPRDEFQGVGELEV--GM--EVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEV 140 (174)
T ss_pred hHHeEEecHHHhCcCCCCCC--Cc--EEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEE
Confidence 44554444444433211110 10 111111 1223444568999999999999999887654444
No 20
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.74 E-value=1.6e-17 Score=150.15 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=93.7
Q ss_pred cccceeeeeeec--cccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 151 KDGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 151 ~d~~~~~~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
...++.+.++.. |++ ..|..||.|++||.+++.+|++++++ .|..|.+|.+++++||+++|.+|++||++++.|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 345666766655 444 67899999999999999999999987 589999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
||++|||..|.+ ..||||++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence 999999998865 6899999999999999984
No 21
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=5.4e-17 Score=150.46 Aligned_cols=103 Identities=30% Similarity=0.536 Sum_probs=94.7
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
..+.++.+++++.|+| ..|..++.|++||.+++++|++|+++ +|..|.++ ++++||+++|.+|++|+++.++|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 3567889999999999 68999999999999999999999987 68888885 69999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
||++|||+.|.+ +.|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAG-----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence 999999998874 689999999999999986
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-16 Score=157.81 Aligned_cols=134 Identities=32% Similarity=0.415 Sum_probs=115.1
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (557)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (557)
..+..+++...|..+|.+||.+|+.|+|++||.+|.+||.++|..+.+ |.|+|+||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence 456888999999999999999999999999999999999999987766 99999999999999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
+++|.++|+++|+++|||+|||.||..||++.+|+.+..-.--+ +-+|..+...+.++.+++...+.++
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e 238 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKE 238 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998543322 3355566666666666665554443
No 23
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.69 E-value=7.7e-17 Score=153.04 Aligned_cols=123 Identities=31% Similarity=0.434 Sum_probs=115.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (557)
.++.+..+..++++||.||++|.|++|+.||.+++.+.|.++.. |.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence 45677888889999999999999999999999999999988776 889999999999999999999
Q ss_pred HHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 472 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+.|+.+|....|||-||+.|...||...+|.++++.+|.|+|++.+.++.++.+...+
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999999999999999888888876633
No 24
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.69 E-value=1.1e-16 Score=145.36 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
+++.+++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+|+++|.+|++|++++|.|||+.|||+++
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d-------- 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-------- 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 467899999999999999999999986 48999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEEEeeeccccc---------cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689 132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~---------~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (557)
..++..|....|.....+. .++.+..+|+ -..++.|+++||++|++.++.++-+
T Consensus 73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~--------ev~~d~V~vD~NHPLAG~~L~F~ve 135 (196)
T PRK10737 73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEIT--------AVEDDHVVVDGNHMLAGQNLKFNVE 135 (196)
T ss_pred hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEE--------EEcCCEEEEECCCcCCCCEEEEEEE
Confidence 3445555443332211111 1111222222 2345899999999999998877653
No 25
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.8e-16 Score=159.44 Aligned_cols=117 Identities=36% Similarity=0.499 Sum_probs=111.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+...++.||.+|+.++|..|+.+|.+||...|.+... |+|+|+||+++++|..|+.+|++++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999877654 999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+|++.|+|+|.|.|+..+.+|++|++.|.++++++|++.++...+.+|...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999997765
No 26
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.65 E-value=1.3e-15 Score=124.53 Aligned_cols=94 Identities=39% Similarity=0.668 Sum_probs=85.3
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCCCccCCccccc
Q 008689 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (557)
Q Consensus 282 g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~ 361 (557)
|..+|..|++|+|||.+++.+|++|+++.. ...|++|.+|.+.+++||+.+|..|++||++.|.+++.++||+.+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 445799999999999999999999998743 688999999999999999999999999999999999999999988743
Q ss_pred cccCCCCCceEEEEEEEe
Q 008689 362 ELAVVPPNSTVHYEVELV 379 (557)
Q Consensus 362 ~~~~ip~~~~l~~~ieL~ 379 (557)
..||+++++.|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 3599999999999985
No 27
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.6e-15 Score=141.59 Aligned_cols=107 Identities=30% Similarity=0.416 Sum_probs=96.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.|..+|+.||.||+.++|..|..+|.++|.....+. .+.+.||+|+|+|++.+++|..|+.+|.+|+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999766555 35788999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
++|.+.||++|-|+|++.|.++.+|..+++..+.++-+
T Consensus 148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999988888888776665433
No 28
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.3e-15 Score=146.66 Aligned_cols=129 Identities=26% Similarity=0.383 Sum_probs=116.8
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
.+......+++||.+|+.|+|..|..+|..||.+.|.+.. ..+.||.|+|.+..++++..+|+.+|+.|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4566788999999999999999999999999999887543 36788999999999999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
+.+|+...|||.++|+||+.|++|++|.++|++|++++.+ .+++..++++...+++.+.+
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRK 373 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999887 67888888887777665543
No 29
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.60 E-value=6e-15 Score=141.87 Aligned_cols=104 Identities=34% Similarity=0.609 Sum_probs=93.1
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
..+.++.++++.+|+| ..|..+|.|++||.+++.+|++|+++ .|..|.+ +++++||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence 3577899999999999 68999999999999999999999976 4566655 579999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (557)
||+++||..|.+ .|||+++|+|+|+|+++..
T Consensus 220 P~~laYG~~g~~------gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 220 PPELAYGKAGVP------GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CchhhCCCCCCC------CCCCCCcEEEEEEEEEecc
Confidence 999999998763 6999999999999999864
No 30
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.55 E-value=4.2e-14 Score=144.29 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=110.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..++.+|+.+|..++|..|+.+|.+|+++.+.+.. +|+++|.||+++++|++|+.++++++.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345788999999999999999999999998876543 48899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
|++..+|+++|.+|..+|+|++|+..|++|++++|++..+...+.+|..+++..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998888654
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.7e-14 Score=143.95 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=107.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+++.||..|..|+|..|+.+|..|+.+.|.+... |.|+++||.++++|.+|+.+..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999876544 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
|+++|+|.|+|.++..||+|++|+..|.+.|+.+|+|+.....+....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999888888776
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.51 E-value=3.6e-13 Score=148.60 Aligned_cols=134 Identities=31% Similarity=0.384 Sum_probs=116.9
Q ss_pred CCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 008689 366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445 (557)
Q Consensus 366 ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~ 445 (557)
.|+...+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|.+|+..|.+|+.+.|. .
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 45555555555555444 355789999999999999999999999999999999999999998763 1
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 13889999999999999999999999999999999999999999999999999999999988877654
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=4.3e-13 Score=118.73 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=103.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+...|..+++.|+|.+|+..|.+++...|.+... +.++|.++.++|+|++|+..|++++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 5567999999999999999999999987765543 8899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+.+++++|.++..+|++++|+..|.+|++++|++.......+.....+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887777665554
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4e-13 Score=122.29 Aligned_cols=115 Identities=31% Similarity=0.396 Sum_probs=102.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+.++++.||.+|..+.|..|+.+|.+||.+.|..+.+ |.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 468899999999999999999999999999999887766 88999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----C-CHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP----D-NRDVKLEYKTLK 526 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p----~-n~~~~~~l~~l~ 526 (557)
++|+.+|++|-+|++++....|++|+..+.+|+.+.- . -.++..+|..++
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999977631 1 125666666553
No 35
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.40 E-value=4.7e-13 Score=134.10 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=114.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.|..+++++|.+|+.+.|..|+..|.+||++.++...+ +.|+|.+|+|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 47788999999999999999999999999999988777 779999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
+|...|+|+|+|.++++++++.+|+.+|++..++.|+++.+++.+..|....++.+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988876654
No 36
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=1.1e-11 Score=108.19 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=95.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
..+.+...|..+++.|+|+.|...|+-.+.+.+..... ++|||.|+..+++|.+|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45667889999999999999999999999998876655 899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
+|+++.++++.|.||+.+|+.+.|++.|+.|+.+.-.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999987433
No 37
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.8e-13 Score=127.80 Aligned_cols=155 Identities=31% Similarity=0.450 Sum_probs=137.9
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH----HHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE----KKQAKALKVACNLNNAACKLKLKDYKQ 466 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (557)
+....+..+...++.|+..|+.++|..|...|.+++++..........+ +.....++..++.|+|.|-++.+.|..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 4445667788899999999999999999999999999887422211111 344667788889999999999999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|+..|..+++.++...+||||++++++.+.++++|+++++.|....|++..+...+...+++...++.++++.+.+||+
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 38
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.36 E-value=2.2e-12 Score=114.55 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCC
Q 008689 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKG 235 (557)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g 235 (557)
.++.++.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.+.|||+.|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 4577899999999999999999986 6999999999999999999999999999999999999999653
No 39
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.7e-12 Score=112.92 Aligned_cols=123 Identities=25% Similarity=0.361 Sum_probs=92.1
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ 244 (557)
+..++.|+++|+.++.+|++++++ .|+.|.+|.|++++||+++|.+|.+|++.+|.|||+.|||...
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~--------- 73 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD--------- 73 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC---------
Confidence 567899999999999999999987 5999999999999999999999999999999999999999763
Q ss_pred CCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCC-----CCCCCCCCCEEEEEEEEEecCCcEEEe
Q 008689 245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD-----GFERPNEGAVVKVKLIGKLQDGTVFVK 308 (557)
Q Consensus 245 ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~-----g~~~p~~~~~v~v~~~~~l~~g~~~~~ 308 (557)
..|+-.+.+..|.... +..+-..+.-++. |...-..+.+|+|.|++.|++.++.++
T Consensus 74 ----~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 74 ----PDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ----hHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEE
Confidence 3445455555553311 2222223333221 222334578899999999987766543
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=1.5e-11 Score=107.71 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=103.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+......|..+++.++|++|+..|.+++...+.+.. ++.++|.|++++++|.+|+..+++++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------------YWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455788999999999999999999999988765432 37899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|.+...++.+|.+|..+|++++|+..|+++++++|++........++...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776666665544
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-11 Score=126.32 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=106.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
++.+.++.+.||.|-..+.|++|+.+|.+|+.+-|..+.. |.|+|.+|..+|..+.||.+|+++|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHH
Confidence 3456788899999999999999999999999887766554 7788888888888888888888888
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+++|+...||.++|.|+..+|+..+|.++|++||.+.|+.++....|..++..+...+..-+ +|.+.|.
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~ 382 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE 382 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence 88888888888888888888888888888888888888888888888877777766666554 6665554
No 42
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.25 E-value=2.1e-11 Score=111.00 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=63.0
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKG 235 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g 235 (557)
+..++.|+++|+.++.+|++++++ .|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||...
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 457789999999999999999987 8999999999999999999999999999999999999999753
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=4.3e-11 Score=91.58 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=62.8
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP 513 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p 513 (557)
..+.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|++|++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 358899999999999999999999999999999999999999999999 79999999999999998
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2.9e-10 Score=113.50 Aligned_cols=105 Identities=20% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+.++|..+...|++.+|+..|++|+.+.|.... +|+++|.++..+++|++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------------AYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667899999999999999999999999998876543 489999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
++|++..+++++|.++..+|++++|+++|+++++++|++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999996
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.18 E-value=9.5e-11 Score=119.76 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
...++|||.+|-.+|++++|+.+|++||+++|+.+.||.++|..|..+|+.+.|+++|.+|+.++|...++...|..+.+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 44577788888888888888888888888888777777777777777777777777777777777777777777666654
Q ss_pred H
Q 008689 528 K 528 (557)
Q Consensus 528 ~ 528 (557)
.
T Consensus 468 D 468 (966)
T KOG4626|consen 468 D 468 (966)
T ss_pred c
Confidence 3
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=5.4e-10 Score=104.34 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH-HhhhC--HHHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV 474 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~k~~~--~~~A~~~~~~a 474 (557)
.+..+...|..+...|+|+.|+..|.+|+++.+.+... +.++|.++ ...++ +.+|+..++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 35678889999999999999999999999998876544 88999984 77787 59999999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
++.+|++..+++.+|.++..+|+|++|+..++++++++|.+.+-...+
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999999999999999999999999999999875444333
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.13 E-value=6.4e-10 Score=122.83 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=92.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-------HHHHHHHHHHHHhhHHHH
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-------KKQAKALKVACNLNNAAC 457 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~nla~~ 457 (557)
..+..+...|..++..|++++|+..|++|+.+.|..... ..++ ..+.......+++++|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345567778888888889999999998888876543211 0000 000111123456667777
Q ss_pred HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
|+.+|+|++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++++.|++..+...+..+...+.+..+...
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777776666666666655555444332
Q ss_pred HHHHHHhh
Q 008689 538 KFYGNMFA 545 (557)
Q Consensus 538 ~~~~~mf~ 545 (557)
.|.+.+.
T Consensus 489 -~~~~Al~ 495 (615)
T TIGR00990 489 -KFDTAIE 495 (615)
T ss_pred -HHHHHHh
Confidence 4444443
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=1.5e-09 Score=92.34 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+++.|+|++|+..|.+++...+.+.. ...+++++|.++++.++|+.|+.++++++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999987664321 123477899999999999999999999999988
Q ss_pred CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
++ ..+++.+|.++.+++++++|+..|++++...|++..+...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 86 678999999999999999999999999999999976555443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=4.2e-10 Score=116.71 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHH-HHH---------HHHHHhhHHHHHHh
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQA-KAL---------KVACNLNNAACKLK 460 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~-~~~---------~~~~~~nla~~~~k 460 (557)
+.+...||.|--+++++.|+++|++|+.+.+...-. ..+|.+.. ... .-.+++-+|.+|+|
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 567889999999999999999999999998854322 11111111 111 12234455556666
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
+++|+.|..++++|++++|.|.-.+...|..+.++|+.++|+..|++|+.++|.|...+-....+...+.+..+
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 66666666666666666666666666666666666666666666666666666665544444444444444433
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.2e-09 Score=107.42 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=111.2
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...|..+.-+|..+|-.|++..|...|+++|.+.+..... |..||..|+.+++-++-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 4568889999999999999999999999999988755432 7889999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
.+||+|+..||.||+.+.-+++|++|+++|++|++|+|+|.-...++.-+.-++.+..+.+ +.|.....++.
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m-~~Fee~kkkFP 459 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM-KTFEEAKKKFP 459 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999544444444444444444433 35555555443
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=1.2e-09 Score=104.73 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=101.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+.+.|+.++.+++|..|+.+|..|++..|++.. .++.+|.+|+.+|+-+-|+.++.++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------------aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------------AIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------------HHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 35778899999999999999999999999998875432 277999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+.|+..-|-..||.+++++|++++|.++|+++|..+|++........++
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999876544444444
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=1.6e-09 Score=103.80 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=108.4
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
-.++..+....+.+......++|-.++..+.+.++..|....+ +...+--++.||..-+++-+||..|+
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHH
Confidence 3455666666777788888999999999999988876654433 22234457899999999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
++|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.+.++..+..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888876665543
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=4.1e-09 Score=96.47 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=96.2
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
.+...+..+...|..++..|+|++|+.+|++|+...+.... ...++.++|.+|.++++|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566788999999999999999999999999987553221 234588999999999999999999999
Q ss_pred HHccCCCChHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 008689 474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~lg~--------------~~~A~~~~~~al~l~p~n 515 (557)
++..+|.+..+++.+|.+|..+++ +++|++.+++++.++|+|
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999998 678888888888888887
No 54
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.00 E-value=1.4e-09 Score=82.03 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=60.8
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
+++|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999984
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=4.9e-09 Score=91.94 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=94.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
.......|-.+|+.|+|+.|...|+-...+.+.+..+ +..||.|+..+++|++|+..|..+..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667788999999999999999999888776655443 6799999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
++++...|+.|+||+.+|+.+.|+.+|..|+. .|.+..++..
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 99999999999999999999999999999998 5666554443
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.99 E-value=6e-09 Score=118.52 Aligned_cols=122 Identities=5% Similarity=-0.013 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+.+.|++++|+..|.+|+.+.|.+.. +++|+|.++..++++++|+..++++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34556666777777777777777777776665442 377888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
+++.+++++|.++..+|++++|+..|++|++++|++..+......+..+....+...
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888877777776665555444433
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=5.5e-09 Score=92.42 Aligned_cols=107 Identities=10% Similarity=0.015 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (557)
Q Consensus 420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~ 499 (557)
..|.+|+++.|.. +.++|.++..+|+|++|+.+|.+++.++|.+..+++.+|.++..+|+++
T Consensus 14 ~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 14 DILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 5677888776632 4578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|+..|.+|++++|++..+...+..+...+.+..+... .|.+...
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~Al~ 120 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTAIK 120 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 99999999999999999999999998888877766553 5555443
No 58
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.98 E-value=2.6e-08 Score=82.63 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=101.6
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~ 470 (557)
.....++....+--+|..+-..|+.+.|++.|.+|+.++|..++. |+|+|.++.-+++.++|+.+
T Consensus 35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHH
Confidence 334566777888889999999999999999999999999876654 99999999999999999999
Q ss_pred HHHHHccCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 471 CTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 471 ~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
.++++++.... ..+|..||..|..+|+.+.|+.+|+.|-.+.... ++.+|-.+
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~l 156 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVEL 156 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhc
Confidence 99999986544 5689999999999999999999999999997665 55555444
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.7e-09 Score=86.16 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
+++|+.|+..|++++...+.+. ....++++|.||+++++|++|+..+++ +..++.+..+.+.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999887421 122467899999999999999999999 88999999999999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 008689 492 YIQMADLDLAEFDIKKA 508 (557)
Q Consensus 492 ~~~lg~~~~A~~~~~~a 508 (557)
+..+|+|++|++.|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999886
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=6.7e-09 Score=113.77 Aligned_cols=137 Identities=5% Similarity=-0.008 Sum_probs=122.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..++..|....+.|.|++|...+..++.+.|.... +..|+|.+..+++++++|+..|+++|..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------------a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------------AFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------------HHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 4677888999999999999999999999999886543 3789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG 550 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~ 550 (557)
+|+|..+++.+|.++.++|+|++|++.|++++..+|++..+...+..+.+.+.+.++... .|.+.+......
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~~~~~~~ 221 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGLDAIGDG 221 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhhCcc
Confidence 999999999999999999999999999999999999999999999998888877777664 677776665443
No 61
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.96 E-value=5.7e-10 Score=107.28 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=103.5
Q ss_pred CCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (557)
Q Consensus 389 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (557)
....++.++.|...+-.+..++..|.++.|+.+|..|+.+.+....+ |.++|.++++++++..|+
T Consensus 104 ~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 104 AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAI 168 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhh
Confidence 34567889999999999999999999999999999999998876654 889999999999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
++|..|++++|+..+.|-.|+.|+..||+|++|..+|..|.+++-+
T Consensus 169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998754
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.95 E-value=5e-09 Score=83.99 Aligned_cols=99 Identities=34% Similarity=0.445 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+...|..++..+++.+|+..|.++++..+... .++.++|.++...+++++|+.++++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999999998765432 34778999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
+..+++.+|.++..++++++|...+.++++++|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988874
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.1e-08 Score=95.60 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=104.9
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
.++.++++..|.++++..|.+.. .+.++|.+|+.++++++|+..++++++++|++..+++.+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~---------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56667888888888887776543 388999999999999999999999999999999999999998
Q ss_pred H-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689 492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT 549 (557)
Q Consensus 492 ~-~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (557)
+ ...|+ +++|++.|+++++++|++..+...+......+.+.++... .|++++.....
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~ 176 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLDLNSP 176 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence 5 67787 5999999999999999999999999999888887777764 77777765544
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9.2e-09 Score=102.47 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=82.7
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.||-|--+++.+.|+..|++|+++.|..... +.-+|.-|..+++-..|+..|++|++++|.+.+|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~a---------------WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSA---------------WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHH---------------HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 5777777888999999999999988765433 5556666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
||-+|++|.-++-..-|+-+|++|+++-|++..++..|+.|..++.+..++.+ .|++.+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai 459 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAI 459 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHH
Confidence 66666666666666666666666666666666666666666655555554443 444443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-08 Score=102.75 Aligned_cols=124 Identities=23% Similarity=0.172 Sum_probs=94.9
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---------hHHHHHHHHH-----------------HHHHHhhHHHHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEKKQAKAL-----------------KVACNLNNAACK 458 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~---------~~~~~~~~~~-----------------~~~~~~nla~~~ 458 (557)
.|..+.+.+++..|-..|.+|+.+.|.++-.. .++..++..+ -...++|||.+|
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 45555556666666666666666665554221 1122221111 123378999999
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
.|++.|.+|+.+++++|.+.|.++.++--.|.+|..+|+++.|++.|.+||.++|+|..+...|..+...
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998888888766444
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.9e-08 Score=100.22 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=120.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
....+--.|.++...++-..|+..|++|++++|.+-.. ++-||++|--++-+.=|+-++++|+.+
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 35566778999999999999999999999999976644 789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
.|++...|--+|.||.++++.++|+++|++|+...-.+..+.-.|+++.++++..++.- +.|.+.....
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~~~ 496 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVEVS 496 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999888899999999999998887765 3666665543
No 67
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.91 E-value=1.5e-09 Score=113.50 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=102.5
Q ss_pred CCCCCcCCCCCCCCcCccCcceee-------ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCc
Q 008689 10 ANEMDADMDLPDDAPMMKVGEEKE-------IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTP 82 (557)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p 82 (557)
...++++..++...|...+.++.. ....+.+ .+-+. ..++.||.|.++|+++. +|+.|+++.. .+
T Consensus 102 ev~l~~y~~i~v~~~~~~vtde~vd~~i~~l~~~~a~~----~~~~~-~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~ 173 (408)
T TIGR00115 102 EVELGDYKGIEVEKPEVEVTDEDVDEELEKLREQNATL----VPVER-RAAEKGDRVTIDFEGFI-DGEAFEGGKA--EN 173 (408)
T ss_pred ceecCCCCceEEEeccCCCCHHHHHHHHHHHHHhCCcc----ccccc-cccCCCCEEEEEEEEEE-CCEECcCCCC--CC
Confidence 344555555555555555554442 1222222 22233 46789999999999986 8999988753 78
Q ss_pred eEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeee
Q 008689 83 FKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI 159 (557)
Q Consensus 83 ~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i 159 (557)
+.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+. ++.++.|.|+|.++........+..+++.+
T Consensus 174 ~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 174 FSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----AGKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred eEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----CCCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 999999999999999999999999999999999999987664 469999999999998766666666666654
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=5.2e-08 Score=93.95 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=98.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..+++.|+|+.|+..|.+++...|.+.. ....++++|.+|+++++|++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998775431 2234789999999999999999999999999
Q ss_pred CCCChH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 478 ~p~~~k---a~~~~g~a~~~l--------g~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
+|++.. +++.+|.++..+ +++++|++.|++++..+|++......+
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 998876 799999999987 889999999999999999997555444
No 69
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.6e-09 Score=111.94 Aligned_cols=146 Identities=21% Similarity=0.355 Sum_probs=115.6
Q ss_pred CCCCCCCCCcCCCCCCCCcCccCcceee---ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCc
Q 008689 6 DIPAANEMDADMDLPDDAPMMKVGEEKE---IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTP 82 (557)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p 82 (557)
++=+...++++..++..-|...+.++.. |..-.-....+.+-++ . ++.||.|+|+|.++. ||..|+.... +.
T Consensus 110 ev~Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~ 184 (441)
T COG0544 110 EVYPEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--EN 184 (441)
T ss_pred EEeeceecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cC
Confidence 3444577889999999999988885552 2222333444545455 3 899999999999976 9999988765 57
Q ss_pred eEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeee
Q 008689 83 FKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILK 161 (557)
Q Consensus 83 ~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~ 161 (557)
+.|.||+|++||||+.+|+||++|+++.|.+..+..|....+ ++.+..|.|+|..+........++.+.+.+..
T Consensus 185 ~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~~ 258 (441)
T COG0544 185 FSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLGE 258 (441)
T ss_pred eEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcCc
Confidence 999999999999999999999999999998888888877665 44899999999999987777777777665543
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=4.8e-08 Score=89.01 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=92.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
....+..+...|..++..++|++|+..|.+|+.+.+... ....+++|+|.+|.+++++++|+..|.++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344688889999999999999999999999998854321 12335899999999999999999999999
Q ss_pred HccCCCChHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCCH
Q 008689 475 LDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR 516 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~-------~lg~~~-------~A~~~~~~al~l~p~n~ 516 (557)
+.++|.+..+++++|.+|. .+|+++ +|+..|++++.++|++.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999 777776 55666667778888774
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=3.6e-08 Score=90.26 Aligned_cols=132 Identities=23% Similarity=0.185 Sum_probs=79.8
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------------ChHHHHHH---HHHHHHHHhhH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------------GDEEKKQA---KALKVACNLNN 454 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~----------------~~~~~~~~---~~~~~~~~~nl 454 (557)
..-..+....+.|..|++.|++..|...+++||+..|+.... ..+...+. ..-...+++|.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 344567788899999999999999999999999988865432 00000100 01122334444
Q ss_pred HHHHHhhhCHHHHHHHHHHHHcc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+.-...+|+|++|..++++|+.. -+.....|-|+|.|.++.|+++.|.++|+++|+++|++.....++.+.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 44444444444444444444432 122345566677777777777777777777777777776555444443
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=2.7e-09 Score=81.52 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~ 477 (557)
|..+...|..+++.++|++|+..|++|+++.+.+. .+++|+|.||.+++ +|.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---------------EAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67789999999999999999999999999987644 34999999999999 799999999999999
Q ss_pred CC
Q 008689 478 DS 479 (557)
Q Consensus 478 ~p 479 (557)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 88
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.88 E-value=2.3e-08 Score=113.76 Aligned_cols=99 Identities=10% Similarity=0.107 Sum_probs=89.0
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
.++.|+|.++.++|++++|+..+.+++.++|++..+++++|.++..+|++++|++.|++|++++|++..+...+..+...
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 008689 529 MKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~~~~ 548 (557)
+.+..+... .|++.+..-.
T Consensus 690 lGd~~eA~~-~l~~Al~l~P 708 (987)
T PRK09782 690 LDDMAATQH-YARLVIDDID 708 (987)
T ss_pred CCCHHHHHH-HHHHHHhcCC
Confidence 877776664 6666655443
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=98.87 E-value=2.4e-08 Score=108.63 Aligned_cols=108 Identities=12% Similarity=-0.054 Sum_probs=51.9
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
..|..+...|++++|+..|++|+++.|.+... ++++|.++..+|++++|+.+++++++++|.+..
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISADI---------------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 34444445555555555555555544433221 444555555555555555555555555555544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLK 526 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~-p~n~~~~~~l~~l~ 526 (557)
+++.++.+++.+|++++|++.++++++.. |++......+..+.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 44444444444555555555555554442 44444444444333
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=2.6e-08 Score=93.09 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+...|..++..|+|.+|+..+.+|....|+++.. ++-+|.+|.++|+++.|...|.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 44559999999999999999999999999988766 888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
++.++-|+|..|+-.|+++.|...+..+...-+.+..+...+..+.......+..+
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999999999999989999999988877766555544
No 76
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=96.19 Aligned_cols=91 Identities=25% Similarity=0.321 Sum_probs=81.8
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
+-+.-+++.++|.+|+..|++||+++|+|+-.|.+||.||.+||+|+.|++++++|+++||....++..|..++-.+.+.
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 66778889999999999999999999999999999999999999999999999999999999988888888888888777
Q ss_pred HHHHHHHHHHHh
Q 008689 533 NKKEAKFYGNMF 544 (557)
Q Consensus 533 ~~~~~~~~~~mf 544 (557)
.+.... |++.+
T Consensus 166 ~~A~~a-ykKaL 176 (304)
T KOG0553|consen 166 EEAIEA-YKKAL 176 (304)
T ss_pred HHHHHH-HHhhh
Confidence 776653 65544
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=2.4e-08 Score=108.64 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=86.0
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
.+++.+|+..+++|+++.|.+... +.++|.++..++++++|+..++++++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456899999999999998865533 77899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
|..+|++++|+..|++|++++|.+......
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 999999999999999999999998755433
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=5.5e-08 Score=92.48 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
..+.++|.++..++++++|+..+.+++..+|++..+++.+|.++..+|++++|+..+++++.+.|.+......+..+...
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34677888888999999999999999988888888888899999999999999999999888888776666555555554
Q ss_pred HHHHHH
Q 008689 529 MKEYNK 534 (557)
Q Consensus 529 ~~~~~~ 534 (557)
.....+
T Consensus 216 ~~~~~~ 221 (234)
T TIGR02521 216 LGDVAA 221 (234)
T ss_pred HhhHHH
Confidence 444333
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=6.2e-08 Score=92.13 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
++.+++.++..++++++|+..+.+++... +....+++.+|.++..+|++++|+..|.+++..+|++......+..+..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 46678888888888888888888887743 4556778888888888888888888888888888888777777777666
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008689 528 KMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~ 545 (557)
...+..+... .+.++..
T Consensus 181 ~~~~~~~A~~-~~~~~~~ 197 (234)
T TIGR02521 181 LRGQYKDARA-YLERYQQ 197 (234)
T ss_pred HcCCHHHHHH-HHHHHHH
Confidence 6555554442 4444443
No 80
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=1.4e-08 Score=78.53 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=65.9
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
|...|++.++|++|+..+++++.++|+++.+++.+|.+|..+|+|.+|+++|+++++++|++..+......+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 356789999999999999999999999999999999999999999999999999999999998776655543
No 81
>PRK01490 tig trigger factor; Provisional
Probab=98.83 E-value=5e-09 Score=110.38 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
.++.||.|.++|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|.++++..|+.... ++
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 5789999999999997 8998887754 68999999999999999999999999999999999999987665 45
Q ss_pred CcEEEEEEEEEeeeccccccccceeee
Q 008689 132 ATLQFDVELLSWTSVKDICKDGGIIKK 158 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~ 158 (557)
.++.|.|+|.++........++.+++.
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~ 255 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKK 255 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 899999999999876555555665553
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=5.3e-08 Score=97.28 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (557)
Q Consensus 413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 492 (557)
...+.++..+.+++...+.+. ......|+++|.+|..+|++.+|+.+++++++++|+++.+|+.+|.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356778888888886433222 123455899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 493 ~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
..+|++++|++.|++|++++|++..+...+..+.....+.++.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999988887777765554444443
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.81 E-value=3e-08 Score=86.68 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=84.4
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+.++|.++++.+++++|+..+.+++..+|.+..+++++|.++..++++++|+..|+++++++|++......+..+.....
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999988887776
Q ss_pred HHHHHHHHHHHHHhhh
Q 008689 531 EYNKKEAKFYGNMFAK 546 (557)
Q Consensus 531 ~~~~~~~~~~~~mf~~ 546 (557)
+.++... .|.+.+..
T Consensus 100 ~~~~A~~-~~~~al~~ 114 (135)
T TIGR02552 100 EPESALK-ALDLAIEI 114 (135)
T ss_pred CHHHHHH-HHHHHHHh
Confidence 6655543 55555544
No 84
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.79 E-value=3.3e-07 Score=88.36 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=105.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|.+|+..|++.+...|... ......+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44577889999999999999999999999877543 233346799999999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHH
Q 008689 479 SRN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~lg~------------------~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~ 534 (557)
|++ ..|+|.+|.++..++. ..+|++.|++.++..|+.. +++..+..|+.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 887 6689999999876651 2578899999999999986 666667777777777665
Q ss_pred HHHHHH
Q 008689 535 KEAKFY 540 (557)
Q Consensus 535 ~~~~~~ 540 (557)
.-.+.|
T Consensus 180 ~ia~~Y 185 (243)
T PRK10866 180 SVAEYY 185 (243)
T ss_pred HHHHHH
Confidence 444444
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.5e-07 Score=91.43 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=95.8
Q ss_pred hhhHHHHHHH-HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 400 GKKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 400 ~~~k~~G~~~-~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
....+.+..+ ++.|+|.+|+..|++.+...|.+.. ...+++.+|.+|+.+++|++|+..+.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3345556665 6679999999999999999886542 22347899999999999999999999999887
Q ss_pred CCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 479 SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
|++ ..|++++|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 774 78999999999999999999999999999999997665555444
No 86
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=4.2e-08 Score=102.10 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=110.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.-.++.-.|..|+++++|+.|.-+|++|+.+.|.+... ..-++..|.++|+.++|+..+++|+.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 44667778888889999999999999999888765533 456799999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
||.|+-.-|.+|..+..+++|++|+..|+...++-|++..+...+.++.+++......-
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999999999999999999999999999999988887665544
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=104.22 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=91.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
.--.|..|+-.++|++|+.||+.||...|.+... ++.||+....-.+..+|+..|++||++.|..
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 3457889999999999999999999998877654 8899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
+.+.|++|.+++.+|-|++|.++|-.||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999876
No 88
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=6.2e-08 Score=107.30 Aligned_cols=115 Identities=21% Similarity=0.190 Sum_probs=75.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH----HHHHHHHHHccCCC
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR 480 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~----A~~~~~~al~~~p~ 480 (557)
.|..+++.|++++|+..|.+++...+.+. .+++++|.+|..+|++++ |+..|++++.++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 46677788888888888888887655332 235566666666666664 56666666666666
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
+..++..+|.++..+|++++|+..|++++.++|++..+...+..+...+.+..+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666666666666666666666666666665555544444433
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=3.6e-07 Score=85.86 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=102.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|.+|+..|++.+...|.+.. ...+.+.+|.+|++.++|..|+..+++.+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999998886553 23346789999999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY 540 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~~~~~ 540 (557)
|++ ..|+|.+|.++..+. ...+|+..|+..+...|++. ++...+..|..++.+.+-.-.+.|
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 469999999987764 34589999999999999986 666677778777777665544444
No 90
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.74 E-value=1.1e-07 Score=105.23 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=90.1
Q ss_pred HhhhHHHHHHHHHcCcHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
...+...|..++..|++.+ |+..|++|+...|.+. .++.++|.++.+++++++|+..++++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445667888888898885 7888999998877543 23778888888888888888888888
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+.++|++..+++.+|.+|..+|++++|++.|++++..+|++......+..+...+
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888888765444444343333
No 91
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.73 E-value=2.5e-07 Score=79.56 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=93.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+.+.|...++.|+|..|+..|+....-.|...-. ..+.++|+-+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567888999999999999999999888777655432 2346789999999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 008689 479 SRN---VKALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~lg~---------------~~~A~~~~~~al~l~p~n~~~~ 519 (557)
|+| .-|+|++|.+++.+.. ..+|..+|++.+...|++.-+.
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 998 5599999999999987 8899999999999999986433
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=1.9e-07 Score=85.62 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=107.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+.+.|..++.+|+|++|...|.+|+..-.... ....+.|++.|.+++|+++.|..+++++|++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 345677777777788888888888877775321111 2234889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG 550 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~ 550 (557)
+|+++-++..++..++.-|+|-.|...+++...--+-+.+...+.-++.+++...... ..|..-+++....
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a--~~Y~~qL~r~fP~ 239 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA--QRYQAQLQRLFPY 239 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH--HHHHHHHHHhCCC
Confidence 9999999999999999999999999999999988777766666666666666555443 4677777766543
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=3e-08 Score=75.42 Aligned_cols=67 Identities=31% Similarity=0.388 Sum_probs=61.5
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++.|+|++|+..+++++..+|+|..+++.+|.||..+|++++|+..+++++..+|+++.+...+.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999988777766553
No 94
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.70 E-value=4.6e-08 Score=97.03 Aligned_cols=132 Identities=19% Similarity=0.172 Sum_probs=98.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
...+...|..+.+.|++++|++.|++|++..|.+... ..+++.++...++++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~---------------~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA---------------RNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 4557789999999999999999999999998865532 5678889999999999888888888887
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
|.++..+..+|.+|..+|++++|+..|+++++.+|+|..+...+..+.....+.++... .+++.+..
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~~ 277 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALRL 277 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 88888899999999999999999999999999999999999999988877777766553 55555443
No 95
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.7e-07 Score=92.44 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=108.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+.+++-+|..+|-..+...|+.+|.+++++.|..... ...-...-.....-+.|.-.++.|+|..|-+.|..+|.+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 46778889999999999999999999999998754321 111111123334557888899999999999999999999
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 478 ~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
||+| ++.|++||.++..||+..+|+.+++.|++|||.--.+...-.+|...+.+.+..- +-|.+..+
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q 349 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQ 349 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 9986 7889999999999999999999999999999987444444444555555544433 23444443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=4e-07 Score=91.18 Aligned_cols=116 Identities=13% Similarity=-0.030 Sum_probs=96.6
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH--HHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~--~~A~~~~~~al 475 (557)
...+..+|..+.+.+ ++++|+..+.+++...+.+... +++++.+..+++++ ++++..++++|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa---------------W~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI---------------WHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------hHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 445666777777766 5788888888888776654433 77888888888874 78899999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+.+|.|..||+.|+.++..+++|++|++++.++++++|.|..++.....+..++
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998888777665443
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=2.8e-07 Score=80.70 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=85.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
.+.+|.-++..|++++|...++.++.+||.+...||++|.|+..+|+|++|+..|.+|+.++|+++.....+..|.-.+.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHhhhc
Q 008689 531 EYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 531 ~~~~~~~~~~~~mf~~~ 547 (557)
+.....+ .|+.....+
T Consensus 118 ~~~~A~~-aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIK-ALKAVVRIC 133 (157)
T ss_pred CHHHHHH-HHHHHHHHh
Confidence 6665553 555555554
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.64 E-value=6.3e-07 Score=106.02 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=102.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
+..+...|..+++.|++++|+..|++|++..+...... .+ ..+......+..+++.++++.+++++|+..|++++.+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677889999999999999999999998876543211 11 1111122233456788999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987777666654
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.64 E-value=7.7e-07 Score=95.68 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=77.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHHHHHHH---------HhhHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVAC---------NLNNAACK 458 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~----------~~~~~~~~~~~~~---------~~nla~~~ 458 (557)
.+..+..+||.+|.+|+++.|...+.++++..|....... +..+-+....+.+ +.-+|...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3778889999999999999999999999999886654311 0011111111111 11223333
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
.+++++.+|+-+|++||.++|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 4466677777777777777777777777777777777777777777777777777
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.63 E-value=7.5e-07 Score=92.71 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEK 528 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~ 528 (557)
.+.++|.++++++++++|+.+++++++.+|++..+++.+|.+|..+|++++|++.|++++..+|.+. .+...+..+...
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 4567777778888888888888888887787778888888888888888888888888887777653 333344444333
Q ss_pred H
Q 008689 529 M 529 (557)
Q Consensus 529 ~ 529 (557)
.
T Consensus 262 ~ 262 (389)
T PRK11788 262 L 262 (389)
T ss_pred c
Confidence 3
No 101
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.62 E-value=6.6e-07 Score=93.10 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=65.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH----HHHHH----HHHHHHHhhHHHHHHhh
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE----KKQAK----ALKVACNLNNAACKLKL 461 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~----~~~~~----~~~~~~~~nla~~~~k~ 461 (557)
+...|..+++.+++++|+..|.++++..+..... ..++ ..+.. .....++.+++.+|.++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 4456666667777777777777776654432110 0000 00000 00122344566666666
Q ss_pred hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
+++++|+..+++++..+|++.. +..++.++...|++++|+..|+++++.+|++..+...+
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6666666666666666665533 35666666666666666666666666666665444333
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.61 E-value=3.4e-07 Score=108.28 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=107.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (557)
+..|..++..|++++|+..|+++++..|.+.. ++.++|.+|++++++++|+.+++++++.+|++.
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---------------ALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 35589999999999999999999998775432 378999999999999999999999999999874
Q ss_pred H--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 483 K--------------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 483 k--------------a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
. .+..+|.++...|++++|++.|+++++++|++..+...+..+...+.+.++... .|.+.+..
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~ 414 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRM 414 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence 3 234568899999999999999999999999999888888888877776666553 56665543
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=1e-06 Score=84.94 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--------hCHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC 471 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~~~~~A~~~~ 471 (557)
..+...|..+++.++|++|+..|+++++..|.+... ..+++++|.|+.++ +++++|++.+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456778999999999999999999999998866542 12366788888876 8999999999
Q ss_pred HHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Q 008689 472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKE 531 (557)
Q Consensus 472 ~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~ 531 (557)
++++..+|++..++ +.+|..|...|++.+|+..|++++...|+++ .+...+..+...+.+
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999985442 4678999999999999999999999988753 566677777777666
Q ss_pred HHHHH
Q 008689 532 YNKKE 536 (557)
Q Consensus 532 ~~~~~ 536 (557)
..+..
T Consensus 219 ~~~A~ 223 (235)
T TIGR03302 219 KDLAQ 223 (235)
T ss_pred HHHHH
Confidence 65544
No 104
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.60 E-value=9.1e-07 Score=70.52 Aligned_cols=86 Identities=34% Similarity=0.435 Sum_probs=77.0
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+++++|.++...+++++|+..+.++++..|.+..+++.+|.++..++++++|++.|++++.+.|.+..+...+..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999999999999999999999999987777777776666
Q ss_pred HHHHHH
Q 008689 530 KEYNKK 535 (557)
Q Consensus 530 ~~~~~~ 535 (557)
.+....
T Consensus 82 ~~~~~a 87 (100)
T cd00189 82 GKYEEA 87 (100)
T ss_pred HhHHHH
Confidence 554443
No 105
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.60 E-value=8.4e-07 Score=102.03 Aligned_cols=122 Identities=25% Similarity=0.323 Sum_probs=98.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..+++.|+|++|+..|.+++...+.... ++..+|.+++..++|++|+..+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667788999999999999999999999988765432 267888888888888888888888888
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
.+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888888888888888888888888776666666554444333
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.59 E-value=4.2e-07 Score=104.50 Aligned_cols=92 Identities=18% Similarity=0.119 Sum_probs=64.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
++.+++..+.+.++ .+|+.++++++.+.|++...+..+|.++..+|++++|++.|+++++++|.+..+...+..+..+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 36677777777777 66777777777777777777777777777777777777777777777777777777776666665
Q ss_pred HHHHHHHHHHHHHH
Q 008689 530 KEYNKKEAKFYGNM 543 (557)
Q Consensus 530 ~~~~~~~~~~~~~m 543 (557)
.+.++... .+.+|
T Consensus 885 g~~~~A~~-~~~~~ 897 (899)
T TIGR02917 885 GRKAEARK-ELDKL 897 (899)
T ss_pred CCHHHHHH-HHHHH
Confidence 55554443 44444
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=4.3e-07 Score=99.73 Aligned_cols=106 Identities=10% Similarity=-0.090 Sum_probs=97.6
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
.++.+......++.+++.+++++|+..+++++...|.+... ++++|.|..++|+|++|+..|+++
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence 34556788899999999999999999999999998876654 889999999999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
+..+|++.+++..+|.++..+|+.++|...|++|+.+...-
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999986554
No 108
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=7.3e-07 Score=84.57 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+.+.+..+++.|+|..|...|..-++-.|.+... ..++++|+.|++.+++|+.|...+..+.+-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 338889999999999999999999999988876543 23589999999999999999999999999888
Q ss_pred CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++ +.++|.+|.+...+++.++|...|.++++-.|+...+......+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 77 45699999999999999999999999999999997666554444
No 109
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=95.99 Aligned_cols=125 Identities=22% Similarity=0.117 Sum_probs=106.2
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHH
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAE 468 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~ 468 (557)
..+..+.++..+.+||..|-......|+..|.+|+...+. .+.||.|+|++++|.+ +--.|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHH
Confidence 3566788999999999999999999999999999988764 3445999999999965 778899
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
.+|-.||+++|...||+|+++.|+..++++.+|+++...+....|.+.+......-+.+.+.+
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 999999999999999999999999999999999999998888899776555544444444433
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.57 E-value=5.6e-07 Score=101.77 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=101.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+.+.+++.+|+..|++++...|.+... +.++|.+++..+++.+|+..+++++..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3447888999999999999999999999987755432 6689999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
|++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999988777766543
No 111
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.57 E-value=1.2e-06 Score=91.84 Aligned_cols=146 Identities=23% Similarity=0.234 Sum_probs=118.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..+..++..|..|...++|.+|+..|++|+.+.....-.. ....+..+.|||..|.+.|+|.+|..+|.+|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 44566677899999999999999999999999877432211 13456678999999999999999999999998
Q ss_pred ccC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDN---RDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 476 ~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n---~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
++- |.-...+.+.+..+..++++++|+..|.+++++ .++| ..++..|+.+...+.+.++.+. +
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~ 389 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-L 389 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-H
Confidence 753 333667889999999999999999999999986 2344 3567788889999988888885 8
Q ss_pred HHHHhhhccC
Q 008689 540 YGNMFAKMNT 549 (557)
Q Consensus 540 ~~~mf~~~~~ 549 (557)
|++...+...
T Consensus 390 ~k~ai~~~~~ 399 (508)
T KOG1840|consen 390 YKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHh
Confidence 8888887743
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=6.3e-07 Score=91.72 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=78.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+...|...+..++|..|+..|+++|+++|++..+|+++|.+|..+|++++|+.++++|+.++|++..+...+..+...+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44678899999999999999999999999999999999999999999999999999999999999988888888877776
Q ss_pred HHHHHH
Q 008689 531 EYNKKE 536 (557)
Q Consensus 531 ~~~~~~ 536 (557)
+..+..
T Consensus 85 ~~~eA~ 90 (356)
T PLN03088 85 EYQTAK 90 (356)
T ss_pred CHHHHH
Confidence 666544
No 113
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=1.1e-06 Score=88.14 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=102.3
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCCChHHHHH
Q 008689 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
+...+++++|+..+.++|.+.|.+.. ++++++.++.+++ .+++++..+++++..+|+|..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yt---------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYT---------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 45577999999999999999886543 3889999999998 6899999999999999999999999
Q ss_pred HHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 488 ~g~a~~~lg~~--~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|+.++.++++. +++++.++++++++|+|-.+....+-+...+...++ +-+.+.+++.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~ 170 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLE 170 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence 99999999974 789999999999999999998888888777765543 3445555543
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.5e-06 Score=94.23 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+.-.+|.+|-.|+|+.+...+..|+..... ..+....++++|.+|..+|+|++|..+|.+++..++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 45667788999999999999999998876422 234556688999999999999999999999999999
Q ss_pred CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 480 ~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
++ .-+++.+|+.|++.|+++.|+.+|+++++..|+|.+....|+.+.....
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 99 9999999999999999999999999999999999999999999887774
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=3.3e-07 Score=92.97 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 348899999999999999999999999999999865 999999999999999999999999998
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=2e-07 Score=72.95 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
....+|+|+|.+|..+++|++|+.++++++.+. |.-+.+++++|.+|..+|++++|++.+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356779999999999999999999999998752 223789999999999999999999999999986
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.52 E-value=9.5e-07 Score=80.43 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=88.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--- 481 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~--- 481 (557)
..+.+|-.+.|..+...+...++... ......+++++|.++..+++|++|+..+.+++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 34566666777777776644433211 12255668999999999999999999999999887653
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
..+++++|.+|..+|++++|++.|++|+.++|.+......+..+...+
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999987777777666633
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2.3e-06 Score=72.47 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=79.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK 523 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~ 523 (557)
.++++|..++++++|++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++ ..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 47899999999999999999999999998877 6799999999999999999999999999999986 35666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008689 524 TLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
.+...+.+..+.. +.|..++..
T Consensus 84 ~~~~~~~~~~~A~-~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAK-ATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHH-HHHHHHHHH
Confidence 6766655554444 356655554
No 119
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.7e-07 Score=90.67 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=103.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+.+.||..|..|+|++|++.|++|+.-... ...+++|++..+-++++.++|+.++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999975432 23347899999999999999999999987777
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
-+|+..++.+|.+|..+.+-..|+++|-+|.++-|+++.+...|..+..+...
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 78999999999999999999999999999999999999999998888665543
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=1.4e-06 Score=68.20 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=61.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+.+.|..++..|+|++|+..|++|+++...... .....+.++.|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999443322 1234577899999999999999999999999987
Q ss_pred c
Q 008689 477 L 477 (557)
Q Consensus 477 ~ 477 (557)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 5
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=8.9e-07 Score=80.22 Aligned_cols=112 Identities=21% Similarity=0.120 Sum_probs=101.0
Q ss_pred ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (557)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (557)
.-.++.++ +|.-+.++|+.|-..|-+..|...|.+++.+.|..+. +++-++..+...++|+.
T Consensus 56 ~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------------vfNyLG~Yl~~a~~fda 117 (297)
T COG4785 56 SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDA 117 (297)
T ss_pred hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------------HHHHHHHHHHhcccchH
Confidence 34455554 4888999999999999999999999999999876554 37788999999999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
|.+.++.++++||.+.-|..+||.+++.-|+|.-|.+++.+-..-||+++
T Consensus 118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999999999999999987
No 122
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.43 E-value=2.1e-06 Score=97.15 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+...|++++|+..|.+++...|.+.. +++++|.++..+|++++|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------------l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------------LRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 34457788889999999999999999998776542 478999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
++..+++.+|.+++.+++|++|++.++++++.+|+|..+...-
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999998655443
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.43 E-value=2.6e-07 Score=69.53 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=56.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (557)
..|..+++.|+|++|+..|+++++..|.+. .+++.+|.|+..+|+|++|+..+++++..+|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999999876543 3488999999999999999999999999999874
No 124
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.43 E-value=2e-06 Score=85.28 Aligned_cols=148 Identities=23% Similarity=0.302 Sum_probs=110.6
Q ss_pred HHHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
..|..+.+.|..+.+. +++++|+.+|.+|+++...... ......|+.++|.++.++++|++|+..+.++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4577788888888888 8999999999999999875442 23456778899999999999999999999997
Q ss_pred ccCCC------ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 476 ~~~p~------~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
...-+ +++ .+++.+.|++.+|++..|.+.|++....+|.... ..+...+...+...+..+...|........
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 64321 244 4578899999999999999999999999997543 344555666777777777777777777777
Q ss_pred CCCCCC
Q 008689 549 TGSDLD 554 (557)
Q Consensus 549 ~~~~~d 554 (557)
+...+|
T Consensus 262 ~~~~ld 267 (282)
T PF14938_consen 262 SISRLD 267 (282)
T ss_dssp TSS---
T ss_pred ccCccH
Confidence 666665
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.39 E-value=3e-06 Score=77.48 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=73.4
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
...+++++|.++...++|++|+.+|++++...|+. ..+++++|.+|..+|++++|+..|.+|+.++|++......+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 45568999999999999999999999999887653 579999999999999999999999999999999987777776
Q ss_pred HHHHHHH
Q 008689 524 TLKEKMK 530 (557)
Q Consensus 524 ~l~~~~~ 530 (557)
.+...+.
T Consensus 114 ~~~~~~g 120 (172)
T PRK02603 114 VIYHKRG 120 (172)
T ss_pred HHHHHcC
Confidence 6655543
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=1.5e-06 Score=92.00 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=83.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH--HHHHHHc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD 476 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~--~~~~al~ 476 (557)
+..+..+|..+..+|++.+|...|..|+.+.|.+... ...+|.|+++.|+-..|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 4556778888888888888888888888887766544 5678888888888777777 8888888
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
+||.|.+|||.+|.++.++|+.+.|-++|..|+.|++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8888888888888888888888888888888888887775
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=3.8e-06 Score=74.39 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
......|..++..|+|++|+..|++++...+. . .+...+.++||.+++.+++|++|+..++.+ .-.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~-----------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~ 115 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPD-P-----------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEA 115 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-H-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc
Confidence 33445666666667777777777666653311 0 223334556666777777777777666552 2233
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
-...++..+|.+|..+|++++|+..|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 345556666777777777777777666653
No 128
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=4.2e-06 Score=93.76 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=107.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-----------Ch-HH-HHHHHH------HHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------GD-EE-KKQAKA------LKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-----------~~-~~-~~~~~~------~~~~~~~nla~~~~ 459 (557)
+.....++...+++|+|..|+..|.++++..|..... .. ++ ...++. .-...+..+|.+|.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4577889999999999999999999999988876311 00 00 000111 01222334477888
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
.+++|++|+..|+++++.+|+|+.+++-++.+|..+++.++|++.++++...+|.+... ..+..+...+.+..+ ....
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence 89999999999999999999999999988899999999999999999999999987654 334444433333322 5567
Q ss_pred HHHHhhhccCC
Q 008689 540 YGNMFAKMNTG 550 (557)
Q Consensus 540 ~~~mf~~~~~~ 550 (557)
|++++......
T Consensus 192 ~ekll~~~P~n 202 (822)
T PRK14574 192 SSEAVRLAPTS 202 (822)
T ss_pred HHHHHHhCCCC
Confidence 88887765433
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=1.5e-06 Score=91.58 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=111.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+.+.+..|+..+.+++|.+|.++++.++++.+- ....|++++.|.+++++++.|..+|.+++.++
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPL---------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCcc---------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 334555666677789999999999999887653 33448999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
|+|..+|.+++.+|+.+++-.+|...++.|++.+-++..++.++-.+..........-+ .|.++...-
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll~~~ 617 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLLDLR 617 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHHHhh
Confidence 99999999999999999999999999999999998888888888888777777666553 666666443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=7.2e-06 Score=83.14 Aligned_cols=130 Identities=15% Similarity=0.036 Sum_probs=105.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
....+-.+..+|..|+++.|...+...+...|.+..+ ..-++..+++.|+.++|++.+++++.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445667778888888888888888877666654422 3356788999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (557)
|+..-..+++|++|+++|++.+|+..++..+.-+|+|+..+..|.+....+....+.....-..+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999988888776666554433333
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.35 E-value=6.1e-06 Score=89.58 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+.+.|..+|..|++..|..+|.+|+..+...... ++. +...+++.+|+|.|.-.+.++..|...|..++..+|
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 457789999999999999999999999874422211 111 234466788999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG 550 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~ 550 (557)
..+.+|.|+|......++..+|...++.++.++..|++++..++.+..+..+....++ .|...+++....
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k-~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK-KFETILKKTSTK 597 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc-HHHHHHhhhccC
Confidence 9999999999777778899999999999999999999999999988777766665543 555566555433
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.34 E-value=7e-07 Score=67.77 Aligned_cols=67 Identities=33% Similarity=0.369 Sum_probs=57.5
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (557)
Q Consensus 409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (557)
+++.|+|++|+..|++++...|.+... ++++|.||++.|++++|...+.+++..+|++..++.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEA---------------RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHH---------------HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 478999999999999999998865533 77999999999999999999999999999987766655
Q ss_pred HH
Q 008689 489 AQ 490 (557)
Q Consensus 489 g~ 490 (557)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 133
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.33 E-value=4.7e-06 Score=74.03 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh----------hCHHHHHHHHHHHHccCCCChHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~~~p~~~ka 484 (557)
|+.|.+.|..+....|.+... ++|-|.+++.+ .-+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 566777777777766654321 33444444333 45788999999999999999999
Q ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 485 ~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
++.+|.||..++. |++|.++|++|..++|+|...++.|....+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 9999999999975 7899999999999999999888888776443
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.3e-06 Score=78.42 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=76.4
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
-++..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+|+++.|+++.+..++.-..-...+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999888776555555
Q ss_pred HHHHH
Q 008689 533 NKKEA 537 (557)
Q Consensus 533 ~~~~~ 537 (557)
+..++
T Consensus 185 ~~A~~ 189 (257)
T COG5010 185 EDAET 189 (257)
T ss_pred HHHHH
Confidence 55443
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9e-06 Score=78.20 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=96.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKV 474 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~a 474 (557)
.++.+.-.|..|+..+++..|...|.+|+++.+.+... +.-+|.++..+. .-.++...++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 35667789999999999999999999999998876643 445555544443 467899999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
|.+||+|+.+++-+|..+...|+|.+|...+++.+.+.|.+..-...+++...+
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887655555554333
No 136
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.27 E-value=2.1e-05 Score=82.68 Aligned_cols=110 Identities=25% Similarity=0.231 Sum_probs=92.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...|..+.+.|..|++.|+|.+|..+|++|+++......... .-....++|+++.+..+++|++|+.++.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~-------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH-------PEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh-------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 456888999999999999999999999999999876322222 2344558899999999999999999999998
Q ss_pred ccC-----C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 476 DLD-----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 476 ~~~-----p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
++- + .-.+.+-++|.+|..+|+|++|.+.|++|+...
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 742 2 347888999999999999999999999999864
No 137
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.27 E-value=4.4e-06 Score=64.28 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=62.5
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (557)
.+.+++.++|+.|+..+++++.+.|.+... +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 357899999999999999999998876655 88999999999999999999999999999998877
Q ss_pred HHHHH
Q 008689 486 YRRAQ 490 (557)
Q Consensus 486 ~~~g~ 490 (557)
.-+++
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66554
No 138
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.26 E-value=2.9e-06 Score=88.72 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (557)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i 245 (557)
.+..||.|+++|++.. +|+.++++ .++.|.+|.+.+++||+++|.||+.|+++.+.+|....|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence 4678999999999977 78888765 78999999999999999999999999999999985557765433
Q ss_pred CCCCeEEEEEEeecccc
Q 008689 246 PPNATLQIALELVSWKT 262 (557)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (557)
++.++.|.|+|.++..
T Consensus 216 -~gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKE 231 (408)
T ss_pred -CCCeEEEEEEEEEecc
Confidence 4899999999999865
No 139
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.23 E-value=6.4e-05 Score=61.58 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--- 477 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--- 477 (557)
.....|...++.+.|.+|...|++|+++....+ .+|.-.-...-.-||.-|+.++.++++|++|+....++|.+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344677888899999999999999999865432 33333445566778999999999999999999999999863
Q ss_pred ----CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 478 ----DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 478 ----~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+.+ ++.+.|+||.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 322 5789999999999999999999999998764
No 140
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=9.5e-06 Score=83.66 Aligned_cols=89 Identities=10% Similarity=0.058 Sum_probs=77.7
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
..++.-|+..|.-.++|++|+.+++.||..+|++...|.|+|-.+..-.+.++|+..|++|++|.|+...++..|+...-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 34566788899999999999999999999999999999999999999999999999999999999998777777776666
Q ss_pred HHHHHHHHH
Q 008689 528 KMKEYNKKE 536 (557)
Q Consensus 528 ~~~~~~~~~ 536 (557)
.+..+++.-
T Consensus 510 NlG~ykEA~ 518 (579)
T KOG1125|consen 510 NLGAYKEAV 518 (579)
T ss_pred hhhhHHHHH
Confidence 665555543
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.21 E-value=5.8e-06 Score=84.11 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
...+.+..+.+.|+.|++.|+|++|+..|++|+.+.|++... ..+|+|+|.||.++|++++|+.++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445568889999999999999999999999999998865421 12488999999999999999999999
Q ss_pred HHccC
Q 008689 474 VLDLD 478 (557)
Q Consensus 474 al~~~ 478 (557)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99974
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=2.3e-05 Score=66.31 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+.+.|..+-..|+.++|+..|.+|+...... ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46788889999999999999999999853221 123446789999999999999999999999998787
Q ss_pred ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 481 ---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+.......+.++..+|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988875
No 143
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2.9e-06 Score=81.38 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
.+++|+|.|++--++|+.++..+.+|+..-. .-...||++|.+....|++..|..+|+-||..||++.++...|..+
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 4589999999999999999999999988633 3477899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 008689 526 KEKMKEYNK 534 (557)
Q Consensus 526 ~~~~~~~~~ 534 (557)
..+......
T Consensus 439 ~~r~G~i~~ 447 (478)
T KOG1129|consen 439 AARSGDILG 447 (478)
T ss_pred HhhcCchHH
Confidence 766554443
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=3.4e-05 Score=85.85 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH---------
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL--------- 470 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~--------- 470 (557)
..+....+.+...+++++|+..+..+++..|....+ |+-+|..|+..+++..|...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv~~l~~~~~~ 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLLNLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhhhhhhhcccc
Confidence 445556667778999999999999999888766544 44444444444444433333
Q ss_pred ---------HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 471 ---------CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (557)
Q Consensus 471 ---------~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (557)
|...+. .+.+-.|+|.+|.||-++|++++|.+.|+++++++|+|..+.+.++-..... . -++-..+++
T Consensus 97 ~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d-L~KA~~m~~ 173 (906)
T PRK14720 97 LKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D-KEKAITYLK 173 (906)
T ss_pred cchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h-HHHHHHHHH
Confidence 222222 3444478888888888888888888888888888888888877777665555 2 223333555
Q ss_pred HHhhh
Q 008689 542 NMFAK 546 (557)
Q Consensus 542 ~mf~~ 546 (557)
+.+..
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 54443
No 145
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.14 E-value=3.7e-06 Score=54.08 Aligned_cols=34 Identities=41% Similarity=0.614 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
+++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678888888888888888888888888888864
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=2.7e-05 Score=79.11 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (557)
--.+..+++.+++.+|++.+++|+.+.|.... +..|+|.++++.|++.+|+...+..+.-+|+++
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 35678899999999999999999999987643 367999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
..|..+|++|..+|+-.+|...+...+.+.-+-..+...+.+.+++.
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999888888888888887766555555555554444
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.12 E-value=6e-05 Score=77.36 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------Ch--HHHHHHH-------HHHHHHHhhHHHHH
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EEKKQAK-------ALKVACNLNNAACK 458 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~--~~~~~~~-------~~~~~~~~nla~~~ 458 (557)
...-+|..++..+++++|+..+.++++..|.+... .. ....+.. ......+.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34467889999999999999999999887654311 00 0000100 11233456788999
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV----KLEYKTLKEKMKEYNK 534 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~----~~~l~~l~~~~~~~~~ 534 (557)
..+|++++|+..++++++++|++..++..+|.+|..+|++++|+..+++++.+.|.+... .-.+..+...+.+.++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998854322 2234555444444443
Q ss_pred H
Q 008689 535 K 535 (557)
Q Consensus 535 ~ 535 (557)
.
T Consensus 205 A 205 (355)
T cd05804 205 A 205 (355)
T ss_pred H
Confidence 3
No 148
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.12 E-value=8.7e-06 Score=87.04 Aligned_cols=129 Identities=31% Similarity=0.448 Sum_probs=110.1
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCHHHH
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQA 467 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A 467 (557)
.+.+..+.++..++++||.+|++++|..|.-.|..++.++|.+... ...+..|.+.||+.+ ++|..+
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~ 112 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKA 112 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhh
Confidence 3566778899999999999999999999999999999999855432 456688999888775 599999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+..|+-|+...|...+++++|+.+|..++.++-|.+++.-....+|++.++...+.+++..+
T Consensus 113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999966555444444333
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=4.9e-06 Score=66.10 Aligned_cols=76 Identities=30% Similarity=0.410 Sum_probs=66.5
Q ss_pred hhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
+++|+.|+..++++++.+|. +...++++|.||..+|+|++|+..+++ ++++|.+..+...+++|.-.+.+.++...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999999995 567888999999999999999999999 89999998888888999888888777654
No 150
>PRK01490 tig trigger factor; Provisional
Probab=98.10 E-value=1.5e-05 Score=84.03 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (557)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i 245 (557)
.+..||.|+++|.+.. +|+.+++. .++.|.+|.+.+++||+++|.||+.|+++.+.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---------
Confidence 4689999999999998 77777755 88999999999999999999999999999999874446755433
Q ss_pred CCCCeEEEEEEeecccc
Q 008689 246 PPNATLQIALELVSWKT 262 (557)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (557)
++.++.|.|+|.++..
T Consensus 227 -agk~~~f~v~v~~V~~ 242 (435)
T PRK01490 227 -AGKEATFKVTVKEVKE 242 (435)
T ss_pred -CCCeEEEEEEEEEecc
Confidence 4789999999999865
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=7.4e-05 Score=72.01 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=111.1
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-------CC--hHHHH---------------HH
Q 008689 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------FG--DEEKK---------------QA 443 (557)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-------~~--~~~~~---------------~~ 443 (557)
.+++.+++ ...+.+.|..|+..|-|++|...|...++.-..... +. ..+|+ ..
T Consensus 99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 34455544 556778889999999999999998876652211000 00 00111 11
Q ss_pred HHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 008689 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEY 522 (557)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l 522 (557)
+-..+..|+.+|..++...+++.|+....+|+..||+++.|-.-+|.+++..|+|+.|++.++.+++.||+-. ++...|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 2245677999999999999999999999999999999999999999999999999999999999999999874 677777
Q ss_pred HHHHHHHHHHHHHH
Q 008689 523 KTLKEKMKEYNKKE 536 (557)
Q Consensus 523 ~~l~~~~~~~~~~~ 536 (557)
..|...+.+..+-.
T Consensus 256 ~~~Y~~lg~~~~~~ 269 (389)
T COG2956 256 YECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHhCCHHHHH
Confidence 77877776665544
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.10 E-value=4.1e-05 Score=81.81 Aligned_cols=118 Identities=17% Similarity=0.051 Sum_probs=90.2
Q ss_pred HhhhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------C---hHHHHHHHHH------------
Q 008689 399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------ 446 (557)
Q Consensus 399 a~~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~--------------~---~~~~~~~~~~------------ 446 (557)
|-.+.-+|..++.+. ++.+|+.+|++|+++.|..... . ......+...
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 455556666666544 4889999999999987764211 1 1111111111
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
...+|.-+|..++..+++++|..++++|+.++| ++.+|+.+|+++...|++++|++.|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 114566788888899999999999999999999 5789999999999999999999999999999999763
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00014 Score=67.87 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHHH------HHHHHhhHHHHHHhhhC
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKAL------KVACNLNNAACKLKLKD 463 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~nla~~~~k~~~ 463 (557)
+-.|..+-..++|+.|+..|...+.-.|.+... +-+-.+++..+ -..++..+|..|+.+++
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 445666777889999999999988776654322 11222222222 23457789999999999
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
|++|+-++++++-+.|.|+-.+-|+|..++-+| +++-|+++|.+|++++|.|......+-.|
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 999999999999999999999999999998877 57789999999999999775444433333
No 154
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.08 E-value=1.2e-05 Score=79.62 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+......+++.+++.++...+.++........ ...++..+|.++.+.|++++|+..++++|+++|+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344455667888999999999988775332111 1234778999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|..++..++.++..+|++++|++.++...+..|+|+.+...+..+...+.+.++.-. .|.+...
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~-~~~~~~~ 242 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE-YLEKALK 242 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc-ccccccc
Confidence 999999999999999999999999999998888888888888888888876665543 5555444
No 155
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.07 E-value=3.9e-05 Score=86.16 Aligned_cols=113 Identities=8% Similarity=-0.020 Sum_probs=91.3
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (557)
|..+...|+|++|+..|+++++..|.+... +.-++..|...+++++|+..+.+++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 557777899999999999999998876432 4567899999999999999999999999986544
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
.-++..+..++++.+|++.|+++++++|++.++..++-.+..+......
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Confidence 4445555557788779999999999999999888777766655544433
No 156
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.06 E-value=0.00016 Score=64.02 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
..+...|......++...++..|.+|+.+..... .+..............+...++..+...++|+.|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445567777788899999999999999764321 223345667788888899999999999999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+++..+|.+..++..+-.+|..+|+..+|++.|+++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00022 Score=63.05 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=97.9
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
.+.+.+..........+..+++..+...+.+.+.-.+... +.....+.+|.+++..|+|++|+..++.
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455677777788888888999988887877776554332 2344577899999999999999999999
Q ss_pred HHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 474 VLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGN 542 (557)
Q Consensus 474 al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (557)
++...|+. ..+.+|+|.+++.+|+|++|+..++.. .-.+-...+...+..+..+..+..+.. ..|++
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~-~~y~~ 143 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR-AAYQK 143 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH-HHHHH
Confidence 99987654 568999999999999999999999662 222223345555666655555544443 24443
No 158
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.05 E-value=8.7e-05 Score=80.30 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
.-++..+...-+.+++.+|.-+|.+|+.+.|.+... +.+++..|.++|++..|...+.+++.++|
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~---------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL---------------IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH---------------HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 445666777777888888888888888888765433 77999999999999999999999999999
Q ss_pred C----ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 480 R----NVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 480 ~----~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
. ...++-+ .++.+...++-+.|++.++.+++.. .+.....-+. +...+--..++-.+.-..+.....
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~-~~~~~~ed~n-i~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE-KDEASLEDLN-ILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc-cccccccHHH-HHHHHHHHhHHHHHhhHHHHHHhc
Confidence 3 3444444 4999999999999999999999833 2222223333 333333333333334455555444
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.02 E-value=0.00017 Score=75.24 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=87.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
-+.+.+.....+|...+..|+|++|.+...++.+..+. +. ..|...|....++|+++.|..++.+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~--------------l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV--------------VNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH--------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35567788889999999999999999776665543211 00 0133334455788888888888888
Q ss_pred HHccCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 474 al~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
+.+.+|++. -.....+..+...|++++|++.++++.+.+|+|..+...+..+..+..+..+
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 888777774 3334557888888888888888888888888887777777666655544443
No 160
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=1.7e-05 Score=76.27 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (557)
.+.|..|++.|.+.+|...++.++...+.- ..+.-|+.+|.+..+...|+..+.+.|..-|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 367999999999999999999999866532 2256788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
..+.-.|++|..++++++|.+.|+.+++++|.|.++
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 989999999999999999999999999999887543
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.00 E-value=6.4e-05 Score=73.14 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=75.8
Q ss_pred HHHhhHHHHH-HhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008689 449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE 521 (557)
Q Consensus 449 ~~~~nla~~~-~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~ 521 (557)
...++.|..+ ++.++|++|+..|+..+...|++ ..|+|++|.+|+.+|+|++|+..|+++++..|++. ++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3356788876 67799999999999999999998 57999999999999999999999999999999864 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
+..+...+....+. .+.|+++....
T Consensus 223 lg~~~~~~g~~~~A-~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKA-KAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHH-HHHHHHHHHHC
Confidence 55555544433333 34565555443
No 162
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.00 E-value=7.9e-05 Score=78.12 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=107.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+........+..+...|++++|.....++++..+++.... . ..-+....+..++...++..++++++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 3455566788899999999999999999999877654320 0 01123334556888999999999999
Q ss_pred cCCCCh--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689 477 LDSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT 549 (557)
Q Consensus 477 ~~p~~~--ka~~~~g~a~~~lg~~~~A~~~~~--~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (557)
.+|+++ ..+..+|..+..+|+|++|++.|+ ++++.+|++... ..+..+..++.+.++.. +.|++.+.-+..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~-~~~~~~l~~~~~ 402 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEAA-AMRQDSLGLMLA 402 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHH-HHHHHHHHHHhc
Confidence 999999 888899999999999999999999 688889988664 48888878777766554 578776665543
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.99 E-value=0.00015 Score=75.91 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
+.+.+.....+|-..+..|+|..|.+...++.+..+.... .+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~---------------~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL---------------NLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5557888889999999999999999999998886543211 1223344444455555555555555
Q ss_pred HccCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 475 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
.+..|++. .+...++..++..|+++.|++.+++.++..|+++.+...+..+.....
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 54444442 222223555555555555555555555555555544444444443333
No 164
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.99 E-value=1.4e-05 Score=51.18 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
+++++.+|.+|..+|+|++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888875
No 165
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.97 E-value=7.4e-06 Score=52.53 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.8
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHH
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~ 503 (557)
.|++||+++|+|+.+|+++|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 166
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.97 E-value=8.4e-05 Score=73.82 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=91.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---ChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
.......|..+|++++|..|+-.|+.||+++...... .......+..+..-+...|..||+++++.+.|+.+.-+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 3344567889999999999999999999998754322 1122334445555557789999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
.++|.+..-+.|+|.|+..|.+|.+|-..+-.|.-
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766653
No 167
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.96 E-value=5.6e-05 Score=77.60 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+...|++.+|...|++++...|.+.. ++.++|.+|...|++++|+.++.+++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 44456788899999999999999999998876542 377899999999999999999999999876
Q ss_pred CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 480 RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 480 ~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
.+ ...++.+|.++..+|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 43 24567899999999999999999999987777
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.96 E-value=6.6e-05 Score=78.45 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.++.+...+|..++|...++..+..+.-.+..... +.-.|.....+|+-++|...+..+++.|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 46677788899999999998888888755544322 234566777899999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
+.-+|.-.|..+..-.+|++|+++|..|++++|+|..+..-+..++..++...
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988888877776544
No 169
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.94 E-value=5.7e-05 Score=53.52 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
..+|.+|.++.++|+|++|+..++.+|+++|+|..+......+..++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999888888877776643
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.93 E-value=0.00067 Score=64.10 Aligned_cols=126 Identities=20% Similarity=0.204 Sum_probs=101.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+.+.|...++.|+|.+|++.|+.....-|.++-. -.+...++.+++|.++|+.|+.+.++=+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999888766654422 2335678999999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRN---VKALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~lg~--------~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~ 536 (557)
|++ .-++|-+|.++...=+ -.+|+..|+..+.--|+.. ++...+..++.++...+-.-
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 887 5688899999776533 2588999999999999975 67777777777776665443
No 171
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.1e-05 Score=81.70 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=67.6
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA 244 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v--p~~~~~g~~g~~~~~~~~~ 244 (557)
+..||.|+++|.+.. ||..|... +.+.+.+|+|+++|||+.+|.||+.|+...|.| |.+ |.....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~d--y~a~~L-------- 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPED--YHAEEL-------- 226 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccc--cchhHh--------
Confidence 889999999999966 77777765 889999999999999999999999999999766 444 443333
Q ss_pred CCCCCeEEEEEEeecccc
Q 008689 245 VPPNATLQIALELVSWKT 262 (557)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (557)
.|.+..|.|.|..+..
T Consensus 227 --aGK~a~F~V~vkeVk~ 242 (441)
T COG0544 227 --AGKEATFKVKVKEVKK 242 (441)
T ss_pred --CCCceEEEEEEEEEee
Confidence 3678899999999865
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00023 Score=64.05 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=70.4
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
-+.-+++.|+|++|...|..||.+.|.. .-.|.+||.|+++|+.++.|++++.+|++|+|.+.-+...-+.+..+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4667789999999999999999999875 34678999999999999999999999999999985444444445555
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008689 529 MKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~ 545 (557)
+.+.+..- .-|+++..
T Consensus 181 ~ek~eeal-eDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEAL-EDYKKILE 196 (271)
T ss_pred hhhHHHHH-HHHHHHHH
Confidence 54444433 35555554
No 173
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=3.1e-05 Score=53.03 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777888888888888888888888888888777766654
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=5e-05 Score=77.77 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.+..++..++..+|++...+++...+.+. .++.-.|..+++.++|+.|+..++++..+.|++.++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~ 270 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET 270 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence 45555566677777777777776554332 235567888888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
|+.+|++|..+|+|++|+..++.+-.+.+.+
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 9999999999999999998887666554443
No 175
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00041 Score=64.03 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 400 GKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
..+.+.|..|=.. .++++|+.+|.+|.++.... +......+|++..|..-..+++|.+|+..|+++....
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555554443 67899999999999887643 3335567788888888888999999999999997755
Q ss_pred CCC------hHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008689 479 SRN------VKA-LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGS 551 (557)
Q Consensus 479 p~~------~ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~~ 551 (557)
-+| +|- +++.|.||+...+.-.|...+++...++|...+- ++...++..+...++.+-..|....+.+.+.+
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds-REckflk~L~~aieE~d~e~fte~vkefDsis 263 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS-RECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS 263 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc
Confidence 444 444 4567899999899999999999999999987643 34444555566666666666666666666655
Q ss_pred CCC
Q 008689 552 DLD 554 (557)
Q Consensus 552 ~~d 554 (557)
.+|
T Consensus 264 rLD 266 (288)
T KOG1586|consen 264 RLD 266 (288)
T ss_pred hHH
Confidence 554
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.00025 Score=60.08 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=71.1
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK 523 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~---n~~~~~~l~ 523 (557)
+.+++|.++-.+|+.++|+..|++++...... ..++..+|.+|..+|++++|+..|++++.-.|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 47799999999999999999999999975433 779999999999999999999999999999898 666666666
Q ss_pred HHHHHHHHHHH
Q 008689 524 TLKEKMKEYNK 534 (557)
Q Consensus 524 ~l~~~~~~~~~ 534 (557)
.+...+.+.++
T Consensus 83 l~L~~~gr~~e 93 (120)
T PF12688_consen 83 LALYNLGRPKE 93 (120)
T ss_pred HHHHHCCCHHH
Confidence 55555444444
No 177
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.85 E-value=4.4e-05 Score=73.90 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=59.6
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
..|.-|+|+|.|++||.+|.+++..+|.|+-.+.+||.||+++..|..|..++..|+.|+-.-
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 578899999999999999999999999999999999999999999999999999999997543
No 178
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.4e-06 Score=75.65 Aligned_cols=81 Identities=27% Similarity=0.495 Sum_probs=71.0
Q ss_pred ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689 34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (557)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~ 109 (557)
+.-.|+.++|+..|.| +-| ..|..|.+||..... .++++|+|+..++|+.+++|.---++-||..|..|+++|.+
T Consensus 7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3557899999999999 555 489999999998765 45799999999999999999988999999999999999999
Q ss_pred EEEecC
Q 008689 110 VFTIPP 115 (557)
Q Consensus 110 ~v~ip~ 115 (557)
.|.+.-
T Consensus 86 qF~~d~ 91 (329)
T KOG0545|consen 86 QFWCDT 91 (329)
T ss_pred Hhhhhh
Confidence 887654
No 179
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.00028 Score=68.16 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=98.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC--------------------CChH----HHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------------FGDE----EKKQAKALKVACN 451 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~--------------------~~~~----~~~~~~~~~~~~~ 451 (557)
.+..+.+...||.+-++|..++|++.-...++- |+... ...| ...+.......+.
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al 144 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL 144 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 345667778899999999999999876554432 11100 0001 1111223445556
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
-.|...|.+.++|++||+.+.+...+.+.. +..|..+|+.++.-.+++.|+..+++|++.+|++..+...+.++.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 678889999999999999999999988765 456778899999999999999999999999999977777777765
Q ss_pred HHHHHHH
Q 008689 527 EKMKEYN 533 (557)
Q Consensus 527 ~~~~~~~ 533 (557)
.......
T Consensus 225 ~~~g~y~ 231 (389)
T COG2956 225 LAKGDYQ 231 (389)
T ss_pred HhccchH
Confidence 5544443
No 180
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00044 Score=68.82 Aligned_cols=137 Identities=17% Similarity=0.141 Sum_probs=103.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH---------HHHHHHHHHHH----------HhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE---------KKQAKALKVAC----------NLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~---------~~~~~~~~~~~----------~~nla~~~~ 459 (557)
..-+-+.|..+|..|++.+|+..|.++..+.++....-++. .+....+...+ +.--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 44566789999999999999999999998877643221110 11111111111 111233455
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
..++|..|+.+..++|..+|.+..+|.-+|.++..+++.++|+-.|+.|+.|.|..-++..-|-.+.-...+.++.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 6789999999999999999999999999999999999999999999999999999988888877776555555543
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=2.4e-05 Score=50.16 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
.+|+++|.+|+.+++|++|+.+|++||+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999974
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0002 Score=71.00 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|+.|-..++|.+|..+|.+|.++....... .....+|.+.+.||.+. ++++|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 3456677777787777999999999999999887643221 22445577777777666 8999999999987
Q ss_pred ccC--CC----ChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC--C-H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLD--SR----NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPD--N-R---DVKLEYKTLKEKMKEYNKKEAKFYGN 542 (557)
Q Consensus 476 ~~~--p~----~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~p~--n-~---~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (557)
.+- .. -.+++.++|.+|... +++++|++.|++|+.+... . . .+...+..+..++.+..+.- ..|.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~-~~~e~ 180 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI-EIYEE 180 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH-HHHHH
Confidence 752 12 167888889999888 8999999999999887321 1 1 23334444555555554443 34555
Q ss_pred Hhh
Q 008689 543 MFA 545 (557)
Q Consensus 543 mf~ 545 (557)
+..
T Consensus 181 ~~~ 183 (282)
T PF14938_consen 181 VAK 183 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 183
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00024 Score=70.64 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
....+.-.|+.+.+.++.++|+-.|+.|..+-|.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 3566778899999999999999999999987654
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.0002 Score=73.19 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh---------hCHHHHHHHHHHHHccCCCChHH
Q 008689 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---------~~~~~A~~~~~~al~~~p~~~ka 484 (557)
...+|+.+|.+|+...+.++. ...+|.-+|.||+.+ ..-.+|++...+|++++|.++.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence 467888899999933222222 233466777777664 24567889999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++.+|.++...++++.|+..|++|+.++|+...+......+
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999999998877776654
No 185
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.76 E-value=0.00046 Score=72.01 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=100.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
........+..+...|++++|.....++++. +.+. ..-+...++..+++++++..+++.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-----------------~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-----------------RLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-----------------HHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 4445566788999999999999999999873 2211 011223334559999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|+++..++-+|++++..++|++|++.|+++++++|++.. ...+..+..++.+.++.. ..|++-+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~-~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAA-AMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 9999999999999999999999999999999999999864 347787877776666553 46666554
No 186
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00017 Score=74.42 Aligned_cols=130 Identities=20% Similarity=0.125 Sum_probs=94.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+..-|.-|+--+++.+|.++|.+|..+.+.-... +.-.|..|.-.++.++|+..|..|-++-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa---------------Wl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA---------------WLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH---------------HHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 4566777888888888888888888888877654433 5566777777778888888888877777
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
|....-++-+|.-|+.+++++.|.+.|.+|+.+.|+++-+..+++.+.-..+...++.+ .|++.+
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l 441 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK-YFQKAL 441 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH-HHHHHH
Confidence 77777777778888888888888888888888888877777777766555554444442 444444
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.72 E-value=4.5e-05 Score=75.51 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
..+.....++-+.||.||-.|+|++|+..-+.-+.+-..... . .-.-.+|.|+|.||.-+++|+.|+++|+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-------r--AaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-------R--AAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-------H--HHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 345556677778999999999999999988877766432211 0 1123458999999999999999999999
Q ss_pred HHHcc----CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 473 KVLDL----DSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 473 ~al~~----~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
+++.+ ... -+...|.+|.+|.-+.+|++|+.++.+-|++.
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 97653 222 25678999999999999999999998877664
No 188
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.70 E-value=0.0003 Score=74.92 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
.+-+++.+|++|..+|++++|++++++||+..|..+..|+.+|++|.+.|++.+|.+.++.|.++|+.|.-+.....+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 444677899999999999999999999999999999999999999999999999999999999999998755544443
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.69 E-value=0.00026 Score=75.55 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=99.4
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.+..+.+.++-++|..+..+|-.+++.. ...|+-+|.++...+++.+|...|..|+.+||+++.+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 3445555667777777888887776533 3448888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 485 LYRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~--~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
..-+|.+|+..|+-.-|.. .+..|+++||.|.+++..++.+.+++...++.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 9999999999999888888 99999999999999999999998888776643
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.69 E-value=0.00074 Score=60.22 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=91.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
.......||.+...|+|.+|..+|.+|+.=+--+. ..+++-+|.+++..+++..|....+++.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34556789999999999999999999986321111 1236789999999999999999999999998
Q ss_pred CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 479 p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|. .+....-.|.+|..+|.+.+|...|+.++...|+-. ....+.....++
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~q 206 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQ 206 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHh
Confidence 75 366778889999999999999999999999998853 333444433333
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0013 Score=63.57 Aligned_cols=118 Identities=16% Similarity=0.056 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 494 (557)
.+..+...+.-+...|.+..- +.-||.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444555556666655544 66799999999999999999999999999999999999999988
Q ss_pred cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 495 MAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 495 lg~---~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
... -.+|.+.|++|+++||+|..+...|........++.+.- ..|+.|+..+.
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp 258 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLP 258 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCC
Confidence 764 469999999999999999888888887666655555544 36667766554
No 192
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.64 E-value=0.00051 Score=73.01 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=73.9
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
..+|...+..++|.+|.++++..++++|-....||++|.|..+++++..|.++|..+..++|+|.+.++.+....-++.+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 33444455679999999999999999999999999999999999999999999999999999999999999888777765
Q ss_pred HHHH
Q 008689 532 YNKK 535 (557)
Q Consensus 532 ~~~~ 535 (557)
..+.
T Consensus 569 k~ra 572 (777)
T KOG1128|consen 569 KKRA 572 (777)
T ss_pred hHHH
Confidence 5543
No 193
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.59 E-value=0.00037 Score=76.18 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=102.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHH------------HHHHHHhhHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKA------------LKVACNLNNAAC 457 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~------------~~~~~~~nla~~ 457 (557)
|..+--.|..|-.--+..+|..+|.+|-++++.+... ..++++.... .+.-.+..++..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 4445556666665557788888888888887655322 1111221111 122223447889
Q ss_pred HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
|++.+++..|+.+++.+|+.+|.+..+|.-+|.||..-|+|.-|++.|.+|..++|.+.-.+-....+.+.+.+.++.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976666666666666655543
No 194
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.59 E-value=0.00051 Score=76.77 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh------------------
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL------------------ 461 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~------------------ 461 (557)
.+++..|.+|-+.|++++|...|.+++++.+.++.. ++|+|..|...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~a---------------LNn~AY~~ae~dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEI---------------VKKLATSYEEEDKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHH---------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999998765543 44444444444
Q ss_pred -hCHHHHHHHHHHHHccCCCChHHHHH--------HH------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 462 -KDYKQAEKLCTKVLDLDSRNVKALYR--------RA------------QAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 462 -~~~~~A~~~~~~al~~~p~~~ka~~~--------~g------------~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
++|..+.....+.+..+|.+...+++ ++ .+|....+|++++..|+.+|+++|.|.-++.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 44444444455555556666554332 24 8888999999999999999999999998888
Q ss_pred HHHHHHH
Q 008689 521 EYKTLKE 527 (557)
Q Consensus 521 ~l~~l~~ 527 (557)
.+..|.+
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 8888866
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.59 E-value=0.00012 Score=50.00 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=39.1
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
++..+|.+|..+|++++|+..++++++.+|+|..+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 467899999999999999999999999999999999998863
No 196
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.58 E-value=0.00011 Score=46.94 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578888999999999999999999999888854
No 197
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.57 E-value=0.00024 Score=70.30 Aligned_cols=108 Identities=20% Similarity=0.135 Sum_probs=70.9
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH--Hhhh--CHHHHHHHHHHHHccCCCChH
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK--LKLK--DYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~--~k~~--~~~~A~~~~~~al~~~p~~~k 483 (557)
.+++.++++.|.+.++++-+..++ ....++|.++ +..| ++++|...|++.....+.+++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~ 202 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK 202 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence 555666677776666655433211 1133444433 3344 688888888887777778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
.+..+|.|++.+|+|++|.+.++.|+..+|++.+....+..+...+.+.
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999999888888887777776665555444
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0001 Score=68.14 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
-+.+|+.-+.|..|+..|.+||.++|..+..|-++|.||+++.+|+.+..+.++|+.++|+.......++.+.....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 45677788899999999999999999999999999999999999999999999999999998655555555544443
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.56 E-value=0.00066 Score=56.89 Aligned_cols=61 Identities=31% Similarity=0.247 Sum_probs=56.4
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
-|.....-++.+.|++.+.++|.+.|.++.||.+||+++.-.|+-++|++++++|+++.-.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 3566677899999999999999999999999999999999999999999999999999644
No 200
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.54 E-value=0.00069 Score=74.19 Aligned_cols=72 Identities=28% Similarity=0.238 Sum_probs=67.2
Q ss_pred HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
--+..++|++|++.|+++|+.||+|..|++-+|.|+..+++ .++|.+.|..|.+++|+|.-+++-|..+..+
T Consensus 11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999999999 9999999999999999999999988888777
No 201
>PRK10941 hypothetical protein; Provisional
Probab=97.54 E-value=0.00095 Score=64.91 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=71.6
Q ss_pred HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
.+......|+=.+|++.++|+.|+.+++.++.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 35566678999999999999999999999999999999988889999999999999999999999999999865444333
Q ss_pred H
Q 008689 525 L 525 (557)
Q Consensus 525 l 525 (557)
+
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 3
No 202
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.001 Score=66.80 Aligned_cols=136 Identities=15% Similarity=-0.006 Sum_probs=102.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------ChHHHHHHHH------------HHHHHHhhHHHH
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------GDEEKKQAKA------------LKVACNLNNAAC 457 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~nla~~ 457 (557)
+.++.+.+.++.|-...+..+|++.|.+|..+.|+++.. .+-+..+.+. -.+.....||..
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 445666777777777777788888888877777665422 0101111110 112334578999
Q ss_pred HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
|+...-|++|+.++++|--+.|+..|-....|.|+.+.|+|.+|.+.|+..-.-.|.|.++.+.|-++...+.-.
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999999999999999999999999999999999999999999999999999999998888875555433
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0011 Score=63.23 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT 524 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~ 524 (557)
.+|.|.-+++.|+|..|...+..-+..-|++ ..|+|++|.+++.+|+|+.|...|..+.+-.|+++ +..-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6689999999999999999999999988886 77999999999999999999999999999988875 55666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008689 525 LKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 525 l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
+..++.+.++.- ..|+.+.++.
T Consensus 224 ~~~~l~~~d~A~-atl~qv~k~Y 245 (262)
T COG1729 224 SLGRLGNTDEAC-ATLQQVIKRY 245 (262)
T ss_pred HHHHhcCHHHHH-HHHHHHHHHC
Confidence 666666555544 3555555443
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.50 E-value=0.00018 Score=45.91 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
..++++|.+|+++++|++|+++++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357899999999999999999999999999986
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.0057 Score=57.41 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----------hCHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE 468 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~ 468 (557)
......|..+|+.++|..|+..|++-++..|.+... ..+++.+|.|++++ +...+|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 456788999999999999999999999998876642 12345555555443 4567899
Q ss_pred HHHHHHHccCCCChHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 469 KLCTKVLDLDSRNVKA-----------------LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka-----------------~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
..++..+..-|++..+ -+..|.-|.+.|.|..|+.-++.+++-.|+.......+..+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999999999987322 23458999999999999999999999999998655555444
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=97.43 E-value=0.00078 Score=59.51 Aligned_cols=83 Identities=11% Similarity=-0.112 Sum_probs=71.0
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
.+..|.-++..|+|++|...+.-...++|.|.+.++-+|.|+..+++|++|+..|-.|..++++|+..--....|.-.+.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34678888999999999999999999999999999999999999999999999999999999988755555555555444
Q ss_pred HHH
Q 008689 531 EYN 533 (557)
Q Consensus 531 ~~~ 533 (557)
+..
T Consensus 120 ~~~ 122 (165)
T PRK15331 120 KAA 122 (165)
T ss_pred CHH
Confidence 433
No 207
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.41 E-value=0.0018 Score=68.11 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=77.2
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
..++|+-+++++-.+++.+.|...|...++..|+.+-.|..++..-.+.|+.-.|+..|.++..-+|.|...+-+.-++.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 44568888888888888888888888888888888888888888888888888888888888888888876666555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 008689 527 EKMKEYNKKEAKFYGNMFAKMNT 549 (557)
Q Consensus 527 ~~~~~~~~~~~~~~~~mf~~~~~ 549 (557)
.+....++.+. +..+.++.+.+
T Consensus 764 lR~gn~~~a~~-lmakALQecp~ 785 (913)
T KOG0495|consen 764 LRAGNKEQAEL-LMAKALQECPS 785 (913)
T ss_pred HHcCCHHHHHH-HHHHHHHhCCc
Confidence 55544444443 45556665544
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.39 E-value=0.0023 Score=55.28 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=62.5
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
+++.|...++.++|.+|++.++.+...-|.. ..|.+.++.+|.+.++|++|+..+++.++|+|+++.+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 6688999999999999999999999887754 7899999999999999999999999999999999744
No 209
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.39 E-value=0.00047 Score=71.25 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=92.7
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (557)
|..+-..|+-..|+.+...|+..-|.....+ .-|||.+.++-+-...|-....++|.++..-+-.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~ 679 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTF 679 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHH
Confidence 3333447888999999999997766433322 56999999999999999999999999997778889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
|..|.+|+.|.+.+.|++.|+.|++++|++..+..-|..+..
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999888887765
No 210
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.002 Score=67.47 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.-.-+.+.+..+|+.++|.-|++.|...++..+.+... ....+..-|++.||+++.+.+.|.+++.+|-+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999988765432 223667789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+|.++-.-+...++...-+.-++|+.++.+....
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999999999999999998877654
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.001 Score=64.16 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=62.5
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~ 519 (557)
++..|.-+++.++|++|+..+++++...|.... +.+++|.+|.++++|++|+..|+++++++|+++.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 567888899999999999999999999998844 559999999999999999999999999999987543
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.0028 Score=65.09 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=93.6
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
.++|+.|+..|++.....+. +..-+|.+++..++-.+|++..+++|...|.+...+.-.|..
T Consensus 182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56788898888886654331 133578899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
++..++++.|++..++|.++.|++-..+..|.++...+.+.+.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999988777654
No 213
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=0.002 Score=54.42 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=69.7
Q ss_pred HHHHHhhHHHHHHhhhC---HHHHHHHHHHHHc-cCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 447 KVACNLNNAACKLKLKD---YKQAEKLCTKVLD-LDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~---~~~A~~~~~~al~-~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
...+.+|+|.|..+..+ -++.+..+...++ -+|. .-..+|.+|..|+++++|++|+.+++..++.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34457799999888664 6677888888886 4444 36789999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 008689 522 YKTLKEKMKE 531 (557)
Q Consensus 522 l~~l~~~~~~ 531 (557)
-+.++.++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 214
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0063 Score=57.15 Aligned_cols=70 Identities=20% Similarity=0.111 Sum_probs=46.3
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+|+-.+||+..+.-|+.-+++..||..++..|..+++|++|.=+|+..+-+.|-|......+..+.--+.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 4444455555555555555566677777777777777777777777777777777776666666644443
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=97.30 E-value=0.00089 Score=68.60 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q 008689 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493 (557)
Q Consensus 414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~ 493 (557)
+-.+|.++-.+|+++.+.++. ++..+|.+....++++.|+..+++|+.++|+.+-++|.+|..+.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~---------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGK---------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 345566666666666655543 36778888888999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH
Q 008689 494 QMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 494 ~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
..|+.++|++.+++|++++|.-.
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999864
No 216
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0014 Score=63.99 Aligned_cols=104 Identities=20% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
.+..+.+|..|+...+-++... .||. ..+...+|.|++.+|+|++|+..|..+..-+..+.+...+
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 4666788888887776655321 1222 2235678999999999999999999999988888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+|.|+.-||.|.+|...-.+| |+++-....+-.+..++
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 999999999999998776554 55554444444443333
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0075 Score=56.87 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=66.1
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
...++-|.|.+|+-.++|..|...+.+++..||.++-|..++|.|++.+|+..+|++.++.++...|...
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4566789999999999999999999999999999999999999999999999999999999999999864
No 218
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.22 E-value=0.00073 Score=66.92 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (557)
Q Consensus 413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 492 (557)
.+|+.|...|.+..+..+.+ ..+++-+|.|++.+++|++|...+.+++..+|+++.++.++..+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 36999999999865433221 233667999999999999999999999999999999999999999
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 008689 493 IQMADL-DLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 493 ~~lg~~-~~A~~~~~~al~l~p~n~~~~ 519 (557)
..+|+- +.+.+.+.+....+|+++-+.
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 999998 677888888888999986443
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0024 Score=63.66 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~- 478 (557)
.++-+.||.+.=.|+|+.|+++|++++.+-.....- ..-+...+.||..|.-+++|++||.+..+-|.+-
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999998775422211 1122224579999999999999999999976642
Q ss_pred -----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 479 -----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 479 -----p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-.-..|++.+|.+|..+|+.++|+...++.+++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 234789999999999999999999999888865
No 220
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.02 Score=56.20 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=64.0
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
+.||.+++..-.|++||..|.++|.-+|+..-.-..+|.||.++.-|+-+.+.++-.|+..|+.+-+.....
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 457778888889999999999999999998888889999999999999999999999999999986555544
No 221
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.15 E-value=0.0039 Score=65.67 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=58.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+.-.|-.+-..++|.+|+++|+.|+.+.+++.. ++..+|..+.++++|+.....-.+.|+++|.+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q---------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ---------------ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 444555555566666666666666665443322 25566666666666666666666666666666
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
-..|+-.|.++.-+|+|..|...++...+..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666666665555443
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.12 E-value=0.0015 Score=46.38 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=33.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
|++.+|..++++++|..|+.+|+.+|+++|+|..|.--+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 5778999999999999999999999999999987754443
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.0023 Score=62.75 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=100.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------CCCh-----HH-------------HHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SFGD-----EE-------------KKQAKALKVA 449 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~----------~~~~-----~~-------------~~~~~~~~~~ 449 (557)
.+....+.|..+|+..++.+|+..+.+.+..+.+.. .... ++ ..+-...+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999987654321 0000 00 0111124566
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------H
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------V 518 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~------~ 518 (557)
.|.|++..+-++.+|.+++.+|...+.+-... ..++.-+|.||+.++.|++|++.|++|+++.-++.+ +
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 78999999999999999999999998864332 467888999999999999999999999998655543 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 008689 519 KLEYKTLKEKMKEYNK 534 (557)
Q Consensus 519 ~~~l~~l~~~~~~~~~ 534 (557)
.-.|..+..+++..++
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 3344555555555443
No 224
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.05 E-value=0.00031 Score=68.41 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|.-.+..|.++.|+++|..++.++|.+.-.|-.|+.++++|++...|+.+|..|++++|+...-...-...++.+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 344556788999999999999999999999999999999999999999999999999999764443333333333
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0097 Score=58.00 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=63.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
|-.-|.-|+|.++|..|+..|.+.|...-. |+-.|.|||.|.+.+|+|..|+.++.+|++++|.+.-+...=++|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 345688899999999999999999986432 4667889999999999999999999999999999954333333333
Q ss_pred HHH
Q 008689 527 EKM 529 (557)
Q Consensus 527 ~~~ 529 (557)
-.+
T Consensus 164 ~eL 166 (390)
T KOG0551|consen 164 LEL 166 (390)
T ss_pred HHH
Confidence 333
No 226
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0017 Score=62.02 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=77.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.|....+.|..+|+.|+|+.|+..|+.|+......+.. -+|+|.|+++.++|..|+++.++.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 36667889999999999999999999999886554433 569999999999999999999998763
Q ss_pred ----CCC----------------C---------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689 478 ----DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK 506 (557)
Q Consensus 478 ----~p~----------------~---------~ka~~~~g~a~~~lg~~~~A~~~~~ 506 (557)
+|. | ..|+.-++.++.+.++++.|.+.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 232 1 4577778899999999999988763
No 227
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.93 E-value=0.014 Score=61.62 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=100.7
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHHHHHH---------HHhhHHHHHHhhhCHH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLKDYK 465 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~~~~~---------~~~nla~~~~k~~~~~ 465 (557)
-.+..++..|+...|.....+|.+..+++..+ ...+.+.++.+..+ +|+.-+....-+++.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 34566778899999999999999887765322 22344444444433 3333444445588999
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+|++.|+++|+.-|+..|.|..+|+++..+++.+.|++.|...++.-|...-.+-.|.++..+..
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888888888876664
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.92 E-value=0.0015 Score=41.16 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
|+|++|.+|..+|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67888888888888888888888888877764
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.90 E-value=0.0081 Score=53.75 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~----------~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
-|+.|++.+..+...+|.++.+++|-|-|++.|.++ ++|+.-|+.||.++|+..++.-.+..+...+..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 389999999999999999999999999999999655 688999999999999998888877776555543
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.89 E-value=0.003 Score=57.82 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=66.7
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
.++.+++.++..|-.+|-|..|..++.++|.+.|.-+.++.-+|.-+..-|+|+.|.+.|+..+++||.+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 35666888999999999999999999999999999999999999999999999999999999999999974
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.89 E-value=0.0013 Score=41.95 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
.+|.++|.+|.+++++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 358899999999999999999999999999854
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.85 E-value=0.0012 Score=67.40 Aligned_cols=64 Identities=31% Similarity=0.335 Sum_probs=60.4
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
-|-|.-+++-+.|+.|+..|.+||+++|+++-.+-+|+.||.+.++|..|+.++.+|++++|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 3667788899999999999999999999999999999999999999999999999999999986
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.012 Score=62.45 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=83.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+--+..+|..+..+|+.+.|+..|++|+..- .+.+++...|+..+|.||+-+.+|++|..++.+.++.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~- 334 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE- 334 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence 3446678888999999999999999988421 2234566778999999999999999999999999885
Q ss_pred CCChHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 008689 479 SRNVKALY--RRAQAYIQMADL-------DLAEFDIKKALEIDP 513 (557)
Q Consensus 479 p~~~ka~~--~~g~a~~~lg~~-------~~A~~~~~~al~l~p 513 (557)
.++.+|+| -.|.|+..+++. ++|.+.|.++-.+-.
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 45667665 578999999999 888888888876643
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.76 E-value=0.0085 Score=58.95 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=81.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (557)
+-..|+.+...+.|++|++.|++|+++-...... .+-..++..|+..|-.++++++|+.+..+|+++-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 3447888999999999999999999986543322 123345778999999999999999999999876322
Q ss_pred -----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 481 -----N----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 481 -----~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+ .-++|+++.++..+|++-.|.++++.|.++
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1 347889999999999999999999999876
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.74 E-value=0.0012 Score=42.84 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
||.++|.+|..+|+|++|++.|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666664443
No 236
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.68 E-value=0.04 Score=55.11 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=88.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (557)
.-.|...+...-..|-.-+-.|+|.+|.+...++.+.-+. ...+|.--|.+-..+|+++.|=.+.
T Consensus 77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL 141 (400)
T COG3071 77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYL 141 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3356677888888999999999999999999886654321 1223444556666777777777777
Q ss_pred HHHHcc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 472 TKVLDL-DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 472 ~~al~~-~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
.++-+. ..++.-++.-+++.+...+++..|+..+.++++..|.++.+.....++..++.+..
T Consensus 142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHH
Confidence 777776 23345566777777777777777777777777777777777666666655554443
No 237
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.67 E-value=0.003 Score=38.76 Aligned_cols=32 Identities=44% Similarity=0.657 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
.+++++|.++..++++++|+..|.++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666666666666666776666666666654
No 238
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.035 Score=50.33 Aligned_cols=101 Identities=21% Similarity=0.159 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
....+.+..++..++++.|....+.++..-.+ ..+...+-.+||.+++.++++++|+...+..-.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--- 154 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE--- 154 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---
Confidence 34557788889999999999999998854221 134445567899999999999999998876543
Q ss_pred CChHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 480 RNVKA--LYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 480 ~~~ka--~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.+..+ .-.||.+++.+|+-++|+..|++|+..++++
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 22333 5679999999999999999999999998665
No 239
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.66 E-value=0.045 Score=51.56 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=76.8
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-------HHHHHHHHHHHHccC
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLD 478 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------~~~A~~~~~~al~~~ 478 (557)
+..+-....++.|+..|.-|+-........ ...++.+++.+|.+|..+++ +..|+..+.++++..
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 335556778999999999998764422211 12466778899999999998 555677777776544
Q ss_pred CC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 479 SR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 479 p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.. ....+|-+|..+.++|++++|+.+|.+++..--.+
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 22 36899999999999999999999999999765444
No 240
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.62 E-value=0.019 Score=61.34 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=68.4
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
++-.+.++...|++++|+.+..+....-.+....+-.+|.+|+++|++++|...|...+..+|+|..-...|..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3446677889999999999999988888889999999999999999999999999999999999988888877775
No 241
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.036 Score=52.61 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=89.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHh-------hhcC----CCChHHHHHHHHH-HHHHHhhHHHHHHhh----hCHH
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYI-------EYDT----SFGDEEKKQAKAL-KVACNLNNAACKLKL----KDYK 465 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~-------~~~~----~~~~~~~~~~~~~-~~~~~~nla~~~~k~----~~~~ 465 (557)
+-.-|..+.+.++|++|++...+...+- .... .....+.+..+.+ --..++.||.++.++ .++.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 3346778888999999998877622210 0000 0001111222221 112234477777664 3689
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
.|...|++.-..-|..+..+.-.|.|++.+++|++|...++.||.-++++++....+-.+...+.+.
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999988867778899999999999999999999999999999999988888777665555443
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.57 E-value=0.014 Score=55.39 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=64.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
++|-|...+..|+|++|++.++.+....|.+ .++..-++.|+++.++|++|+..+++.+.+.|+++++..
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 6789999999999999999999999988765 789999999999999999999999999999999875543
No 243
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.034 Score=58.23 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHH--------HHHHH-HhhHHHHHHhh
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKA--------LKVAC-NLNNAACKLKL 461 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~--------~~~~~-~~nla~~~~k~ 461 (557)
..+...-|.+.+.++|++|+....+.+...|++... ..+..++.-. ..... .+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 445556677777888999988888888876544321 1111111111 11111 24778999999
Q ss_pred hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
+..++|+..++ .+++...+.+.-+|+.++++++|++|.+.|+...+.+.++.+.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99999999999 5667778899999999999999999999999998887776543
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.038 Score=51.43 Aligned_cols=111 Identities=20% Similarity=0.113 Sum_probs=80.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-hCHHHHHHHHHHHH
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL 475 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al 475 (557)
+.+..+.+.+| +|++.+.++|+++..+|+++......+ .+..+-+..+|..|-.- .++++||.+|+++-
T Consensus 72 Daat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 72 DAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred hHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444554444 456678888888888888887654433 12333355667666554 88999999999986
Q ss_pred ccC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 476 DLD------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 476 ~~~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
+.- ..--|++...|.--..+++|.+|++.|++.....-+|..
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 642 223688899999999999999999999999988777764
No 245
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.39 E-value=0.042 Score=59.00 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCh-------HHHHHHHHHHHHHHhhHHHHHHhhh--------CHHHHHHHHHHHHcc--C
Q 008689 416 ARASKRYEKAVKYIEYDTSFGD-------EEKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL--D 478 (557)
Q Consensus 416 ~~A~~~y~~Al~~~~~~~~~~~-------~~~~~~~~~~~~~~~nla~~~~k~~--------~~~~A~~~~~~al~~--~ 478 (557)
..|..+|-+|..++........ ++..++..-...+|.-+|.||.... ++..+.....+++.+ +
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 3677777777776543221101 1111222233445555666665542 345666667776664 7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|..+.+|.-+|..+...|++++|...|++|+.++| +......+.++.....+.++... .|++.+.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~ 481 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD-AYSTAFN 481 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 78889999999999999999999999999999999 56788888888777777666653 5555443
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.34 E-value=0.0015 Score=41.75 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (557)
Q Consensus 421 ~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (557)
+|++||++.|.+... |+|+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhc
Confidence 488999998877654 999999999999999986
No 247
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.04 Score=57.74 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (557)
++++-++|+.+..++|+..++ .++- .. ..+..-.|.+++++++|++|+..|...++.+-+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~---~~--------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDR---LD--------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccc---cc--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 578888888888888888887 2211 11 11244579999999999999999999998877666
Q ss_pred HHHHHH
Q 008689 483 KALYRR 488 (557)
Q Consensus 483 ka~~~~ 488 (557)
....|.
T Consensus 145 d~~~r~ 150 (652)
T KOG2376|consen 145 DEERRA 150 (652)
T ss_pred HHHHHH
Confidence 554443
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.28 E-value=0.14 Score=47.11 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHhhhCHHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
+...+++..|+..+.+++...+. ...++..++.++...++++.|+..+.+++...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 44444555555555555555444 3445555555555555555555555555555444
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.24 E-value=0.029 Score=54.14 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=66.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
-+|.|.-..+.|+.++|...+..||.++|.|+.++.+.|+-...-.+.-+|-.+|-+||.++|.|.++...-.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44677777889999999999999999999999999999999999999999999999999999999766554433
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.23 E-value=0.0055 Score=39.69 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
++.|||.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999996654
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.11 E-value=0.007 Score=37.99 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+++++|.||.++|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46799999999999999999999999998874
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.24 Score=48.05 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH------
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK------ 473 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~------ 473 (557)
.....++..+...+++..|...|..++...+..... ..-+|.||+..|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 335677889999999999999999999988765432 44567777777776554433332
Q ss_pred ----------------------------HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 008689 474 ----------------------------VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYK 523 (557)
Q Consensus 474 ----------------------------al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~ 523 (557)
.+..||++..+-+.+|..|...|++++|.+.|-..++-+-+ +..+++.+-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 23357889999999999999999999999998888876543 335566555
Q ss_pred HHHHHHH
Q 008689 524 TLKEKMK 530 (557)
Q Consensus 524 ~l~~~~~ 530 (557)
.+-..+.
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5544443
No 253
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.017 Score=59.04 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc---
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--- 476 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--- 476 (557)
..+.-+.+..|-.|+|..|.+.....--........+ -+...-..++|++.+++.++.|..+..++.+||+
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 3445556667777777777665432111111110111 1112233368999999999999999999999995
Q ss_pred ------cC---------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 477 ------LD---------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 477 ------~~---------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+. ......+|+.|..|++.|+.-.|.++|.+|....-.|+.++-.+..|
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11 23477899999999999999999999999999988898888777765
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.10 E-value=0.39 Score=47.40 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=90.8
Q ss_pred CCChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (557)
Q Consensus 389 ~~~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (557)
.+++......+..+.+.|..+++++ +|..|+.-.++|.++++.... ..........++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777888999999999999999 999999999999999754211 01122345567888899999999998887644
Q ss_pred HH---HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 468 EK---LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 468 ~~---~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
.+ ..+.+-.--|+.+-.++-.=.++.+.++.+++.+.+.+++.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33 33333334466666665656666667889999999988886543
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.08 E-value=0.064 Score=49.48 Aligned_cols=66 Identities=36% Similarity=0.481 Sum_probs=61.0
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
..+.+++.++...+++..|+..+..++...|.....++.++..+...+.+++|...+.+++..+|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 347789999999999999999999999999998888999999999888899999999999999997
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.03 E-value=0.012 Score=35.81 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
++.++|.|+..+++++.|+.++.++++++|.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 47899999999999999999999999988753
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.092 Score=49.26 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=85.5
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH----HccC-
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD- 478 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~~~- 478 (557)
+++-...+..+.+.|+..|++++.++..+... .+...++...+..+.+++.|.+|-..+.+- +..+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 34444455566777777777777776644322 234445677888899999999987777663 3333
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 479 -SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 479 -p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
++-.|++.-.-.+|+...+|..|..+++..-++.--+ -...-+.|.+.+..+++.+-..+++|.+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 4446677766777788889999999999987764333 1223344556666666666556666553
No 258
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.066 Score=51.38 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
.....+..|+=..++..++|+.|..+..+.+.++|.++..+--+|.+|.+++-+.-|++++...+..-|++..+..
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3455567788899999999999999999999999999999999999999999999999999999999999875433
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.79 E-value=0.13 Score=47.01 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.-..+.+.|+.|++.|+++.|++.|.++.+++... ..++.+++++-.+.+..++|..+..+..+|-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35668899999999999999999999988875422 235666788899999999999999999998654
Q ss_pred CC--CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 478 DS--RNV----KALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 478 ~p--~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-. .++ +.-.-.|.+++..++|.+|-+.|-.+..-
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 32 222 22233477788889999998888776543
No 260
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.2 Score=51.38 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=57.1
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHH--------------------------------
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-------------------------------- 457 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-------------------------------- 457 (557)
+...+.+.+...|+.+|+++|...-. .+++++-.|..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFt-----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFT-----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccch-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 35788999999999999988754321 12222222222
Q ss_pred -HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 458 -KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 458 -~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-+++++|+.|...|.+-|+..|.|..+|...|..-..||+.+.|+..|.-|++.
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 345566666666666666666666666666666666666666666666666544
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.74 Score=43.41 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--- 477 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--- 477 (557)
.+...++.+-..++|++|..+..+|++..+++...+ ...+.|-..+...-++..|.++...+++|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444555557889999999999998877666542 23445666677777788999999999999765
Q ss_pred --CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH---HHHHHHHHHHH
Q 008689 478 --DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT---LKEKMKEYNKK 535 (557)
Q Consensus 478 --~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~---l~~~~~~~~~~ 535 (557)
.|+-...-.-+|--.+..-+.++|++.|++++.+--++ ..+...+++ +.-++++..+.
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 24444444445555566778899999999998774333 333333333 34444444443
No 262
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.63 E-value=0.071 Score=60.08 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=55.9
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..|..+..++.+.++++.|...+++++.++|++...|..++.+|...|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 347777788889999999999999999999999999999999999999999999999887754
No 263
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.63 E-value=0.18 Score=52.00 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (557)
Q Consensus 417 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg 496 (557)
+-...|+.|....+.+. +++++.....-|.+.|.+.-..|.++|..+|+++..|.--|.=.+..+
T Consensus 89 rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 33456777766555433 235566555566667999999999999999999999988888777766
Q ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 497 D-LDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 497 ~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
. .+.|++.|.++|..+|+++.++.++-++.-
T Consensus 154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred cchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 5 999999999999999999998888766543
No 264
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.59 E-value=0.11 Score=43.18 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH----Hc
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD 476 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~ 476 (557)
++...|+..++.+++-.|+-+|.+|+.+........+.+.++.-.+.+....|||..+..+|+-+-.++|.+-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999998776545555666666777777789999999999999999988754 55
Q ss_pred cCCCC
Q 008689 477 LDSRN 481 (557)
Q Consensus 477 ~~p~~ 481 (557)
+-|+.
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 66654
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.49 E-value=0.15 Score=59.35 Aligned_cols=101 Identities=21% Similarity=0.118 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC---
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--- 479 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--- 479 (557)
...|..++..|++.+|...|.+|+......... .....++.++|.+++.+|++..|...+.+++.+-.
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666666666666543321111 11233466788888888888888888888776421
Q ss_pred -----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 480 -----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
...-.+..+|.++...|++++|...+.+++.+.
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 112335567788888888888888888887753
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.44 E-value=0.09 Score=55.04 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=92.7
Q ss_pred hHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 402 KKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 402 ~k~~G~~~~~-~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
+...+-.|++ +|+..+|+.||..|+.+.+..... ..++.+|.+..+.|.-.+|--..-.|+.--|.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd-------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD-------------IALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc-------------chhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 4445555555 889999999999999887754322 23668999999999888887777777776666
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV---KLEYKTLKEKMKEYNKKEAKFYGNM 543 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~---~~~l~~l~~~~~~~~~~~~~~~~~m 543 (557)
-..-+|-++.++..+++|.....+|..|++.+|..... ++..-.|..++.+.-+++.+..+.|
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56669999999999999999999999999999976422 2222334444444444444333333
No 267
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.44 E-value=0.17 Score=41.68 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=72.7
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHH----HHHhhhCHHHHHHHHHHHHccCCC
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA----CKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~----~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
++..+|++|++-+|++..+..+..-..+...+ -...+.-..+..+|. --.|..-.-.|++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 46789999999999999999887655443221 111122222222222 122333356788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
.+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999998888888999999999988763
No 268
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.41 E-value=0.16 Score=40.54 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHH
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l~~l~~~~~~~ 532 (557)
.+..+.+.+..+|++..+.|.+|.+++..|++++|++.|-.+++-+++. ..+++.+-.+-..+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3567788899999999999999999999999999999999999998765 46666666665555443
No 269
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29 E-value=0.42 Score=49.13 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
......|.---.+++++.|...|.+||+....+ +.+++..|.|-+|.++...|....++|+.+-|
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 344455666667889999999999999876433 34478889999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
.-.+.||..-..-..||+..-|++.|++=++..|+..
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 9999999999888999999999999999999999864
No 270
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.29 E-value=0.027 Score=52.18 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=56.1
Q ss_pred HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
...+.++.+.|.+.++++|.+-|.+.-.|||.|....+-|+++.|.+.|.+.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678899999999999999999999999999999999999999999999999999875
No 271
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.26 E-value=0.23 Score=56.06 Aligned_cols=144 Identities=9% Similarity=-0.007 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh--hhcCC-----------CChHHHHH-HHHHH--------HHHHhhHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDTS-----------FGDEEKKQ-AKALK--------VACNLNNAAC 457 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~--~~~~~-----------~~~~~~~~-~~~~~--------~~~~~nla~~ 457 (557)
..+......|.+.|++++|+..|++..+.- |+... -.-++..+ .+.+. ...|..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 345566677777888888888888766431 11000 00011111 11111 1247778889
Q ss_pred HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..+++.+.++|++......+..+..+..+.++..+
T Consensus 472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999988765 2334 456788888999999999999999999999999987777777777777666665553
Q ss_pred HHHHHHhhh
Q 008689 538 KFYGNMFAK 546 (557)
Q Consensus 538 ~~~~~mf~~ 546 (557)
.++.|-.+
T Consensus 550 -v~~~m~~~ 557 (697)
T PLN03081 550 -VVETLKRK 557 (697)
T ss_pred -HHHHHHHc
Confidence 55555544
No 272
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.13 E-value=0.37 Score=56.36 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=38.0
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.|+.+-.+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|++.|++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45555556666666666666666666554 334555666666666666666666666666554
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.12 E-value=0.1 Score=50.72 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
++....+++.++++..++..+...++++.++.+.++.+..+|.+-++|.++=.+|+..|+...|+..|++..++
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999999999999999998874
No 274
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.24 Score=47.79 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhhHHHHHHhh
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAACKLKL 461 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~~~k~ 461 (557)
.+.-.|-.||...+|..|..+|.+.....|....+ ..+-... ...++..|.---|++.+..
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 35567889999999999999999877665532111 0000000 0001111111111122222
Q ss_pred hCHHHHHHHHHHHHccCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
+++-.|. -.++.-| +......+.|....+-|+|++|.+-|+.|++...-++-+...+..+.-+.+++..
T Consensus 126 ~Dl~g~r----sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 126 GDLPGSR----SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS 196 (459)
T ss_pred ccCcchH----HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence 2222211 1222223 3455666777777777888888888888887777666666666655544444433
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.06 E-value=0.26 Score=51.10 Aligned_cols=129 Identities=20% Similarity=0.169 Sum_probs=84.7
Q ss_pred CChHHHHHHHhhhHHH------HHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCCh------H--HHHHH--HHHHHHH
Q 008689 390 MNTEEKIEAAGKKKEQ------GNTLFK---AGKYARASKRYEKAVKYIEYDTSFGD------E--EKKQA--KALKVAC 450 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~------G~~~~~---~~~y~~A~~~y~~Al~~~~~~~~~~~------~--~~~~~--~~~~~~~ 450 (557)
-+.+.+++.|.+-.+. +-.++. .....+|.+.|++|++.-+....... . +.... .....-+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 4666666666443322 112222 23478888999998886543221100 0 00001 1122333
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNRDV 518 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~p~n~~~ 518 (557)
...+|.|..++|+.++|++.+...++..|. +...++++-.+++.++.|.++...+.+.-.+ -|+...+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 457999999999999999999999987765 5778999999999999999999999886544 3455433
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.01 E-value=0.23 Score=49.05 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=84.8
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHccCCCChH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~k 483 (557)
..+..-+.+..+.|...|.+|++... .. ..+|...|...+. .++.+.|...++.+++.-|.+..
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~--~~-------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKR--CT-------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC--S--------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCC--CC-------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 33444455558899999999974211 11 1236667777566 56777799999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
.+.....-+..+++.+.|+..|++++..-|... .++..+-....+...... -.+.++++...+
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~-v~~v~~R~~~~~ 137 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES-VRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHh
Confidence 999999999999999999999999998877765 344444444444332222 223454554443
No 277
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.99 E-value=0.44 Score=55.71 Aligned_cols=60 Identities=7% Similarity=-0.157 Sum_probs=32.0
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|+.+..+|.+.+++++|+..+.+.++.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555432 22344555555566666666666666655543
No 278
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.93 E-value=0.18 Score=58.66 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=79.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (557)
....|..++..|+|..|...+.+|+...+... ......++.++|.++...|++++|+..+.+++.....
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34467888899999999999999998643211 0113334678999999999999999999999875321
Q ss_pred -----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 481 -----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
...++.++|.++..+|++++|...+.+++.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1457788999999999999999999999986
No 279
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.92 E-value=0.18 Score=38.62 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
.+....++|..+|.+.+.++|+..+++|++...... .+-.++.-++.+|...|+|.+++.+.-+=+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999998765422 2344466788899999999999888776544
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.91 E-value=0.04 Score=36.54 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+++|+|.+|..+|+|++|+.++.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777654
No 281
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.90 E-value=0.29 Score=47.23 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 435 FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+.+++.+-+..+..+++.-.|..|++.+.+.+|+++|++++.+||-+...+.-+-..|..+|+--.|++.|++.-
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567778888888888889999999999999999999999999999999999999999999888887776643
No 282
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.85 E-value=0.35 Score=53.30 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=77.7
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (557)
Q Consensus 409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (557)
....++|.+|+....+.++..|+... ..+ --|..+.++|++++|....+..-..-+++...+--+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~-------------a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l 83 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALY-------------AKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL 83 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHH-------------HHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence 34567788888888887776664321 112 246677888888888855544444556667777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 489 g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
-.||..++++++|...|+++...+|+ ......+=.+..+....+++++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888 5555555556666655555443
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.81 E-value=0.5 Score=48.09 Aligned_cols=115 Identities=19% Similarity=0.095 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCCC------------------hHHHHHHHHHHHHHHhhHHHHHHhh
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL 461 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~k~ 461 (557)
...+.+..++.+|+...|+...+..+. .+....... .............+++-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 344566777777888888888877776 332221000 0012333455667777788777777
Q ss_pred ------hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCCC
Q 008689 462 ------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPDN 515 (557)
Q Consensus 462 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~-----------------~~A~~~~~~al~l~p~n 515 (557)
+.++.++..+.+++.++|++.++|++.|..+..+=+. ..|+..|-+|+.+.++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 8899999999999999999999999998888776332 24778888888887773
No 284
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.66 E-value=0.71 Score=47.72 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=78.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--hhC-----HHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKD-----YKQA 467 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--~~~-----~~~A 467 (557)
.+.......+.|-.+|..|+|.+|+..|+..|..++-....+.++..+++++...|..-+-.+.+. .+. .+..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 344444556679999999999999999999999988777677778888888776665544433333 222 2233
Q ss_pred HHHHHHHH-----ccCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 468 ~~~~~~al-----~~~p~~~ka~~~~g~-a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
.+.|+-+. .+.|.|.-.-.|.|+ ..+++++|.-|-...++.|++.|....
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 34444432 344444433344444 346789999999999999999998753
No 285
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.43 E-value=0.47 Score=42.84 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=66.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHc-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR--DVKLEYKTLKE 527 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~--~~~~~l~~l~~ 527 (557)
.+.||.....+|++.+|..+|.+++. +-..+...+.-++++...++++-.|...+++..+.+|... +-.-.+.+...
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 55789999999999999999999987 3456678899999999999999999999999999988643 33444555444
Q ss_pred HHHHHH
Q 008689 528 KMKEYN 533 (557)
Q Consensus 528 ~~~~~~ 533 (557)
.+.+..
T Consensus 172 a~g~~a 177 (251)
T COG4700 172 AQGKYA 177 (251)
T ss_pred hcCCch
Confidence 444333
No 286
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.41 E-value=0.087 Score=50.93 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
+...|......+....+.|+.++|...|..|+.+.|..... +..++...-.-++.-+|-.+|-+|
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhee
Confidence 34444444556667788999999999999999998876543 455666655567788899999999
Q ss_pred HccCCCChHHHHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYI 493 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~ 493 (557)
|.++|.|.+|+.+|++..-
T Consensus 177 LtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 177 LTISPGNSEALVNRARTTP 195 (472)
T ss_pred eeeCCCchHHHhhhhccch
Confidence 9999999999999987543
No 287
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.83 Score=43.68 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=72.2
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
...++.|...|..--+..+..+ .+.+-+|.|++.+++|++|......+|..+++.+..+-++-.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~---------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTP---------------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred chhhhhHHHHHHHHhcccCCCh---------------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3457888888877665333322 2366789999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHH-HHHHHhCCCCHHH
Q 008689 492 YIQMADLDLAEFDI-KKALEIDPDNRDV 518 (557)
Q Consensus 492 ~~~lg~~~~A~~~~-~~al~l~p~n~~~ 518 (557)
-..+|.-.++.+.+ .+....+|+.+-+
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999887766554 5555667887543
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.76 Score=45.26 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
+.....+..++.+|++.+|...+.+.++-.|.+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtD 136 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTD 136 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchh
Confidence 445556777889999999999999998876654
No 289
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.35 Score=51.36 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=64.2
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
...++-|-|.-+++.++|..+++.|...+..-|. ..|....++.||+.|.+.+.|.+.+..|-+.+|.+.-.+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4455568899999999999999999999886543 3788888999999999999999999999999999964444
Q ss_pred HH
Q 008689 521 EY 522 (557)
Q Consensus 521 ~l 522 (557)
..
T Consensus 433 ~~ 434 (872)
T KOG4814|consen 433 LM 434 (872)
T ss_pred HH
Confidence 33
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.31 E-value=0.76 Score=40.24 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=63.0
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCC--------C--------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDS--------R--------------NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p--------~--------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
|......++...++..+.+++.+-. . ...++.+++.++...|++++|+..+++++.++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4444556678888888888877531 1 24466678899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 513 PDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 513 p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|-|..+...+-++...+.+.....+ .|.++-.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~~~ 124 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALR-VYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHH
Confidence 9999888888888777766655442 4444433
No 291
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.14 E-value=0.58 Score=47.06 Aligned_cols=112 Identities=16% Similarity=0.080 Sum_probs=70.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
..-....+..+.+.|+++.|.+.-..+++..-+.. + -+=.-.++.+++..=++..++.+..+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------------L-~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------------L-CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----------------H-HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 33444566677888999999999988887532110 0 01122345666667777777777777
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|+++-.++-+|+.+++.+.|.+|...|+.|++..|+..+ ...+..+..++
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~ 374 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQL 374 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHc
Confidence 777777777777777777777777777777777666532 33444443333
No 292
>PLN03077 Protein ECB2; Provisional
Probab=94.06 E-value=0.59 Score=54.12 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHH--hhhcCCC-----------ChHHH-HHHHHH--------HHHHHhhHHHHH
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF-----------GDEEK-KQAKAL--------KVACNLNNAACK 458 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~--~~~~~~~-----------~~~~~-~~~~~~--------~~~~~~nla~~~ 458 (557)
.+......|.+.|+.++|+..|++..+. .|+..++ .-++. .-.+.+ ....|..+..++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556778888999999999999987753 2221111 00111 111111 223567777888
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~ 538 (557)
.+.|++++|.+.+++. .+.|+ ...|-.+-.++..-++.+.|....+++++++|++......+..+.....+.++..+
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~- 712 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR- 712 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH-
Confidence 8888888888888774 34443 45555555667777888888888888889999888777777777766666555443
Q ss_pred HHHHHh
Q 008689 539 FYGNMF 544 (557)
Q Consensus 539 ~~~~mf 544 (557)
..+.|-
T Consensus 713 vr~~M~ 718 (857)
T PLN03077 713 VRKTMR 718 (857)
T ss_pred HHHHHH
Confidence 333443
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.01 E-value=0.61 Score=48.46 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=70.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCC----ChHH---HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYDTSF----GDEE---KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~----~~~~---~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
...++..+.++-++.=++|+++.+..+.. .+|+ ..+...+..+. .+.|...++..+........-..+....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqA-vkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQA-VKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHH-HHHHHHhhchhhhhhcccchhhhhhccc
Confidence 34577889999999999999998865432 1111 11111111111 1122222222221111111111121112
Q ss_pred CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHH
Q 008689 480 RN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 480 ~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~~~~ 534 (557)
.+ +-+-+|+|+|..++|+.+||++.++..++..|. +..++..|-.+.-.+++..+
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence 22 455678999999999999999999999998886 34566666555444444433
No 294
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=1.5 Score=45.32 Aligned_cols=102 Identities=25% Similarity=0.266 Sum_probs=78.7
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
+...+.-+.-.|.....-+.|+.|..+|..|.+.... ..+.+-|..|+|..|++.++-+. +.++
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ 426 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKA 426 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHH
Confidence 3445666777888888889999999999999987542 34577788999999999776443 3333
Q ss_pred Hc-cCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 475 LD-LDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 475 l~-~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
++ +.|.| ..++|-.|.-.+..+++.||...+.+.++..
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 33 34443 4578889999999999999999999999886
No 295
>PLN03077 Protein ECB2; Provisional
Probab=93.89 E-value=0.53 Score=54.49 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=65.9
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------------------ 511 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------------------ 511 (557)
+|..|-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+.
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 35555555667889999999999999999999999999999999999999999999877642
Q ss_pred --------CCCCHHHHHHHHHHHHHHHH
Q 008689 512 --------DPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 512 --------~p~n~~~~~~l~~l~~~~~~ 531 (557)
.|...++...|..+..++++
T Consensus 739 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 739 AFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 24455677777777666653
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.68 E-value=0.15 Score=33.65 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999976
No 297
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.62 E-value=0.43 Score=38.47 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
...+.++|..|++.+.+..+.......... .........|+|.++...|++++|+..+++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456789999999999999887654332210 1112223556777777777777777777776654
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.52 E-value=3.6 Score=37.62 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=70.0
Q ss_pred HHHHHHcC---cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH------HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 406 GNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 406 G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|=.|++.. +...|...|.+++..............++... +-.-..+.+|..+...+++++|+..++.+|.
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~ 117 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 33444444 45588899999998875443322222222211 2222344677788899999999999999996
Q ss_pred cC-CCChH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 477 LD-SRNVK--ALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 477 ~~-p~~~k--a~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
.- ..+.+ +-.|+|.+...++++++|+..+....
T Consensus 118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 53 23444 45699999999999999999887643
No 299
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.52 E-value=0.69 Score=49.28 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC----ChHHHHHHH
Q 008689 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRA 489 (557)
Q Consensus 414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~g 489 (557)
+...|...........|+..-+ +...|..+...++.++|++.+++++..... ..-++|.+|
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lf---------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~ 312 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALF---------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA 312 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH
Confidence 4445555555555555543322 667899999999999999999999864332 245789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
.+|+.+.+|++|.++|.+..+.+.-.+.....+
T Consensus 313 w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 313 WCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999998776655544443
No 300
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.11 E-value=1.8 Score=50.34 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTL 525 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l 525 (557)
++|..|+-.|.+-+++++|.+.++..++.-.+..+.|.+.|..++...+-++|...+++||+.-|. +.++....+.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 446667788888888888888888888766677888888899888888888899999999988887 33444444433
No 301
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.09 E-value=0.35 Score=48.71 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--- 477 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--- 477 (557)
.+.+.|..|+..|+++.|+++|.+|-+++.+. ...+..+.|+-.+-+-+++|.+...+.++|...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 46678899999999999999999988887532 223445678888888899999999999999876
Q ss_pred -CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 478 -DS----RNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 478 -~p----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
.. -..+...--|.|++.+++|..|.+.|-.+.
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 135666778999999999999999987765
No 302
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.02 E-value=0.39 Score=40.90 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=35.3
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (557)
-.|.+-||..|+++++|++++.+++..|+.+|+|..|.--+
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34566799999999999999999999999999998775443
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.97 E-value=3 Score=41.14 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=75.4
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHcc----CC---C
Q 008689 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R 480 (557)
Q Consensus 409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~----~p---~ 480 (557)
..++|+++.|..+|.|+-.+...... .........++|.|...++.+ +|+.|+.+.++++++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 46789999999999999988742111 112334556789999999999 999999999999876 21 1
Q ss_pred -------ChHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 008689 481 -------NVKALYRRAQAYIQMADLD---LAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 481 -------~~ka~~~~g~a~~~lg~~~---~A~~~~~~al~l~p~n~~~~ 519 (557)
..+.+.-++.+|+..+.++ +|...++.+..-.|+...+.
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2557778899999988765 45555555655667765555
No 304
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.49 E-value=1 Score=34.56 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
..|..+-.++..+-+.|+|.+|+.+|.+|++++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999998754
No 305
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.42 E-value=0.49 Score=38.12 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHhhhCHHHHHHHHHHHHccCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~---------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
-.++.++|..|++...+.+..... ..-|+.++|..+..+|++++|+..++.|+.+--.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 346789999998888887664321 2468899999999999999999999999988543
No 306
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.25 E-value=0.27 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.+|.++|.+-+..++|++|+.+|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888999999999888876
No 307
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.94 E-value=1.1 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
..|..+..+|..+-+.|+|.+|+.+|.+||+++..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999998754
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.81 E-value=3.8 Score=42.25 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=59.6
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLKEK 528 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----~~~~~l~~l~~~ 528 (557)
.=|...+..|+|.+|..++.=+.+..| ++.+|.-+|.|++...+|++|..+|.+ +-|++. .+.+.+..|++.
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence 345667789999999999999999999 999999999999999999999999865 344332 355556666665
Q ss_pred HHH
Q 008689 529 MKE 531 (557)
Q Consensus 529 ~~~ 531 (557)
+.+
T Consensus 543 ~~k 545 (549)
T PF07079_consen 543 LPK 545 (549)
T ss_pred hhh
Confidence 543
No 309
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.67 E-value=2 Score=32.89 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.+.|..+-.++..+-+.|+|.+|+.+|++|++++-.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999998754
No 310
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.58 E-value=0.44 Score=46.38 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=64.1
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++...+....+.+-|.+.-..|.++|..+|.|+..|.. -+.-+...++++.|++.|.+++.++|+++.++.++-++
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 35556666677889999999999999999999987766 45557778999999999999999999999888876554
No 311
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.45 E-value=1.2 Score=49.44 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=74.6
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
..++|++|+..|.++++..|+..-|..-.|..+.++|++++|..+++..-.+-+++......+..|.+.+.+..+.-. .
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~-~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH-L 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-H
Confidence 467899999999999999999999999999999999999999988887777777887788888889888888777653 6
Q ss_pred HHHHhhhcc
Q 008689 540 YGNMFAKMN 548 (557)
Q Consensus 540 ~~~mf~~~~ 548 (557)
|.+..++-.
T Consensus 100 Ye~~~~~~P 108 (932)
T KOG2053|consen 100 YERANQKYP 108 (932)
T ss_pred HHHHHhhCC
Confidence 666665543
No 312
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.35 E-value=2.1 Score=42.26 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=69.7
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|..+.....+.+..+.|...+.+|+...+.+...|...|..-+. .++.+-|.+.|+.+++..|.+.+++..+-.....+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 45555666677779999999999998777788899999998666 56666699999999999999988887776655555
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 008689 530 KEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 530 ~~~~~~~~~~~~~mf~~~ 547 (557)
...+ .-+.+|.+....+
T Consensus 84 ~d~~-~aR~lfer~i~~l 100 (280)
T PF05843_consen 84 NDIN-NARALFERAISSL 100 (280)
T ss_dssp T-HH-HHHHHHHHHCCTS
T ss_pred CcHH-HHHHHHHHHHHhc
Confidence 4333 3345666666554
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.35 E-value=6.7 Score=35.73 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=60.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLEY 522 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--p~n~~~~~~l 522 (557)
...+..+|..|.+.|+++.|++.|.++....... ...+++.-++....++|..+...+.+|..+- +.+.+.+..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3457899999999999999999999998865432 6678899999999999999999999998763 3344444444
Q ss_pred H
Q 008689 523 K 523 (557)
Q Consensus 523 ~ 523 (557)
.
T Consensus 116 k 116 (177)
T PF10602_consen 116 K 116 (177)
T ss_pred H
Confidence 3
No 314
>PRK10941 hypothetical protein; Provisional
Probab=91.13 E-value=1.4 Score=42.95 Aligned_cols=78 Identities=12% Similarity=-0.053 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
.-+.+.=..+.+.++|+.|+++-+..+.+.|.++.. +--+|.+|.+++.+..|+.+++.-++..|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 334555577889999999999999999998876632 44689999999999999999999999999
Q ss_pred CChHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAY 492 (557)
Q Consensus 480 ~~~ka~~~~g~a~ 492 (557)
+.+-+-.-+.+..
T Consensus 247 ~dp~a~~ik~ql~ 259 (269)
T PRK10941 247 EDPISEMIRAQIH 259 (269)
T ss_pred CchhHHHHHHHHH
Confidence 9988766555543
No 315
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=4.7 Score=38.64 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----cC
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD 478 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~ 478 (557)
....+.+...|.|.-....|++.++..+.. ...+...|+.+.++.|+-+.|..+++++-+ ++
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~--------------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ--------------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc--------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 345667777788888888888888754321 223466789999999999999999996543 22
Q ss_pred --CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 479 --p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
-.+.-.+.+.+.+|...++|-+|...|.+.+..||.+..+....+.|
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 23345666777777888899999999999999999987555544444
No 316
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.06 E-value=2.7 Score=49.03 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=70.8
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
..++...|...+++++-+.|.....+||..-|. +....-.-|+.-.+.|+-+.++..|+-.+.-+|.-.+++..+-..
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 456778889999999999999999999999887 788888899999999999999999999999999988888777554
Q ss_pred HHH
Q 008689 526 KEK 528 (557)
Q Consensus 526 ~~~ 528 (557)
..+
T Consensus 1644 eik 1646 (1710)
T KOG1070|consen 1644 EIK 1646 (1710)
T ss_pred HHc
Confidence 433
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.94 E-value=2.7 Score=48.26 Aligned_cols=120 Identities=11% Similarity=0.049 Sum_probs=83.5
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
.-.+.++..+.|++|+..|++...-.|....-. +..-..-++++ ..|.-.-....|.+|+.-+++.-. .|.-+-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 553 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY----EAQFRLGITLL-EKASEQGDPRDFTQALSEFSYLHG-GVGAPL 553 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch----HHHHHhhHHHH-HHHHhcCChHHHHHHHHHHHHhcC-CCCCch
Confidence 445678888999999999999887776544322 22222222221 222222223468888888887543 466677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
-|.-+|.+|..+++|+|-+++|..|++-.|+.+.+-.....+--++
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 8999999999999999999999999999999987766665554333
No 318
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.89 E-value=0.23 Score=51.09 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCC-CCh---HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTS-FGD---EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~-~~~~~~~-~~~---~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
......+.|..+|+.+.|+.++..|.+|++ .+..... ... --....+ .-.+.+|.+..|+..|+...|.+++.
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nk--s~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNK--SMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhccc--chhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 344556889999999999999999999996 3322110 000 0001111 22346799999999999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHhc
Q 008689 473 KVLDLDSRNVKALYRRAQAYIQM 495 (557)
Q Consensus 473 ~al~~~p~~~ka~~~~g~a~~~l 495 (557)
++...-..|+..|.|+|.|.+.-
T Consensus 360 ~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 99998888999999999988753
No 319
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.84 E-value=0.84 Score=30.93 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+.+|.+|..+|+++.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 320
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=3.4 Score=43.74 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=69.2
Q ss_pred chhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHH
Q 008689 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405 (557)
Q Consensus 326 ~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~ 405 (557)
+.-..+..++..|.++....+.++..|+- ...+..|...+..
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q 297 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ 297 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence 45567889999999999988887664432 2334455555555
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHh--hhcCCCChHH-HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYI--EYDTSFGDEE-KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~--~~~~~~~~~~-~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
|..-..+.-.++|+-.+.+|+.-. +......-+- .-+.+.+...++ .--....+.|.|..|.++|+-.+.++|.
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 555555555666666666666421 1111000000 112222333333 2334455789999999999999999998
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.77 E-value=3 Score=37.04 Aligned_cols=80 Identities=18% Similarity=-0.010 Sum_probs=62.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+..+..+-++.++...+...+..+--+.|.+...-.--|..|...|+|.+|+..|+.+..-.|..+.++..+..|...+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 44566666777788888888877777888888888888888888888888888888887777888777777777765554
No 322
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.33 E-value=0.93 Score=29.22 Aligned_cols=33 Identities=24% Similarity=0.128 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 008689 483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN 515 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~--~~~al~l~p~n 515 (557)
+.++-.|..+...|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566677777777777777777 44666666654
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=3.1 Score=43.14 Aligned_cols=100 Identities=23% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVL 475 (557)
Q Consensus 398 ~a~~~k~~G~~~~~-~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al 475 (557)
.|..+.+.|..+|. .+|++.|..+.++|..+....+.+. ..+-..+.-||.||.... .+..|.....+++
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 45666677777765 8999999999999999887666553 233344667888888888 8999999999999
Q ss_pred ccCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 008689 476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDI 505 (557)
Q Consensus 476 ~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~ 505 (557)
++...+ .|.+|.+++.+.-..+|.-|++.+
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 986554 678899999999999999888874
No 324
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=90.13 E-value=2.3 Score=32.56 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNA 455 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla 455 (557)
+..|..+..+|...-+.++|.+|+.+|..|++++.... ...++...+.-..++.-|+.+|
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999876532 1223333333333444454444
No 325
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=90.05 E-value=1.9 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+..|..+..+|...-..|+|++|+.+|..|++++-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999998754
No 326
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.76 E-value=2.8 Score=31.47 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
++.|..+..+|..+-+.|+|++|+.+|.+|++.+..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999998653
No 327
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.59 E-value=2.4 Score=32.54 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
++.|..+..+|...-..|+|++|+.+|.+|++.+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999999999998754
No 328
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=6 Score=44.04 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-------hhCHHHH-
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQA- 467 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~~A- 467 (557)
+.......+.|-.+...|+|.+|+++|+.+|-..+-.-..+.++..+++++...|..-+....+. ....+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 56677778899999999999999999999998777655555566666666665553333322211 2234444
Q ss_pred -HHHHHHHHccCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 468 -EKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 468 -~~~~~~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
+..|-.-+.+.|-+ .-|+..--.++.++++|..|-....+.+++.|..+.+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 22222234555655 4444445568899999999999999999999987543
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.52 E-value=6.7 Score=39.74 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=86.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.+..+...+..+.+.|+|+.|.....++....+..... ...+..-.|......|+..+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788888999999999999999988765322211 011133445555666777777776666655
Q ss_pred c--C--------------------------------CCChHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCH
Q 008689 477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 477 ~--~--------------------------------p~~~ka~~~~g~a~~~l------g~~~~A~~~~~~al~l~p~n~ 516 (557)
. . ....++++.+|.-...+ +.++++++.|+.|.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 0 0 11256777888877778 888999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008689 517 DVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 517 ~~~~~l~~l~~~~~~~~ 533 (557)
.+...++.....+-...
T Consensus 293 k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESD 309 (352)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777766655554333
No 330
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.37 E-value=0.49 Score=44.11 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
..+++.+++..|.+.|++|+.+.+....- +..++....|.++++.|...+.++|++||.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34677899999999999999988765433 6788999999999999999999999999876
No 331
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=89.01 E-value=3.9 Score=31.63 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHHHHHHHHhhHHHHHHhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL 461 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~k~ 461 (557)
...|....+.|..+-..|+.++|+.+|+++++.+.... ....++++.+..++.+.-.|+..+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888889999999999999999876532 2244677777777777777777665443
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.92 E-value=4.8 Score=41.28 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC--CC------------C-hHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--SF------------G-DEEKKQAKALKVACNLNNAACKLKLKD 463 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~--~~------------~-~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (557)
+..+.+.+..+..+|++..|....++|+-.++... .+ . +-...+.+.+... .........+.|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla-l~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA-LFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH-HHHHHHHHHhcCc
Confidence 55667777788888888888888888876554210 00 0 0012223333333 3456677788999
Q ss_pred HHHHHHHHHHHHccCCC
Q 008689 464 YKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~ 480 (557)
|..|++.|+-.+.+||.
T Consensus 119 ~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999998
No 333
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.69 E-value=2.3 Score=41.09 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=48.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+.|.++|+.|+|+.|+..|..+........- ..+...+...+..|+.++++.+..+..|-+.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 347888999999999999999988655443221 134555677888899999998888888877654
No 334
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=88.57 E-value=3.7 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=30.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+..|..+...|...-+.|+|++|+.+|..|++.+-.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 356777788889999999999999999999998754
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.56 E-value=4.9 Score=43.90 Aligned_cols=92 Identities=25% Similarity=0.212 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcC-----cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHH
Q 008689 402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK 473 (557)
Q Consensus 402 ~k~~G~~~~~~~-----~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~ 473 (557)
....|..|++.. ++..|+..|.+|.+.-..+. .+++|.||..-. ++..|.+++..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a-----------------~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA-----------------QYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHcCCccccHHHHHHHHHH
Confidence 445777777743 78899999999998754332 567888888765 67899999998
Q ss_pred HHccCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 008689 474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID 512 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l----g~~~~A~~~~~~al~l~ 512 (557)
|... .++.|++++|.||..- .+...|..++++|-..+
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8764 6789999999998764 46789999999999887
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.49 E-value=0.67 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIK 506 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~ 506 (557)
.+++.+|.+|..+|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356666777777777777766554
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=6.8 Score=43.44 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.+.-++..|+.+|++|+|++|...|.+++..++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 3567889999999999999999999999987654
No 338
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.39 E-value=3 Score=41.26 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=57.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
.+-.-..+|-.|+...-...+.+.+.....+.+. ..-++--+|-|....|-|.+|.+..+++|++++.+
T Consensus 140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-----------~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-----------YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred hhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-----------HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 3344455666777777777777666543322211 22234456788889999999999999999999887
Q ss_pred hHHHHHHHHHHHhcCCHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEF 503 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~ 503 (557)
..|..-++-++...+++.++.+
T Consensus 209 ~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 209 CWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred hHHHHHHHHHHHhcchhhhHHH
Confidence 6655544444444444444333
No 339
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.90 E-value=15 Score=36.28 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=69.5
Q ss_pred HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCC
Q 008689 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS------RN--VKALYRRAQAYIQMADLDLAEFDIKKALE--IDPD 514 (557)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p------~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~--l~p~ 514 (557)
+....+...||..|-+.++|..|.....- +.++. .+ ...+.|+|.+|+..++-.+|....+++-- .+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 34566778899999999999998876653 33332 11 33466899999999999999999998754 3668
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 008689 515 NRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 515 n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
|..+..+++.|..+.-..+.+.
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkF 200 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKF 200 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988887666543
No 340
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.71 E-value=16 Score=37.43 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
.+--++.|..-.+++++|++.+++++++.|.......-++.+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 334567778888999999999999999999887655555444
No 341
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.55 E-value=2.2 Score=43.95 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=65.1
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH-HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE 521 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~--n~~~~~~ 521 (557)
-.+++++..|-||+.+++|.+|++.++.+|..-. ..| .++.+.--|-. .+..|+....+--++.+.|. +..+...
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~-r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~ 240 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ-RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ 240 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 4567788999999999999999999999986421 112 22233222222 34456677777778888886 3444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 522 YKT-LKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 522 l~~-l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
++. ...++.+-...+.+.|..+|...-
T Consensus 241 lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 241 LKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence 432 344444444445678888887653
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.40 E-value=3.2 Score=42.58 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc---------c-----
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD---------L----- 477 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~---------~----- 477 (557)
...|+++...|..|+......... ..-....+.+..++.+|.++..+|++..|-+.+++||- .
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~---~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALI---NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHH---HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 345777888887777643211100 11122334677788999999999999999999999863 2
Q ss_pred C------------CCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Q 008689 478 D------------SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR 516 (557)
Q Consensus 478 ~------------p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-n~ 516 (557)
+ +.| ..|+||..+.+.+.|-+.-|.+.++-.+++||. |+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 1 112 568999999999999999999999999999999 55
No 343
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.13 E-value=3.6 Score=31.46 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=31.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+.|..+..+|...-..|+|++|+..|..|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 46777888899999999999999999999999875
No 344
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.59 E-value=7.7 Score=32.49 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=56.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
|-.+--....+...|+|++++..-.+||.++........++. .+-+.+-+|+|.++-.+|..++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455666777888999999999999999999887665544333 234555679999999999999999999998653
No 345
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=86.44 E-value=8.6 Score=36.47 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-HHHHH-HHHHHHHc-cC-CCChHH
Q 008689 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAE-KLCTKVLD-LD-SRNVKA 484 (557)
Q Consensus 409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-~~~A~-~~~~~al~-~~-p~~~ka 484 (557)
+|..|+|+.|+....-||+..-..+.-. ......+.+.-..+-|....+.|+ ++-+. ..+..+.. .+ |+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 4557899999999999998744332110 001112233334455555555554 11111 11122211 11 444555
Q ss_pred HHHH--HHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 485 LYRR--AQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 485 ~~~~--g~a~~---------~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
-+.+ |.+++ ..++...|+..|++|+.++|+- -++..++++.++++.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence 4444 44442 3457889999999999999875 477788888777753
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.36 E-value=5.6 Score=37.49 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.|=-++..++......-+..|+..|.+|...-...... .-...+.+-+|..+.++|++++|+.++.+++..
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33334455554445555677777777777653321111 012234667899999999999999999999986
Q ss_pred CCCCh-HHHHHHHHH
Q 008689 478 DSRNV-KALYRRAQA 491 (557)
Q Consensus 478 ~p~~~-ka~~~~g~a 491 (557)
...+. ..+.++|+-
T Consensus 195 ~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 195 KKASKEPKLKDMARD 209 (214)
T ss_pred CCCCCcHHHHHHHHH
Confidence 44332 356666553
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.33 E-value=23 Score=39.28 Aligned_cols=108 Identities=20% Similarity=0.114 Sum_probs=83.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCC----hHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (557)
+..+.-.|......+..++|.+++.+|++...... ..+ .+...-...++..++..++.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 34445557888888888899999999999876533 111 1233445566778888899999999999999
Q ss_pred HHHHHHHHccC---C------CChHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689 468 EKLCTKVLDLD---S------RNVKALYRRAQAYIQMADLDLAEFDIK 506 (557)
Q Consensus 468 ~~~~~~al~~~---p------~~~ka~~~~g~a~~~lg~~~~A~~~~~ 506 (557)
......+.... | -.+..+|-.|..+...|+.+.|+..|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99988876543 2 247789999999999999999999998
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.08 E-value=17 Score=40.29 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred HHhhhHHHHHHHH-HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 398 AAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~-~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
.|......|..++ ...+++.|..+..+|+.++.. ... ..++-.+.+-++.+|.+.+... |+..|+++++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 4667778888888 588999999999999998876 322 2344555556688888888777 9999999988
Q ss_pred cCCC----ChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 008689 477 LDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLE 521 (557)
Q Consensus 477 ~~p~----~~ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~--p~n~~~~~~ 521 (557)
.-.+ .+.-.||.-++... .+++..|++.++....+. ..++.+...
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 6544 45566666544333 369999999999988876 455544443
No 349
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=85.64 E-value=9.3 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.2
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
...|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999999998764
No 350
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.56 E-value=5.3 Score=46.46 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.+.+++..+..+++.+++++|+..-.+|.-+.......+..+ ....|.|++...+..++...|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 4467788889999999999999998888886655433322111 233488999999999999999999999876
Q ss_pred c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
+ .|.-.-..-+.++.+..+++++.|+..++.|++++
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4 34445556788888999999999999999999864
No 351
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.34 E-value=1.4 Score=28.82 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+|..||.+-+..++|.+|+.++.++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999864
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.15 E-value=8.3 Score=36.00 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=62.0
Q ss_pred HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
.-.++.+...+|+.....-++-+|.+.-.-.-+-+.|+-.|+|++|..-++-+-.++|+...-...++.+....
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 34567888999999999999999999888888889999999999999999999999999875555555543333
No 353
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.11 E-value=35 Score=37.10 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=86.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
....|..|-..++.+.|...|.+|....-. .. .....++++-|..-++..+++.|++...+|+.. |.+
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~--~v---------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYK--TV---------EDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--ch---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 445667777788888888888888764211 11 124556888888889999999999999888765 222
Q ss_pred -------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 482 -------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 482 -------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
.+.|-..+.....+|-++.....|++.+.|.-..+.+..+++...+..+-.++.-
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 3444455666667788888888888888888888877777777655554444433
No 354
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.70 E-value=56 Score=33.82 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=72.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHH------HH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK------QA 467 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~------~A 467 (557)
..+-.+.-+.+.|..++++++|..|+-+...|=+.+....+. .-+.-.-...+.+.+-+||+.+++.. .-
T Consensus 158 kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL~DAe~R 233 (568)
T KOG2561|consen 158 KALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVR 233 (568)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccCChHHHH
Confidence 345667889999999999999999999998887765433211 01111112233455678999987632 22
Q ss_pred HHHHHHHHcc------------C-CCC-hHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 008689 468 EKLCTKVLDL------------D-SRN-VKALYR-----RAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 468 ~~~~~~al~~------------~-p~~-~ka~~~-----~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+..|++.+.. . +.. -+|+|- .|...++.|+-++|.++|+.|.+
T Consensus 234 L~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 234 LVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3333333321 1 111 345553 48999999999999999998864
No 355
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=19 Score=36.90 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=67.3
Q ss_pred HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---
Q 008689 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY--- 532 (557)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~--- 532 (557)
..++..+++-+.+...+|..+|+..-+|+.|..++.+... +..=++.+++++++||.|-..+..-+-+....+..
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 3445567888899999999999999999999999998764 68888999999999999976666555555555444
Q ss_pred HHHHHHHHHHHhhh
Q 008689 533 NKKEAKFYGNMFAK 546 (557)
Q Consensus 533 ~~~~~~~~~~mf~~ 546 (557)
...+-....+|...
T Consensus 165 ~~~El~ftt~~I~~ 178 (421)
T KOG0529|consen 165 EKEELEFTTKLIND 178 (421)
T ss_pred chhHHHHHHHHHhc
Confidence 45555555555544
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.83 E-value=8.1 Score=39.48 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=53.6
Q ss_pred hCHHHHHHHHHHHHccCC-C-----C---h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDS-R-----N---V--KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p-~-----~---~--ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
++|..|++.|++.-.+.. . + + -.--.+..||+.+++-+.|+....+.+.++|...--.-..+.|.+++.
T Consensus 197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~Le 276 (569)
T PF15015_consen 197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLE 276 (569)
T ss_pred HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHH
Confidence 455666666666544332 1 1 1 112267899999999999999999999999998544445555778888
Q ss_pred HHHHHHHHH
Q 008689 531 EYNKKEAKF 539 (557)
Q Consensus 531 ~~~~~~~~~ 539 (557)
++.+.-+..
T Consensus 277 Ry~eAarSa 285 (569)
T PF15015_consen 277 RYSEAARSA 285 (569)
T ss_pred HHHHHHHHH
Confidence 777665543
No 357
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.82 E-value=28 Score=34.28 Aligned_cols=97 Identities=26% Similarity=0.106 Sum_probs=70.8
Q ss_pred hhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----h--CHHHHHH
Q 008689 401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK 469 (557)
Q Consensus 401 ~~k~~G~~~~~----~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~A~~ 469 (557)
.....|..++. ..++.+|...|.+|.+.-.... ..+.++++.+|..- - ....|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 45567777766 4589999999999998643221 22245666666653 1 2347999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p 513 (557)
.+.++-... +..+.+++|.+|.. ..++.+|..+|++|-+...
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999987765 88999999988865 3488999999999998876
No 358
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.74 E-value=3.5 Score=40.31 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh
Q 008689 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (557)
Q Consensus 418 A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 494 (557)
|.++|.+|+.++|..... |+.+|..+...++.-.|+-+|-+++........|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 778999999999987654 88999999999999999999999988766667788888777777
No 359
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.68 E-value=4.2 Score=39.76 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=51.6
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
|+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-+|-+++...--.+.+...|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765557777777776555
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.63 E-value=26 Score=35.24 Aligned_cols=85 Identities=9% Similarity=0.147 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHH-HHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK-MKEY-NKKEAKFYG 541 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~-~~~~-~~~~~~~~~ 541 (557)
.+..+..+++||+.+|++.+.+..+=.+..++.+-++..+-+++++..+|++..++..+-...+. .... -..-+..|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56677888889999999999999988899999999999999999999999998777665443322 2211 223345666
Q ss_pred HHhhhcc
Q 008689 542 NMFAKMN 548 (557)
Q Consensus 542 ~mf~~~~ 548 (557)
+.++.+.
T Consensus 127 ~~l~~L~ 133 (321)
T PF08424_consen 127 KCLRALS 133 (321)
T ss_pred HHHHHHH
Confidence 6666654
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=5.7 Score=40.37 Aligned_cols=68 Identities=22% Similarity=0.093 Sum_probs=55.3
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLD----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~----p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
.+.+-|-.+|+..+.|+.|-+...++---+ ..++..+|..|.+.+-+.+|..|.++|.+|+...|...
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 334445678999999999999888875322 23477788999999999999999999999999999854
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.53 E-value=9.1 Score=42.48 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=65.8
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhc-----CCCChHH--HHHHH-H-HHHHHHhhHHHHHHhhhCHHHHHHHHHHH---
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYD-----TSFGDEE--KKQAK-A-LKVACNLNNAACKLKLKDYKQAEKLCTKV--- 474 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~-----~~~~~~~--~~~~~-~-~~~~~~~nla~~~~k~~~~~~A~~~~~~a--- 474 (557)
....+.|..++|...|+++-+++--+ ...+.+- ..+.+ . ..-..|+|.|...-..++.+.|+++|+++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 34456677888888888877653211 1111111 11111 1 13344778888888888899999999875
Q ss_pred -------HccCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 475 -------LDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 475 -------l~~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|.-+|.. .+.|-+.|+-+...|+.+.|+..|..|-.
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 2233432 34455668888889999999999988764
No 363
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.36 E-value=21 Score=29.58 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChH---HHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~p~n~ 516 (557)
+|.-++..|++-+|++..+..+..++++.. .++..|..+..+.. +-.|+++|.++..+.|..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 577889999999999999999998877764 45556777766653 2478999999999999973
No 364
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.28 E-value=14 Score=31.73 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=38.8
Q ss_pred HhhHHHHHHhhhCHHHHHH-HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 451 NLNNAACKLKLKDYKQAEK-LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~-~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|.++|.-++-...-+..++ .++.....+..++..++.+|.||.++|+..+|-+.+++|-+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5666665554444333333 344444455678999999999999999999999999988654
No 365
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.26 E-value=15 Score=32.13 Aligned_cols=79 Identities=11% Similarity=-0.061 Sum_probs=56.5
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
.++..+-+...+..++.......--+.|++...-.--|..|...|+|.+|+..|+....-.+..+-.+..+..|...+.
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 3444555557777777777777666778887777778888888888888888888777766666666677776655554
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.26 E-value=13 Score=38.80 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=73.1
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (557)
-...+..|+...|-+....+++-.+.++.. ..-++..+..+|.|+.|..+..-+-..-..-.+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~ 360 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL 360 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH
Confidence 345567888888888888888877766643 33467788888999998888877766555666777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~ 519 (557)
--+-..+.+|+++++|...-...|.-+-+++++.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 7777788888899888888777776665555443
No 367
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.92 E-value=24 Score=35.92 Aligned_cols=105 Identities=21% Similarity=0.149 Sum_probs=72.0
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
...|+|+.|++..........- +....+..+..++...|...+. -+...|..+..+++++.|+.+-+-.--+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 4455555555555444332211 1122334455555544444333 3589999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
.+|...|+..++-..++.+-+.+|.- ++...+.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP-~ia~lY~ 303 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHP-DIALLYV 303 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCCh-HHHHHHH
Confidence 99999999999999999999998853 3444443
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.86 E-value=2.1 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
+++++|..+..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46799999999999999998875
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.57 E-value=16 Score=35.20 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC--CC----ChHHHHHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--SR----NVKALYRR 488 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--p~----~~ka~~~~ 488 (557)
-...+..+.+|+..+..... ..+...+...+|.-|++.|+|++|+..++.++..- .. ....+.++
T Consensus 154 s~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l 224 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL 224 (247)
T ss_pred HHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34556677777766554332 24455567789999999999999999999996532 11 24567788
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 008689 489 AQAYIQMADLDLAEFDIKKA 508 (557)
Q Consensus 489 g~a~~~lg~~~~A~~~~~~a 508 (557)
..|+..+|+.+..+...-+.
T Consensus 225 ~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 225 LECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 89999999988877665443
No 370
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.48 E-value=9.3 Score=33.31 Aligned_cols=44 Identities=27% Similarity=0.279 Sum_probs=21.2
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg 496 (557)
.+|...+..++|..|++.++.++..+|+|..|..-++.+|.+++
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555554444
No 371
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.20 E-value=43 Score=29.83 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY-DTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
.+..+.+......+.++...+...+. |++.+.. .... -.--|..++..++|.+|+..++.+..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLD-ALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHH-HHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 35556677777777888888776664 5555433 2222 33467889999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
-.|..+-+---++.|+..+++.+= +.+-..+++-.+ +.+.....+.+..
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 889887666677888888887631 112233444443 5555666555533
No 372
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.98 E-value=4.2 Score=35.42 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
.-......+++.++..|+|.-|.+.++.++..+|+|..++.....+...+....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356778899999999999999999999999999999999999888877775543
No 373
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.15 E-value=23 Score=37.92 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=59.1
Q ss_pred HHHHhhHHHHHHhhhC-HHHHHHHHHHHHccCCCChHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 448 VACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRR------AQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~-~~~A~~~~~~al~~~p~~~ka~~~~------g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
..++.||+.+....+. +.-+...+..+....|+|...+..+ ++....+++..+|...+.++..+.|.+..+..
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 3457788877666664 4555556666899999998877777 88888899999999999999999999965555
Q ss_pred HHHH
Q 008689 521 EYKT 524 (557)
Q Consensus 521 ~l~~ 524 (557)
.+--
T Consensus 181 ~~~~ 184 (620)
T COG3914 181 ALMT 184 (620)
T ss_pred HHHH
Confidence 4433
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.51 E-value=23 Score=34.88 Aligned_cols=80 Identities=24% Similarity=0.118 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 416 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
..|+..|.+|..... .....+++.+|.. ..++.+|+.++.++-+... ..+.|+.+ +
T Consensus 172 ~~A~~~~~~aa~~~~-----------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELGN-----------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhcC-----------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 367777777766542 2346788988866 4589999999999999876 89999999 6
Q ss_pred HHhcC---------------CHHHHHHHHHHHHHhCCCC
Q 008689 492 YIQMA---------------DLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 492 ~~~lg---------------~~~~A~~~~~~al~l~p~n 515 (557)
+...| +...|..++.++-...+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 7788888888888877665
No 375
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=78.42 E-value=17 Score=37.13 Aligned_cols=82 Identities=13% Similarity=0.012 Sum_probs=66.4
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHcc----CCCChHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHhCCCCHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKA-LEIDPDNRDVKLE 521 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~---lg~~~~A~~~~~~a-l~l~p~n~~~~~~ 521 (557)
...|+-.+|...++|+.-++..+..-.+ -++....-+..|.|+-. -|+.++|+..+..+ .+-++.+++..-.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3558888999999999999988887665 34566777888999999 99999999999994 4556677888888
Q ss_pred HHHHHHHHHH
Q 008689 522 YKTLKEKMKE 531 (557)
Q Consensus 522 l~~l~~~~~~ 531 (557)
++++.+.+-.
T Consensus 223 ~GRIyKD~~~ 232 (374)
T PF13281_consen 223 LGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHH
Confidence 8888776643
No 376
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=78.23 E-value=7 Score=37.81 Aligned_cols=72 Identities=15% Similarity=0.017 Sum_probs=60.4
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.=..+.+.+++..|.++-.+.+.+.|.++.. ..-+|.+|.+++.+.-|++++...++..|+...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3356777899999999999999998877643 4579999999999999999999999999998887
Q ss_pred HHHHHHH
Q 008689 485 LYRRAQA 491 (557)
Q Consensus 485 ~~~~g~a 491 (557)
-.-+++.
T Consensus 252 ~~ir~~l 258 (269)
T COG2912 252 EMIRAQL 258 (269)
T ss_pred HHHHHHH
Confidence 6655543
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.00 E-value=27 Score=36.05 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=63.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--hhCHHHHHHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKVL 475 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--~~~~~~A~~~~~~al 475 (557)
.+.....++..+|.+++|..|.+.+...+.-++.... ...+.+++.+|.. .-+|.+|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566777888999999999999999998865322111 1234455555544 446677777776554
Q ss_pred ccCC------------------------------C--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 476 DLDS------------------------------R--------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 476 ~~~p------------------------------~--------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
...- . -..-++.-|.--...|+|+.|..-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3210 0 0112333444445678899888888888865
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.59 E-value=14 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=27.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
.+.+|.+++..|+|+.|++.+-.++..++++
T Consensus 25 r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 25 RYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 6789999999999999999999999999877
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.52 E-value=6 Score=25.47 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=24.2
Q ss_pred HhhHHHHHHhhhCHHHHHHH--HHHHHccCCCC
Q 008689 451 NLNNAACKLKLKDYKQAEKL--CTKVLDLDSRN 481 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~--~~~al~~~p~~ 481 (557)
..-+|.++..+|+|++|++. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44679999999999999999 54888887764
No 380
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.40 E-value=15 Score=42.91 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+....+.|......+.+..|.+ ..+++.+..+- .-..+.-...||.-+|..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456777788888888888888887 66777665421 1223344667788999999999999999999999865
Q ss_pred cC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 008689 477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 477 ~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~p~n~~~~~~l~~l~~~~ 529 (557)
+. |+...+|-+++.......+...|...+.+|+.+ .|.-..+...+..+..-+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 42 455788999999999999999999999999875 455555555555553333
No 381
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=23 Score=37.91 Aligned_cols=69 Identities=23% Similarity=0.041 Sum_probs=59.5
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK-ALEIDPDNRDVKLEY 522 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~-al~l~p~n~~~~~~l 522 (557)
++..+...+....+.-....++..+|++.+++.++|.+....+....|...+.. |....|+|.+....+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 677777788888889999999999999999999999999998887777666655 999999998777766
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.32 E-value=6.5 Score=42.96 Aligned_cols=116 Identities=19% Similarity=0.052 Sum_probs=75.0
Q ss_pred HhhhHHHHHHHHHc-----CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-----CHHHHH
Q 008689 399 AGKKKEQGNTLFKA-----GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAE 468 (557)
Q Consensus 399 a~~~k~~G~~~~~~-----~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-----~~~~A~ 468 (557)
+......|..++.- ++.+.|+..|+.|+.-+. ...........+.+|.||++-. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~----------~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFK----------KAATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH----------HHHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 44455566666543 468888888887776411 0111112334667888888843 678888
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
.++.++-.+ .|+.+.|++|.+|..-. ++..|.++|..|...- +..+...+..|...
T Consensus 314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 314 KLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 888888776 46778888888888876 5678888888877653 33455555555433
No 383
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.90 E-value=22 Score=39.62 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=72.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHH-------HhhhcCCCChHHHHHHH-HHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVK-------YIEYDTSFGDEEKKQAK-ALKVACNLNNAACKLKLKDYKQAEK 469 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~-------~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~k~~~~~~A~~ 469 (557)
.-..+.+.+..+-.+++.+.|+.+|.++-. ++..++.. ...-.+ .--.++|..-|+..-..|+.+.|+.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~---~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ---IEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH---HHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 334556666666667777777777776432 11111100 000011 1123567778888888899888888
Q ss_pred HHHHHHcc---------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 470 LCTKVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 470 ~~~~al~~---------------------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+|..|-.. ...+-.|-|.+|+-|...|++.+|+..|.+|..+
T Consensus 934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88877431 2346678999999999999999999999887654
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.55 E-value=3.9 Score=42.20 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=47.7
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHcc---------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDL---------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~---------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-|..+|.-+|+|..|++..+-+ .+ -+.++..+|..|-||+.+++|.+|++.|...+..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999987654 22 2456889999999999999999999999988743
No 385
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.35 E-value=9.2 Score=40.25 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l---g~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
..++..|+.+|.+++..-|.....|-+||.++++. |+--.|+.++..|++++|....+.-.|.++...+.+..+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 45678899999999999999999999999999986 4667899999999999999877777777776666665554
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.33 E-value=21 Score=27.55 Aligned_cols=56 Identities=16% Similarity=-0.007 Sum_probs=42.1
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+.=.+..++..+|+...++||+..++.. .++-.+.+||+..|+|.+++++..+=+.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334467889999999999999876654 4455678899999999998877655443
No 387
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=75.84 E-value=27 Score=38.18 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIK 506 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 506 (557)
|++.+.+=.+|.++...|--++|.+.|-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 6666666666777777776666666653
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.60 E-value=4 Score=27.64 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.5
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.++||.+|+.+|+++.|....++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 358999999999999999999999953
No 389
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=20 Score=40.95 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC-
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (557)
....-|+.+|..+.|+.|.-+|...-. +..||.....+|+|+.|....++|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 356789999999999999888875332 55788888899999999999888743210
Q ss_pred ------C------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 480 ------R------------------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 480 ------~------------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
. ++.-+-.+-.-|...|-|++-+..++.+|-|+-..-....+|+.+..+-+-
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 0 111222233446667888888989999888877776677777777665543
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.78 E-value=30 Score=26.51 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 008689 499 DLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 499 ~~A~~~~~~al~l~p~n~~ 517 (557)
.+|++.|.+++.+.|+++.
T Consensus 30 ~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhCCChHH
Confidence 3444556666677788764
No 391
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.48 E-value=9.8 Score=36.44 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=72.8
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC---C--
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR---N-- 481 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~---~-- 481 (557)
..++..++.-.|+..|...+.-.+.+-..--.... -...+|.-...|+. --....|.++++.||-+-.. .
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~----~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAA----CLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhh----hHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcce
Confidence 34566667777788777766544433221000000 01112222333332 23456788888888765321 1
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 482 -VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 482 -~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
--+.+|++.+|+.+.+|+.|..+|.+|+.+.-++. .-....+|..++....++++
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~-L~~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT-LPLWEDRLETKLNKKNKKQK 133 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHhHhhHhhc
Confidence 34678999999999999999999999999865543 23333445555554444443
No 392
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.41 E-value=16 Score=35.82 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
+.-.+..+++.+|...+..++..+|.+..+..-++.||...|+.+.|...|..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34445688999999999999999999999999999999999999877766644
No 393
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=73.32 E-value=24 Score=36.63 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------C--CChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------S--FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~----------~--~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (557)
...+.|...+...++..|+..+.+||+...-.. . ....+..+.......+|..+ +-..=+...++
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~---fg~~le~a~Cl 109 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAI---FGHLLERAACL 109 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHH---HHHHHHHHHHH
Confidence 345678888889999999999999998632110 0 00000000000000011111 11112334456
Q ss_pred HHHHHHHccCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 469 KLCTKVLDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 469 ~~~~~al~~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
..|...+.-.+.. -+.|-.+=.||.+.|++.+|++.-...+--+|++.+++..+.--+
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 6666665554433 356777889999999999999999999999999998888776544
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.17 E-value=33 Score=33.46 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----c--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----L--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 443 ~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..-++..+-+.++..+++.++|.+|+...+.++. + .++-...+.--+++|+++.+..++...+..|..+
T Consensus 120 r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 120 RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3446777778889999999999999999988764 2 2455778888899999999999998888777654
No 395
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.47 E-value=64 Score=34.39 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=64.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+...+..+.-.|+-+.|+..+..++. ...+++...|+.-+|.++.-+.+|..|-.++...... .++
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de-sdW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE-SDW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hhh
Confidence 33455566666666777777766654 2345667778999999999999999999999988776 467
Q ss_pred hHHHHHHHH--HH--------HhcCCHHHHHHHHHHHH
Q 008689 482 VKALYRRAQ--AY--------IQMADLDLAEFDIKKAL 509 (557)
Q Consensus 482 ~ka~~~~g~--a~--------~~lg~~~~A~~~~~~al 509 (557)
.+|+|..-. || ...++-++|...++.+.
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 888886533 33 22344455555554443
No 396
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=72.45 E-value=37 Score=36.91 Aligned_cols=115 Identities=9% Similarity=0.073 Sum_probs=63.1
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CC-Ch---HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SF-GD---EEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~-~~---~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (557)
.-+.+..+-+.|..-++..+++.|+++..+|..+-.... .. .+ .+..--+++ +++.-.+-.--..|-++.+..
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl--kiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL--KIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH--HHHHHHHHHHHHhccHHHHHH
Confidence 345577788888888899999999999999886532211 00 00 011111111 123333333334455666666
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.|+++|.+.-..+....|.|.-+..-.-|++|.+.|++.+.|
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 666666655555555555555555555555555555555554
No 397
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.93 E-value=58 Score=34.99 Aligned_cols=112 Identities=22% Similarity=0.169 Sum_probs=77.0
Q ss_pred HHHHHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc---
Q 008689 403 KEQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--- 476 (557)
Q Consensus 403 k~~G~~~~~---~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--- 476 (557)
.+.|+.+|+ ...|++|.+.|.-|....+.+... ..-.-..+.+..++.+|.++..+|+.+.|.....++|-
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 345555554 445888888888887754432110 00000123455577889999999998887777777653
Q ss_pred ------------------cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Q 008689 477 ------------------LDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRD 517 (557)
Q Consensus 477 ------------------~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-n~~ 517 (557)
+.|.| ..|+||.=+-+.+.|=+.-|.++++..++++|. |+-
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl 378 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL 378 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch
Confidence 11333 568888888899999999999999999999998 763
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.47 E-value=14 Score=35.99 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
.+.+...+.+|...|.+.+|++..++++.++|-+....+.|..+...+..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 56777889999999999999999999999999998888888777666654
No 399
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=70.46 E-value=43 Score=34.22 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH---HccCCCC
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV---LDLDSRN 481 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a---l~~~p~~ 481 (557)
.+..+|+.++..++......+-+..| |=.++..|....--+.++.-.+++ -.+.|+|
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~eP--------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEP--------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCC--------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 34455666666555555555544333 335666666666555666555554 5578999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
....+-++.+-+.-|+|..|+..-+.+..+.|... +.-++..+
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdI 371 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADI 371 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHH
Confidence 99999999999999999999999999999999863 44444444
No 400
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.39 E-value=25 Score=33.93 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (557)
Q Consensus 465 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (557)
..|+.....+|.++|.|.-.+.-|-.++.+++ +..+-++++...+.-+|.|-++...-+.+...+...--.|..+.++|
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 44555555566666666555544444444433 34555555555566666665555555555444443222344444444
Q ss_pred hh
Q 008689 544 FA 545 (557)
Q Consensus 544 f~ 545 (557)
+.
T Consensus 140 l~ 141 (318)
T KOG0530|consen 140 LD 141 (318)
T ss_pred Hh
Confidence 43
No 401
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.86 E-value=47 Score=33.24 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=57.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHcc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
-+|+|.+..+..=...++...+..+.- -....-++--+|-.+.++|+.++|...|++|+.+.++..+......++
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 458998888888888888877766654 223445566789999999999999999999999998876554444443
No 402
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.94 E-value=27 Score=35.18 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=54.6
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMAD------------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~------------~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
..+++.++-+|.++.+|..+..-.-.+-. .+..+..|++||+.+|++..+...+-++..++-.. .+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-EKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHH
Confidence 45778889999999999988766555543 46778899999999999977666655555544322 223
Q ss_pred HHHHHHHhhhc
Q 008689 537 AKFYGNMFAKM 547 (557)
Q Consensus 537 ~~~~~~mf~~~ 547 (557)
.+.|++++...
T Consensus 85 ~~~we~~l~~~ 95 (321)
T PF08424_consen 85 AKKWEELLFKN 95 (321)
T ss_pred HHHHHHHHHHC
Confidence 44566666553
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.34 E-value=13 Score=22.31 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 496 g~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
|+++.|...|++++...|.+..+...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777778888887777776666655443
No 404
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=68.21 E-value=58 Score=32.65 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=76.7
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
+.|..+...++|.-|..+|=+|.+-+..... ....+..++ |.-|+-+.+.+-+=-.++-....+++++.....
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~----~v~A~~sLK---YMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~ 286 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----DVKALTSLK---YMLLCKIMLNLPDDVAALLSAKLALKYAGRDID 286 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCC----cHHHHHHHH---HHHHHHHHhcCHHHHHHHHhhHHHHhccCcchH
Confidence 4555555667788888888777764332221 123333343 444555555555555567777788998888999
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQ--MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 484 a~~~~g~a~~~--lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|+--.|.|+.+ |.+|+.|+..|+.=+.-|| -++..++.+...+
T Consensus 287 AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 287 AMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNL 331 (411)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHH
Confidence 99999999976 5689999999988777665 3555555554444
No 405
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.20 E-value=15 Score=35.33 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=46.1
Q ss_pred hhhCHHHHHHHHHHHHccCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+..+.++|+..+.+++++.+.. .||+-..-+++..+++|++-++.|++.|..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5668999999999999998875 789999999999999999999999887753
No 406
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.05 E-value=50 Score=30.03 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
..+.++|+|+.|+..|.+|..+....
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999987654
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.03 E-value=45 Score=37.64 Aligned_cols=99 Identities=9% Similarity=-0.026 Sum_probs=74.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
|...--+|.....+++.+.|...-+.++..++..... .++.|+++++.++.-+|+|.+|+.+...+.++.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3334446777788999999999999999998876654 367889999999999999999999999998762
Q ss_pred ----CC--ChHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 008689 479 ----SR--NVKALYRRAQAYIQMAD--LDLAEFDIKK 507 (557)
Q Consensus 479 ----p~--~~ka~~~~g~a~~~lg~--~~~A~~~~~~ 507 (557)
.- ...+.+.++.++...|+ +.+....|..
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 25566678888999993 3344444433
No 408
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.50 E-value=68 Score=33.00 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--hhCHHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCT 472 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--~~~~~~A~~~~~ 472 (557)
.....++..+|++.+|..|...|..++.-..+.. . .-...++.+++.+|.. .=+|++|.+.++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~-----~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAV-----N-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChh-----h-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3444567789999999999999999987633211 1 1123335566666655 446777777777
No 409
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.39 E-value=21 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhCCCC
Q 008689 500 LAEFDIKKALEIDPDN 515 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n 515 (557)
.|++.|.++++.+|+.
T Consensus 33 ~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 33 KAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHhccCCCH
Confidence 3444455555566654
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.31 E-value=22 Score=32.77 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.....++...+.+...| ++..+.+++.++..+|+.++|.....++..+.|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 45666777788888877 67889999999999999999999999999999944
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.89 E-value=20 Score=34.30 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|+.+........ ..+++.+.+|.+..|+. +++.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999877632221 36788889999987755 8899999999988753
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.42 E-value=22 Score=32.94 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN----RDVKLEYKTLKEKM 529 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n----~~~~~~l~~l~~~~ 529 (557)
+...+.+|.-|. ..+-++|+..|.++|++.+.+ +++..-|..+..++
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 444444444333 344455555555555553332 34444444444433
No 413
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.05 E-value=25 Score=37.19 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHH
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAV 426 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al 426 (557)
.++..|...+++|+++-|..+|.++-
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 34455555555555555555554433
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.93 E-value=2.7e+02 Score=31.85 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
...+=.+....+|.+|-.+..++...++..... ..+...+. .--.|.+-+..++++.|+..++.++..-|.+
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~-------~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEF-------QALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 344555666788888888888887776543211 11122222 2234666777899999999999999987765
Q ss_pred -----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 482 -----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 482 -----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.-++...|.+++-+|++++|+.....+.++
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 557778899999999999999999998887
No 415
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.64 E-value=51 Score=25.34 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhCCCCH
Q 008689 500 LAEFDIKKALEIDPDNR 516 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~ 516 (557)
+|++.|..+++..|+..
T Consensus 31 ~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 31 EGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHhhCCCHH
Confidence 34444555566677654
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.49 E-value=64 Score=34.22 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=68.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|+..+-..+...-.+.-..+.|+++|.+. .+--||+.+++||... .-++-....++..+.+-++...-.+|.....+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 34445556666667888999999999985 4567899999999998 456667778888888888887777887776665
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 008689 530 KEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 530 ~~~~~~~~~~~~~mf~~~ 547 (557)
+.....+ .|++...++
T Consensus 146 k~sk~a~--~f~Ka~yrf 161 (711)
T COG1747 146 KKSKAAE--FFGKALYRF 161 (711)
T ss_pred chhhHHH--HHHHHHHHh
Confidence 5444333 555555444
No 417
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=63.45 E-value=72 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.015 Sum_probs=71.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+-.+|-.+-+++++.+|...|.+..+-....+.. ++..++.++-..-+-+++.+.-.......-+..|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~----------lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL----------LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH----------HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc
Confidence 4567888999999999999999988765544322 222345555554455566665555555555667877
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
....+-.|...++.++|.+|++.+..-..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888899999999999999998865544
No 418
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=62.60 E-value=33 Score=33.66 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
...+++..++.++...++++.++..+++.+.++|-+..++..+-.........-... ..|+++-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai-~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAI-RAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHH-HHHHHHHHH
Confidence 357899999999999999999999999999999999877776655544443333322 355555443
No 419
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=61.17 E-value=49 Score=35.29 Aligned_cols=68 Identities=6% Similarity=0.009 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 442 ~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+.+..-+..++.|-.-+..+ -++++...|++.+..-|..+.+|--.....++-.+|+.-...|.++|.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444454443333333 666666677766666666666666666666666666666666666653
No 420
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.69 E-value=70 Score=35.39 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=29.3
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a 508 (557)
.++|.+|+...+..-.. ....+.|-..|.-|..+|+|+-|.+.|.++
T Consensus 745 akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 45666666555433222 223445556788888899998888877554
No 421
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.61 E-value=15 Score=27.40 Aligned_cols=21 Identities=19% Similarity=-0.012 Sum_probs=8.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008689 489 AQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 489 g~a~~~lg~~~~A~~~~~~al 509 (557)
|.-+-..|+|++|+..|.+|+
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333333444444444444433
No 422
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.23 E-value=96 Score=32.49 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC--------------HH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------YK 465 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~--------------~~ 465 (557)
...+..|..+|-.++|+.|...|+.+.+-...+... ...+.++.-.|.|.+..+. ++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le 279 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE 279 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 346778899999999999999999988865443322 2334444445555555442 34
Q ss_pred HHHHHHHHH----HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 466 QAEKLCTKV----LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 466 ~A~~~~~~a----l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.|+..|.++ ......-..+.+..+.++..++.|.+|...+-++...
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 455555552 2222244667778888888999988888877776655
No 423
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.13 E-value=80 Score=33.69 Aligned_cols=65 Identities=25% Similarity=0.149 Sum_probs=54.4
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHcc---CCC----ChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDL---DSR----NVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~---~p~----~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~p~n 515 (557)
++-+|.|...+++-..|..+++.+++. ... -+-|+|.+|..|..++. ..+|++++.+|.....+.
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 556789999999999999999988732 111 27899999999999999 999999999999887665
No 424
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=58.47 E-value=2.1e+02 Score=28.88 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----cC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 443 ~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..-++..+-..|...|+..++|.+|+...+.+++ +| +.-+..+.--+++|+.+.+..+|...+..|-..
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 3346777778899999999999999999988765 22 233667778899999999999999999888754
No 425
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=58.43 E-value=20 Score=33.22 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=42.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (557)
....|. +|.+.+-.+|+..|.+++++...+..++ ..++..||..|.++++++.|--
T Consensus 144 q~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 144 QYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhhh
Confidence 334444 4557899999999999999987664442 3347789999999999998743
No 426
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=22 Score=35.01 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.-++.|..+...+...-+.++|.+|+.+|..|++++-.
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 35667778888888888999999999999999998754
No 427
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.59 E-value=2.1e+02 Score=33.30 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=69.5
Q ss_pred HHHHHHHcCcHHHHHHHHHH------HHHHhhhcCCCCh-HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 405 QGNTLFKAGKYARASKRYEK------AVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~------Al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.|+.....+-|++|...|++ |+..+-.+...-+ ...-..+.-.-.++..+|.+++..+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 46666666777888777765 5554432211100 0000011112346889999999999999999999876
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+++.+|...-.+....|.|++-+.++..|-+-
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45667888888889999999999999888764
No 428
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.03 E-value=1.4e+02 Score=26.33 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=55.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEY-DTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
+.+.........+...+.... .|++.+.. .... -.--+..++..++|.+|++.++.+.+-.+.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lL-dALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAML-DALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 333344444466666655443 34554432 2222 234578889999999999999999988777
Q ss_pred ChHHHHHHHHHHHhcCCHH
Q 008689 481 NVKALYRRAQAYIQMADLD 499 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~ 499 (557)
.+-+---++.|+..+++.+
T Consensus 77 ~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 77 PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred chHHHHHHHHHHHhcCChH
Confidence 7766667788888888853
No 429
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.08 E-value=2e+02 Score=27.96 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=62.5
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (557)
++...-.+|++.-..+|++.|-.-+.+ .-+-.|.-. +.+..+-+++..++++-+|.|...+..|
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW---------------~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR 118 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVW---------------QYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR 118 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHH---------------HHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence 445567888998889998877554432 112222222 2245666777788888888888888777
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHH
Q 008689 489 AQAYIQMADLD-LAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 489 g~a~~~lg~~~-~A~~~~~~al~l~p~n~~~~ 519 (557)
-.....+|+.. .-++..+.++..+..|--+.
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhh
Confidence 77777777776 66777777777776664333
No 430
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.44 E-value=29 Score=36.24 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=63.2
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
.+-..|+|+.|......+-..+...... .--+-..+.++++|..|.....-.|...-.....+--
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~---------------~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i 396 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDST---------------LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV 396 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchH---------------HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence 3334566666666555544443322211 1112345678999999999999888877667776666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 488 RAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
-|-...+|+-+++|.-.+++.+.++|.
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 677778889999999999999999875
No 431
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.73 E-value=38 Score=25.67 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhCCC
Q 008689 501 AEFDIKKALEIDPD 514 (557)
Q Consensus 501 A~~~~~~al~l~p~ 514 (557)
|++.|.++++.+|+
T Consensus 32 a~e~l~~~~~~~~~ 45 (75)
T cd02656 32 ALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHhccCCC
Confidence 33334444445554
No 432
>PF12854 PPR_1: PPR repeat
Probab=52.77 E-value=36 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
|.-.|--+-.+|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566677778888888888877764
No 433
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.66 E-value=1.2e+02 Score=31.21 Aligned_cols=99 Identities=19% Similarity=0.021 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHHHHHHHHHHHccCCCChHHHH-HHHH
Q 008689 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALY-RRAQ 490 (557)
Q Consensus 414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~-~~g~ 490 (557)
-.+.-+..-..|++..|.+... ++-+..+..+.. +|..=+..|+++|+.||.|..+|. ||-.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~a---------------W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGA---------------WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHH---------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 4455555556666665543322 566777777665 478999999999999999988764 5544
Q ss_pred HHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 491 AYIQMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 491 a~~~lg~---~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
+-..... ..+=++...+++.-++.|-.++..-..+..
T Consensus 155 ~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 155 VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 4444444 677788888999888888766665544433
No 434
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.62 E-value=36 Score=20.64 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhc
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~l 495 (557)
.+..+.++|..+|.|..++..|-.++.++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 35677778888888887777666655443
No 435
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=51.47 E-value=2.5e+02 Score=34.07 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
+...+...|-.|+.++..|.|..|++.|..|+..+...
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~ 275 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS 275 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 44567888999999999999999999999999887643
No 436
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.63 E-value=1.6e+02 Score=29.63 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=65.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHH-HHH-HHHHhhHHHHHHh-----hhCHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK-ALK-VACNLNNAACKLK-----LKDYKQAE 468 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~-~~~-~~~~~nla~~~~k-----~~~~~~A~ 468 (557)
.+...-+.-.|-.|+...+++.|.--|++|...-........++.+... ++. ....-|+...... .+.|..-.
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~ 201 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYL 201 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3445666677888889999999988888888654432222222221111 110 0111111111111 11111111
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
..|+. ..+-.|+.+-|++|.++.-.+++.++...+..++-+.|+-+-+.++
T Consensus 202 ~~yea--~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 202 DKYEA--YQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred HHHHh--hcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
Confidence 11110 1123467778888888888888888888888888887774433333
No 437
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=50.54 E-value=23 Score=20.88 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=17.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566677777777777777666543
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.02 E-value=75 Score=34.40 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=37.9
Q ss_pred HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.+.+++++++.|...+.++ ++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4456778888777655544 45556788888888899999999998888654
No 439
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=50.00 E-value=54 Score=27.73 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=59.0
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCC---------------ChHHHHHHHHHHHhcCCHHHHHHHHHHH----HHh
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR---------------NVKALYRRAQAYIQMADLDLAEFDIKKA----LEI 511 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~---------------~~ka~~~~g~a~~~lg~~~~A~~~~~~a----l~l 511 (557)
+.++|...++.+++-.++-+|++|+.+..+ ++-...|+|.-+..+|+-+-.+++++-| +.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 568888999999999999999999864211 2445678999999999999999999654 556
Q ss_pred CCCCH-----HHHHHHHHHHHHHHHH
Q 008689 512 DPDNR-----DVKLEYKTLKEKMKEY 532 (557)
Q Consensus 512 ~p~n~-----~~~~~l~~l~~~~~~~ 532 (557)
-|.-+ ..-..|+-|+..+-.+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDF 109 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHH
Confidence 66532 2344555555555444
No 440
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=49.49 E-value=2.5e+02 Score=28.84 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEI-------DP-------DNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l-------~p-------~n~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (557)
-|+|..|..+...+++-+|+..++.|... .. -...+......+...+.+.++.....|
T Consensus 240 ~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy 311 (377)
T PF03097_consen 240 LAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKCSKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY 311 (377)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCHSCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 47777788888888888888777776642 21 133555566666666666665554444
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.59 E-value=3e+02 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 487 RRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 487 ~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
|+|+|..++|+..+|.+.++...+-.|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 567777777777777777776666555
No 442
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=48.38 E-value=1.7e+02 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
+-|+|+.|..+...+++-+|+..|+.|...
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 336677777777778888999888888753
No 443
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.68 E-value=13 Score=37.18 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=54.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.+...++.+.|..|+..-..+++..+. ....|+.++..|+.+.++++|+++...+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s---------------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERS---------------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccChh---------------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 455666777777777766666662221 23348899999999999999999999999999988655
Q ss_pred HHHHHHHHHhcC
Q 008689 485 LYRRAQAYIQMA 496 (557)
Q Consensus 485 ~~~~g~a~~~lg 496 (557)
.-.+..+-....
T Consensus 346 ~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 346 EEELENVRQKKK 357 (372)
T ss_pred HHHHHHhhhHHH
Confidence 444444443333
No 444
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.57 E-value=1.2e+02 Score=22.94 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCHHHHHHHH-------HHHHHhCCCC
Q 008689 487 RRAQAYIQMADLDLAEFDI-------KKALEIDPDN 515 (557)
Q Consensus 487 ~~g~a~~~lg~~~~A~~~~-------~~al~l~p~n 515 (557)
+.|.-.-..|+|++|+..| .++++.+|+.
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 3333344444554444444 4445556643
No 445
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.80 E-value=44 Score=28.26 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.+++-..-....+.|..+...|++.+|+.+|-+|+.+++.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555566677889999999999999999999999998764
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.28 E-value=2.3e+02 Score=30.95 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~ 428 (557)
..+++.|....+++++..|.++|.+|.++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34566666666666666666666666554
No 447
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.21 E-value=80 Score=30.39 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|+.|+.+....-..+ ..+++.+.+|.+..|+. +++.++|+..+++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt-------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5588999999998754322111 25677788899888776 4788888887777653
No 448
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=45.70 E-value=3.2e+02 Score=29.32 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=71.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--------------ChH---HHHHHHHHHHHHHhhHHH-----
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDE---EKKQAKALKVACNLNNAA----- 456 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~--------------~~~---~~~~~~~~~~~~~~nla~----- 456 (557)
+..-++.+. +|.+.+-+.|+..|.+|+.-.-..... .++ -....+.+...+-.+++.
T Consensus 132 vv~~ReLa~-~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 132 VVIGRELAD-KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHH-HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 333444444 345588889999999988654321100 010 011122222222333333
Q ss_pred ---HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhCC
Q 008689 457 ---CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--------------------MADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 457 ---~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~--------------------lg~~~~A~~~~~~al~l~p 513 (557)
-|....+|.+|++.....|+.|..+.+|.-++-.-+.. -.++.+|+.+|++.+.++.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 34446689999999999999999988887665554444 4567889999999988876
Q ss_pred CC
Q 008689 514 DN 515 (557)
Q Consensus 514 ~n 515 (557)
.|
T Consensus 291 Gn 292 (711)
T COG1747 291 GN 292 (711)
T ss_pred Cc
Confidence 65
No 449
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=45.18 E-value=47 Score=20.91 Aligned_cols=29 Identities=28% Similarity=0.138 Sum_probs=17.4
Q ss_pred HHHHHHH--HHHHhcC-----CHHHHHHHHHHHHHh
Q 008689 483 KALYRRA--QAYIQMA-----DLDLAEFDIKKALEI 511 (557)
Q Consensus 483 ka~~~~g--~a~~~lg-----~~~~A~~~~~~al~l 511 (557)
.|.|++| .+|..-. ++++|+.+|++|-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5667777 4334332 367777777777654
No 450
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.94 E-value=2.6e+02 Score=25.67 Aligned_cols=47 Identities=30% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHhc------------------------CCHHHHHHHHHHHHHhC
Q 008689 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM------------------------ADLDLAEFDIKKALEID 512 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l------------------------g~~~~A~~~~~~al~l~ 512 (557)
..+|++++.++..++ +..|-|.++.-|+.- .+.+.|.+.-.+|-+++
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 677888888888764 455666665555543 55677777777776664
No 451
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.55 E-value=2.6e+02 Score=27.66 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHH-HHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK-QAEKLCTK 473 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~-~A~~~~~~ 473 (557)
.+..+......-..++..|+|..|+..+.+..+.+.....+. |..++. .++.++. ......+.
T Consensus 123 ~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~-------------c~~~L~---~~L~e~~~~i~~~ld~ 186 (291)
T PF10475_consen 123 QIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS-------------CVRHLS---SQLQETLELIEEQLDS 186 (291)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch-------------HHHHHh---HHHHHHHHHHHHHHHH
Confidence 344555666677888899999999999999888775433221 111111 1111111 11111111
Q ss_pred HHcc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 474 VLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 474 al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+|.- ..-++..|-..=.||..||+...+.+-+....
T Consensus 187 ~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f 224 (291)
T PF10475_consen 187 DLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHF 224 (291)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1110 01345668888888999998877776555543
No 452
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=42.84 E-value=93 Score=23.82 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=34.1
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
-..++.++.|..+.+.|..++++|++..|+.++.=|--++.
T Consensus 26 ~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 26 DAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999877665543
No 453
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.73 E-value=3.4e+02 Score=26.69 Aligned_cols=110 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHH-HHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA-ACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
-+.+..++-..+|..|+..++++++.+..+....+ ......+++.. ++-+| ++...+++|.+++.+.-+-... |.+
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~s-LcvvGIQALAEmnrWreVLsWvlqyYq~-pEk 115 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCS-LCVVGIQALAEMNRWREVLSWVLQYYQV-PEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhh-hhhhhHHHHHHHhhHHHHHHHHHHHhcC-ccc
Confidence 34455667789999999999999998855432211 11111222222 22333 5778899999998887666553 333
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 482 --VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 482 --~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
+|.+----..|.+.++.....+ .-.+---+|+|.
T Consensus 116 lPpkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq 151 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQ 151 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccC
Confidence 3443333445667777655544 334444567764
No 454
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=42.72 E-value=56 Score=20.03 Aligned_cols=29 Identities=38% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 008689 483 KALYRRAQAYIQM----ADLDLAEFDIKKALEI 511 (557)
Q Consensus 483 ka~~~~g~a~~~l----g~~~~A~~~~~~al~l 511 (557)
.|.+++|..|..- .+..+|+.+|++|-+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3556666665532 2566666666666543
No 455
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=42.61 E-value=87 Score=24.20 Aligned_cols=55 Identities=16% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
..+..+..++=|+.++.-.|.-.|+|..+...++...+++++.. +.|.+.|+-+.
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~----~~Ye~~yGPLt 57 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLK----KEYEKRYGPLT 57 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH----HHHHHHhCCCc
Confidence 34556667778889999999999999998888888766665554 45666666554
No 456
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=41.56 E-value=1.1e+02 Score=31.41 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
-|+|+.|......++|-+|+..|+.|+.
T Consensus 238 ~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 238 AAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3667777777777788888888887776
No 457
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.38 E-value=1e+02 Score=31.27 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.+...+..+...|+.++..++|..|...|..|..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999998753
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.09 E-value=1.7e+02 Score=26.81 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=24.2
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
....++++.|.|++|.+.+++... +|++.+-
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 345677888888888888888888 7777665
No 459
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.63 E-value=3.3e+02 Score=26.43 Aligned_cols=95 Identities=14% Similarity=-0.028 Sum_probs=51.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhHHHHHHhhh--------CHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLK--------DYKQAEK 469 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~--------~~~~A~~ 469 (557)
..-+.+=+..+++.+++..|...-.-.++.+...... +++... +++.+..... =-+.|+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~-----------rl~~l~~~~~~~~p~r~~fi~~ai~ 78 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIA-----------RLIELISLFPPEEPERKKFIKAAIK 78 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHH-----------HHHHHHHHS-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH-----------HHHHHHHhCCCCcchHHHHHHHHHH
Confidence 3444555667778888888887776666665543322 222112 2222222221 1334444
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~ 505 (557)
+. +.-...-.++.-+...|..|.+-++|.+|+.+|
T Consensus 79 WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 79 WS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44 222222346788888999999999999888877
No 460
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.62 E-value=1.1e+02 Score=23.41 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHH
Q 008689 496 ADLDLAEFDIKKALE 510 (557)
Q Consensus 496 g~~~~A~~~~~~al~ 510 (557)
|+|++|...|..++.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555553
No 461
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.17 E-value=3.8e+02 Score=35.74 Aligned_cols=88 Identities=11% Similarity=-0.061 Sum_probs=64.8
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc----CC----HHHHHHHHHHHHHhCCCCHH
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----AD----LDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----g~----~~~A~~~~~~al~l~p~n~~ 517 (557)
..+..+.-.|..+.+++++++|=..+..|+.++..-.|||+..|.-+.++ .. -..|+.+|-+|..+.-+. .
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s-k 2888 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS-K 2888 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch-h
Confidence 44555666788899999999999999999999998899999888765543 11 246778788887776443 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008689 518 VKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 518 ~~~~l~~l~~~~~~~~~ 534 (557)
+++.+.++.-.+.-.+.
T Consensus 2889 aRk~iakvLwLls~dda 2905 (3550)
T KOG0889|consen 2889 ARKLIAKVLWLLSFDDS 2905 (3550)
T ss_pred hHHHHHHHHHHHHhccc
Confidence 67777777666654443
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.51 E-value=57 Score=19.63 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=18.3
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|+.+..++.+.++++.|+..++.-.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666777777787777777766543
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.70 E-value=55 Score=19.57 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=16.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|+.+-.+|.+.+++++|+..+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666777777766666543
No 464
>PF13041 PPR_2: PPR repeat family
Probab=38.60 E-value=1.2e+02 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=16.7
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
|+-+-.+|.+.+++++|.+.+++..+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 455556666666666666666666543
No 465
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=38.17 E-value=3.8e+02 Score=27.46 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|+|+.|..+...++|-+|+..|+.|..
T Consensus 254 A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 254 AHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567777777777788888888877765
No 466
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.69 E-value=87 Score=28.40 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH-HccC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV-LDLD 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a-l~~~ 478 (557)
......|..+.++|+-..|+..|..+-..-+.... .+-...+.-|......+.|+....-.+.. -.-+
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-----------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n 163 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-----------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGN 163 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-----------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCC
Confidence 44566778888999999999999987654321111 11222334455666778888876655542 1223
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|-...|---+|.+-.+-|+|..|...|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44455555677888888999999999998776
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.07 E-value=73 Score=24.47 Aligned_cols=24 Identities=29% Similarity=0.052 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
.++|.-+-..|+|++|+.+|..|+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 333344444455555555554444
No 468
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=36.99 E-value=84 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 487 ~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
.+|..++..|++++|..+|-+|+.+.|+-.++...++
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5688888888888888888888888887654444433
No 469
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=36.80 E-value=1.2e+02 Score=25.13 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=36.9
Q ss_pred ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
.+..+...-+..|..+..+|..+++.|+.+.|--.|.+.+.++.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34556777789999999999999999999999999999998873
No 470
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.67 E-value=72 Score=31.63 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=49.5
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH--
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA-- 484 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka-- 484 (557)
+-.-+.|.|..--+.|.+++..-|.+...+- +--+.-+.-..+++.|...+.++|+++|.+++.
T Consensus 115 ~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI--------------~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 115 AYVIKKKMYGEMKNIFAECLTKHPLNVDLWI--------------YCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCceeee--------------eeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3344456777888889999988777654420 012233455678999999999999999999664
Q ss_pred -HHHHHHHHH
Q 008689 485 -LYRRAQAYI 493 (557)
Q Consensus 485 -~~~~g~a~~ 493 (557)
|||+-..|.
T Consensus 181 eyfr~El~yi 190 (435)
T COG5191 181 EYFRMELMYI 190 (435)
T ss_pred HHHHHHHHHH
Confidence 455544444
No 471
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.25 E-value=1.6e+02 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.033 Sum_probs=42.0
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
....-+|+-..+.++..+|.|....+.+.+.|..+|-...|.+.|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44577888899999999999999999999999999999999988854
No 472
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.95 E-value=1e+02 Score=27.02 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.2
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhh
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEY 431 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~ 431 (557)
+.+++...-......|..+...| ++.+|+.+|-+||.+++.
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45566667778889999999999 999999999999998874
No 473
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.87 E-value=2e+02 Score=21.94 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhCCC
Q 008689 501 AEFDIKKALEIDPD 514 (557)
Q Consensus 501 A~~~~~~al~l~p~ 514 (557)
|++.|..+++.+++
T Consensus 32 ale~~~~~~k~e~~ 45 (75)
T cd02684 32 ALQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHHhhCCC
Confidence 33444444455544
No 474
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=35.58 E-value=4.9e+02 Score=30.94 Aligned_cols=21 Identities=24% Similarity=0.116 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008689 489 AQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 489 g~a~~~lg~~~~A~~~~~~al 509 (557)
|.+|...|+.++|++.|+.+.
T Consensus 959 al~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhc
Confidence 566777777777777776543
No 475
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=35.53 E-value=2.1e+02 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 497 DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 497 ~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
+...+++...++++.+|+|+.+..+++....+..-.+..+
T Consensus 22 ~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQ 61 (80)
T PRK15326 22 NLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQ 61 (80)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556667788888877777766655554444443
No 476
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=35.29 E-value=3.5e+02 Score=27.75 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-C-------
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-S------- 479 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p------- 479 (557)
...++.....+.+...++-..+-++........++.-.+. +-+-+...|+++++++.|-...+..-..+ |
T Consensus 139 s~~~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~--iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~ 216 (413)
T COG5600 139 SELNQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYY--IANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQK 216 (413)
T ss_pred chhhHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHH--HHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhh
Confidence 3334455566666666666655444322111111111111 12335678999999887665444321111 1
Q ss_pred -CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 480 -RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 480 -~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
+-+-..|-+|.+|+.+.++-+|...++.|+..-|.
T Consensus 217 sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 217 SQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred cceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 22456789999999999999999999999988876
No 477
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.34 E-value=42 Score=35.44 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=35.0
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+++|+.+.|.+.+++ -++...|-++|.+.+..|+++-|.++|.++-.
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 457777777665442 24667899999999999999999999988653
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.97 E-value=1.6e+02 Score=22.80 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHccCC
Q 008689 463 DYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p 479 (557)
.|+.|..+.++||..+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 46677777777776654
No 479
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.35 E-value=3.8e+02 Score=24.48 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=58.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC--
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-- 479 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-- 479 (557)
....+..+-+.+.-++|+..|...-+-- ...+ .+...+..|.+....|+-..|+.++..+-.-.+
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg--~g~Y-----------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTG--YGSY-----------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcC--CCcc-----------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3444555666778888888887644321 1112 122355678888888999999999998765442
Q ss_pred C--ChHHHHHHHHHHHhcCCHHHHHHH
Q 008689 480 R--NVKALYRRAQAYIQMADLDLAEFD 504 (557)
Q Consensus 480 ~--~~ka~~~~g~a~~~lg~~~~A~~~ 504 (557)
. ..-|-.|-|.++...|.|+.-..-
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~sr 154 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSR 154 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHH
Confidence 2 234667778888888888765433
No 480
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=4.8e+02 Score=27.14 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=66.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.|.-+.-.|....-+.+|..|.+++.+|++.-|...... .+..+.-.+..+.+-+|++.+-.-.|+..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alG---------f~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALG---------FRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhh---------HHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 5677788888888889999999999999999887644332 2222233334445556666554444433222
Q ss_pred cCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 477 LDSRNVKALYRRAQA--YIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a--~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.....||.+.+| ...+.+|.+-++-|+.-+..+-.-
T Consensus 316 ---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 316 ---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 134456666554 344566677777777666665543
No 481
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=32.70 E-value=1.2e+02 Score=32.83 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=42.2
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.-..|..|...|.+. .+ +-.-+|.-.|.|+++.++|..|+.-|++|+++-.++
T Consensus 568 e~ErYqlaV~mckKc-~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 568 EAERYQLAVEMCKKC-GI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHhhc-CC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 345688888888875 22 345678888999999999999999999999986554
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.54 E-value=3.1e+02 Score=23.22 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc--cCCCChHHHHHHHH
Q 008689 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--LDSRNVKALYRRAQ 490 (557)
Q Consensus 413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--~~p~~~ka~~~~g~ 490 (557)
+.-..-...+.++++.+..+..+.++. + |+.+-.-|.++-. .+...+..... +--..+.-|-..|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~-------R---ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDE-------R---YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-H-------H---HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCH-------H---HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 344444567777787776554432211 1 4444445555444 67777777655 44556777778899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008689 491 AYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 491 a~~~lg~~~~A~~~~~~al 509 (557)
.+...|++.+|.+.|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 483
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.53 E-value=4.4e+02 Score=25.02 Aligned_cols=64 Identities=13% Similarity=-0.043 Sum_probs=47.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
....+++.+..++|+..-..-++..|.+... ..-+=..+.-.|+|++|...|+-+-.++|+..+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3456788888999998888877777765543 122334455689999999999999999998743
No 484
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.83 E-value=1.2e+02 Score=26.16 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=35.9
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.+.++....-..-.+.|..++.+|+++++..++-.|+.+++.
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 456666667778889999999999999999999999998764
No 485
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.76 E-value=80 Score=31.97 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH-c--
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL-D-- 476 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al-~-- 476 (557)
..++..++...+.+....-++.-.+|+........ ....++--+.+|.++.++|..++.+.+--+ +
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~ 171 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEIC 171 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHh
Confidence 44556666677777777777777777766543321 123345667788888998887766554421 1
Q ss_pred -cCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 477 -LDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 477 -~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-+|.. .-.+|.-|..+..+++|+.|+-+|..++-.
T Consensus 172 ~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 172 KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 13332 234556788999999999999999887743
No 486
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.31 E-value=2.3e+02 Score=28.35 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
++..++..|..++..|+|..|-.+.-.-.. .++++..|++-+-.+-.-+.+|+-|++++.+.-+.
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455567888999999999988766544332 24456778887777777888999999999887765
No 487
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=4e+02 Score=26.29 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=68.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc-cCCCCh
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNV 482 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-~~p~~~ 482 (557)
..|-.+....+|.-|..+|-+|++-+..... ..+.+..++ |.-|+...+...+--.|+-....+++ ++....
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~----d~kAc~sLk---YmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I 283 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKM----DVKACVSLK---YMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMI 283 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccc----hHHHHHHHH---HHHHHHHHHhhHHHHHHHHccchhHhhhhhhhH
Confidence 4455666778899999999888875433222 133344444 44455554444443344444444555 556667
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQ--MADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 483 ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
.|+...|.+|-. +.+|+.|++.|..-+.-||- ++..++-+
T Consensus 284 ~am~avaea~~NRsL~df~~aL~qY~~el~~D~~---iRsHl~~L 325 (421)
T COG5159 284 RAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF---IRSHLQYL 325 (421)
T ss_pred HHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH---HHHHHHHH
Confidence 888888888865 56888898888877665543 44444444
No 488
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=30.45 E-value=2.3e+02 Score=30.49 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=48.5
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+...|.-.+|+.+...|...++.+-... ...--..++.+|...+.||...+.+.+|...+.++|.
T Consensus 159 r~Lm~~G~s~~vle~L~wa~~cmEssv~L~---t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 159 RHLMTAGHSAKVLEYLLWASICMESSVPLL---TVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHhcchhh---hcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344456777888888777766655432210 1122356899999999999999999999999999875
No 489
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.35 E-value=2.4e+02 Score=30.98 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
.+...++|.+|...+++.-++-| ..|+..|+=+....+|+||.+.|.+|=+
T Consensus 782 lHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred heeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 34445677887777766655544 4688888989999999999999988743
No 490
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=30.20 E-value=3e+02 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
-|+|+.|.++...++|-+|+..|+.|.+
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 3556666666666777777777766654
No 491
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=1.7e+02 Score=30.19 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
....|-...++|..+-..+++++|+..|+++|.++...
T Consensus 18 ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~G 55 (560)
T KOG2709|consen 18 AYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEG 55 (560)
T ss_pred HHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhc
Confidence 34556777889999999999999999999999998763
No 492
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.91 E-value=1.9e+02 Score=25.66 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHH------------------------HHHHHHHHHHHhh
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK------------------------KQAKALKVACNLN 453 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~n 453 (557)
.|......+......|+.++|.....+|...+......+..-. .-...........
T Consensus 1 ~A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~ 80 (155)
T PF10938_consen 1 RAMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIK 80 (155)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHH
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHc--------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLD--------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~--------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
.+.-+++.|+.+.|++..+.+-. +-=........+|..++..|+|.+|...++.|+.
T Consensus 81 ~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 81 TANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.83 E-value=5.2e+02 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKY 428 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~ 428 (557)
...|..+-+.|+|+.|+++|-.|-.+
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~ 735 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCL 735 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhH
Confidence 35688888889999999988776543
No 494
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.82 E-value=5.9e+02 Score=25.66 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=35.6
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
-.||.|-.|+|+..+|++.++...+--|-. ...+-++-.+++.+.-|.+....+-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999999887655521 12233445555555544444433333
No 495
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.50 E-value=6.5e+02 Score=25.98 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=44.0
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhc--CCHHHHHHHHHHHHHh
Q 008689 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQM--ADLDLAEFDIKKALEI 511 (557)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l--g~~~~A~~~~~~al~l 511 (557)
..++.-.+...+|..|...++..+..-|.+ ...+..++.+|..- -+|.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345555667888999999999988752333 34677777777764 4678999999988765
No 496
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=29.25 E-value=3.3e+02 Score=25.05 Aligned_cols=54 Identities=28% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALE 510 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----g~~~~A~~~~~~al~ 510 (557)
+..+.-+++.+.|+++.-+|.+++ ++.|--+.++.|..- .+.++|..+-++|++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 344455677888888888888875 556666666654321 134455555444443
No 497
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.46 E-value=3.6e+02 Score=31.58 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=49.7
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-------a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
|+-.|.+|.++++|++-++.+..|++.-|+++. .-||+=.+.... -..|....--|+.+-|.+...
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence 778899999999999999999999999888855 334444444332 245777777788888886533
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=27.16 E-value=1.3e+02 Score=24.78 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (557)
+.+.+.....+|-..+-.|+|..|.+...++.+..+..... |+--|.+-..+|+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~---------------~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLN---------------YLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH---------------HHHHHHHHHHcCC
No 499
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.10 E-value=1.2e+02 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008689 497 DLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 497 ~~~~A~~~~~~al~l~p~ 514 (557)
+++.|+..|++.+...|+
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 344555555555555544
No 500
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.82 E-value=5.1e+02 Score=28.38 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
..+.+....+.-+.-......+++.+|+.+...++.+.|-++|++.+..+|+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 33333333333333333344444455555555555555555555555554443
Done!