Query 008689
Match_columns 557
No_of_seqs 507 out of 4398
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jxv_A 70 kDa peptidyl-prolyl 100.0 4.7E-66 1.6E-70 525.7 28.6 355 27-383 1-355 (356)
2 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 3.9E-57 1.3E-61 479.1 46.7 385 151-551 29-420 (457)
3 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 3.4E-43 1.2E-47 372.1 25.9 375 35-504 29-407 (457)
4 1q1c_A FK506-binding protein 4 100.0 3.3E-40 1.1E-44 322.1 28.2 223 35-264 49-276 (280)
5 1p5q_A FKBP52, FK506-binding p 100.0 2.4E-37 8.1E-42 314.2 38.9 276 263-548 18-296 (336)
6 2if4_A ATFKBP42; FKBP-like, al 100.0 5E-38 1.7E-42 319.4 24.8 277 269-549 48-331 (338)
7 3jxv_A 70 kDa peptidyl-prolyl 100.0 3.6E-37 1.2E-41 313.0 27.4 220 35-261 125-354 (356)
8 1q1c_A FK506-binding protein 4 100.0 1.9E-36 6.5E-41 295.6 29.4 223 151-389 49-280 (280)
9 2if4_A ATFKBP42; FKBP-like, al 99.9 2.7E-26 9.1E-31 232.9 14.8 298 19-517 31-334 (338)
10 1yat_A FK506 binding protein; 99.9 6.4E-24 2.2E-28 178.9 15.3 110 34-144 3-113 (113)
11 3o5e_A Peptidyl-prolyl CIS-tra 99.9 7.5E-24 2.6E-28 185.8 15.0 111 35-145 33-143 (144)
12 3kz7_A FK506-binding protein 3 99.9 9.6E-24 3.3E-28 179.6 15.1 109 35-143 2-118 (119)
13 3o5q_A Peptidyl-prolyl CIS-tra 99.9 6.2E-24 2.1E-28 182.8 13.9 111 35-145 17-127 (128)
14 1r9h_A FKB-6, FK506 binding pr 99.9 8.4E-24 2.9E-28 183.5 13.9 112 35-146 12-123 (135)
15 2y78_A Peptidyl-prolyl CIS-tra 99.9 2E-23 6.9E-28 180.2 15.5 110 33-143 24-133 (133)
16 3b7x_A FK506-binding protein 6 99.9 3E-24 1E-28 186.1 9.5 125 19-144 6-133 (134)
17 2f4e_A ATFKBP42; FKBP-like, al 99.9 3.4E-23 1.2E-27 188.2 16.6 130 18-148 30-163 (180)
18 2ppn_A FK506-binding protein 1 99.9 2E-23 6.9E-28 174.1 13.2 106 38-143 1-106 (107)
19 2lgo_A FKBP; infectious diseas 99.9 2.4E-23 8.1E-28 179.1 13.3 110 33-143 18-130 (130)
20 4dip_A Peptidyl-prolyl CIS-tra 99.9 1E-22 3.5E-27 174.7 14.7 111 33-145 8-123 (125)
21 1jvw_A Macrophage infectivity 99.9 5.6E-23 1.9E-27 183.6 12.4 112 32-146 32-144 (167)
22 2lkn_A AH receptor-interacting 99.9 3.1E-23 1.1E-27 183.3 10.3 114 34-148 7-161 (165)
23 3oe2_A Peptidyl-prolyl CIS-tra 99.9 1.5E-22 5E-27 187.5 14.5 106 33-144 113-218 (219)
24 3uf8_A Ubiquitin-like protein 99.9 2E-22 7E-27 187.4 15.1 111 32-143 99-209 (209)
25 2vn1_A 70 kDa peptidylprolyl i 99.9 3.7E-22 1.3E-26 172.1 15.2 112 33-145 11-127 (129)
26 3rkv_A Putative peptidylprolyl 99.9 2.6E-22 9E-27 180.6 14.1 154 392-545 4-161 (162)
27 1u79_A FKBP-type peptidyl-prol 99.9 1.1E-22 3.6E-27 175.3 10.6 111 32-143 7-128 (129)
28 2jwx_A FKBP38NTD, FK506-bindin 99.9 4.4E-22 1.5E-26 175.7 14.7 109 33-146 38-150 (157)
29 2awg_A 38 kDa FK-506 binding p 99.9 5.3E-22 1.8E-26 168.3 14.5 108 33-144 8-117 (118)
30 1fd9_A Protein (macrophage inf 99.9 3.1E-22 1.1E-26 185.7 14.1 110 33-145 102-211 (213)
31 1p5q_A FKBP52, FK506-binding p 99.9 4.7E-22 1.6E-26 201.4 14.3 271 147-511 19-294 (336)
32 1q6h_A FKBP-type peptidyl-prol 99.9 1.5E-21 5E-26 182.4 15.0 108 33-144 117-224 (224)
33 2d9f_A FK506-binding protein 8 99.9 1E-21 3.6E-26 170.3 12.9 113 32-148 11-126 (135)
34 2pbc_A FK506-binding protein 2 99.8 1.1E-20 3.7E-25 156.0 12.0 96 51-146 4-99 (102)
35 1r9h_A FKB-6, FK506 binding pr 99.8 2.6E-20 8.8E-25 161.5 13.3 118 151-274 12-135 (135)
36 2fbn_A 70 kDa peptidylprolyl i 99.8 2.6E-19 8.8E-24 166.6 20.3 178 371-548 10-188 (198)
37 3o5e_A Peptidyl-prolyl CIS-tra 99.8 7.5E-20 2.6E-24 160.3 15.2 115 263-382 26-142 (144)
38 2hr2_A Hypothetical protein; a 99.8 4.6E-20 1.6E-24 162.6 11.8 143 390-535 2-155 (159)
39 3kz7_A FK506-binding protein 3 99.8 8E-20 2.7E-24 155.3 12.9 105 152-260 3-118 (119)
40 4gco_A Protein STI-1; structur 99.8 1.7E-19 5.7E-24 155.3 14.4 115 396-525 10-124 (126)
41 2f4e_A ATFKBP42; FKBP-like, al 99.8 2E-19 6.8E-24 163.3 15.4 128 269-400 48-180 (180)
42 3o5q_A Peptidyl-prolyl CIS-tra 99.8 2.6E-19 8.8E-24 153.8 14.2 110 268-382 17-126 (128)
43 2lkn_A AH receptor-interacting 99.8 4.5E-20 1.6E-24 163.1 9.5 86 268-355 8-96 (165)
44 2ppn_A FK506-binding protein 1 99.8 4.5E-19 1.5E-23 147.7 12.9 102 154-260 1-106 (107)
45 2jwx_A FKBP38NTD, FK506-bindin 99.8 3.4E-19 1.1E-23 157.3 12.6 109 150-263 40-150 (157)
46 2awg_A 38 kDa FK-506 binding p 99.8 5.5E-19 1.9E-23 149.7 13.1 108 149-261 9-117 (118)
47 1yat_A FK506 binding protein; 99.8 6.7E-19 2.3E-23 148.0 13.2 105 151-260 4-112 (113)
48 2lgo_A FKBP; infectious diseas 99.8 1.5E-18 5.1E-23 149.1 13.6 105 151-260 20-130 (130)
49 4dip_A Peptidyl-prolyl CIS-tra 99.8 1.4E-18 4.8E-23 148.8 12.9 109 148-262 7-123 (125)
50 2y78_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.6E-23 149.9 12.7 105 150-260 25-133 (133)
51 3b7x_A FK506-binding protein 6 99.8 6.8E-19 2.3E-23 152.3 10.5 115 262-382 18-133 (134)
52 2vn1_A 70 kDa peptidylprolyl i 99.8 3.7E-18 1.3E-22 147.0 15.1 115 264-383 10-127 (129)
53 1ihg_A Cyclophilin 40; ppiase 99.8 4.2E-18 1.4E-22 174.5 17.9 155 391-545 215-370 (370)
54 3oe2_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5E-23 160.7 12.6 104 150-261 114-218 (219)
55 2d9f_A FK506-binding protein 8 99.8 1.1E-18 3.8E-23 151.2 10.1 110 149-263 13-124 (135)
56 4dt4_A FKBP-type 16 kDa peptid 99.8 8.2E-19 2.8E-23 155.9 7.4 131 52-192 24-158 (169)
57 2kr7_A FKBP-type peptidyl-prol 99.8 4.4E-18 1.5E-22 149.7 11.9 131 51-192 5-139 (151)
58 3uf8_A Ubiquitin-like protein 99.7 1.2E-17 4.2E-22 155.2 14.8 107 148-260 99-209 (209)
59 1jvw_A Macrophage infectivity 99.7 2E-17 6.8E-22 147.6 14.8 121 268-397 35-155 (167)
60 3pr9_A FKBP-type peptidyl-prol 99.7 9.9E-19 3.4E-23 153.9 5.9 130 53-193 2-144 (157)
61 1u79_A FKBP-type peptidyl-prol 99.7 4.9E-18 1.7E-22 146.0 9.8 110 150-260 9-128 (129)
62 3prb_A FKBP-type peptidyl-prol 99.7 1.4E-18 4.9E-23 161.9 6.5 168 53-231 2-189 (231)
63 1ix5_A FKBP; ppiase, isomerase 99.7 6.1E-19 2.1E-23 155.1 3.0 131 52-192 1-144 (151)
64 1fd9_A Protein (macrophage inf 99.7 2.4E-17 8.3E-22 152.8 12.7 104 150-261 103-210 (213)
65 2kfw_A FKBP-type peptidyl-prol 99.7 7.7E-18 2.6E-22 153.5 9.1 130 53-192 3-134 (196)
66 2pbc_A FK506-binding protein 2 99.7 2E-17 7E-22 136.2 10.2 91 167-262 4-98 (102)
67 2k8i_A SLYD, peptidyl-prolyl C 99.7 3.3E-17 1.1E-21 146.5 11.3 133 53-195 3-137 (171)
68 4gcn_A Protein STI-1; structur 99.7 8.5E-17 2.9E-21 138.4 12.0 115 395-525 4-125 (127)
69 1q6h_A FKBP-type peptidyl-prol 99.7 1.3E-16 4.3E-21 149.0 12.7 101 151-260 119-223 (224)
70 3upv_A Heat shock protein STI1 99.7 2.4E-16 8.1E-21 134.8 12.7 118 397-529 2-125 (126)
71 3cgm_A SLYD, peptidyl-prolyl C 99.6 1.5E-16 5E-21 140.5 7.3 127 53-194 3-132 (158)
72 1hxv_A Trigger factor; FKBP fo 99.6 3.6E-16 1.2E-20 130.3 7.5 87 48-143 26-112 (113)
73 3sz7_A HSC70 cochaperone (SGT) 99.6 2.5E-15 8.4E-20 135.0 13.4 122 397-533 9-132 (164)
74 3gyz_A Chaperone protein IPGC; 99.6 4.8E-15 1.6E-19 131.4 13.8 106 396-516 33-138 (151)
75 2xcb_A PCRH, regulatory protei 99.6 1.4E-14 4.8E-19 126.8 13.5 123 397-534 16-138 (142)
76 2vgx_A Chaperone SYCD; alterna 99.6 1E-14 3.5E-19 128.9 12.7 119 397-530 19-137 (148)
77 4ga2_A E3 SUMO-protein ligase 99.6 1.1E-14 3.9E-19 128.8 11.8 115 397-526 29-144 (150)
78 3q49_B STIP1 homology and U bo 99.6 1.3E-14 4.6E-19 125.3 11.5 121 399-534 9-134 (137)
79 4ga2_A E3 SUMO-protein ligase 99.5 1.3E-14 4.5E-19 128.4 9.4 115 405-534 3-117 (150)
80 3urz_A Uncharacterized protein 99.5 2.7E-13 9.4E-18 126.8 16.1 132 399-530 4-136 (208)
81 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-13 3.9E-18 152.9 15.3 124 396-534 6-129 (723)
82 1a17_A Serine/threonine protei 99.5 5.8E-13 2E-17 118.5 17.1 123 392-529 6-128 (166)
83 1elw_A TPR1-domain of HOP; HOP 99.5 2.2E-13 7.5E-18 113.4 13.0 115 398-527 3-117 (118)
84 2vyi_A SGTA protein; chaperone 99.5 7.3E-13 2.5E-17 112.3 14.2 122 393-529 6-127 (131)
85 1hxv_A Trigger factor; FKBP fo 99.5 1.5E-13 5.1E-18 114.4 9.3 82 167-260 28-112 (113)
86 2dba_A Smooth muscle cell asso 99.5 4.1E-13 1.4E-17 117.0 12.2 117 398-526 27-143 (148)
87 2xev_A YBGF; tetratricopeptide 99.5 7.2E-13 2.5E-17 112.9 13.3 116 400-527 3-121 (129)
88 2lni_A Stress-induced-phosphop 99.5 4.1E-13 1.4E-17 114.6 11.5 116 398-528 15-130 (133)
89 1elr_A TPR2A-domain of HOP; HO 99.4 6.6E-13 2.2E-17 112.7 12.3 119 398-532 3-128 (131)
90 4i17_A Hypothetical protein; T 99.4 9.7E-13 3.3E-17 124.4 14.5 129 400-544 8-144 (228)
91 1hxi_A PEX5, peroxisome target 99.4 2.4E-13 8.2E-18 115.6 9.2 102 401-517 19-120 (121)
92 4gyw_A UDP-N-acetylglucosamine 99.4 5.3E-13 1.8E-17 147.6 13.3 123 399-536 43-165 (723)
93 2pl2_A Hypothetical conserved 99.4 5.2E-13 1.8E-17 125.8 11.4 127 402-545 42-179 (217)
94 2kr7_A FKBP-type peptidyl-prol 99.4 7.3E-13 2.5E-17 116.3 10.8 81 167-260 5-89 (151)
95 4dt4_A FKBP-type 16 kDa peptid 99.4 3.3E-13 1.1E-17 119.7 8.5 81 168-261 24-108 (169)
96 2c2l_A CHIP, carboxy terminus 99.4 1.2E-12 4.1E-17 128.6 12.7 102 399-515 4-105 (281)
97 1zu2_A Mitochondrial import re 99.4 4.5E-13 1.5E-17 117.7 8.4 105 410-529 13-138 (158)
98 2h6f_A Protein farnesyltransfe 99.4 1E-12 3.5E-17 134.8 11.6 79 450-528 168-246 (382)
99 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-12 1.5E-16 115.4 14.5 146 399-545 5-169 (184)
100 3pr9_A FKBP-type peptidyl-prol 99.4 3.6E-13 1.2E-17 118.4 6.8 79 169-261 2-97 (157)
101 2pl2_A Hypothetical conserved 99.4 4.3E-12 1.5E-16 119.4 14.7 108 420-536 98-205 (217)
102 2h6f_A Protein farnesyltransfe 99.4 2.7E-12 9.1E-17 131.6 12.6 131 398-544 96-227 (382)
103 2kfw_A FKBP-type peptidyl-prol 99.4 1.3E-12 4.4E-17 119.0 8.6 124 169-306 3-131 (196)
104 3k9i_A BH0479 protein; putativ 99.4 1E-12 3.5E-17 110.7 7.2 97 411-522 2-101 (117)
105 1wao_1 Serine/threonine protei 99.3 1.6E-12 5.4E-17 137.6 10.2 119 396-529 3-121 (477)
106 1na0_A Designed protein CTPR3; 99.3 1.8E-11 6E-16 102.7 14.8 114 399-527 9-122 (125)
107 1ix5_A FKBP; ppiase, isomerase 99.3 2.4E-13 8.2E-18 119.4 3.1 80 169-261 2-98 (151)
108 2k8i_A SLYD, peptidyl-prolyl C 99.3 4.2E-11 1.5E-15 106.9 16.3 80 169-261 3-85 (171)
109 3vtx_A MAMA; tetratricopeptide 99.3 2.2E-11 7.5E-16 110.7 14.9 118 399-516 39-175 (184)
110 3prb_A FKBP-type peptidyl-prol 99.3 2E-12 7E-17 120.4 7.0 67 169-236 2-85 (231)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.4E-11 4.6E-16 114.8 12.6 130 397-545 4-149 (213)
112 3urz_A Uncharacterized protein 99.3 1.7E-11 5.8E-16 114.5 13.2 107 404-526 59-200 (208)
113 3gyz_A Chaperone protein IPGC; 99.3 1.5E-12 5.1E-17 115.2 5.6 97 449-546 37-133 (151)
114 4gco_A Protein STI-1; structur 99.3 1.4E-11 4.8E-16 105.3 11.5 98 447-545 12-109 (126)
115 4i17_A Hypothetical protein; T 99.3 2.6E-11 9E-16 114.4 14.0 118 400-532 43-169 (228)
116 2e2e_A Formate-dependent nitri 99.3 3E-11 1E-15 109.3 13.3 113 399-526 44-159 (177)
117 2kck_A TPR repeat; tetratricop 99.3 8.8E-12 3E-16 102.6 8.7 101 400-515 7-110 (112)
118 3cgm_A SLYD, peptidyl-prolyl C 99.3 5.5E-12 1.9E-16 111.2 7.6 78 169-261 3-80 (158)
119 1w26_A Trigger factor, TF; cha 99.3 5.6E-12 1.9E-16 130.3 8.4 100 51-158 156-255 (432)
120 3ieg_A DNAJ homolog subfamily 99.3 8.6E-11 2.9E-15 117.7 16.7 124 399-533 234-357 (359)
121 2fo7_A Synthetic consensus TPR 99.2 1E-10 3.5E-15 99.1 13.5 129 401-545 3-131 (136)
122 3uq3_A Heat shock protein STI1 99.2 5.2E-11 1.8E-15 113.6 12.4 113 398-525 138-256 (258)
123 2vsy_A XCC0866; transferase, g 99.2 5.6E-11 1.9E-15 128.6 14.1 133 398-546 22-157 (568)
124 3qky_A Outer membrane assembly 99.2 5.8E-11 2E-15 114.7 12.2 109 399-519 15-134 (261)
125 3as5_A MAMA; tetratricopeptide 99.2 2.2E-10 7.5E-15 103.0 15.2 132 399-546 42-173 (186)
126 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.6E-10 9E-15 110.0 16.6 114 397-525 41-154 (275)
127 3qky_A Outer membrane assembly 99.2 3.7E-10 1.3E-14 108.9 17.4 119 399-529 52-198 (261)
128 3uq3_A Heat shock protein STI1 99.2 2.2E-10 7.5E-15 109.2 14.9 146 399-545 79-235 (258)
129 4abn_A Tetratricopeptide repea 99.2 1.1E-10 3.7E-15 123.5 13.5 130 399-545 102-249 (474)
130 2vgx_A Chaperone SYCD; alterna 99.2 2.6E-11 8.7E-16 106.9 7.2 97 449-546 22-118 (148)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.2 9.4E-11 3.2E-15 109.0 11.6 103 399-516 37-155 (213)
132 4abn_A Tetratricopeptide repea 99.2 1.1E-10 3.7E-15 123.5 13.2 121 400-535 171-311 (474)
133 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.8E-10 1.3E-14 106.6 15.7 110 399-520 4-134 (225)
134 3u4t_A TPR repeat-containing p 99.2 1.7E-10 5.8E-15 111.4 13.3 114 402-527 40-154 (272)
135 2l6j_A TPR repeat-containing p 99.2 8.1E-12 2.8E-16 103.2 3.1 94 399-507 4-103 (111)
136 1fch_A Peroxisomal targeting s 99.2 7.1E-11 2.4E-15 119.4 10.7 131 399-545 217-358 (368)
137 3as5_A MAMA; tetratricopeptide 99.2 1.9E-10 6.5E-15 103.5 12.0 132 398-545 7-138 (186)
138 4eqf_A PEX5-related protein; a 99.2 1.3E-10 4.4E-15 117.8 12.0 123 399-536 213-347 (365)
139 1qqe_A Vesicular transport pro 99.2 2.7E-10 9.3E-15 112.2 13.9 112 398-518 116-235 (292)
140 1t11_A Trigger factor, TF; hel 99.2 1.7E-11 5.8E-16 125.0 5.3 137 9-159 116-259 (392)
141 2pzi_A Probable serine/threoni 99.2 2.9E-11 9.9E-16 133.8 7.5 74 451-525 504-577 (681)
142 2e2e_A Formate-dependent nitri 99.2 2.4E-11 8.2E-16 109.9 5.6 130 402-547 13-145 (177)
143 2pzi_A Probable serine/threoni 99.2 5.3E-11 1.8E-15 131.6 9.5 121 400-536 434-554 (681)
144 2q7f_A YRRB protein; TPR, prot 99.1 4.9E-10 1.7E-14 105.9 14.8 133 399-531 57-208 (243)
145 4gcn_A Protein STI-1; structur 99.1 2.6E-10 9E-15 97.4 11.5 97 447-544 7-110 (127)
146 1qqe_A Vesicular transport pro 99.1 4.7E-10 1.6E-14 110.5 14.8 112 397-517 75-193 (292)
147 2y4t_A DNAJ homolog subfamily 99.1 8.1E-10 2.8E-14 114.9 17.4 121 400-531 258-378 (450)
148 2q7f_A YRRB protein; TPR, prot 99.1 3.4E-10 1.2E-14 107.0 13.0 80 448-527 159-238 (243)
149 2kat_A Uncharacterized protein 99.1 2.7E-10 9.1E-15 95.1 10.8 100 417-531 3-104 (115)
150 1hxi_A PEX5, peroxisome target 99.1 8.2E-10 2.8E-14 93.5 13.8 94 451-545 20-113 (121)
151 3upv_A Heat shock protein STI1 99.1 6.3E-10 2.2E-14 94.4 12.9 97 448-545 4-100 (126)
152 2r5s_A Uncharacterized protein 99.1 2.2E-10 7.4E-15 103.7 10.6 83 463-546 89-173 (176)
153 4eqf_A PEX5-related protein; a 99.1 2.1E-10 7.2E-15 116.2 11.5 130 404-547 182-311 (365)
154 2ho1_A Type 4 fimbrial biogene 99.1 7.1E-10 2.4E-14 105.8 14.5 96 449-545 142-237 (252)
155 3ieg_A DNAJ homolog subfamily 99.1 4.3E-10 1.5E-14 112.6 13.2 110 399-523 3-115 (359)
156 2vq2_A PILW, putative fimbrial 99.1 8.9E-10 3E-14 102.6 14.4 97 449-546 77-176 (225)
157 2vq2_A PILW, putative fimbrial 99.1 1.1E-09 3.8E-14 101.9 15.0 87 448-534 113-200 (225)
158 2gw1_A Mitochondrial precursor 99.1 4.1E-10 1.4E-14 119.0 13.4 106 395-516 2-107 (514)
159 3mkr_A Coatomer subunit epsilo 99.1 9E-10 3.1E-14 108.5 14.9 112 399-527 130-245 (291)
160 3qou_A Protein YBBN; thioredox 99.1 4E-10 1.4E-14 110.8 12.2 130 399-544 117-282 (287)
161 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.9E-09 6.6E-14 101.6 16.2 135 400-547 42-214 (225)
162 1w3b_A UDP-N-acetylglucosamine 99.1 4.7E-10 1.6E-14 114.7 12.6 137 399-535 67-222 (388)
163 2xcb_A PCRH, regulatory protei 99.1 1.6E-10 5.4E-15 100.7 7.7 96 449-545 19-114 (142)
164 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.5E-14 105.0 14.7 142 397-546 41-198 (283)
165 1fch_A Peroxisomal targeting s 99.1 1.8E-09 6.2E-14 109.0 16.3 147 399-546 132-314 (368)
166 1w3b_A UDP-N-acetylglucosamine 99.1 8.5E-10 2.9E-14 112.7 14.0 147 399-546 169-334 (388)
167 3cv0_A Peroxisome targeting si 99.1 3.5E-10 1.2E-14 111.9 10.7 132 399-546 172-315 (327)
168 2ho1_A Type 4 fimbrial biogene 99.1 1.1E-09 3.8E-14 104.4 13.8 131 399-545 71-203 (252)
169 3ro3_A PINS homolog, G-protein 99.1 2.3E-09 7.9E-14 93.8 14.7 142 396-547 6-159 (164)
170 3u4t_A TPR repeat-containing p 99.1 1.3E-09 4.4E-14 105.1 14.1 118 399-531 74-191 (272)
171 3fp2_A TPR repeat-containing p 99.1 5.2E-10 1.8E-14 119.2 12.2 116 387-518 13-128 (537)
172 3sz7_A HSC70 cochaperone (SGT) 99.1 1.5E-09 5.3E-14 96.7 13.4 98 448-546 11-108 (164)
173 2hr2_A Hypothetical protein; a 99.1 8.8E-10 3E-14 96.9 11.4 97 448-545 11-130 (159)
174 3hym_B Cell division cycle pro 99.1 2.7E-09 9.2E-14 105.6 16.3 145 400-545 23-187 (330)
175 2y4t_A DNAJ homolog subfamily 99.1 1.5E-09 5.1E-14 112.9 15.0 113 397-524 24-139 (450)
176 2l6j_A TPR repeat-containing p 99.1 1.5E-09 5E-14 89.3 11.9 79 449-527 5-89 (111)
177 1na3_A Designed protein CTPR2; 99.1 2E-09 6.7E-14 85.1 12.2 81 448-528 9-89 (91)
178 3hym_B Cell division cycle pro 99.0 1.9E-09 6.5E-14 106.7 14.5 133 399-547 90-223 (330)
179 2fo7_A Synthetic consensus TPR 99.0 1.6E-09 5.4E-14 91.6 11.7 101 400-515 36-136 (136)
180 3n71_A Histone lysine methyltr 99.0 5.1E-09 1.7E-13 110.3 16.7 147 393-547 303-465 (490)
181 3ulq_A Response regulator aspa 99.0 5.3E-09 1.8E-13 106.9 15.8 132 396-535 140-283 (383)
182 1xnf_A Lipoprotein NLPI; TPR, 99.0 1.7E-09 5.7E-14 104.3 11.2 126 408-545 14-139 (275)
183 3ma5_A Tetratricopeptide repea 99.0 2.8E-09 9.5E-14 86.7 10.5 67 449-515 8-74 (100)
184 3u3w_A Transcriptional activat 99.0 3.6E-09 1.2E-13 104.0 13.2 107 398-512 154-267 (293)
185 4g1t_A Interferon-induced prot 99.0 2.7E-09 9.4E-14 111.8 13.0 125 399-529 51-185 (472)
186 3u3w_A Transcriptional activat 99.0 2.8E-09 9.6E-14 104.8 12.2 138 398-545 114-265 (293)
187 3q49_B STIP1 homology and U bo 99.0 6.1E-09 2.1E-13 89.2 12.8 98 448-546 9-106 (137)
188 3mkr_A Coatomer subunit epsilo 99.0 3.9E-09 1.3E-13 103.9 12.5 96 410-520 177-273 (291)
189 2vsy_A XCC0866; transferase, g 98.9 1.9E-09 6.5E-14 116.5 11.0 119 412-546 2-120 (568)
190 3cv0_A Peroxisome targeting si 98.9 1.6E-08 5.4E-13 99.9 16.7 147 399-546 89-269 (327)
191 2ifu_A Gamma-SNAP; membrane fu 98.9 3E-09 1E-13 105.5 11.1 108 398-516 115-228 (307)
192 3q15_A PSP28, response regulat 98.9 1.1E-08 3.8E-13 104.4 15.4 143 396-547 138-291 (378)
193 2ifu_A Gamma-SNAP; membrane fu 98.9 4.5E-09 1.5E-13 104.2 11.9 109 397-515 74-188 (307)
194 3fp2_A TPR repeat-containing p 98.9 3.9E-09 1.3E-13 112.4 12.2 153 394-547 238-408 (537)
195 2kc7_A BFR218_protein; tetratr 98.9 6.6E-09 2.2E-13 83.8 10.7 69 451-519 3-72 (99)
196 2kc7_A BFR218_protein; tetratr 98.9 6.1E-10 2.1E-14 90.0 4.4 93 402-516 3-95 (99)
197 3edt_B KLC 2, kinesin light ch 98.9 8.6E-09 2.9E-13 99.2 13.3 109 396-511 82-198 (283)
198 2gw1_A Mitochondrial precursor 98.9 1.1E-08 3.7E-13 108.0 15.3 119 400-527 373-494 (514)
199 2kck_A TPR repeat; tetratricop 98.9 5.4E-09 1.8E-13 85.5 10.2 96 450-546 8-106 (112)
200 3q15_A PSP28, response regulat 98.9 1.5E-08 5.3E-13 103.3 15.3 109 397-514 180-293 (378)
201 3rkv_A Putative peptidylprolyl 98.9 5.7E-09 2E-13 92.7 10.6 96 448-544 11-124 (162)
202 3ulq_A Response regulator aspa 98.9 1.2E-08 4.1E-13 104.2 14.2 110 395-513 180-295 (383)
203 1w26_A Trigger factor, TF; cha 98.9 2.8E-09 9.7E-14 110.1 9.4 85 167-262 156-242 (432)
204 2qfc_A PLCR protein; TPR, HTH, 98.9 1.7E-08 5.8E-13 99.2 14.7 128 399-535 115-255 (293)
205 2qfc_A PLCR protein; TPR, HTH, 98.9 1.4E-08 4.9E-13 99.7 13.9 107 398-512 154-267 (293)
206 1na3_A Designed protein CTPR2; 98.9 6.9E-09 2.4E-13 81.8 9.4 84 398-496 8-91 (91)
207 3nf1_A KLC 1, kinesin light ch 98.9 1.6E-08 5.5E-13 99.0 14.0 142 396-545 66-223 (311)
208 4a1s_A PINS, partner of inscut 98.9 1.4E-08 4.9E-13 104.1 13.6 125 396-531 45-181 (411)
209 2xpi_A Anaphase-promoting comp 98.9 1.9E-08 6.6E-13 108.6 14.9 132 399-546 373-504 (597)
210 1elw_A TPR1-domain of HOP; HOP 98.9 3E-08 1E-12 81.7 12.7 96 449-545 5-100 (118)
211 2lni_A Stress-induced-phosphop 98.9 2E-08 6.7E-13 85.0 11.8 97 448-545 16-112 (133)
212 3gw4_A Uncharacterized protein 98.9 1.4E-08 4.9E-13 93.0 11.7 128 398-534 25-165 (203)
213 3ro3_A PINS homolog, G-protein 98.9 2.3E-08 8E-13 87.2 12.5 108 398-514 48-161 (164)
214 3nf1_A KLC 1, kinesin light ch 98.8 2.9E-08 9.8E-13 97.2 14.4 109 396-511 108-224 (311)
215 1pc2_A Mitochondria fission pr 98.8 8.5E-09 2.9E-13 89.4 9.2 102 415-531 14-120 (152)
216 2xev_A YBGF; tetratricopeptide 98.8 2.7E-08 9.2E-13 84.1 12.3 95 451-546 5-105 (129)
217 3sf4_A G-protein-signaling mod 98.8 3.3E-08 1.1E-12 100.7 14.6 130 397-535 185-326 (406)
218 2xpi_A Anaphase-promoting comp 98.8 8.5E-08 2.9E-12 103.5 17.5 147 399-546 305-470 (597)
219 3ro2_A PINS homolog, G-protein 98.8 3.1E-08 1.1E-12 97.6 12.9 123 398-531 4-138 (338)
220 3ro2_A PINS homolog, G-protein 98.8 3.9E-08 1.3E-12 96.9 13.5 141 397-547 181-333 (338)
221 2dba_A Smooth muscle cell asso 98.8 6.3E-08 2.2E-12 83.6 12.8 97 449-546 29-128 (148)
222 2vyi_A SGTA protein; chaperone 98.8 9.6E-08 3.3E-12 80.1 13.4 99 447-546 11-109 (131)
223 1a17_A Serine/threonine protei 98.8 8.9E-08 3E-12 84.4 13.7 99 447-546 12-110 (166)
224 3qww_A SET and MYND domain-con 98.8 9.4E-08 3.2E-12 99.0 15.8 124 395-525 294-430 (433)
225 2ond_A Cleavage stimulation fa 98.8 5.6E-08 1.9E-12 96.2 13.4 111 401-525 101-212 (308)
226 2fbn_A 70 kDa peptidylprolyl i 98.8 1.2E-07 4.2E-12 87.0 14.5 98 447-545 37-150 (198)
227 3sf4_A G-protein-signaling mod 98.8 3.6E-08 1.2E-12 100.5 11.9 122 399-531 9-142 (406)
228 4a1s_A PINS, partner of inscut 98.8 3.6E-08 1.2E-12 101.1 11.9 137 398-544 222-370 (411)
229 1na0_A Designed protein CTPR3; 98.7 1.1E-07 3.7E-12 79.0 12.8 98 448-546 9-106 (125)
230 1ouv_A Conserved hypothetical 98.7 1.1E-07 3.7E-12 92.0 14.3 75 450-528 76-158 (273)
231 2c2l_A CHIP, carboxy terminus 98.7 6.7E-08 2.3E-12 94.5 12.0 95 450-545 6-100 (281)
232 1elr_A TPR2A-domain of HOP; HO 98.7 7.1E-08 2.4E-12 81.0 10.6 96 449-545 5-107 (131)
233 3qwp_A SET and MYND domain-con 98.7 2.5E-07 8.4E-12 96.0 16.4 126 397-529 285-423 (429)
234 2ond_A Cleavage stimulation fa 98.7 1.4E-07 4.8E-12 93.3 13.2 108 400-522 51-174 (308)
235 1wao_1 Serine/threonine protei 98.7 8.4E-09 2.9E-13 108.9 3.7 102 399-515 40-154 (477)
236 1t11_A Trigger factor, TF; hel 98.7 9.8E-09 3.4E-13 104.6 4.0 85 167-262 159-245 (392)
237 4g1t_A Interferon-induced prot 98.7 6.7E-08 2.3E-12 101.1 10.5 121 399-526 94-219 (472)
238 1ouv_A Conserved hypothetical 98.6 4.2E-07 1.4E-11 87.7 14.8 91 449-544 111-213 (273)
239 4f3v_A ESX-1 secretion system 98.6 2.7E-07 9.1E-12 89.2 13.1 109 401-523 137-248 (282)
240 1dce_A Protein (RAB geranylger 98.6 2.8E-07 9.5E-12 99.2 14.6 116 399-529 63-191 (567)
241 2v5f_A Prolyl 4-hydroxylase su 98.6 3.8E-07 1.3E-11 74.6 11.4 79 451-529 8-93 (104)
242 1ihg_A Cyclophilin 40; ppiase 98.6 1.5E-07 5.1E-12 95.9 11.0 95 450-545 225-335 (370)
243 3k9i_A BH0479 protein; putativ 98.6 5.4E-08 1.8E-12 81.3 6.4 86 460-546 2-90 (117)
244 3gw4_A Uncharacterized protein 98.6 5.2E-07 1.8E-11 82.4 13.7 110 396-513 63-178 (203)
245 1zu2_A Mitochondrial import re 98.6 1.9E-07 6.7E-12 81.8 9.8 72 459-530 13-94 (158)
246 3rjv_A Putative SEL1 repeat pr 98.6 2E-07 6.8E-12 86.9 9.9 129 399-528 18-174 (212)
247 3rjv_A Putative SEL1 repeat pr 98.6 2.6E-07 9.1E-12 86.1 10.7 76 448-526 125-210 (212)
248 1dce_A Protein (RAB geranylger 98.5 5.4E-07 1.9E-11 96.9 13.7 137 393-544 22-171 (567)
249 2v5f_A Prolyl 4-hydroxylase su 98.5 8.7E-07 3E-11 72.4 11.7 83 399-489 5-87 (104)
250 2r5s_A Uncharacterized protein 98.5 2.3E-07 7.9E-12 83.5 8.9 116 394-510 35-172 (176)
251 3dra_A Protein farnesyltransfe 98.5 1.4E-06 4.6E-11 85.9 13.5 113 399-526 67-190 (306)
252 3dra_A Protein farnesyltransfe 98.5 1E-06 3.5E-11 86.9 12.3 123 408-545 41-174 (306)
253 1hz4_A MALT regulatory protein 98.5 2.7E-06 9.2E-11 86.0 15.9 108 398-514 52-167 (373)
254 1nzn_A CGI-135 protein, fissio 98.4 1.2E-06 4.2E-11 73.0 10.0 104 413-531 15-123 (126)
255 3bee_A Putative YFRE protein; 98.4 1.5E-06 5.2E-11 69.3 9.9 68 450-517 8-78 (93)
256 3q7a_A Farnesyltransferase alp 98.4 3E-06 1E-10 84.5 14.0 120 411-545 66-195 (349)
257 3dss_A Geranylgeranyl transfer 98.4 6.2E-06 2.1E-10 81.8 16.0 100 415-529 90-192 (331)
258 3ma5_A Tetratricopeptide repea 98.3 9.5E-07 3.2E-11 71.4 7.3 80 399-493 7-88 (100)
259 1klx_A Cysteine rich protein B 98.3 2.8E-06 9.7E-11 73.2 10.7 97 405-522 31-135 (138)
260 2kat_A Uncharacterized protein 98.3 3.5E-06 1.2E-10 69.6 10.9 78 466-544 3-80 (115)
261 3dss_A Geranylgeranyl transfer 98.3 3.5E-06 1.2E-10 83.6 12.6 124 406-544 36-172 (331)
262 4f3v_A ESX-1 secretion system 98.3 1.1E-06 3.7E-11 84.9 8.6 127 403-546 106-237 (282)
263 3qou_A Protein YBBN; thioredox 98.3 1E-06 3.5E-11 86.2 7.7 113 398-510 150-283 (287)
264 2ooe_A Cleavage stimulation fa 98.3 3.9E-06 1.3E-10 89.6 12.3 116 400-529 322-438 (530)
265 3q7a_A Farnesyltransferase alp 98.2 3.7E-06 1.3E-10 83.9 10.4 116 399-529 88-214 (349)
266 3n71_A Histone lysine methyltr 98.2 5E-06 1.7E-10 87.5 10.6 110 396-512 348-465 (490)
267 1hz4_A MALT regulatory protein 98.2 2E-05 6.7E-10 79.6 14.3 138 396-544 11-162 (373)
268 2xm6_A Protein corresponding t 98.2 1.3E-05 4.3E-10 84.7 13.2 78 448-527 363-451 (490)
269 2ooe_A Cleavage stimulation fa 98.1 1.8E-05 6.1E-10 84.4 14.2 114 416-545 255-384 (530)
270 3o48_A Mitochondria fission 1 98.1 2.2E-05 7.7E-10 65.5 10.5 83 450-532 42-128 (134)
271 1y8m_A FIS1; mitochondria, unk 98.1 4E-05 1.4E-09 64.9 11.6 81 450-530 41-125 (144)
272 1xi4_A Clathrin heavy chain; a 98.0 2.8E-05 9.6E-10 89.1 13.5 111 401-534 1197-1332(1630)
273 3gty_X Trigger factor, TF; cha 98.0 5.1E-06 1.7E-10 85.7 6.6 88 52-159 154-241 (433)
274 1klx_A Cysteine rich protein B 98.0 3.7E-05 1.3E-09 66.1 11.0 94 412-528 8-105 (138)
275 1b89_A Protein (clathrin heavy 98.0 1.9E-05 6.6E-10 80.8 9.9 109 401-534 124-259 (449)
276 2xm6_A Protein corresponding t 98.0 8.4E-05 2.9E-09 78.2 14.8 93 400-511 76-180 (490)
277 4b4t_Q 26S proteasome regulato 97.9 6.1E-05 2.1E-09 77.4 12.0 121 394-514 50-207 (434)
278 3ffl_A Anaphase-promoting comp 97.9 0.00021 7.2E-09 62.2 12.8 118 400-525 21-164 (167)
279 4b4t_Q 26S proteasome regulato 97.8 0.00011 3.8E-09 75.5 13.0 102 399-509 135-243 (434)
280 3ly7_A Transcriptional activat 97.8 0.00032 1.1E-08 69.9 15.6 114 402-516 199-344 (372)
281 3e4b_A ALGK; tetratricopeptide 97.8 7.3E-05 2.5E-09 78.0 11.4 121 401-527 178-329 (452)
282 1xi4_A Clathrin heavy chain; a 97.8 8.2E-05 2.8E-09 85.3 12.2 107 404-515 1054-1167(1630)
283 1pc2_A Mitochondria fission pr 97.8 0.00019 6.5E-09 62.1 10.8 78 399-490 32-113 (152)
284 3u64_A Protein TP_0956; tetrat 97.8 0.00012 4.2E-09 70.0 10.5 87 415-514 179-272 (301)
285 3e4b_A ALGK; tetratricopeptide 97.7 0.00017 5.8E-09 75.2 11.4 75 448-528 283-366 (452)
286 3mv2_B Coatomer subunit epsilo 97.5 0.00024 8.2E-09 69.4 8.5 99 405-521 182-292 (310)
287 3u64_A Protein TP_0956; tetrat 97.4 0.0007 2.4E-08 64.8 10.6 66 463-528 178-251 (301)
288 3qwp_A SET and MYND domain-con 97.3 0.00084 2.9E-08 69.3 10.3 94 395-495 325-426 (429)
289 3mv2_B Coatomer subunit epsilo 97.3 0.00083 2.8E-08 65.6 9.6 122 402-537 103-232 (310)
290 2ff4_A Probable regulatory pro 97.2 0.0051 1.7E-07 62.5 14.8 113 398-510 114-233 (388)
291 3qww_A SET and MYND domain-con 97.2 0.0011 3.9E-08 68.3 10.0 80 396-482 337-421 (433)
292 3bee_A Putative YFRE protein; 97.2 0.00075 2.6E-08 53.5 6.4 68 399-481 6-76 (93)
293 1b89_A Protein (clathrin heavy 96.7 0.0052 1.8E-07 62.9 9.9 140 393-534 142-300 (449)
294 3gty_X Trigger factor, TF; cha 96.7 0.0035 1.2E-07 64.5 8.1 72 168-262 154-227 (433)
295 4e6h_A MRNA 3'-END-processing 96.5 0.061 2.1E-06 58.6 17.5 144 404-548 383-535 (679)
296 1nzn_A CGI-135 protein, fissio 96.5 0.017 6E-07 47.9 9.8 44 447-490 73-116 (126)
297 1y8m_A FIS1; mitochondria, unk 96.4 0.046 1.6E-06 46.2 11.8 43 447-489 76-118 (144)
298 3ffl_A Anaphase-promoting comp 96.4 0.016 5.4E-07 50.4 9.1 94 398-492 62-165 (167)
299 3o48_A Mitochondria fission 1 96.4 0.04 1.4E-06 46.0 11.1 44 447-490 77-120 (134)
300 4e6h_A MRNA 3'-END-processing 96.0 0.029 1E-06 61.1 11.4 134 402-550 437-574 (679)
301 4h7y_A Dual specificity protei 95.7 0.17 5.7E-06 43.2 11.9 113 396-517 17-129 (161)
302 4gns_B Protein CSD3, chitin bi 95.4 0.1 3.5E-06 57.0 12.5 60 450-509 339-398 (754)
303 3mv2_A Coatomer subunit alpha; 95.0 0.26 8.9E-06 47.6 12.4 116 401-516 116-241 (325)
304 3txn_A 26S proteasome regulato 94.9 0.25 8.6E-06 49.7 12.7 98 404-510 104-209 (394)
305 3mkr_B Coatomer subunit alpha; 94.9 0.88 3E-05 43.9 15.8 114 402-515 105-231 (320)
306 3ly7_A Transcriptional activat 94.9 0.22 7.4E-06 49.5 12.0 69 474-544 269-337 (372)
307 4b4t_R RPN7, 26S proteasome re 94.4 0.25 8.7E-06 50.6 11.8 100 401-512 133-238 (429)
308 1zbp_A Hypothetical protein VP 94.4 0.28 9.5E-06 46.2 10.8 70 456-525 5-74 (273)
309 2uy1_A Cleavage stimulation fa 93.9 1 3.4E-05 47.0 15.2 119 401-521 215-359 (493)
310 3kae_A CDC27, possible protein 93.8 0.42 1.4E-05 41.4 9.7 69 451-519 65-151 (242)
311 3txn_A 26S proteasome regulato 93.4 2.1 7.2E-05 43.0 16.0 134 398-531 18-191 (394)
312 1ya0_A SMG-7 transcript varian 92.7 0.82 2.8E-05 47.5 12.2 83 446-528 150-232 (497)
313 2v6y_A AAA family ATPase, P60 92.5 0.26 9E-06 37.6 6.1 40 391-430 2-42 (83)
314 2cpt_A SKD1 protein, vacuolar 91.5 0.58 2E-05 38.2 7.4 44 388-431 6-50 (117)
315 2uy1_A Cleavage stimulation fa 90.6 1.4 4.8E-05 45.9 11.4 127 401-548 288-415 (493)
316 2w2u_A Hypothetical P60 katani 90.0 0.49 1.7E-05 36.0 5.2 38 393-430 13-50 (83)
317 4b4t_P 26S proteasome regulato 89.6 4.9 0.00017 41.1 14.2 105 398-511 136-247 (445)
318 2v6x_A Vacuolar protein sortin 88.5 1.2 4.1E-05 34.0 6.5 42 390-431 4-45 (85)
319 4gns_B Protein CSD3, chitin bi 88.4 0.51 1.8E-05 51.6 6.0 60 400-474 338-397 (754)
320 1wfd_A Hypothetical protein 15 88.3 2 7E-05 33.3 7.9 37 395-431 11-47 (93)
321 4a5x_A MITD1, MIT domain-conta 86.5 3 0.0001 31.8 7.7 35 397-431 14-48 (86)
322 3mkq_B Coatomer subunit alpha; 85.5 5.2 0.00018 35.1 9.7 28 400-427 35-62 (177)
323 4g26_A Pentatricopeptide repea 85.5 5.3 0.00018 41.5 11.7 67 450-516 107-176 (501)
324 4g26_A Pentatricopeptide repea 85.4 4.9 0.00017 41.8 11.4 101 402-516 108-211 (501)
325 1zbp_A Hypothetical protein VP 85.1 3.5 0.00012 38.7 9.0 63 406-483 4-66 (273)
326 2dl1_A Spartin; SPG20, MIT, st 84.6 7.4 0.00025 31.3 9.3 74 394-467 17-97 (116)
327 1ya0_A SMG-7 transcript varian 83.5 4 0.00014 42.4 9.5 81 399-494 152-232 (497)
328 4fhn_B Nucleoporin NUP120; pro 83.3 2.3 7.7E-05 49.4 8.3 105 403-507 846-963 (1139)
329 3mkq_A Coatomer beta'-subunit; 82.0 5.1 0.00018 43.9 10.4 24 451-474 684-707 (814)
330 4b4t_S RPN3, 26S proteasome re 81.9 2 7E-05 44.4 6.4 68 448-515 231-303 (523)
331 2crb_A Nuclear receptor bindin 81.4 8.1 0.00028 29.5 7.8 37 396-432 12-48 (97)
332 1wy6_A Hypothetical protein ST 80.9 5.5 0.00019 33.3 7.3 61 451-511 93-154 (172)
333 4b4t_P 26S proteasome regulato 78.4 18 0.0006 36.9 12.3 88 447-534 136-232 (445)
334 3t5v_B Nuclear mRNA export pro 78.2 3.7 0.00013 42.0 6.9 103 413-515 140-254 (455)
335 3mkq_B Coatomer subunit alpha; 77.4 4.9 0.00017 35.3 6.5 47 459-510 16-62 (177)
336 2ff4_A Probable regulatory pro 77.0 16 0.00054 36.4 11.3 77 454-530 121-219 (388)
337 4b4t_R RPN7, 26S proteasome re 76.6 3.3 0.00011 42.2 6.1 76 450-525 133-213 (429)
338 3mkq_A Coatomer beta'-subunit; 76.2 6.6 0.00022 43.0 9.0 48 455-507 701-761 (814)
339 2dl1_A Spartin; SPG20, MIT, st 73.9 7.9 0.00027 31.1 6.3 70 462-539 17-90 (116)
340 3ax2_A Mitochondrial import re 71.4 5.5 0.00019 29.2 4.5 39 393-431 11-49 (73)
341 3lpz_A GET4 (YOR164C homolog); 70.6 80 0.0027 30.6 14.4 110 393-505 29-159 (336)
342 1om2_A Protein (mitochondrial 68.6 10 0.00035 29.3 5.7 41 391-431 12-52 (95)
343 2wb7_A PT26-6P; extra chromoso 68.1 26 0.00087 35.6 9.9 26 486-511 491-516 (526)
344 3ax2_A Mitochondrial import re 68.0 14 0.00047 27.1 5.9 38 487-524 22-59 (73)
345 3spa_A Mtrpol, DNA-directed RN 66.5 54 0.0018 37.1 12.9 101 400-511 128-230 (1134)
346 2crb_A Nuclear receptor bindin 66.3 41 0.0014 25.7 10.0 27 483-509 16-42 (97)
347 3kae_A CDC27, possible protein 66.0 66 0.0023 27.9 13.4 52 453-509 38-89 (242)
348 4h7y_A Dual specificity protei 63.6 28 0.00094 29.6 7.8 72 410-497 71-142 (161)
349 2yin_A DOCK2, dedicator of cyt 61.8 13 0.00043 37.9 6.6 96 402-497 38-141 (436)
350 3eab_A Spastin; spastin, MIT, 60.3 54 0.0018 24.9 8.2 68 395-462 12-86 (89)
351 2wpv_A GET4, UPF0363 protein Y 60.1 1.2E+02 0.0042 28.9 13.5 106 398-506 32-158 (312)
352 1qsa_A Protein (soluble lytic 59.3 17 0.00058 38.8 7.3 57 454-510 291-347 (618)
353 4a5x_A MITD1, MIT domain-conta 58.4 57 0.0019 24.6 8.9 22 488-509 22-43 (86)
354 4gq2_M Nucleoporin NUP120; bet 57.8 29 0.001 39.1 9.3 93 403-495 844-949 (950)
355 2rpa_A Katanin P60 ATPase-cont 54.1 64 0.0022 23.8 8.0 48 485-532 15-68 (78)
356 2vkj_A TM1634; membrane protei 52.5 73 0.0025 24.1 7.6 33 397-429 51-83 (106)
357 2br9_A 14-3-3E, 14-3-3 protein 52.1 36 0.0012 31.2 7.2 55 415-476 146-201 (234)
358 2cfu_A SDSA1; SDS-hydrolase, l 52.0 28 0.00094 37.5 7.6 48 483-530 450-497 (658)
359 2npm_A 14-3-3 domain containin 51.2 40 0.0014 31.4 7.5 54 415-476 172-226 (260)
360 2w2u_A Hypothetical P60 katani 51.1 60 0.0021 24.2 7.2 16 501-516 45-60 (83)
361 2v6y_A AAA family ATPase, P60 50.9 67 0.0023 23.9 7.5 17 500-516 36-52 (83)
362 3ubw_A 14-3-3E, 14-3-3 protein 49.5 41 0.0014 31.2 7.2 55 415-476 172-227 (261)
363 1wfd_A Hypothetical protein 15 49.3 79 0.0027 24.1 7.8 17 500-516 40-56 (93)
364 3uzd_A 14-3-3 protein gamma; s 49.2 42 0.0015 30.9 7.2 55 415-476 147-202 (248)
365 3spa_A Mtrpol, DNA-directed RN 48.9 1.6E+02 0.0056 33.3 13.0 96 450-546 129-230 (1134)
366 3r9m_A BRO1 domain-containing 48.8 1.1E+02 0.0038 30.1 11.0 30 482-511 253-282 (376)
367 2ymb_A MITD1, MIT domain-conta 48.7 3.7 0.00013 38.3 0.0 40 393-432 17-56 (257)
368 1om2_A Protein (mitochondrial 48.5 22 0.00076 27.4 4.4 36 487-522 25-60 (95)
369 1o9d_A 14-3-3-like protein C; 48.4 43 0.0015 31.1 7.2 54 415-475 151-205 (260)
370 3myv_A SUSD superfamily protei 47.7 1.3E+02 0.0045 30.3 11.6 47 464-510 164-218 (454)
371 3t5x_A PCI domain-containing p 46.5 38 0.0013 30.2 6.5 41 447-487 13-53 (203)
372 4gq2_M Nucleoporin NUP120; bet 45.0 27 0.00093 39.4 6.4 51 455-509 817-867 (950)
373 3iqu_A 14-3-3 protein sigma; s 43.4 58 0.002 29.8 7.1 55 415-476 149-204 (236)
374 4b4t_S RPN3, 26S proteasome re 43.4 1.6E+02 0.0053 30.4 11.1 104 397-515 268-377 (523)
375 2v6x_A Vacuolar protein sortin 42.8 1E+02 0.0035 22.9 7.8 17 493-509 24-40 (85)
376 2cpt_A SKD1 protein, vacuolar 42.3 1.3E+02 0.0045 24.0 10.4 18 501-518 44-61 (117)
377 2rkl_A Vacuolar protein sortin 41.9 43 0.0015 22.7 4.4 40 391-430 12-51 (53)
378 2cfu_A SDSA1; SDS-hydrolase, l 41.4 32 0.0011 37.0 6.0 48 451-498 452-499 (658)
379 2vkj_A TM1634; membrane protei 41.2 1.1E+02 0.0039 23.0 7.1 47 482-529 53-103 (106)
380 2oo2_A Hypothetical protein AF 39.6 69 0.0023 24.2 5.8 39 392-430 28-66 (86)
381 2pmr_A Uncharacterized protein 39.1 73 0.0025 24.1 5.9 39 391-429 31-69 (87)
382 2rpa_A Katanin P60 ATPase-cont 38.9 54 0.0018 24.2 5.0 40 388-431 5-44 (78)
383 3qnk_A Putative lipoprotein; a 38.7 2E+02 0.007 29.5 11.6 48 464-511 153-211 (517)
384 3efz_A 14-3-3 protein; 14-3-3, 38.4 55 0.0019 30.5 6.2 57 415-476 168-225 (268)
385 2ijq_A Hypothetical protein; s 38.2 1.5E+02 0.0052 25.2 8.5 69 401-476 34-103 (161)
386 4fhn_B Nucleoporin NUP120; pro 36.8 29 0.00098 40.1 5.0 52 454-509 818-869 (1139)
387 2o8p_A 14-3-3 domain containin 35.8 41 0.0014 30.5 4.8 59 411-476 137-196 (227)
388 2g0u_A Type III secretion syst 35.8 1.4E+02 0.0049 22.7 7.3 40 498-537 32-71 (92)
389 2ijq_A Hypothetical protein; s 34.4 1.9E+02 0.0065 24.6 8.5 58 453-510 37-103 (161)
390 3t5x_A PCI domain-containing p 33.4 94 0.0032 27.6 6.9 33 483-515 15-47 (203)
391 2ca5_A MXIH; transport protein 31.8 1.6E+02 0.0053 22.0 6.4 33 498-530 26-58 (85)
392 3rau_A Tyrosine-protein phosph 31.3 3.7E+02 0.013 26.1 11.9 29 482-510 252-280 (363)
393 3otn_A SUSD superfamily protei 30.6 2.2E+02 0.0074 28.9 10.1 48 464-511 160-226 (482)
394 3eab_A Spastin; spastin, MIT, 29.3 86 0.0029 23.8 4.8 61 462-534 11-79 (89)
395 2zan_A Vacuolar protein sortin 28.6 12 0.00041 38.1 0.0 38 394-431 6-43 (444)
396 3i4g_A SUSD-like carbohydrate 28.2 3.5E+02 0.012 27.8 11.2 48 464-511 167-227 (528)
397 3mcx_A SUSD superfamily protei 27.7 1.1E+02 0.0038 31.1 7.2 95 417-511 93-231 (477)
398 3lxu_X Tripeptidyl-peptidase 2 27.6 4.1E+02 0.014 30.9 12.2 88 439-527 1232-1328(1354)
399 3kez_A Putative sugar binding 27.2 1E+02 0.0034 31.3 6.7 47 464-510 170-224 (461)
400 3htx_A HEN1; HEN1, small RNA m 26.7 72 0.0025 35.2 5.6 65 285-349 560-650 (950)
401 1zb1_A BRO1 protein; AIP1, BRO 26.4 96 0.0033 30.7 6.3 27 484-510 259-285 (392)
402 3myv_A SUSD superfamily protei 25.7 71 0.0024 32.3 5.3 55 415-476 164-218 (454)
403 3lew_A SUSD-like carbohydrate 25.4 1.2E+02 0.004 31.2 6.9 48 464-511 174-232 (495)
404 2wm9_A Dedicator of cytokinesi 24.7 57 0.002 32.9 4.2 97 401-498 13-137 (428)
405 3lew_A SUSD-like carbohydrate 24.5 1.3E+02 0.0046 30.7 7.2 58 415-476 174-231 (495)
406 3esl_A Checkpoint serine/threo 24.0 3.7E+02 0.013 23.7 10.8 84 420-513 58-146 (202)
407 3kez_A Putative sugar binding 24.0 80 0.0027 32.0 5.3 30 447-476 195-224 (461)
408 3jys_A SUSD superfamily protei 23.8 4.7E+02 0.016 26.5 11.2 94 417-510 94-222 (499)
409 2a9u_A Ubiquitin carboxyl-term 23.6 2.5E+02 0.0085 23.3 7.3 40 391-430 34-73 (144)
410 2xze_A STAM-binding protein; h 22.9 1.6E+02 0.0056 24.5 6.1 40 390-429 31-70 (146)
411 1lqb_D HIF-1 alpha, hypoxia-in 22.6 33 0.0011 20.4 1.1 9 1-9 20-28 (34)
412 3ckc_A SUSD; TPR repeat, carbo 22.5 5.8E+02 0.02 25.8 11.7 47 464-510 169-231 (527)
413 3qtm_A Uncharacterized protein 22.2 3E+02 0.01 25.5 7.9 105 391-495 14-132 (346)
414 3u84_A Menin; MLL, JUND, ledgf 21.5 2.7E+02 0.0094 27.7 7.9 53 477-529 313-371 (550)
415 3snx_A SUSD homolog, putative 21.3 1.8E+02 0.0062 29.4 7.3 29 448-476 191-219 (460)
416 3re2_A Predicted protein; meni 21.2 2.9E+02 0.01 26.9 7.9 64 464-529 280-349 (472)
417 2yhe_A SEC-alkyl sulfatase; hy 26.5 20 0.0007 38.5 0.0 51 451-501 464-514 (668)
418 3htx_A HEN1; HEN1, small RNA m 20.7 2.5E+02 0.0086 31.0 8.3 58 52-113 560-649 (950)
419 3mcx_A SUSD superfamily protei 20.6 84 0.0029 32.0 4.6 30 447-476 201-230 (477)
420 3hdx_A SUSD homolog, SUSD supe 20.1 1.8E+02 0.0061 29.5 7.0 31 447-477 196-226 (478)
No 1
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=4.7e-66 Score=525.70 Aligned_cols=355 Identities=81% Similarity=1.270 Sum_probs=222.7
Q ss_pred cCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccc
Q 008689 27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106 (557)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~G 106 (557)
+++++..++++|++|+++++|+|+..|..||.|.+||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|
T Consensus 1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G 80 (356)
T 3jxv_A 1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG 80 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence 36778889999999999999999778999999999999999999999999987789999999999999999999999999
Q ss_pred cEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCC
Q 008689 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186 (557)
Q Consensus 107 e~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g 186 (557)
++++|+|||++|||+.+.++.||+|++++|+|+|++|..+.++..++.+.++++.+|.|+.+|..++.|++||+++++||
T Consensus 81 e~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg 160 (356)
T 3jxv_A 81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG 160 (356)
T ss_dssp -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred CEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeee
Q 008689 187 MVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~ 266 (557)
++|+++.++.|.+|.+++++||+++|.+|+.||++++.|||+++||+.|.+.......|||+++|+|+|+|++|....++
T Consensus 161 t~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv 240 (356)
T 3jxv_A 161 TVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240 (356)
T ss_dssp CEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEE
T ss_pred CEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999998866666789999999999999999999999
Q ss_pred eCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEE
Q 008689 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (557)
Q Consensus 267 ~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v 346 (557)
+.|.+++++++++|.|..+|..|+.|+|||++++.||++|+++.. ...+|++|.+|.+.+|+||+.+|..|++||++.|
T Consensus 241 ~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v 319 (356)
T 3jxv_A 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV 319 (356)
T ss_dssp STTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred ccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence 999999999999999988999999999999999999999998753 3578999999999999999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (557)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~ 383 (557)
+|++.++||+.+... ...||++++++|+|+|.++.+
T Consensus 320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence 999999999987543 256899999999999999874
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=3.9e-57 Score=479.07 Aligned_cols=385 Identities=36% Similarity=0.635 Sum_probs=336.2
Q ss_pred cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (557)
Q Consensus 151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp 226 (557)
.++++.++++.+|+|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 678999999999999777999999999999999999999986 6999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEE
Q 008689 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF 306 (557)
Q Consensus 227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~ 306 (557)
|+++||+.|.+ +.|||+++|+|+|+|++|.. .++..|++++++++++|.|..+|..|+.|+|||++++ +|++|
T Consensus 109 ~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f 181 (457)
T 1kt0_A 109 PEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMF 181 (457)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEE
T ss_pred hHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEE
Confidence 99999998876 68999999999999999976 4777899999999999999889999999999999999 89999
Q ss_pred EecCCCCCcccEEEEcCccc---hhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689 307 VKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (557)
Q Consensus 307 ~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~ 383 (557)
+++ +++|.+|++. ++++|+.|+..|++||++.+.++|.++|+..+... ..+|+++.+.|.++|..+.+
T Consensus 182 ~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~ 252 (457)
T 1kt0_A 182 DCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK 252 (457)
T ss_dssp EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEEEEEEC
T ss_pred ecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhhhhccc
Confidence 853 4899999874 89999999999999999999999999999988753 36899999999999999999
Q ss_pred cccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (557)
Q Consensus 384 ~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (557)
....|.+...+++..+..++++|+.+++.++|.+|+.+|++|+++.+......+++..+...+...+|+|+|.||+++++
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 332 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999887777788888888999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (557)
|++|+.+|++||+++|++.++||++|.+|..+++|++|+.+|++|++++|++..++..+..+..++.+.+++++++|++|
T Consensus 333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q 008689 544 FAKMNTGS 551 (557)
Q Consensus 544 f~~~~~~~ 551 (557)
|.++....
T Consensus 413 f~k~~~~d 420 (457)
T 1kt0_A 413 FKKFAEQD 420 (457)
T ss_dssp --------
T ss_pred Hhhhhhcc
Confidence 99876543
No 3
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=3.4e-43 Score=372.14 Aligned_cols=375 Identities=31% Similarity=0.493 Sum_probs=274.0
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
+++|+.|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 68999999999999954599999999999999989999999988778999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccc
Q 008689 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (557)
Q Consensus 115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~ 194 (557)
|+++||..+.++.||++++++|+|+|++|... ++..+++++++++..|.|+..|..|+.|++||++++ +|++|++ .+
T Consensus 109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~-~~ 185 (457)
T 1kt0_A 109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDC-RD 185 (457)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEE-EE
T ss_pred hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEec-Cc
Confidence 99999999998899999999999999999865 566888999999999999999999999999999999 8888776 57
Q ss_pred eEEEecCC---CCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcc
Q 008689 195 VEFTVKDG---HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271 (557)
Q Consensus 195 ~~~~~g~~---~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~ 271 (557)
+.|.+|.| .++++|+.|+..|+.|+++.|.++|.++|+..|.+ ...|||++++.|.+.+.++..-.+...
T Consensus 186 ~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~----~~~ip~~~~l~y~~~l~~~~~A~~~~~--- 258 (457)
T 1kt0_A 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKESWE--- 258 (457)
T ss_dssp EEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG----GGTBCTTCCEEEEEEEEEEECCCCGGG---
T ss_pred eEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc----ccCCCCCCEEEEEhhhhhcccCcchhh---
Confidence 89999976 48999999999999999999999999999998875 236899999999999998854221110
Q ss_pred eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEEEEcC
Q 008689 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAP 350 (557)
Q Consensus 272 ~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~ 350 (557)
+.+. ..|... ..+..-|.. -+..|+. .-+..++.++... +
T Consensus 259 ---~~~~-----~~~~~a-------~~~~~~G~~-------------~~~~g~~~~A~~~y~~Al~~~-----------p 299 (457)
T 1kt0_A 259 ---MDTK-----EKLEQA-------AIVKEKGTV-------------YFKGGKYMQAVIQYGKIVSWL-----------E 299 (457)
T ss_dssp ---SCHH-----HHHHHH-------HHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHH-----------T
T ss_pred ---cCHH-----HHHHHH-------HHHHHHHHH-------------HHhCCCHHHHHHHHHHHHHHh-----------c
Confidence 0000 000000 000000000 0111221 1233344444211 0
Q ss_pred CCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
. ... +.. ....+.....+..+.++|..+++.++|++|+..|++|+.+.+
T Consensus 300 ~-----------------~~~---------~~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 300 M-----------------EYG---------LSE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp T-----------------CCS---------CCH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred c-----------------ccc---------CCh-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 0 000 000 001122334578889999999999999999999999999877
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008689 431 YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504 (557)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~ 504 (557)
.+. .+|+++|.||+++++|++|+.++++|++++|++..+++.++.++..++++++|.+.
T Consensus 349 ~~~---------------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 34899999999999999999999999999999999999999999999999988754
No 4
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=3.3e-40 Score=322.11 Aligned_cols=223 Identities=44% Similarity=0.762 Sum_probs=205.5
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
+++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 58899999999999955599999999999999999999999987678999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccc--cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (557)
Q Consensus 115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (557)
|++|||..+.++.||++++++|+|+|+++... ++. .+.++.++++++|+|...++.||.|+++|++++ +|++|++
T Consensus 129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~- 205 (280)
T 1q1c_A 129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ- 205 (280)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-
T ss_pred cHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-
Confidence 99999999988899999999999999999864 444 788899999999999878999999999999998 8888887
Q ss_pred cceEEEecCCC---CCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccee
Q 008689 193 DGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264 (557)
Q Consensus 193 ~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~ 264 (557)
.++.|.+|.++ +++||+++|.+|+.||+++|.|||+++||+.+.+ ...|||+++|+|+|+|+++..+.
T Consensus 206 ~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~----~~~IP~~~~l~f~V~L~~i~~~~ 276 (280)
T 1q1c_A 206 RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 276 (280)
T ss_dssp EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG----GGTBCTTCCEEEEEEEEEEECCC
T ss_pred CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCc----cCccCCCCeEEEEEEEEEEeCCC
Confidence 69999999998 5999999999999999999999999999998764 12599999999999999997654
No 5
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=100.00 E-value=2.4e-37 Score=314.18 Aligned_cols=276 Identities=39% Similarity=0.711 Sum_probs=257.1
Q ss_pred eeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccc---hhhHHHHHHhccC
Q 008689 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMK 339 (557)
Q Consensus 263 ~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~ 339 (557)
..+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++|+++ |++|.+|.+. ++++|+.+|..|+
T Consensus 18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~ 89 (336)
T 1p5q_A 18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRME 89 (336)
T ss_dssp ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCC
Confidence 35667899999999999999878999999999999998 89999864 6899999987 4899999999999
Q ss_pred cCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHH
Q 008689 340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419 (557)
Q Consensus 340 ~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~ 419 (557)
+||++.+.++|.++||..+... ..+|+++.+.|+++|.++.+....+.+..+..+..+..+...|+.+++.|+|++|+
T Consensus 90 ~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~ 167 (336)
T 1p5q_A 90 KGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL 167 (336)
T ss_dssp TTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999988753 25899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (557)
Q Consensus 420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~ 499 (557)
..|++|+.+.+.......++..+...+...+++|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|+
T Consensus 168 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 247 (336)
T 1p5q_A 168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247 (336)
T ss_dssp HHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999887777777888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
+|+.+|++|++++|++..+...+..+..++.+.++++++.|++||.++.
T Consensus 248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998874
No 6
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-38 Score=319.41 Aligned_cols=277 Identities=34% Similarity=0.530 Sum_probs=212.3
Q ss_pred CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecC-CcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEE
Q 008689 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL 346 (557)
Q Consensus 269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~-g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v 346 (557)
+.++.++|+++|.|. .|..|+.|+|||.+++.+ |++|+++.. .+.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus 48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~ 124 (338)
T 2if4_A 48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124 (338)
T ss_dssp ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence 567999999999995 899999999999999985 999998642 467999999999 899999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCceEEEEEEEeeeeec---ccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHH
Q 008689 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE---KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE 423 (557)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~---~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~ 423 (557)
+|++.++||..+... ...||+++++.|.|+|..+... ...|.++.++++..+..++..|+.+++.++|.+|+.+|.
T Consensus 125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~ 203 (338)
T 2if4_A 125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203 (338)
T ss_dssp EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999988632 2468999999999999998764 347889999999999999999999999999999999999
Q ss_pred HHHHHhhhcC--CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH
Q 008689 424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501 (557)
Q Consensus 424 ~Al~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A 501 (557)
+|+.+.+.+. ............+...+|+|+|.||+++++|++|+.+|+++|+++|++.++||++|.+|..+|+|++|
T Consensus 204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A 283 (338)
T 2if4_A 204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA 283 (338)
T ss_dssp HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999877643 12223334455566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT 549 (557)
Q Consensus 502 ~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (557)
+.+|++|++++|++..++..+..+..+.....+++++.|++||.....
T Consensus 284 ~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999888888888888999999987543
No 7
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=3.6e-37 Score=313.05 Aligned_cols=220 Identities=39% Similarity=0.688 Sum_probs=206.2
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
.+.++.++++++|.|+.+|..||.|.|||++++.||++|+++ .++.|.+|.+.+++||+.||.+|++||+++|+||
T Consensus 125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~ 200 (356)
T 3jxv_A 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200 (356)
T ss_dssp SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence 568999999999999999999999999999999999999988 4799999999999999999999999999999999
Q ss_pred CCcccCCCCCCC-----CCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEe
Q 008689 115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV 189 (557)
Q Consensus 115 ~~~ayg~~~~~~-----~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~ 189 (557)
|+++||+.|.+. .||++++|.|+|+|++|..+.++..+.++.++++++|.|+..++.||.|++||++++.+|++|
T Consensus 201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f 280 (356)
T 3jxv_A 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF 280 (356)
T ss_dssp GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence 999999998764 599999999999999999989999999999999999999999999999999999999999999
Q ss_pred eec-----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
+++ +|+.|.+|.+++|+||+++|.+|+.||+++|.|||++|||+.+... ...|||+++|+|+|+|++|.
T Consensus 281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~ 354 (356)
T 3jxv_A 281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFV 354 (356)
T ss_dssp EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEE
T ss_pred eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEE
Confidence 865 6899999999999999999999999999999999999999886421 14699999999999999985
No 8
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=1.9e-36 Score=295.56 Aligned_cols=223 Identities=37% Similarity=0.671 Sum_probs=203.1
Q ss_pred cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (557)
Q Consensus 151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp 226 (557)
.++++.++++++|.|...+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 678999999999999777999999999999999999999986 6899999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCc
Q 008689 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT 304 (557)
Q Consensus 227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~ 304 (557)
|++|||+.|.+ +.|||+++|+|+|+|++|.. .++. .|+++.++++++|.|...|..|+.|+|||.+++ +|+
T Consensus 129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~ 201 (280)
T 1q1c_A 129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK 201 (280)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence 99999998875 57999999999999999976 4666 789999999999999878999999999999998 899
Q ss_pred EEEecCCCCCcccEEEEcCccc---hhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeee
Q 008689 305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~ 381 (557)
+|++ .+++|.+|.+. +|+||+.+|..|++||++.|+++++|+||..+... ..||+++++.|+|+|.++
T Consensus 202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i 272 (280)
T 1q1c_A 202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF 272 (280)
T ss_dssp EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence 9975 36999999998 49999999999999999999999999999987543 259999999999999999
Q ss_pred eecccccC
Q 008689 382 EKEKESWD 389 (557)
Q Consensus 382 ~~~~~~~~ 389 (557)
....+.|+
T Consensus 273 ~~~~~~W~ 280 (280)
T 1q1c_A 273 EKAKESWE 280 (280)
T ss_dssp ECCCC---
T ss_pred eCCCCCCC
Confidence 98888874
No 9
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.93 E-value=2.7e-26 Score=232.89 Aligned_cols=298 Identities=19% Similarity=0.256 Sum_probs=175.8
Q ss_pred CCCCCcCccCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcC-CCEEeecCCCCCceEEEccCC-cccHHH
Q 008689 19 LPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGW 96 (557)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~d-g~~~~~t~~~~~p~~~~lg~~-~~~~gl 96 (557)
..+++.++++.....+.++|+.|+++++|+| ..|..||.|.|||++++.+ |++|++++.++.|+.|.+|.+ ++|+||
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~ 109 (338)
T 2if4_A 31 SQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL 109 (338)
T ss_dssp ----CCCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHH
T ss_pred CcccCCCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHH
Confidence 3445555677777788999999999999999 7999999999999999984 999999976678999999999 899999
Q ss_pred HHHHcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCe
Q 008689 97 DIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDE 174 (557)
Q Consensus 97 ~~~l~gm~~Ge~~~v~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~ 174 (557)
+++|.||++|++++|+|||+++||..+. .+.||++++++|.|+|+++....+.. .
T Consensus 110 e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------~---------- 166 (338)
T 2if4_A 110 AIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------A---------- 166 (338)
T ss_dssp HHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------T----------
T ss_pred HHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------c----------
Confidence 9999999999999999999999999886 35788999999999888775421100 0
Q ss_pred EEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEE
Q 008689 175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254 (557)
Q Consensus 175 V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~ 254 (557)
.+-..+++-+.
T Consensus 167 ----------------------------~~~~~~~~~~~----------------------------------------- 177 (338)
T 2if4_A 167 ----------------------------RSDMTVEERIG----------------------------------------- 177 (338)
T ss_dssp ----------------------------TTBCCHHHHHH-----------------------------------------
T ss_pred ----------------------------cccCCHHHHHH-----------------------------------------
Confidence 00000000000
Q ss_pred EEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc-chhhHHHH
Q 008689 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDR 333 (557)
Q Consensus 255 v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~ 333 (557)
. ...... -|... +..|+. .-+..++.
T Consensus 178 -------~----------a~~~~~-----------------------~g~~~-------------~~~g~~~~A~~~y~~ 204 (338)
T 2if4_A 178 -------A----------ADRRKM-----------------------DGNSL-------------FKEEKLEEAMQQYEM 204 (338)
T ss_dssp -------H----------HHHHHH-----------------------HHHHT-------------CSSSCCHHHHHHHHH
T ss_pred -------H----------HHHHHH-----------------------HHHHH-------------HhcCCHHHHHHHHHH
Confidence 0 000000 00000 001111 12334555
Q ss_pred HHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcC
Q 008689 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAG 413 (557)
Q Consensus 334 ~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~ 413 (557)
++....... .|...+.. ...........+.+.|..+++.+
T Consensus 205 Al~~~p~~~----------~~~~~~~~------------------------------~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 205 AIAYMGDDF----------MFQLYGKY------------------------------QDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHSCHHH----------HHTCCHHH------------------------------HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHhccch----------hhhhcccH------------------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 553221100 00000000 00001112246789999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH-H
Q 008689 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA-Y 492 (557)
Q Consensus 414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a-~ 492 (557)
+|++|+..|++|+.+.+.+. .+++|+|.+|+.+++|++|+.+++++++++|++..++..++.+ .
T Consensus 245 ~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNP---------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred CHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999876432 3489999999999999999999999999999999999999998 4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 493 IQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 493 ~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
...+.+++|.+.|++++...|++..
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 4567788999999999999998854
No 10
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.91 E-value=6.4e-24 Score=178.88 Aligned_cols=110 Identities=51% Similarity=0.887 Sum_probs=104.1
Q ss_pred ecCCCeEEEEEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 34 IGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
+.++|++|+++++|+| .. ++.||.|.+||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|++++|+
T Consensus 3 ~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ 81 (113)
T 1yat_A 3 VIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81 (113)
T ss_dssp ECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred CCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 4789999999999999 55 999999999999999999999999876689999999999999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|||++|||+.+.++.||++++++|+|+|++++
T Consensus 82 ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik 113 (113)
T 1yat_A 82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113 (113)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred ECHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence 99999999999888899999999999999873
No 11
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.91 E-value=7.5e-24 Score=185.79 Aligned_cols=111 Identities=52% Similarity=0.906 Sum_probs=105.9
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
.++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus 33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 112 (144)
T 3o5e_A 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112 (144)
T ss_dssp CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence 68999999999999955899999999999999999999999987778999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689 115 PELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (557)
Q Consensus 115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (557)
|++|||..+.++.|||+++|+|+|+|++|+.
T Consensus 113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg 143 (144)
T 3o5e_A 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143 (144)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence 9999999999889999999999999999863
No 12
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.91 E-value=9.6e-24 Score=179.63 Aligned_cols=109 Identities=46% Similarity=0.832 Sum_probs=102.1
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCC-------CCceEEEccCCcccHHHHHHHccccccc
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~-------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge 107 (557)
.|+|++|+++++|+|...|+.||.|.|||++++.||++|++++.. +.|+.|.+|.+++++||+++|.+|++|+
T Consensus 2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 81 (119)
T 3kz7_A 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81 (119)
T ss_dssp CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence 579999999999999657999999999999999999999999752 4799999999999999999999999999
Q ss_pred EEEEEecCCcccCCCCCCC-CCCCCCcEEEEEEEEEe
Q 008689 108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143 (557)
Q Consensus 108 ~~~v~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~ 143 (557)
+++|+|||++|||+.+.++ .||++++++|+|+|+++
T Consensus 82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 9999999999999999865 79999999999999986
No 13
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.91 E-value=6.2e-24 Score=182.75 Aligned_cols=111 Identities=52% Similarity=0.906 Sum_probs=105.4
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
.++|++|+++++|+|...|+.||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 96 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 78999999999999955799999999999999999999999987668999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689 115 PELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (557)
Q Consensus 115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (557)
|++|||+.+.++.||++++++|+|+|++++.
T Consensus 97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~ 127 (128)
T 3o5q_A 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127 (128)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence 9999999999889999999999999999863
No 14
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.91 E-value=8.4e-24 Score=183.49 Aligned_cols=112 Identities=55% Similarity=0.988 Sum_probs=105.3
Q ss_pred cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (557)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip 114 (557)
+++|++|+++++|+|...|+.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 67999999999999955799999999999999999999999976558999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (557)
Q Consensus 115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (557)
|++|||+.+.++.||++++++|+|+|+++...
T Consensus 92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~ 123 (135)
T 1r9h_A 92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE 123 (135)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence 99999999988899999999999999999864
No 15
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.90 E-value=2e-23 Score=180.16 Aligned_cols=110 Identities=53% Similarity=0.881 Sum_probs=104.8
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
...++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+
T Consensus 24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~ 102 (133)
T 2y78_A 24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 102 (133)
T ss_dssp EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence 45889999999999999 89999999999999999999999999876789999999999999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
|||++|||+.+.++.||||++++|+|+|+++
T Consensus 103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV 133 (133)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence 9999999999988889999999999999874
No 16
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=186.09 Aligned_cols=125 Identities=35% Similarity=0.630 Sum_probs=105.2
Q ss_pred CCCCCcCccCcceee--ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCCcccHH
Q 008689 19 LPDDAPMMKVGEEKE--IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKG 95 (557)
Q Consensus 19 ~~~~~~~~~~~~~~~--~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~~~~~g 95 (557)
.+..+|+..+..+.. ++++|++|+++++|+| ..+..||.|.|||++++. +|++|++++.+++|+.|.+|.+++++|
T Consensus 6 ~~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G 84 (134)
T 3b7x_A 6 APGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWG 84 (134)
T ss_dssp ---CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHH
T ss_pred CCCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHH
Confidence 345677777666553 4899999999999999 788899999999999988 699999998766899999999999999
Q ss_pred HHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 96 WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 96 l~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|+++|.+|++|++++|+|||++|||+.+.++.||++++++|+|+|+++.
T Consensus 85 ~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 85 MELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp HHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred HHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence 9999999999999999999999999999888899999999999999874
No 17
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.90 E-value=3.4e-23 Score=188.15 Aligned_cols=130 Identities=29% Similarity=0.552 Sum_probs=115.0
Q ss_pred CCCCCCcCccCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCC-cccHH
Q 008689 18 DLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKG 95 (557)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~-~~~~g 95 (557)
-+++.+++++.......+++|++|+++++|+| ..|..||.|.|||++++. +|++|++++.++.|+.|.+|.+ ++++|
T Consensus 30 ~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G 108 (180)
T 2f4e_A 30 PSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG 108 (180)
T ss_dssp ----CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHH
T ss_pred CCCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHH
Confidence 44455666667777778999999999999999 799999999999999998 6999999988778999999999 99999
Q ss_pred HHHHHcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEeeeccc
Q 008689 96 WDIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD 148 (557)
Q Consensus 96 l~~~l~gm~~Ge~~~v~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~~~d 148 (557)
|+++|.+|++|++++|+|||++|||..+. ++.||++++++|+|+|+++..+..
T Consensus 109 ~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e 163 (180)
T 2f4e_A 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163 (180)
T ss_dssp HHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred HHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence 99999999999999999999999999986 467999999999999999986543
No 18
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.90 E-value=2e-23 Score=174.11 Aligned_cols=106 Identities=51% Similarity=0.943 Sum_probs=99.9
Q ss_pred CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCc
Q 008689 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (557)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ 117 (557)
|++|+++++|+|...++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 78999999999943499999999999999999999999976557999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 118 ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
|||+.+.++.||++++++|+|+|+++
T Consensus 81 ayG~~~~~~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 81 AYGATGHPGIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 99999988889999999999999886
No 19
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.90 E-value=2.4e-23 Score=179.13 Aligned_cols=110 Identities=56% Similarity=0.992 Sum_probs=103.5
Q ss_pred eecCCCeEEE--EEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689 33 EIGNQGLKKK--LVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (557)
Q Consensus 33 ~~~~~g~~~~--~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~ 109 (557)
..+++|++|+ ++++|+| .. |+.||.|.|+|++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|+++
T Consensus 18 ~~~~~Gl~~~K~~l~~G~G-~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~ 96 (130)
T 2lgo_A 18 GPGSMSAQLEKKVLTPGDG-VTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKA 96 (130)
T ss_dssp SSSSSSCCCCEEEEECCCS-SCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEE
T ss_pred eeCCCceEEEEEEEeccCC-CccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence 3478999999 9999999 55 999999999999999899999999886689999999999999999999999999999
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 110 ~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
+|.|||++|||+.+.++.||++++++|+|+|+++
T Consensus 97 ~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 97 LFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV 130 (130)
T ss_dssp EEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred EEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 9999999999999988889999999999999874
No 20
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=174.71 Aligned_cols=111 Identities=38% Similarity=0.668 Sum_probs=103.8
Q ss_pred eecCCCeEEEEEEccc--CcCCCCCCCEEEEEEEEEEc-CCCEEeecCC--CCCceEEEccCCcccHHHHHHHccccccc
Q 008689 33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~--G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~--~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge 107 (557)
.++++|++|+++++|+ | ..++.||.|.|||++++. ||++|++++. .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus 8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 86 (125)
T 4dip_A 8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE 86 (125)
T ss_dssp GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence 4588999999999999 6 899999999999999998 9999999973 35899999999999999999999999999
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689 108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (557)
Q Consensus 108 ~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (557)
+++|.|||++|||+.+.+ .||+|++++|+|+|+++..
T Consensus 87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence 999999999999999965 8999999999999999864
No 21
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.89 E-value=5.6e-23 Score=183.63 Aligned_cols=112 Identities=43% Similarity=0.696 Sum_probs=104.7
Q ss_pred eeecCCCeEEEEEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689 32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (557)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~ 110 (557)
...+++|++|+++++|+| .. |..||.|.|||++++.||++|++++.++.|+.|.+| ++|+||+++|.+|++|++++
T Consensus 32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~ 108 (167)
T 1jvw_A 32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR 108 (167)
T ss_dssp EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence 356899999999999999 66 999999999999999999999999876689999995 89999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (557)
Q Consensus 111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (557)
|+|||++|||+.+.++.||||++++|+|+|+++...
T Consensus 109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG 144 (167)
T ss_dssp EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC
Confidence 999999999999988889999999999999999753
No 22
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=183.35 Aligned_cols=114 Identities=25% Similarity=0.435 Sum_probs=98.0
Q ss_pred ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689 34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (557)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~ 109 (557)
++++||+|+++++|+| ..| ..||.|.|||++++. ||++||||+.+++|+.|.+|.+++|+||++||.+|++|+++
T Consensus 7 ~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~ 85 (165)
T 2lkn_A 7 LREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIA 85 (165)
T ss_dssp HHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred ccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence 4789999999999999 543 589999999999986 49999999999999999999999999999999999999999
Q ss_pred EEEecCCcccCCC--------CCCCC-----------------------------CCCCCcEEEEEEEEEeeeccc
Q 008689 110 VFTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKD 148 (557)
Q Consensus 110 ~v~ip~~~ayg~~--------~~~~~-----------------------------ip~~~~l~~~v~l~~~~~~~d 148 (557)
+|+|||++|||.. ...+. ++++++|+|+|||++|..+..
T Consensus 86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e 161 (165)
T 2lkn_A 86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT 161 (165)
T ss_dssp EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence 9999999999921 00111 234478999999999987654
No 23
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.88 E-value=1.5e-22 Score=187.52 Aligned_cols=106 Identities=34% Similarity=0.616 Sum_probs=101.3
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++| +.|+.|.+| ++|+||+++|.+|++|++++|+
T Consensus 113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~ 186 (219)
T 3oe2_A 113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186 (219)
T ss_dssp EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence 45899999999999999 89999999999999999999999999 589999998 8999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|||++|||+.+.++.||||++++|+|+|++++
T Consensus 187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence 99999999999888899999999999999985
No 24
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.88 E-value=2e-22 Score=187.39 Aligned_cols=111 Identities=52% Similarity=0.873 Sum_probs=105.6
Q ss_pred eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEE
Q 008689 32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111 (557)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v 111 (557)
...+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|
T Consensus 99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v 177 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL 177 (209)
T ss_dssp CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence 355899999999999999 7899999999999999999999999987778999999999999999999999999999999
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689 112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (557)
Q Consensus 112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (557)
+|||++|||+.+.++.||+|++++|+|+|+++
T Consensus 178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 99999999999988889999999999999874
No 25
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.88 E-value=3.7e-22 Score=172.08 Aligned_cols=112 Identities=46% Similarity=0.834 Sum_probs=101.2
Q ss_pred eecCCCeE-EEEEEcc---cCcCCCCCCCEEEEEEEEEE-cCCCEEeecCCCCCceEEEccCCcccHHHHHHHccccccc
Q 008689 33 EIGNQGLK-KKLVKEG---EGWDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (557)
Q Consensus 33 ~~~~~g~~-~~~~~~G---~G~~~~~~gd~V~v~y~~~~-~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge 107 (557)
.++++|+. ++++++| +| ..|..||.|.|||++++ .||++|++++.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus 11 ~~~~~g~~~~~il~~G~~g~g-~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge 89 (129)
T 2vn1_A 11 ELTADGGVIKTILKKGDEGEE-NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE 89 (129)
T ss_dssp ECSTTSSEEEEEEECCCCSGG-GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred EECCCCCEEEEEEeCCCCCCC-CcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence 34566654 5789966 45 88999999999999999 7999999998766899999999999999999999999999
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689 108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (557)
Q Consensus 108 ~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (557)
+++|+|||++|||+.+.++.||++++++|+|+|+++..
T Consensus 90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence 99999999999999998888999999999999999875
No 26
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.88 E-value=2.6e-22 Score=180.56 Aligned_cols=154 Identities=29% Similarity=0.392 Sum_probs=132.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (557)
.++++..+..+++.|+.+|+.|+|.+|+..|.+|+.+++... ...++++.........+|+|+|.||+++++|++|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 457788999999999999999999999999999999865432 23345566667788899999999999999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
.+|+++|.++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|. .+...+..+..++++.++++++.|++||+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998 88999999999999999999999999996
No 27
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.88 E-value=1.1e-22 Score=175.30 Aligned_cols=111 Identities=41% Similarity=0.706 Sum_probs=103.2
Q ss_pred eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcc------ccc
Q 008689 32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK 105 (557)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~g------m~~ 105 (557)
...+++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.| |++
T Consensus 7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~ 85 (129)
T 1u79_A 7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT 85 (129)
T ss_dssp CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence 345889999999999999 8899999999999999999999999986558999999999999999999999 999
Q ss_pred ccEEEEEecCCcccCCCCCC-----CCCCCCCcEEEEEEEEEe
Q 008689 106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW 143 (557)
Q Consensus 106 Ge~~~v~ip~~~ayg~~~~~-----~~ip~~~~l~~~v~l~~~ 143 (557)
|++++|.|||++|||+.+.+ +.||+|++++|+|+|+++
T Consensus 86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999999998863 479999999999999886
No 28
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=175.71 Aligned_cols=109 Identities=34% Similarity=0.576 Sum_probs=101.7
Q ss_pred eecCCCe-EEEEEEcccCcC--CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689 33 EIGNQGL-KKKLVKEGEGWD--TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (557)
Q Consensus 33 ~~~~~g~-~~~~~~~G~G~~--~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~ 109 (557)
.++++|+ +|+++++|+| . .|..||.|.|||++++.||++|+++ +|+.|.+|.+++++||+++|.+|++|+++
T Consensus 38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~ 112 (157)
T 2jwx_A 38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA 112 (157)
T ss_dssp ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence 4578886 8999999999 5 8999999999999999999999984 79999999999999999999999999999
Q ss_pred EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEeeec
Q 008689 110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV 146 (557)
Q Consensus 110 ~v~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~ 146 (557)
+|+|||++|||+.+ .++.||+|++++|+|+|+++...
T Consensus 113 ~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~ 150 (157)
T 2jwx_A 113 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL 150 (157)
T ss_dssp EEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred EEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence 99999999999999 67789999999999999998764
No 29
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.88 E-value=5.3e-22 Score=168.29 Aligned_cols=108 Identities=34% Similarity=0.563 Sum_probs=100.1
Q ss_pred eecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689 33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (557)
Q Consensus 33 ~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~ 110 (557)
.++++| ++|+++++|+|. ..|+.||.|.|||++++.||++|+++ +|+.|.+|.+++++||+++|.+|++|++++
T Consensus 8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~ 83 (118)
T 2awg_A 8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM 83 (118)
T ss_dssp ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence 446667 999999999993 27999999999999999899999984 799999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|+|||++|||+.+.++.||++++++|+|+|++++
T Consensus 84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence 9999999999999888899999999999999875
No 30
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.88 E-value=3.1e-22 Score=185.70 Aligned_cols=110 Identities=36% Similarity=0.634 Sum_probs=104.0
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+| ++|+||+++|.+|++|++++|+
T Consensus 102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~ 178 (213)
T 1fd9_A 102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY 178 (213)
T ss_dssp EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 89999999999999999999999999876689999995 8999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (557)
|||++|||+.+.++.|||+++++|+|+|+++..
T Consensus 179 IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred ECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence 999999999998788999999999999999863
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.87 E-value=4.7e-22 Score=201.41 Aligned_cols=271 Identities=22% Similarity=0.293 Sum_probs=196.6
Q ss_pred cccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCC---CCchHHHHHhhccCCcEEEE
Q 008689 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLL 223 (557)
Q Consensus 147 ~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~i 223 (557)
.++..++++.++++.+|.|...|..|+.|+|+|++++ +|++|+++ |+.|.+|.|. ++++|+++|.+|+.|+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l 96 (336)
T 1p5q_A 19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 96 (336)
T ss_dssp ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence 4566789999999999999778999999999999999 88888877 8999999886 58999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCC
Q 008689 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG 303 (557)
Q Consensus 224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g 303 (557)
.+||+++||..|.+. ..||+++++.|++.|.++..-.... .+.+. ..|... .. +..-|
T Consensus 97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~------~~a~~-----~~p~~a---~~----~~~~g 154 (336)
T 1p5q_A 97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESW------EMNSE-----EKLEQS---TI----VKERG 154 (336)
T ss_dssp EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGG------GCCHH-----HHHHHH---HH----HHHHH
T ss_pred EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchh------cCCHH-----HHHHHH---HH----HHHHH
Confidence 999999999988751 2589999999999999985422111 00000 000000 00 00000
Q ss_pred cEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689 304 TVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~ 382 (557)
. .-+..|+. .-+..++.++.... . ... +.
T Consensus 155 ~-------------~~~~~g~~~~A~~~y~~Al~~~p-----------~-----------------~~~---------~~ 184 (336)
T 1p5q_A 155 T-------------VYFKEGKYKQALLQYKKIVSWLE-----------Y-----------------ESS---------FS 184 (336)
T ss_dssp H-------------HHHHHTCHHHHHHHHHHHHHHTT-----------T-----------------CCC---------CC
T ss_pred H-------------HHHHCCCHHHHHHHHHHHHHHhh-----------c-----------------ccc---------CC
Confidence 0 00111221 12333444443211 0 000 00
Q ss_pred ecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh
Q 008689 383 KEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462 (557)
Q Consensus 383 ~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~ 462 (557)
.....+.....+..+.+.|..+++.|+|++|+..|++|+++.+.+. .+++++|.+|..++
T Consensus 185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g 244 (336)
T 1p5q_A 185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVN 244 (336)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHCC
Confidence 0001122334578889999999999999999999999999977543 34889999999999
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEI 511 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l 511 (557)
+|++|+.+++++++++|++..+++.++.++..++++++| ...|++++..
T Consensus 245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5567776643
No 32
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.87 E-value=1.5e-21 Score=182.40 Aligned_cols=108 Identities=49% Similarity=0.915 Sum_probs=101.5
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (557)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ 112 (557)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+| ++|+||+++|.+|++|++++|+
T Consensus 117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~ 193 (224)
T 1q6h_A 117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 193 (224)
T ss_dssp EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence 34789999999999999 89999999999999999999999999877789999995 8999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (557)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (557)
|||+++||+.+.++ |||+++++|+|+|++++
T Consensus 194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~ik 224 (224)
T 1q6h_A 194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK 224 (224)
T ss_dssp ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred ECchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence 99999999999875 99999999999999873
No 33
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=170.26 Aligned_cols=113 Identities=34% Similarity=0.539 Sum_probs=103.0
Q ss_pred eeecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689 32 KEIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (557)
Q Consensus 32 ~~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~ 109 (557)
..++++| ++|+++++|+|. ..|+.||.|.|||++++.||++|+++ +|+.|.+|.+++++||+++|.+|++|+++
T Consensus 11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~ 86 (135)
T 2d9f_A 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA 86 (135)
T ss_dssp EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence 3456667 999999999992 28999999999999999999999984 79999999999999999999999999999
Q ss_pred EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEeeeccc
Q 008689 110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD 148 (557)
Q Consensus 110 ~v~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~~d 148 (557)
+|+|||++|||+.+ .++.||++++++|+|+|+++....+
T Consensus 87 ~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 87 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD 126 (135)
T ss_dssp EEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred EEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence 99999999999998 6778999999999999999986544
No 34
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=155.97 Aligned_cols=96 Identities=52% Similarity=0.898 Sum_probs=90.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (557)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~ 130 (557)
..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+|||++|||+.+.++.||+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~ 83 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG 83 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence 67899999999999998899999999876689999999999999999999999999999999999999999998888999
Q ss_pred CCcEEEEEEEEEeeec
Q 008689 131 NATLQFDVELLSWTSV 146 (557)
Q Consensus 131 ~~~l~~~v~l~~~~~~ 146 (557)
+++++|+|+|+++...
T Consensus 84 ~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 84 GATLVFEVELLKIERR 99 (102)
T ss_dssp TCCEEEEEEEEEEGGG
T ss_pred CCeEEEEEEEEEeccc
Confidence 9999999999998753
No 35
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.83 E-value=2.6e-20 Score=161.48 Aligned_cols=118 Identities=32% Similarity=0.594 Sum_probs=100.9
Q ss_pred cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (557)
Q Consensus 151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp 226 (557)
.++++.++++++|+|...+..+|.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 678999999999999768999999999999999999999986 7999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--CCcceeE
Q 008689 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIK 274 (557)
Q Consensus 227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~k 274 (557)
|++|||+.|.+ +.|||+++|+|+|+|+++.. .++. +|++++|
T Consensus 92 ~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k 135 (135)
T 1r9h_A 92 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTILR 135 (135)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC--------------
T ss_pred hHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence 99999998875 57999999999999999976 4666 6777765
No 36
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.83 E-value=2.6e-19 Score=166.55 Aligned_cols=178 Identities=32% Similarity=0.466 Sum_probs=140.3
Q ss_pred eEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHH
Q 008689 371 TVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVA 449 (557)
Q Consensus 371 ~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~-~~~~~~~~~~~ 449 (557)
.......+..+.+..+.|.++.+++...+..++..|+.+++.|+|.+|+..|.+|+.+.+........ .......+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34445667788889999999999999999999999999999999999999999999998876644332 23334555678
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
++.|+|.||+++++|++|+.+|++++.++|++.++++++|.+|..+|++++|++.|+++++++|++..+...+..+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 008689 530 KEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 530 ~~~~~~~~~~~~~mf~~~~ 548 (557)
.+..+.++..|++||....
T Consensus 170 ~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHC--------------
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999999998654
No 37
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.83 E-value=7.5e-20 Score=160.31 Aligned_cols=115 Identities=39% Similarity=0.605 Sum_probs=105.4
Q ss_pred eeeee--CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689 263 VSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK 340 (557)
Q Consensus 263 ~~d~~--~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~ 340 (557)
..|++ .|++++++++++|.|..+|..|+.|+|||++++.||++|+++. ..+.|++|.+|.+.+|+||+.+|..|++
T Consensus 26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~ 103 (144)
T 3o5e_A 26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKK 103 (144)
T ss_dssp CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCCB
T ss_pred cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCCC
Confidence 45666 6899999999999997789999999999999999999999864 2578999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (557)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~ 382 (557)
||++.|.|++.++||..+.. ..|||+++|+|+|+|+++.
T Consensus 104 Ge~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik 142 (144)
T 3o5e_A 104 GEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 142 (144)
T ss_dssp TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred CCEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence 99999999999999999875 3799999999999999886
No 38
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.82 E-value=4.6e-20 Score=162.60 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=123.5
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (557)
|.+-.....+..+++.|+.+|+.|+|++|+.+|++|+++.|..+... ..........+|+|+|.|+.++++|++|+.
T Consensus 2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444567899999999999999999999999999999999743321 011122345589999999999999999999
Q ss_pred HHHHHHcc-------CCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 470 LCTKVLDL-------DSRNVKAL----YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 470 ~~~~al~~-------~p~~~ka~----~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
+|++||++ +|++.++| ||+|.++..+|++++|+.+|++|++++|+++.+..++..+++.++++.++
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999 99999999999999999999999999999999999999998888777654
No 39
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.82 E-value=8e-20 Score=155.29 Aligned_cols=105 Identities=35% Similarity=0.551 Sum_probs=97.3
Q ss_pred ccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec-----------cceEEEecCCCCCchHHHHHhhccCCcE
Q 008689 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-----------DGVEFTVKDGHFCPTLAKAVKTMKKGEK 220 (557)
Q Consensus 152 d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-----------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~ 220 (557)
+.++.++++++|+|...|..+|.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++
T Consensus 3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 82 (119)
T 3kz7_A 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82 (119)
T ss_dssp SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence 56789999999999778999999999999999999999986 6899999999999999999999999999
Q ss_pred EEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 221 ~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
++|.|||++|||+.|.+ ...|||+++|+|+|+|+++
T Consensus 83 ~~v~ip~~~aYG~~g~~----~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 83 ARLEIEPEWAYGKKGQP----DAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEECGGGTTCTTCBG----GGTBCTTCCEEEEEEEEEE
T ss_pred EEEEECcHHhcCCCCCC----CCccCcCCeEEEEEEEEEe
Confidence 99999999999998875 1369999999999999986
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=1.7e-19 Score=155.30 Aligned_cols=115 Identities=30% Similarity=0.481 Sum_probs=108.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
++.+..++++|+.+|+.|+|++|+..|++|+++.|.+. .+++|+|.||+++++|++|+.+|+++|
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 35688999999999999999999999999999987654 348999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+++|++.++|+++|.+|..+|++++|+++|++|++++|+|.+++..++.|
T Consensus 75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888876
No 41
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.82 E-value=2e-19 Score=163.31 Aligned_cols=128 Identities=34% Similarity=0.500 Sum_probs=102.1
Q ss_pred CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEE
Q 008689 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL 346 (557)
Q Consensus 269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v 346 (557)
+.++.++++++|.|. .|..|+.|+|||++++. +|++|+++.. .+.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus 48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v 124 (180)
T 2f4e_A 48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124 (180)
T ss_dssp ETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEE
T ss_pred CCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEE
Confidence 457999999999995 89999999999999998 5999998753 468999999999 999999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCceEEEEEEEeeeeeccc---ccCCChHHHHHHHh
Q 008689 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAAG 400 (557)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a~ 400 (557)
.|++.++||..+... ...||++++++|+|+|+++....+ .|.|+.+|+++.|.
T Consensus 125 ~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A~ 180 (180)
T 2f4e_A 125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD 180 (180)
T ss_dssp EECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC----------------
T ss_pred EECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhcC
Confidence 999999999987632 236999999999999999998777 89999999988763
No 42
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.81 E-value=2.6e-19 Score=153.85 Aligned_cols=110 Identities=39% Similarity=0.607 Sum_probs=101.9
Q ss_pred CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (557)
Q Consensus 268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~ 347 (557)
.|.++.++++++|+|...|..|+.|+|||++++.||++|+++.. .+.|++|.+|.+.+|+||+.+|..|++||++.|.
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ 94 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD--RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 94 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence 68899999999999977899999999999999999999998642 4679999999999999999999999999999999
Q ss_pred EcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (557)
Q Consensus 348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~ 382 (557)
+++.++||..+.. ..|||+++|+|+|+|.++.
T Consensus 95 ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 95 CKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred EChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence 9999999999875 3799999999999999886
No 43
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=163.06 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCcceeEEEEeCCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEE
Q 008689 268 DDKKVIKKILKEGDGFE-RPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (557)
Q Consensus 268 ~d~~~~kkil~~G~g~~-~p~~~~~v~v~~~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~ 344 (557)
.+.++.|+||++|.|.. .+..|++|+|||+++|.| |++||+++. +++|++|.+|.+++|+||+.+|.+|++||++
T Consensus 8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~ 85 (165)
T 2lkn_A 8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEIA 85 (165)
T ss_dssp HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence 46679999999999953 235799999999999965 999998864 6899999999999999999999999999999
Q ss_pred EEEEcCCCccC
Q 008689 345 LLTIAPEYAFG 355 (557)
Q Consensus 345 ~v~i~~~~~yg 355 (557)
.|+|+|+++||
T Consensus 86 ~~~ipp~laYG 96 (165)
T 2lkn_A 86 QFLCDIKHVVL 96 (165)
T ss_dssp EEECCHHHHSS
T ss_pred EEEECHHHhcC
Confidence 99999999999
No 44
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.80 E-value=4.5e-19 Score=147.68 Aligned_cols=102 Identities=26% Similarity=0.515 Sum_probs=94.4
Q ss_pred ceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCC
Q 008689 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229 (557)
Q Consensus 154 ~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~ 229 (557)
++.++++++|+|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++++.|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 367889999999656999999999999999999999987 6999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 230 GFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 230 ~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
|||+.+.+ +.|||+++|+|+|+|+++
T Consensus 81 ayG~~~~~-----~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 81 AYGATGHP-----GIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred ccCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence 99998875 579999999999999886
No 45
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=157.27 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=99.1
Q ss_pred ccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCC
Q 008689 150 CKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~ 228 (557)
..++.+.++++++|+|. ..+..||.|+++|++++.+|++|++++|+.|.+|.+++++||+++|.+|++|++++|.|||+
T Consensus 40 ~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~ 119 (157)
T 2jwx_A 40 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSK 119 (157)
T ss_dssp SSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGG
T ss_pred CCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECch
Confidence 34555579999999983 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccce
Q 008689 229 YGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV 263 (557)
Q Consensus 229 ~~~g~~g-~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 263 (557)
+|||+.| .+ +.|||+++|+|+|+|+++...
T Consensus 120 ~aYG~~g~~~-----~~IPp~stLiF~VeL~~i~~~ 150 (157)
T 2jwx_A 120 YCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDL 150 (157)
T ss_dssp GTTTTTCCSS-----SCCCTTCCEEEEEEEEEEEEC
T ss_pred hcCCcccccC-----CCcCCCCeEEEEEEEEEEEcc
Confidence 9999988 43 579999999999999998653
No 46
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.79 E-value=5.5e-19 Score=149.66 Aligned_cols=108 Identities=28% Similarity=0.411 Sum_probs=99.3
Q ss_pred cccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecC
Q 008689 149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227 (557)
Q Consensus 149 ~~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~ 227 (557)
+..++.+.++++++|+|. ..+..+|.|++||++++.+|+.|++++|+.|.+|.+++++||+++|.+|++|+++.+.|||
T Consensus 9 ~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~ 88 (118)
T 2awg_A 9 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS 88 (118)
T ss_dssp SSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECG
T ss_pred ECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEECh
Confidence 445666899999999984 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 228 ~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
++|||+.+.+ +.|||+++|+|+|+|+++.
T Consensus 89 ~~ayG~~~~~-----~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 89 KYCYGPQGRS-----PYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp GGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred HHccCCCCCC-----CccCCCCeEEEEEEEEEec
Confidence 9999998875 5799999999999999874
No 47
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.79 E-value=6.7e-19 Score=148.03 Aligned_cols=105 Identities=25% Similarity=0.439 Sum_probs=96.7
Q ss_pred cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (557)
Q Consensus 151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp 226 (557)
.+.++.++++++|+|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.+.||
T Consensus 4 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip 83 (113)
T 1yat_A 4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP 83 (113)
T ss_dssp CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred CCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEEC
Confidence 346788999999999555999999999999999999999987 6899999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
|++|||+.+.+ +.|||+++|+|+|+|+++
T Consensus 84 ~~~ayG~~~~~-----~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 84 GPYAYGPRGFP-----GLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred HHHCcCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence 99999998875 579999999999999986
No 48
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.78 E-value=1.5e-18 Score=149.11 Aligned_cols=105 Identities=29% Similarity=0.479 Sum_probs=95.3
Q ss_pred cccceeee--eeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEE
Q 008689 151 KDGGIIKK--ILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224 (557)
Q Consensus 151 ~d~~~~~~--i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~ 224 (557)
.+.++.++ ++++|+|...+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.
T Consensus 20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ 99 (130)
T 2lgo_A 20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99 (130)
T ss_dssp SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 45566666 9999999655999999999999999999999987 68999999999999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 225 vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
|||++|||+.+.+ +.|||+++|+|+|+|+++
T Consensus 100 ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 100 IPYQLAYGERGYP-----PVIPPKATLVFEVELLAV 130 (130)
T ss_dssp ECTTTSTTTTCCS-----TTSCSSCCEEEEEEEEEC
T ss_pred ECcHHHCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence 9999999998875 579999999999999874
No 49
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=148.81 Aligned_cols=109 Identities=28% Similarity=0.432 Sum_probs=98.8
Q ss_pred ccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeC-CCeEeeec------cceEEEecCCCCCchHHHHHhhccCCc
Q 008689 148 DICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLE-DGMVVGKA------DGVEFTVKDGHFCPTLAKAVKTMKKGE 219 (557)
Q Consensus 148 d~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~-~g~~~~~~------~~~~~~~g~~~~~~gl~~~l~~m~~Ge 219 (557)
....+.++.++++++|.+ ...+..+|.|++||+++++ +|++|+++ +|+.|.+|.+++++||+++|.+|++|+
T Consensus 7 ~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 86 (125)
T 4dip_A 7 ALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE 86 (125)
T ss_dssp GGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred eEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence 345678889999999873 3789999999999999999 99999976 689999999999999999999999999
Q ss_pred EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689 220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (557)
Q Consensus 220 ~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (557)
++.|.|||++|||+.|. +.|||+++|+|+|+|+++..
T Consensus 87 ~~~~~ip~~~aYG~~g~------~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 87 KRKLIIPPALGYGKEGK------GKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp EEEEEECGGGTTTTTCB------TTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEEChHHhcCCCCC------CCCCCCCeEEEEEEEEEEEc
Confidence 99999999999999885 37999999999999999854
No 50
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.78 E-value=1.3e-18 Score=149.90 Aligned_cols=105 Identities=30% Similarity=0.509 Sum_probs=97.2
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
..+.++.++++++|+| ..+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus 25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i 103 (133)
T 2y78_A 25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI 103 (133)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence 4567888999999998 68999999999999999999999986 689999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
||++|||+.+.+ +.|||+++|+|+|+|+++
T Consensus 104 p~~~aYG~~~~~-----~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 104 PPQLGYGARGAG-----GVIPPNATLVFEVELLDV 133 (133)
T ss_dssp CGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred CcHHhCCCCCCC-----CCCCCCCeEEEEEEEEEC
Confidence 999999998875 579999999999999874
No 51
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=152.31 Aligned_cols=115 Identities=29% Similarity=0.496 Sum_probs=97.6
Q ss_pred ceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK 340 (557)
Q Consensus 262 ~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~ 340 (557)
.+.+++.+.++.++++++|.|. .+..|+.|+|||++++. +|++|+++.. ...|++|.+|.+.+|+||+.+|..|++
T Consensus 18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~ 94 (134)
T 3b7x_A 18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR 94 (134)
T ss_dssp TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence 4567788999999999999995 57789999999999998 6999987642 467999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (557)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~ 382 (557)
||++.|.|+++++||..+..+ .|||++++.|+|+|+++.
T Consensus 95 Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 95 GELARFLFKPNYAYGTLGCPP---LIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp TCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred CCEEEEEECHHHCcCCCCCCC---CcCcCCeEEEEEEEEEEe
Confidence 999999999999999987653 599999999999999875
No 52
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.78 E-value=3.7e-18 Score=147.01 Aligned_cols=115 Identities=38% Similarity=0.637 Sum_probs=101.9
Q ss_pred eeeeCCcceeEEEEeCC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689 264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK 340 (557)
Q Consensus 264 ~d~~~d~~~~kkil~~G-~g-~~~p~~~~~v~v~~~~~l-~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~ 340 (557)
.+++.++.++++++++| .| ...|..|+.|+|||++++ .+|++|+++.. ...|++|.+|.+.+++||+.+|..|++
T Consensus 10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~ 87 (129)
T 2vn1_A 10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRK 87 (129)
T ss_dssp EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence 34567899999999987 55 267999999999999999 79999998652 468999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (557)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~ 383 (557)
||++.|.|++.++||..+..+ .|||+++++|+|+|+++..
T Consensus 88 Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 88 NEKCLVRIESMYGYGDEGCGE---SIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp TCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred CCEEEEEEChHHcCCCCCCCC---CcCCCCeEEEEEEEEEEec
Confidence 999999999999999987643 5999999999999998874
No 53
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.77 E-value=4.2e-18 Score=174.48 Aligned_cols=155 Identities=35% Similarity=0.599 Sum_probs=136.2
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (557)
+.++..+.+..++..|+.+++.++|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 5788899999999999999999999999999999999876531 112233344566778889999999999999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|++||+++|++.++|+++|.+|..+++|++|+++|++|++++|++..+...+..+..++.+.++++++.|++||+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 54
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.77 E-value=1.5e-18 Score=160.71 Aligned_cols=104 Identities=23% Similarity=0.378 Sum_probs=96.7
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCC
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~ 228 (557)
..+.++.++++.+|+| ..|..+|.|+++|++++.+|++|+++ +|+.|.+| ++|+||+++|.+|++|++++|+|||+
T Consensus 114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~ 190 (219)
T 3oe2_A 114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSD 190 (219)
T ss_dssp ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECch
Confidence 4678899999999998 68999999999999999999999987 78888887 89999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 229 YGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 229 ~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
+|||+.|.+ +.|||+++|+|+|+|+++.
T Consensus 191 lAYG~~g~~-----~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 191 QAYGAEGAG-----DLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp GTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred hcCCCCCCC-----CCCCCCCeEEEEEEEEEEe
Confidence 999999875 5799999999999999874
No 55
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=151.17 Aligned_cols=110 Identities=27% Similarity=0.398 Sum_probs=100.6
Q ss_pred cccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecC
Q 008689 149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227 (557)
Q Consensus 149 ~~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~ 227 (557)
+..++.+.++++++|+|. ..+..||.|++||++++.+|+.|++++|+.|.+|.+++++||+++|.+|++|++++|.|||
T Consensus 13 ~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~ 92 (135)
T 2d9f_A 13 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS 92 (135)
T ss_dssp SSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECH
T ss_pred ECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEECh
Confidence 445666899999999983 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccce
Q 008689 228 QYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV 263 (557)
Q Consensus 228 ~~~~g~~g-~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 263 (557)
++|||+.+ .+ +.|||+++|+|+|+|+++...
T Consensus 93 ~~aYG~~~~~~-----~~Ip~~~~l~f~vel~~v~~~ 124 (135)
T 2d9f_A 93 KYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDR 124 (135)
T ss_dssp HHHTCTTCCSS-----SCCCTTCCEEEEEEEEEEESS
T ss_pred hHccCcCCcCC-----CccCCCCeEEEEEEEEEeecC
Confidence 99999987 43 579999999999999998753
No 56
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.75 E-value=8.2e-19 Score=155.86 Aligned_cols=131 Identities=22% Similarity=0.335 Sum_probs=99.7
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
.++.||.|.|||++++.||++||+|+..++|+.|.+|.+++|+||+++|.||++|++++|.|||++|||+++
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------- 95 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------- 95 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 688999999999999999999999987668999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEEEeeeccccccccceeeeee-eccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689 132 ATLQFDVELLSWTSVKDICKDGGIIKKIL-KEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA 192 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~-~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (557)
..+++.+....|.....+ ..+...... ..|. +..+-..++.|++|+||+|++.++.+.-
T Consensus 96 ~~lv~~vp~~~f~~~~~~--~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v 158 (169)
T 4dt4_A 96 PDLIQYFSRREFMDAGEP--EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI 158 (169)
T ss_dssp GGGEEEEEGGGGTTTCCC--CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred hHHEEEeCHHHCCCcCCC--CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEE
Confidence 566666665554321111 111111111 1121 1222335689999999999999887754
No 57
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.4e-18 Score=149.67 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCC
Q 008689 51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP 129 (557)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip 129 (557)
..++.||.|++||++++. ||++|++|+.. .|+.|.+|.+++++||+++|.||++|++++|.|||++|||+++
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------ 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------ 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence 568899999999999998 99999999863 7999999999999999999999999999999999999999886
Q ss_pred CCCcEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689 130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA 192 (557)
Q Consensus 130 ~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (557)
..+++.+....+ ....+ ..+..+..-...|. +..+-..++.|++++||+|++.++.++-
T Consensus 78 --~~~v~~v~~~~f-~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v 139 (151)
T 2kr7_A 78 --SSYLQEVPRDQF-EGIEL-EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRF 139 (151)
T ss_dssp --SCEEEEEEGGGG-TTSCC-CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEE
T ss_pred --cceEEEEcHHHc-CCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEE
Confidence 567777776655 11111 11111111111121 1123335689999999999999987764
No 58
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.75 E-value=1.2e-17 Score=155.17 Aligned_cols=107 Identities=30% Similarity=0.503 Sum_probs=98.9
Q ss_pred ccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEE
Q 008689 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (557)
Q Consensus 148 d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i 223 (557)
....+.++.++++.+|+| ..+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++++
T Consensus 99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v 177 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL 177 (209)
T ss_dssp CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence 345678899999999998 55999999999999999999999987 6899999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
.|||++|||+.|.+ +.|||+++|+|+|+|+++
T Consensus 178 ~Ipp~~aYG~~g~~-----~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 178 TIPPQLGYGARGAA-----GVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred EECcHHhCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence 99999999999875 579999999999999874
No 59
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.74 E-value=2e-17 Score=147.65 Aligned_cols=121 Identities=26% Similarity=0.408 Sum_probs=103.7
Q ss_pred CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (557)
Q Consensus 268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~ 347 (557)
-+.++.++++++|.|...|..|+.|+|||.+++.||++|+++.. ++.|++|.+ +.+|+||+.+|..|++||++.|.
T Consensus 35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~ 110 (167)
T 1jvw_A 35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRP--NEVIKGWTEALQLMREGDRWRLF 110 (167)
T ss_dssp CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEE
Confidence 35679999999999964499999999999999999999998642 457999999 48999999999999999999999
Q ss_pred EcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHH
Q 008689 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397 (557)
Q Consensus 348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~ 397 (557)
|++.++||..+.. ..|||+++++|+|+|+++.+. .+.++.++..+
T Consensus 111 Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~ 155 (167)
T 1jvw_A 111 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE 155 (167)
T ss_dssp ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred ECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence 9999999998764 369999999999999999853 45566665443
No 60
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.74 E-value=9.9e-19 Score=153.91 Aligned_cols=130 Identities=26% Similarity=0.378 Sum_probs=97.9
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCceEEEccCCcccHHHHHHHcccccccEEEEEecCCccc
Q 008689 53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY 119 (557)
Q Consensus 53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~-------------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ay 119 (557)
++.||.|+|||++++ ||++||+|+.. ++|+.|.+|.+++++||++||.||++|++++|+|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 678999999999999 99999999752 3799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689 120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (557)
Q Consensus 120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (557)
|+++ ..++..+....+... ++....+..... ....+..+-..++.|++++||+|++.++.++-+
T Consensus 81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~~~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~ 144 (157)
T 3pr9_A 81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTITI-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIK 144 (157)
T ss_dssp CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEEEE-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEEEe-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEEE
Confidence 9987 456666655444321 111111111111 111233344466899999999999999877653
No 61
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.74 E-value=4.9e-18 Score=146.02 Aligned_cols=110 Identities=19% Similarity=0.342 Sum_probs=97.1
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhh------ccCCc
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE 219 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge 219 (557)
..+.++.++++.+|+| ..+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+ |++|+
T Consensus 9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge 87 (129)
T 1u79_A 9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG 87 (129)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence 3567889999999998 67999999999999999999999986 6899999999999999999998 99999
Q ss_pred EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 220 ~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
++++.|||++|||+.+.+..+..+.|||+++|+|+|+|+++
T Consensus 88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999999875311122479999999999999875
No 62
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.74 E-value=1.4e-18 Score=161.94 Aligned_cols=168 Identities=23% Similarity=0.315 Sum_probs=114.1
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCceEEEccCCcccHHHHHHHcccccccEEEEEecCCccc
Q 008689 53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY 119 (557)
Q Consensus 53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~-------------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ay 119 (557)
++.||.|.|||++++ ||++||+|+.. +.|+.|.+|.+++++||++||.||++|++++|+|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 678999999999999 99999999752 3799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEEe
Q 008689 120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV 199 (557)
Q Consensus 120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~ 199 (557)
|+++ ..++..+....+... ++....+..... ....+..+-..++.|++|+||+|++.++.+.-+-....-
T Consensus 81 Ge~~--------~~lv~~vp~~~f~~~-~~~~~vG~~~~~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~e 150 (231)
T 3prb_A 81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTITI-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD 150 (231)
T ss_dssp CCCC--------GGGEEEEETHHHHTT-TCCCCTTCEEEE-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECC
T ss_pred CCCC--------hHHEEecCHHHCCcc-cCCCCCCcEEEe-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEec
Confidence 9987 455555554444211 111111111111 111122334456899999999999999887654333322
Q ss_pred cCCCCCchHHHHHhh----cc---CCcEEEEEecCCCcc
Q 008689 200 KDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGF 231 (557)
Q Consensus 200 g~~~~~~gl~~~l~~----m~---~Ge~~~i~vp~~~~~ 231 (557)
...+-+.+|-.-..+ |+ .++++.|.+|+.+.|
T Consensus 151 at~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~ 189 (231)
T 3prb_A 151 DKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPF 189 (231)
T ss_dssp SHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGG
T ss_pred CCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhh
Confidence 222222222222221 22 467888888988655
No 63
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.73 E-value=6.1e-19 Score=155.15 Aligned_cols=131 Identities=23% Similarity=0.398 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcc
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~-------------~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~a 118 (557)
+++.||.|++||++++.||++|++|+. ...|+.|.+|.+++++||++||.||++|++++|+|||++|
T Consensus 1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a 80 (151)
T 1ix5_A 1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA 80 (151)
T ss_dssp CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence 367899999999999889999999963 2379999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (557)
Q Consensus 119 yg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (557)
||+++ ..+++.+.+..+... +.....+....... -.+..+-..++.|++||||+|++.++.++-
T Consensus 81 YG~~~--------~~~v~~v~~~~f~~~-~~~~~~G~~~~~~~-~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v 144 (151)
T 1ix5_A 81 YGNRN--------EMLIQKIPRDAFKEA-DFEPEEGMVILAEG-IPATITEVTDNEVTLDFNHELAGKDLVFTI 144 (151)
T ss_dssp SCSCC--------STTBCCEETHHHHTS-TTCCCTTEEEESSS-CEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred CCCCC--------ccEEEEEEHHHcCcc-CCcccccCEEEECC-eEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence 99976 455666666555320 11111111110000 111122334589999999999999987754
No 64
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.72 E-value=2.4e-17 Score=152.81 Aligned_cols=104 Identities=28% Similarity=0.464 Sum_probs=95.5
Q ss_pred ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (557)
Q Consensus 150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (557)
..+.++.++++.+|+| ..|..||.|++||++++.+|++|+++ .|+.|.+ +++++||+++|.+|++|++++|+|
T Consensus 103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I 179 (213)
T 1fd9_A 103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV 179 (213)
T ss_dssp ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence 4567889999999998 78999999999999999999999987 6888888 589999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
||++|||+.|.+ +.|||+++|+|+|+|+++.
T Consensus 180 P~~laYG~~g~~-----~~Ipp~stLiF~VeLl~v~ 210 (213)
T 1fd9_A 180 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 210 (213)
T ss_dssp CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEE
T ss_pred CchhccCccCCC-----CCCCCCCeEEEEEEEEEEE
Confidence 999999998864 5799999999999999985
No 65
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.72 E-value=7.7e-18 Score=153.54 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=98.0
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (557)
Q Consensus 53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~ 132 (557)
++.||.|+|+|++++.||++|++|+.. +|+.|.+|.+++||||+++|.+|++|++++|+|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~--------~ 73 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E 73 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC--------T
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC--------h
Confidence 678999999999998899999999864 7999999999999999999999999999999999999999876 4
Q ss_pred cEEEEEEEEEeeeccccccccceeeeeeecc--ccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (557)
Q Consensus 133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (557)
.+++.|....|.....+. .+..+......| .+..+-..++.|+++||++|++.++.|+-
T Consensus 74 ~lV~~vp~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v 134 (196)
T 2kfw_A 74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNV 134 (196)
T ss_dssp TTCEEECGGGCCCSSCCC-TTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEE
T ss_pred hhEEEEEHHHCCCccCcc-cCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence 455555555443211111 111111111111 11244456789999999999999887654
No 66
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=136.23 Aligned_cols=91 Identities=25% Similarity=0.445 Sum_probs=84.8
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008689 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE 242 (557)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~ 242 (557)
..++.||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++++.|||++|||+.+.+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~----- 78 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP----- 78 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence 56889999999999999999999986 689999999999999999999999999999999999999998765
Q ss_pred CCCCCCCeEEEEEEeecccc
Q 008689 243 GAVPPNATLQIALELVSWKT 262 (557)
Q Consensus 243 ~~ip~~~~l~~~v~l~~~~~ 262 (557)
+.|||+++|+|+|+|+++..
T Consensus 79 ~~Ip~~~~l~f~v~l~~v~~ 98 (102)
T 2pbc_A 79 PKIPGGATLVFEVELLKIER 98 (102)
T ss_dssp TTBCTTCCEEEEEEEEEEGG
T ss_pred CCcCcCCeEEEEEEEEEecc
Confidence 57999999999999999875
No 67
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.71 E-value=3.3e-17 Score=146.49 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=97.7
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (557)
Q Consensus 53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~ 132 (557)
++.||.|+|+|++++.||++|++|+.. +|+.|.+|.++++|||+++|.||++|++++|.|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~--------~ 73 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E 73 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC--------T
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC--------h
Confidence 678999999999998899999999864 7999999999999999999999999999999999999999886 4
Q ss_pred cEEEEEEEEEeeeccccccccceeeeeeeccc--cccCCCCCCeEEEEEEEEeCCCeEeeeccce
Q 008689 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE--KWENPKDLDEVLVNYEARLEDGMVVGKADGV 195 (557)
Q Consensus 133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~--g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~ 195 (557)
.+++.|....|.....+. .+..+......|. +..+-..++.|++++|++|++.++.++-+-.
T Consensus 74 ~~v~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~ 137 (171)
T 2k8i_A 74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVV 137 (171)
T ss_dssp TSEEEEEGGGGTTSSCCC-TTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEE
T ss_pred hhEEEeeHHHCCcccCcc-CCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEE
Confidence 455666554443211111 1111111001110 1122234589999999999999988765433
No 68
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=8.5e-17 Score=138.41 Aligned_cols=115 Identities=24% Similarity=0.355 Sum_probs=100.9
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
..+.|..+++.|+.+|+.|+|++|+.+|++|+++.|.+. .+|+|+|.||+++++|++|+.+|+++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------------~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------------TFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 456788999999999999999999999999999987543 34899999999999999999999999
Q ss_pred HccCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 475 LDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 475 l~~~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
|+++|++ .++|+++|.+|..+++|++|++.|++++++.|+ +++...+..+
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 9998876 468999999999999999999999999999986 4444444443
No 69
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.69 E-value=1.3e-16 Score=149.02 Aligned_cols=101 Identities=33% Similarity=0.658 Sum_probs=92.6
Q ss_pred cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (557)
Q Consensus 151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp 226 (557)
.+.++.++++.+|+| ..|..||.|++||++++.+|++|+++ .|+.|.+ +++|+||+++|.+|++|++++|+||
T Consensus 119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP 195 (224)
T 1q6h_A 119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP 195 (224)
T ss_dssp CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence 457888999999998 68999999999999999999999987 5888888 5899999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (557)
Q Consensus 227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (557)
|+++||+.+.+ + |||+++|+|+|+|+++
T Consensus 196 ~~laYG~~g~~-----~-IPp~stLiF~VeL~~i 223 (224)
T 1q6h_A 196 PELAYGKAGVP-----G-IPPNSTLVFDVELLDV 223 (224)
T ss_dssp GGGTTTTTCBT-----T-BCTTCCEEEEEEEEEE
T ss_pred chhhcCcCCCC-----C-CCCCCEEEEEEEEEEe
Confidence 99999998764 3 9999999999999986
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.4e-16 Score=134.84 Aligned_cols=118 Identities=24% Similarity=0.302 Sum_probs=109.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|+.+++.|+|++|+..|.+|+++.|.+. .++.|+|.||+++++|++|+.+|+++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999977543 3489999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------p~n~~~~~~l~~l~~~~ 529 (557)
++|++..+++++|.+|..+|++++|+..|+++++++ |++..+...+..+..++
T Consensus 67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 99999999988886654
No 71
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.65 E-value=1.5e-16 Score=140.52 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=96.2
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (557)
Q Consensus 53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~ 132 (557)
++.||.|++||+++ .||++|++|+ +.|.+|.++++|||+++|.||++|++++|.|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~ 68 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P 68 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence 67899999999999 8999999996 89999999999999999999999999999999999999886 5
Q ss_pred cEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeeccc
Q 008689 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (557)
Q Consensus 133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~ 194 (557)
.+++.|.+..+.....+. .+..+......|. +..+-..++.|++++|++|++.++.++-+-
T Consensus 69 ~lv~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev 132 (158)
T 3cgm_A 69 EGVQVVPLSAFPEDAEVV-PGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEV 132 (158)
T ss_dssp GGEEEEEGGGSCTTSCCC-TTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEE
T ss_pred ceEEEEEHHHCCCCCCCc-cCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEE
Confidence 677888776664211111 1111111111111 112333568999999999999998776543
No 72
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.63 E-value=3.6e-16 Score=130.28 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=75.7
Q ss_pred cCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCC
Q 008689 48 EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127 (557)
Q Consensus 48 ~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ 127 (557)
++ ..++.||.|.|+|++++ ||++|++++ .+|+.|.+|.+++||||+++|.||++|++++|.||+...||..+.
T Consensus 26 ~~-~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~--- 98 (113)
T 1hxv_A 26 SD-KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL--- 98 (113)
T ss_dssp ----CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred CC-CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence 35 57899999999999998 999999996 489999999999999999999999999999999974444998763
Q ss_pred CCCCCcEEEEEEEEEe
Q 008689 128 IPPNATLQFDVELLSW 143 (557)
Q Consensus 128 ip~~~~l~~~v~l~~~ 143 (557)
++++++|+|+|+++
T Consensus 99 --~g~~l~F~V~l~~V 112 (113)
T 1hxv_A 99 --QSKPVTFEVVLKAI 112 (113)
T ss_dssp --GSCCCEEEEEECCB
T ss_pred --CCCEEEEEEEEEEE
Confidence 56999999999876
No 73
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=2.5e-15 Score=134.96 Aligned_cols=122 Identities=24% Similarity=0.231 Sum_probs=108.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|+.+++.|+|++|+..|.+|+++.+.+. .+++|+|.||+++++|++|+.+|++++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999987543 3488999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--VKLEYKTLKEKMKEYN 533 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~--~~~~l~~l~~~~~~~~ 533 (557)
++|++..+|+++|.+|..+|++++|+.+|+++++++|++.. +...+..++.++.+..
T Consensus 74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 5556666666655443
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=4.8e-15 Score=131.40 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=99.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
++.+..+...|..+++.|+|++|+..|++++.+.|.+.. +++|+|.||.++++|++|+.+|++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------------~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------------YIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345778899999999999999999999999999886553 38899999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
.++|+++.+|+++|.||..+|++++|+..|++|+++.|++.
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999875
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=1.4e-14 Score=126.79 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=108.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..+++.|+|++|+..|.+++...|.+.. ++.++|.||.++++|++|+.++++++.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------------YFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34667889999999999999999999999998775543 388999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
++|+++.+++++|.+|..+|++++|++.|+++++++|+++.......++...+...++
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988766666666665554443
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=1e-14 Score=128.86 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=105.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..+++.|+|++|+..|.+++...|.+.. +++++|.||..+++|++|+.+|++++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------------FFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45677889999999999999999999999998876543 378999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
++|+++.+++++|.+|..+|++++|++.|+++++++|+++.......++...+.
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765555555544443
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=1.1e-14 Score=128.84 Aligned_cols=115 Identities=13% Similarity=0.035 Sum_probs=101.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+....+...|..+++.|+|++|+..|++|+++.|.+.. +|.++|.||.+++++++|+.+++++++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------------AHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 44666788999999999999999999999999876543 488999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~-~~~al~l~p~n~~~~~~l~~l~ 526 (557)
++|+++.+++++|.+|..++++++|.+. +++|++++|+|+.+.....++.
T Consensus 94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999887765 5999999999998877766654
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=1.3e-14 Score=125.28 Aligned_cols=121 Identities=29% Similarity=0.391 Sum_probs=109.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|.+|+...+.+. .+++++|.||..+++|++|+.++++++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 67788999999999999999999999999877543 348899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-----n~~~~~~l~~l~~~~~~~~~ 534 (557)
|++..+++++|.+|..+|++++|+..|+++++++|+ +..+...+..+..+.....+
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 77888888888766654443
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.54 E-value=1.3e-14 Score=128.45 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=101.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (557)
.|..+..++++++|+..|.+|+...+..... ++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5777888999999999999999887765544 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
|+++|.+|..+|++++|+..|++|++++|++..+...+..+...+.+..+
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999999999888776655443
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=2.7e-13 Score=126.82 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=107.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
+..+..+|..+++.|+|++|+..|.+++...|.+...... ...........+++++|.+|.++|+|++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999988754321000 000001122333455999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
+|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.....
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988887754443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=1.1e-13 Score=152.94 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=73.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
++.+..+.+.|+.+.++|+|++|+..|++|+++.|.... +|+|||.+|.++|+|++|+.++++||
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------------a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------------AHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778888888888888888888888888888765432 24455555555555555555555555
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
+++|++..+|+++|.+|..+|++++|++.|++|++++|++..+...+..+...+.+.++
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555555555555555555555555555555555444444443333
No 82
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=5.8e-13 Score=118.54 Aligned_cols=123 Identities=24% Similarity=0.395 Sum_probs=110.7
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (557)
.......+..+...|..++..|+|++|+..|.+++...+... .++.++|.|+..+++|++|+.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 356678899999999999999999999999999999876432 34889999999999999999999
Q ss_pred HHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 472 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
.+++.++|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877666664333
No 83
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=2.2e-13 Score=113.44 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=105.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+++...+.+. .++.++|.++.++++|++|+..+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999876542 34889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
+|++..+++++|.++..+|++++|++.|+++++++|++..+...+..+.+
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988888777643
No 84
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=7.3e-13 Score=112.29 Aligned_cols=122 Identities=30% Similarity=0.321 Sum_probs=109.5
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
+.....+..+...|..++..++|+.|+..|.+++...+... .++.++|.++..+++|++|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------------VYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 34556788899999999999999999999999999866432 347899999999999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888887776554
No 85
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.46 E-value=1.5e-13 Score=114.40 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=72.9
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008689 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG 243 (557)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp-~~~~~g~~g~~~~~~~~ 243 (557)
..++.||.|+++|++++ +|+.|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|| |.. ||..+.
T Consensus 28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~------- 98 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL------- 98 (113)
T ss_dssp -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------
T ss_pred CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------
Confidence 36788999999999999 99999987 8999999999999999999999999999999996 553 887653
Q ss_pred CCCCCCeEEEEEEeecc
Q 008689 244 AVPPNATLQIALELVSW 260 (557)
Q Consensus 244 ~ip~~~~l~~~v~l~~~ 260 (557)
++++|+|+|+|+++
T Consensus 99 ---~g~~l~F~V~l~~V 112 (113)
T 1hxv_A 99 ---QSKPVTFEVVLKAI 112 (113)
T ss_dssp ---GSCCCEEEEEECCB
T ss_pred ---CCCEEEEEEEEEEE
Confidence 47999999999876
No 86
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-13 Score=117.03 Aligned_cols=117 Identities=32% Similarity=0.557 Sum_probs=105.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..++|.+|+..|.++++..+.. .....++.++|.||.++++|++|+.+|++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 36778899999999999999999999999876532 123556889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
+|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888777764
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=7.2e-13 Score=112.94 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+++.|+|++|+..|.++++..|.+.. ...+++++|.||+++++|++|+.++++++..+|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999998775431 223578999999999999999999999999999
Q ss_pred CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
++ ..+++++|.+|..+|++++|+..|+++++..|++..+.....++..
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 99 8999999999999999999999999999999999877666665544
No 88
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=4.1e-13 Score=114.57 Aligned_cols=116 Identities=30% Similarity=0.386 Sum_probs=105.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..+++.++|++|+..|.++++..+.+. .++.++|.+|..+++|++|+.++++++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------------KLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467888999999999999999999999998765432 34889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
+|.+..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877776544
No 89
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=6.6e-13 Score=112.73 Aligned_cols=119 Identities=27% Similarity=0.338 Sum_probs=106.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+++...+.+. .+++++|.+|..+++|++|+.++++++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 467789999999999999999999999999866432 34889999999999999999999999999
Q ss_pred CCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689 478 DSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 478 ~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~ 532 (557)
+|.+ ..+++++|.+|..+|++++|++.|++++++.| +..+...+..+...+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 8877 99999999999999999999999999999999 677888888887766543
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=9.7e-13 Score=124.37 Aligned_cols=129 Identities=20% Similarity=0.280 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
..+...|..+++.|+|++|+..|.+++++.+ .+. .+++++|.||.++++|++|+.++++++..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999876 322 247789999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV-------KLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~-------~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
|++..+++++|.+|..+|++++|++.|+++++++|++... ...+..+...+.+.++... .|.+.+
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al 144 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHAT 144 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHT
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999844 5555555555444444332 444444
No 91
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=2.4e-13 Score=115.58 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+...|..+++.|+|++|+..|++|+...|.+.. +++++|.++..++++++|+..++++++++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4578899999999999999999999999876543 3889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
+..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999998753
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=5.3e-13 Score=147.59 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=112.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+.+.|+.+++.|+|++|+..|++|+++.|... .+|+|+|.+|.++++|++|+.+|++|++++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~---------------~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA---------------DAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999987644 348999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
|++..+|+++|.+|..+|++++|++.|++|++++|++..+...+..+...+.+..+..
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999999999999999999999999999999999988877766554433
No 93
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=5.2e-13 Score=125.81 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----------hCHHHHHHH
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAEKL 470 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~~~ 470 (557)
+...|..+++.|++++|+..|++|+++.|.+. .++.++|.++.++ |++++|+..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRYL---------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 44445555555555555555555554444322 2366777777777 777777777
Q ss_pred HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 471 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
++++++++|++..+++.+|.+|..+|++++|++.|++|++++ ++..+...+..+...+.+..+... .|++.+.
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 179 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKALE 179 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 777777777777777777777777777777777777777777 677777777776666665555442 5555544
No 94
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.42 E-value=7.3e-13 Score=116.32 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=73.2
Q ss_pred cCCCCCCeEEEEEEEEeC-CCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008689 167 ENPKDLDEVLVNYEARLE-DGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE 242 (557)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~ 242 (557)
..++.|+.|+++|++++. +|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.+.|||+.|||+.+
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------- 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------- 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence 456789999999999998 99999987 6999999999999999999999999999999999999999753
Q ss_pred CCCCCCCeEEEEEEeecc
Q 008689 243 GAVPPNATLQIALELVSW 260 (557)
Q Consensus 243 ~~ip~~~~l~~~v~l~~~ 260 (557)
..+++.+....|
T Consensus 78 ------~~~v~~v~~~~f 89 (151)
T 2kr7_A 78 ------SSYLQEVPRDQF 89 (151)
T ss_dssp ------SCEEEEEEGGGG
T ss_pred ------cceEEEEcHHHc
Confidence 457888888777
No 95
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.41 E-value=3.3e-13 Score=119.75 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008689 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243 (557)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~ 243 (557)
.++.|+.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~--------- 94 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP--------- 94 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC---------
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence 5778999999999999999999987 799999999999999999999999999999999999999975
Q ss_pred CCCCCCeEEEEEEeeccc
Q 008689 244 AVPPNATLQIALELVSWK 261 (557)
Q Consensus 244 ~ip~~~~l~~~v~l~~~~ 261 (557)
+..+++.+....|.
T Consensus 95 ----~~~lv~~vp~~~f~ 108 (169)
T 4dt4_A 95 ----SPDLIQYFSRREFM 108 (169)
T ss_dssp ----CGGGEEEEEGGGGT
T ss_pred ----ChHHEEEeCHHHCC
Confidence 44567777777774
No 96
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=1.2e-12 Score=128.58 Aligned_cols=102 Identities=31% Similarity=0.446 Sum_probs=95.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..++..|+.+++.|+|++|+..|.+|+...+.+. .+++|+|.||.++++|++|+.+++++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999877543 348899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
|++.++++++|.+|..+|++++|+..|++|++++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999976
No 97
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=4.5e-13 Score=117.67 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=92.1
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH----------HHHHHHHHHHHccCC
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----------KQAEKLCTKVLDLDS 479 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----------~~A~~~~~~al~~~p 479 (557)
-+.+.|++|+..|.+|+.+.|.+... ++|+|.+++.++++ ++|+..|++||+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea---------------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence 34577999999999999998876543 88999999999876 599999999999999
Q ss_pred CChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
++..|||++|.||..+| +|++|+++|++|++++|++...++.+..+.+.-
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 99999999999999985 899999999999999999987777776654444
No 98
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=1e-12 Score=134.77 Aligned_cols=79 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
+|+|+|.++.++++|++|+.+|+++|+++|++..+|+++|.++..+|++++|+++|+++++++|+|..++..+..+...
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666666666666666666666666666666666666666666555
No 99
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=4.5e-12 Score=115.35 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=116.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~ 459 (557)
+..+.+.|+.+++.|+|++|+..|++|+++.|.+... .++-..... .....++.++|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5567889999999999999999999999987754321 000000011 112455778888999
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...+.+.++... .
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~ 163 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-Y 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877776654 6
Q ss_pred HHHHhh
Q 008689 540 YGNMFA 545 (557)
Q Consensus 540 ~~~mf~ 545 (557)
|++.++
T Consensus 164 ~~~al~ 169 (184)
T 3vtx_A 164 FKKALE 169 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 100
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.39 E-value=3.6e-13 Score=118.39 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=69.1
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~ 231 (557)
++.||.|+++|++++ +|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 567899999999999 99999986 489999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 232 GEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 232 g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
|+.+. .++..+....|.
T Consensus 81 G~~~~-------------~~V~~v~~~~f~ 97 (157)
T 3pr9_A 81 GKRDP-------------SKIKLIPLSEFT 97 (157)
T ss_dssp CCCCG-------------GGEEEEEHHHHH
T ss_pred CCCCh-------------HhEEEcCHHHCC
Confidence 97654 355666665553
No 101
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=4.3e-12 Score=119.44 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (557)
Q Consensus 420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~ 499 (557)
..|.+|+..+.. ..+...-...+++++|.+|..+|++++|+..++++++++ +++.+++++|.+|..+|+++
T Consensus 98 g~~~~A~~~~~~--------al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 98 GYLEQALSVLKD--------AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHH--------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHH--------HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 555666655432 122223346678999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
+|+..|+++++++|++..+...+..+...+.+.++..
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999888888877766655443
No 102
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=2.7e-12 Score=131.64 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=98.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-HHHHHHHHHHHHc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKVLD 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-~~~A~~~~~~al~ 476 (557)
.+..+...|..+.+.|+|++|+..|++|+.+.|.+.. +|+++|.++.++++ |++|+.+|+++|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~---------------a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------------VWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH---------------HHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4566777888888888888888888888887775443 37788888888886 8888888888888
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
++|++..+|+++|.+|..+|++++|+.+|++|++++|+|..++..+..+...+.+.++.. ..|.+++
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl-~~~~~al 227 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL-QYVDQLL 227 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH-HHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence 888888888888888888888888888888888888888877777777766665544332 2444443
No 103
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.36 E-value=1.3e-12 Score=119.05 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i 245 (557)
++.++.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||+.+.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~--------- 73 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------- 73 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT---------
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh---------
Confidence 567899999999999899999987 79999999999999999999999999999999999999997543
Q ss_pred CCCCeEEEEEEeecccceeeeeCCcceeEEEEeCC--CCCCCCCCCCEEEEEEEEEecCCcEE
Q 008689 246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEG--DGFERPNEGAVVKVKLIGKLQDGTVF 306 (557)
Q Consensus 246 p~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G--~g~~~p~~~~~v~v~~~~~l~~g~~~ 306 (557)
.+++.|.+..|.... ....+..+.---..| .+...-..+++|+|.|+..|++.++.
T Consensus 74 ----~lV~~vp~~~f~~~~-~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~ 131 (196)
T 2kfw_A 74 ----NLVQRVPKDVFMGVD-ELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLK 131 (196)
T ss_dssp ----TTCEEECGGGCCCSS-CCCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCE
T ss_pred ----hhEEEEEHHHCCCcc-CcccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEE
Confidence 355666666663211 111222221100111 01122234566777777777655443
No 104
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.35 E-value=1e-12 Score=110.68 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=83.5
Q ss_pred HcCcHHHHHHHHHHHHHH---hhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689 411 KAGKYARASKRYEKAVKY---IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 411 ~~~~y~~A~~~y~~Al~~---~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
..|+|++|+..|.+|++. .+. ...++.++|.+|.++++|++|+.+++++++++|++..++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 368899999999999987 332 33458899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
+|.+|..+|++++|+..|++++.++|++..+....
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999999998765433
No 105
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=1.6e-12 Score=137.61 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=108.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
.+.+..+...|+.+++.|+|++|+..|++|+++.+... .+++|+|.||.++++|++|+.++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35678889999999999999999999999999876542 348899999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+++|++..+++++|.+|..+|++++|++.|++|++++|++..+...+..+...+
T Consensus 68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 121 (477)
T 1wao_1 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121 (477)
T ss_dssp HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888888774444
No 106
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.35 E-value=1.8e-11 Score=102.66 Aligned_cols=114 Identities=32% Similarity=0.418 Sum_probs=103.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..++|++|+..|.+++...+... .++.++|.++.+++++++|+..+++++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56678899999999999999999999998765322 247899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
|.+..+++.+|.+|..+|++++|+..|++++.++|++..+...+..+..
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887776654
No 107
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.35 E-value=2.4e-13 Score=119.39 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=70.6
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~ 231 (557)
++.||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++++.|||++||
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 568899999999999999999986 489999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689 232 GEKGKSASGNEGAVPPNATLQIALELVSWK 261 (557)
Q Consensus 232 g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (557)
|+.+. .+++.+.+..|.
T Consensus 82 G~~~~-------------~~v~~v~~~~f~ 98 (151)
T 1ix5_A 82 GNRNE-------------MLIQKIPRDAFK 98 (151)
T ss_dssp CSCCS-------------TTBCCEETHHHH
T ss_pred CCCCc-------------cEEEEEEHHHcC
Confidence 97643 456667777664
No 108
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.32 E-value=4.2e-11 Score=106.86 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i 245 (557)
++.|+.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||+.+.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~--------- 73 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------- 73 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT---------
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh---------
Confidence 567899999999999999999987 69999999999999999999999999999999999999997643
Q ss_pred CCCCeEEEEEEeeccc
Q 008689 246 PPNATLQIALELVSWK 261 (557)
Q Consensus 246 p~~~~l~~~v~l~~~~ 261 (557)
.+++.+.+..|.
T Consensus 74 ----~~v~~v~~~~f~ 85 (171)
T 2k8i_A 74 ----NLVQRVPKDVFM 85 (171)
T ss_dssp ----TSEEEEEGGGGT
T ss_pred ----hhEEEeeHHHCC
Confidence 456677776664
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2.2e-11 Score=110.75 Aligned_cols=118 Identities=15% Similarity=0.054 Sum_probs=91.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-H------HHHHHHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-K------KQAKALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-~------~~~~~~~~~~~~nla~~~~ 459 (557)
+..+...|..+++.|++++|+..|.+++...+..... ..+. . .........++.++|.+|.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4556677777888888888888888777665432211 0000 0 0111112456889999999
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
++++|++|+..++++++++|.++.+++++|.+|..+|++++|++.|++|++++|++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999999999999999999999999999999999999999874
No 110
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.31 E-value=2e-12 Score=120.41 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=62.3
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~ 231 (557)
++.||.|++||++++ +|++|+++ +|+.|.+|.|++++||+++|.+|++|+++++.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 567899999999999 99999986 389999999999999999999999999999999999999
Q ss_pred CCCCC
Q 008689 232 GEKGK 236 (557)
Q Consensus 232 g~~g~ 236 (557)
|+.+.
T Consensus 81 Ge~~~ 85 (231)
T 3prb_A 81 GKRDP 85 (231)
T ss_dssp CCCCG
T ss_pred CCCCh
Confidence 97654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.30 E-value=1.4e-11 Score=114.83 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=110.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|+.++..|+|++|+..|.+++.. ...+++++|.+|.++++|++|+.++++++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999998511 123588999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKEAKFY 540 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----------------~~~~~l~~l~~~~~~~~~~~~~~~ 540 (557)
++|++..+++++|.+|..+|++++|++.|++++++.|++. .+...+..+...+.+..+... .|
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~ 144 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QL 144 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HH
Confidence 9999999999999999999999999999999999999876 788888888777766655543 45
Q ss_pred HHHhh
Q 008689 541 GNMFA 545 (557)
Q Consensus 541 ~~mf~ 545 (557)
.+.+.
T Consensus 145 ~~al~ 149 (213)
T 1hh8_A 145 ALATS 149 (213)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.7e-11 Score=114.52 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=91.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
..|..+++.|+|++|+..|++|+++.|.+. .+++++|.+|..+|+|++|+.+|+++++++|++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 399999999999999999999999987654 34889999999999999999999999999999998
Q ss_pred HHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQ-----------------------------------MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 484 a~~~~g~a~~~-----------------------------------lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
+++++|.+|.. +++|++|+.+|++|++++|++ .+...+.++.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 88888777643 356889999999999999975 3445555553
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.30 E-value=1.5e-12 Score=115.20 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=88.9
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
..++++|.+++++|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|++.|++|++++|++..+...+..+...
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008689 529 MKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~~ 546 (557)
+.+.++... .|.+....
T Consensus 117 lg~~~eA~~-~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKE-CFELVIQH 133 (151)
T ss_dssp TTCHHHHHH-HHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHHh
Confidence 888777664 66666554
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.30 E-value=1.4e-11 Score=105.32 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=88.6
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
....+.|+|.+|+++|+|++|+.+++++|+++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008689 527 EKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 527 ~~~~~~~~~~~~~~~~mf~ 545 (557)
..+.+..+... .|++.+.
T Consensus 92 ~~~~~~~~A~~-~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQR-AYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHH-HHHHHHH
T ss_pred HHCCCHHHHHH-HHHHHHH
Confidence 88887776654 6666554
No 115
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=2.6e-11 Score=114.42 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=104.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+++.|+|++|+..|.+|++..|.. ..++.++|.+|.++++|++|+..++++++++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 345668999999999999999999999876643 34488999999999999999999999999999
Q ss_pred CCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 008689 480 RNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 480 ~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~~ 532 (557)
++. .+|+++|.++..+|++++|++.|++|++++|+ +..+...+..+...+...
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 998 77999999999999999999999999999999 888888888776655444
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.28 E-value=3e-11 Score=109.27 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=100.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHH-HHhhhCH--HHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKVL 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~k~~~~--~~A~~~~~~al 475 (557)
+..+...|..++..|+|++|+..|.+|+.+.+.+. .++.++|.+ |...+++ ++|+..+++++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 46688899999999999999999999999887543 247899999 8899999 99999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
..+|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999865555444443
No 117
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.28 E-value=8.8e-12 Score=102.58 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..++..|+|.+|+..|.++++..+... .++.++|.++..+++|++|+.+++++++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 4567789999999999999999999999866432 2478999999999999999999999999999
Q ss_pred C--ChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 008689 480 R--NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 480 ~--~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~p~n 515 (557)
. +..+++++|.++..+ |++++|++.|++++...|.+
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9 999999999999999 99999999999999999976
No 118
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.27 E-value=5.5e-12 Score=111.18 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCC
Q 008689 169 PKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPN 248 (557)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~ 248 (557)
++.|+.|+++|+++ .+|++|+++. +.|.+|.+++++||+++|.+|++|+++.+.|||+.|||+. +
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------------~ 67 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------------D 67 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------------C
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------------C
Confidence 56789999999999 8999999888 9999999999999999999999999999999999999965 4
Q ss_pred CeEEEEEEeeccc
Q 008689 249 ATLQIALELVSWK 261 (557)
Q Consensus 249 ~~l~~~v~l~~~~ 261 (557)
..+++.|.+..|.
T Consensus 68 ~~lv~~v~~~~f~ 80 (158)
T 3cgm_A 68 PEGVQVVPLSAFP 80 (158)
T ss_dssp GGGEEEEEGGGSC
T ss_pred cceEEEEEHHHCC
Confidence 4678888888884
No 119
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.27 E-value=5.6e-12 Score=130.32 Aligned_cols=100 Identities=25% Similarity=0.446 Sum_probs=88.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (557)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~ 130 (557)
..+..||.|++||+++. ||+.|++++ +.|+.|.+|.|+++|||+++|.||++|++++|.+|++.+||..+. +
T Consensus 156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a 227 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K 227 (432)
T ss_dssp SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence 56899999999999995 999999987 479999999999999999999999999999999999999998764 4
Q ss_pred CCcEEEEEEEEEeeeccccccccceeee
Q 008689 131 NATLQFDVELLSWTSVKDICKDGGIIKK 158 (557)
Q Consensus 131 ~~~l~~~v~l~~~~~~~d~~~d~~~~~~ 158 (557)
+.+++|+|+|+++........|+.+.+.
T Consensus 228 g~~~~F~V~v~~v~~~~lpeldDEfak~ 255 (432)
T 1w26_A 228 GKAAKFAINLKKVEERELPELTAEFIKR 255 (432)
T ss_dssp SCEEEEEEECCEECCEECCCCSHHHHTT
T ss_pred CceEEEEEEEEEEeccCCCCcchHHHHH
Confidence 5899999999999876556566666653
No 120
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.26 E-value=8.6e-11 Score=117.74 Aligned_cols=124 Identities=24% Similarity=0.344 Sum_probs=110.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
.......|..+++.|+|++|+..|.+++...+.+. .....++.++|.+|.+++++++|+..++++++.+
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33455679999999999999999999999876432 2344557899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
|++..+++++|.+|..+|++++|++.|+++++++|++..+...+.++...+++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988776543
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=1e-10 Score=99.12 Aligned_cols=129 Identities=27% Similarity=0.380 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+...|..++..|++++|+..|.+++...+.. ..++.++|.++...+++++|+..+++++..+|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 46678999999999999999999999875532 124778999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+..+++.+|.++..+|++++|++.|++++++.|.+..+...+..+.....+.++.. ..|.+++.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~ 131 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHc
Confidence 99999999999999999999999999999999999888888887776665555444 35555543
No 122
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.2e-11 Score=113.62 Aligned_cols=113 Identities=25% Similarity=0.316 Sum_probs=84.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|++++...+.+. .++.++|.+|.++++|++|+.+++++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 345566777777788888888888888877665432 23677788888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTL 525 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------p~n~~~~~~l~~l 525 (557)
+|++..+++++|.+|..+|++++|+..|+++++++ |++..+...+.++
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 88888888888888888888888888888888877 7776666666543
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=5.6e-11 Score=128.58 Aligned_cols=133 Identities=7% Similarity=0.016 Sum_probs=116.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..+++.|+|++|+..|++|+++.+.+. .+++++|.+|..+++|++|+.++++++++
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 356788999999999999999999999999876543 34889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM---KEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~---~~~~~~~~~~~~~mf~~ 546 (557)
+|++..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...+ .+.++.. ..|++.+..
T Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~al~~ 157 (568)
T 2vsy_A 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAAVAQ 157 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998888777 5555444 355555543
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=5.8e-11 Score=114.65 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=97.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|.+++...|.+.. ...+++++|.||+++++|++|+..+++++...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999998765431 24458899999999999999999999999998
Q ss_pred CCC---hHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689 479 SRN---VKALYRRAQAYIQ--------MADLDLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 479 p~~---~ka~~~~g~a~~~--------lg~~~~A~~~~~~al~l~p~n~~~~ 519 (557)
|++ ..++|++|.+|.. +|++++|+..|+++++++|++..+.
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 855 6799999999999 9999999999999999999986555
No 125
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=2.2e-10 Score=103.05 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=112.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
...+...|..++..|++++|+..|.+++...+... .++.++|.++...+++++|+.++++++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------------KVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34567888999999999999999999998865332 347899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.+..+.. ..|++++..
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~ 173 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHc
Confidence 9999999999999999999999999999999999999988888888877776655544 355555543
No 126
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.21 E-value=2.6e-10 Score=110.02 Aligned_cols=114 Identities=19% Similarity=0.055 Sum_probs=102.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..++..|+|++|+..|.+|+...+... .++.++|.+|..+++|++|+.++++++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4577788999999999999999999999999866432 3488999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++|.+..+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999997555544433
No 127
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=3.7e-10 Score=108.92 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=103.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--------hhCHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL 470 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------~~~~~~A~~~ 470 (557)
...+...|..+++.|+|.+|+..|+++++..|.+.. ...+++++|.||++ ++++++|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 566789999999999999999999999999875542 23458899999999 9999999999
Q ss_pred HHHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 008689 471 CTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKM 529 (557)
Q Consensus 471 ~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~l~~~~ 529 (557)
+++++..+|++..+. +.+|.+|..+|+|++|+..|+++++..|++ ..+...+..+...+
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999999986666 999999999999999999999999999985 45666677666655
No 128
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.2e-10 Score=109.21 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=117.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------HHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------EEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (557)
+..+...|..+++.|+|++|+..|.+++.+.+....... +...........++.++|.++..+++|++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 677889999999999999999999999996543110000 000011223456788999999999999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+.++++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+.++... .|++.+.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE-TLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888888777766655443 5555444
No 129
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=1.1e-10 Score=123.54 Aligned_cols=130 Identities=15% Similarity=-0.005 Sum_probs=114.9
Q ss_pred HhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
+..+...|..++..++| ++|+..|++|+++.+... .+++++|.+|.++++|++|+.+|++++++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV---------------EAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999 999999999999877543 34889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008689 478 DSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM--------KEYNKKEAKFY 540 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l---------g~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~--------~~~~~~~~~~~ 540 (557)
+|+ ..+++++|.+|..+ |++++|++.|++|++++|++..++..+..+...+ .+.++... .|
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~ 244 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY 244 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence 999 79999999999999 9999999999999999999999999999988777 66655543 55
Q ss_pred HHHhh
Q 008689 541 GNMFA 545 (557)
Q Consensus 541 ~~mf~ 545 (557)
.+...
T Consensus 245 ~~al~ 249 (474)
T 4abn_A 245 AQAEK 249 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.18 E-value=2.6e-11 Score=106.86 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=85.8
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
..++++|.+++..|+|++|+..+++++.++|++..+|+.+|.+|..+|+|++|++.|++|++++|++..+...+..+...
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008689 529 MKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~~ 546 (557)
+.+..+... .|.+....
T Consensus 102 ~g~~~~A~~-~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAES-GLFLAQEL 118 (148)
T ss_dssp TTCHHHHHH-HHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHHH
Confidence 776666553 55555443
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=9.4e-11 Score=109.04 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=94.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|.+|+...+... .+++++|.+|.++++|++|+.++++++.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999876432 348899999999999999999999999988
Q ss_pred CCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 479 SRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 479 p~~~----------------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
|.+. .+++++|.+|..+|++++|++.|+++++++|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8877 9999999999999999999999999999999873
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=1.1e-10 Score=123.50 Aligned_cols=121 Identities=16% Similarity=0.031 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHc---------CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--------h
Q 008689 400 GKKKEQGNTLFKA---------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------K 462 (557)
Q Consensus 400 ~~~k~~G~~~~~~---------~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~ 462 (557)
..+...|..++.. |+|++|+..|++|+++.+.+. .+++++|.+|..+ +
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence 5567888889998 999999999999999877543 2488999999999 9
Q ss_pred CHHHHHHHHHHHHccCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
+|++|+.+++++++++| +++.+|+++|.+|..+|+|++|++.|++|++++|++..+...+..+...+.+..+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999898888887777766554
No 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=3.8e-10 Score=106.57 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=96.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|++++...|.+.. ...+++++|.||+++++|++|+..++++++.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999998775432 23358899999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 479 SRNVK---ALYRRAQAYIQ------------------MADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 479 p~~~k---a~~~~g~a~~~------------------lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
|++.. |+|++|.++.. +|++++|+..|+++++.+|++..+..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99975 89999999987 57899999999999999999975443
No 134
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.18 E-value=1.7e-10 Score=111.41 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+...|..++..|+|++|+..|.+++. .+.+... ...++.++|.+|..++++++|+.+++++++++|.+
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-----------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence 34444444455555555555555444 2211111 23346677777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK-TLKE 527 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~-~l~~ 527 (557)
..+++.+|.+|..+|++++|++.|+++++++|++..+...+. .+..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776666666 4433
No 135
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=8.1e-12 Score=103.15 Aligned_cols=94 Identities=29% Similarity=0.418 Sum_probs=73.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..|+|++|+..|.+|++..+.+. .+++|+|.||.++++|++|+.+|++++.++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 55677788888888888888888888888766432 237788888888888888888888888888
Q ss_pred CCC------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 479 SRN------VKALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 479 p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
|++ .++++++|.++..+|++++|+..|++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 887 88888888888888877777666543
No 136
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.17 E-value=7.1e-11 Score=119.39 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=106.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|++++...+... .+++++|.+|.+++++++|+..+++++.++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45567788889999999999999999998765432 347889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
|++..+++++|.+|..+|++++|+..|+++++++|++ ..+...+..+...+.+.++... .+++.+.
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~ 358 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA-ADARDLS 358 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH-HHTTCHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH-hHHHHHH
Confidence 9999999999999999999999999999999999888 7788888888777766555443 4443333
No 137
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1.9e-10 Score=103.47 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=113.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|++++|+..|.+++...+.. ..++.++|.++..++++++|+..+++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46678889999999999999999999998765532 234789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|.+..+++.+|.++..+|++++|++.|+++++++|++..+...+..+...+.+..+... .|.+++.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~ 138 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALG 138 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHh
Confidence 999999999999999999999999999999999999999888888887776665555443 4555444
No 138
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.16 E-value=1.3e-10 Score=117.78 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=100.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..|+|++|+..|+++++..+.+. .+++++|.+|.++++|++|+.+++++++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34567788889999999999999999998866432 247899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------------RDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------------~~~~~~l~~l~~~~~~~~~~~ 536 (557)
|++..+++++|.+|..+|++++|+..|+++++++|++ ..+...+..+...+.+.+..+
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999998873 456666777666665554443
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=2.7e-10 Score=112.24 Aligned_cols=112 Identities=24% Similarity=0.263 Sum_probs=91.7
Q ss_pred HHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
.+..+.+.|..+... |+|++|+.+|++|+++.+..... .....++.|+|.+|.++|+|++|+.++++++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356788999999996 99999999999999998754321 12345688999999999999999999999999
Q ss_pred cCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 477 LDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 477 ~~p~~~k-------a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
+.|++.. +++++|.+|..+|++++|+..|+++++++|+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9887643 78999999999999999999999999999987643
No 140
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.15 E-value=1.7e-11 Score=124.97 Aligned_cols=137 Identities=19% Similarity=0.367 Sum_probs=101.8
Q ss_pred CCCCCCcCCCCCCCCcCccCcceee------e-cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCC
Q 008689 9 AANEMDADMDLPDDAPMMKVGEEKE------I-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRST 81 (557)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~ 81 (557)
+...++++.-++..-|...|.++.+ + ...+.+ .. .+ ..+..||.|+|||+++. ||+.|+++. +.
T Consensus 116 Pev~l~~y~~l~v~~~~~~Vtde~Vd~~l~~l~~~~a~~----~~-~~-~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~ 186 (392)
T 1t11_A 116 PEVELKGLENIAVEKPAAEVTDADVAEMLETLRKQQATW----KE-VD-EAAENGKRVSIDFVGSI-DGVEFEGGK--AE 186 (392)
T ss_dssp CCCCCTTCTTCEEESSCC---CTHHHHHHHHHHHHHCEE----EE-CS-CCCCTTCEEEEEEEEES-SSSCCTTCE--EE
T ss_pred CceecCCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCee----ee-cC-CCCCCCCEEEEEEEEEE-CCEEccCCC--cc
Confidence 3345666655555555555555432 1 111222 21 13 46899999999999995 999999884 47
Q ss_pred ceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeee
Q 008689 82 PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI 159 (557)
Q Consensus 82 p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i 159 (557)
|+.|.+|.|+++|||+++|.||++|++++|.|+++..||..+. ++.++.|+|+|+++........|..+++.+
T Consensus 187 ~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----aGk~~~F~V~v~~i~~~~lpeldDEfak~~ 259 (392)
T 1t11_A 187 NFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KGKAAKFAIKVNKVEARELPELNDEFVARF 259 (392)
T ss_dssp EEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SSCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred ceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----CCCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence 9999999999999999999999999999999997788987654 569999999999999876666677777543
No 141
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.9e-11 Score=133.76 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=49.1
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
++|+|.+|.++|+|++ +.+|++|++++|++..+++++|.+|..+|++++|+++|++|++++|++..++..+..+
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 5566666666666666 6666666666666666666666666666666666666666666666666555555544
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.15 E-value=2.4e-11 Score=109.91 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=107.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
+...++.++..++|++|+..|.+++...+.+. .++.++|.+|..+++|++|+.++.+++.++|++
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 77 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44456667889999999999999999876443 248899999999999999999999999999999
Q ss_pred hHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 482 VKALYRRAQA-YIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 482 ~ka~~~~g~a-~~~lg~~--~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
..+++++|.+ +...|++ ++|+..|+++++++|++..+...+..+...+.+..+... .|.+++...
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~ 145 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHHhhC
Confidence 9999999999 8899999 999999999999999999999999888877776666553 666666543
No 143
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=5.3e-11 Score=131.64 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+++.|+|++|+..|++|++..+.+.. +++++|.+|+++++|++|+.++++|++++|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------------LVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45778899999999999999999999999876543 488999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
++..+++++|.+|..+|+|++ ++.|++|++++|++..+...+..+...+.+.++..
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999 99999999999999999999998887777666544
No 144
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.15 E-value=4.9e-10 Score=105.94 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=66.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-HHHHH------HHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-KKQAK------ALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-~~~~~------~~~~~~~~nla~~~~ 459 (557)
+..+...|..++..|++++|+..|.+++...+..... ..++ ....+ .....++.++|.++.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666777777777777777776654432110 0000 00000 001123445555555
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
+++++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.+
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 208 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence 555555555555555555555555555555555555555555555555555555555554444444444433
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.14 E-value=2.6e-10 Score=97.42 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VK 519 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~-------~~ 519 (557)
....+.|+|.+++++++|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+++|++|++++|++.. +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34457799999999999999999999999999999999999999999999999999999999999987743 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 520 LEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 520 ~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
..++.+...+...++.. ..|++.+
T Consensus 87 ~~lg~~~~~~~~~~~A~-~~~~kal 110 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAV-QWFHRSL 110 (127)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 34444544444444433 2444443
No 146
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=4.7e-10 Score=110.50 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=96.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-hCHHHHHHHHHHHH
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL 475 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al 475 (557)
..+..+.+.|+.+.+.|+|++|+.+|.+|+.+.+..... .....++.|+|.+|..+ ++|++|+.++++++
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 347788899999999999999999999999987654321 22355688999999996 99999999999999
Q ss_pred ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
.+.|.+ ..++.++|.+|..+|+|++|+..|++++++.|++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 988754 578999999999999999999999999999998753
No 147
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.14 E-value=8.1e-10 Score=114.94 Aligned_cols=121 Identities=25% Similarity=0.355 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+++.|+|++|+..|.+++...+.+. .....++.++|.++.+++++++|+..|++++.++|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3445669999999999999999999999766422 22345688999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
++..+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+...++.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999988887666544
No 148
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.13 E-value=3.4e-10 Score=107.03 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=72.8
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
..++.++|.++.+++++++|+..+++++..+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999988887776644
No 149
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=2.7e-10 Score=95.14 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (557)
Q Consensus 417 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg 496 (557)
.|+..|.+++...+.+. .+++++|.+|+.+++|++|+.++++++.++|++..+++.+|.+|..+|
T Consensus 3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 57889999998776443 248899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 008689 497 DLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 497 ~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~ 531 (557)
++++|+..|+++++++|+ +......+..+...+.+
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999885 44444555444444433
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.13 E-value=8.2e-10 Score=93.46 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=85.7
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
++++|.++++.++|++|+..++++++.+|++..+|+.+|.++..+|++++|+..|++|++++|++..+...+..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHhh
Q 008689 531 EYNKKEAKFYGNMFA 545 (557)
Q Consensus 531 ~~~~~~~~~~~~mf~ 545 (557)
+..+... .|.+.+.
T Consensus 100 ~~~~A~~-~~~~al~ 113 (121)
T 1hxi_A 100 NANAALA-SLRAWLL 113 (121)
T ss_dssp HHHHHHH-HHHHHHC
T ss_pred CHHHHHH-HHHHHHH
Confidence 7776653 5665554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.12 E-value=6.3e-10 Score=94.35 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=85.7
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
...+.++|.++++.++|++|+..+++++.++|++..+++++|.+|..+|+|++|+.+|+++++++|++..+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008689 528 KMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~ 545 (557)
.+.+..+... .|.+.+.
T Consensus 84 ~~~~~~~A~~-~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALE-TLDAART 100 (126)
T ss_dssp HTTCHHHHHH-HHHHHHH
T ss_pred HHhCHHHHHH-HHHHHHH
Confidence 7776665543 4554443
No 152
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=2.2e-10 Score=103.72 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNKKEAKFY 540 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (557)
....|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+. ..+...+..+...+.+..+.. ..|
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA-SKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH-HHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH-HHH
Confidence 33446777788888899999999999999999999999999999999999975 457778887777665554443 366
Q ss_pred HHHhhh
Q 008689 541 GNMFAK 546 (557)
Q Consensus 541 ~~mf~~ 546 (557)
++.+..
T Consensus 168 ~~al~~ 173 (176)
T 2r5s_A 168 RRQLYS 173 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 153
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.12 E-value=2.1e-10 Score=116.16 Aligned_cols=130 Identities=9% Similarity=0.014 Sum_probs=107.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
..|..+.+.|++++|+..|.+++...+.... ..+++++|.+|.++++|++|+..+++++.++|++..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3488899999999999999999998765211 234789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|++++...
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~ 311 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS-NFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC
Confidence 999999999999999999999999999999999999999888887776665543 566555443
No 154
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.12 E-value=7.1e-10 Score=105.77 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=59.4
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
.++.++|.+|.+++++++|+.++++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666665555555554
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008689 529 MKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~ 545 (557)
+.+.++.. ..++++..
T Consensus 222 ~g~~~~A~-~~~~~~~~ 237 (252)
T 2ho1_A 222 FEDRDTAA-SYGLQLKR 237 (252)
T ss_dssp TTCHHHHH-HHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHH
Confidence 44444333 24444433
No 155
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.11 E-value=4.3e-10 Score=112.60 Aligned_cols=110 Identities=26% Similarity=0.284 Sum_probs=100.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..|+|++|+..|.+++...|.+. .++.++|.|+..+++|++|+..+++++..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999876543 348899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP---DNRDVKLEYK 523 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p---~n~~~~~~l~ 523 (557)
|++..+++.+|.+|..+|++++|+..|+++++++| ++..+...+.
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 99999999999999999999999999999999999 8877776664
No 156
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.11 E-value=8.9e-10 Score=102.57 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=76.2
Q ss_pred HHHhhHHHHHHhh-hCHHHHHHHHHHHHc--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKL-KDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 449 ~~~~nla~~~~k~-~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
.++.++|.+|..+ +++++|+..+++++. .+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3477888888888 888888888888888 6666688888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008689 526 KEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 526 ~~~~~~~~~~~~~~~~~mf~~ 546 (557)
...+.+.++... .|.+++..
T Consensus 157 ~~~~~~~~~A~~-~~~~~~~~ 176 (225)
T 2vq2_A 157 KMLAGQLGDADY-YFKKYQSR 176 (225)
T ss_dssp HHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHH-HHHHHHHh
Confidence 776666655443 55555543
No 157
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.11 E-value=1.1e-09 Score=101.89 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=75.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP-DNRDVKLEYKTLK 526 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p-~n~~~~~~l~~l~ 526 (557)
..++.++|.++.+++++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++| .+......+..+.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999 8888776666665
Q ss_pred HHHHHHHH
Q 008689 527 EKMKEYNK 534 (557)
Q Consensus 527 ~~~~~~~~ 534 (557)
......+.
T Consensus 193 ~~~~~~~~ 200 (225)
T 2vq2_A 193 KALGNAQA 200 (225)
T ss_dssp HHTTCHHH
T ss_pred HhcCcHHH
Confidence 55544443
No 158
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.1e-10 Score=119.05 Aligned_cols=106 Identities=30% Similarity=0.320 Sum_probs=98.6
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
+.+.+..+...|+.+++.|+|.+|+..|++++...|+ ..++.++|.||+++++|++|+.+|+++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4567899999999999999999999999999998752 234889999999999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
++++|++..+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 107 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999764
No 159
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.10 E-value=9e-10 Score=108.53 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=61.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH----HhhhCHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKLKDYKQAEKLCTKV 474 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~~~~~~A~~~~~~a 474 (557)
...+...|..+.+.|++++|+..|+++++..|... ..+++.++ ...+++++|+..++++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 34566778888888999999999999888754321 11222111 1224455555555555
Q ss_pred HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
+..+|+++.+++.+|.+|..+|++++|++.|++|++++|++.++...+..+..
T Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555444444444333
No 160
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=4e-10 Score=110.80 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=101.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH----------
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE---------- 468 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~---------- 468 (557)
...+...|..+++.|++++|+..|++++...|.+... ++++|.+++.+|++++|+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI---------------GLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH---------------HHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH---------------HHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 4567889999999999999999999999998865422 556666666666666554
Q ss_pred ------------------------HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 008689 469 ------------------------KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEY 522 (557)
Q Consensus 469 ------------------------~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l 522 (557)
..+++++..+|++..+++++|.+|..+|++++|++.|.++++++|++ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 55555677789999999999999999999999999999999999998 6788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008689 523 KTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~~mf 544 (557)
..+...+.+..+.. ..|++.+
T Consensus 262 ~~~~~~~g~~~~a~-~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALA-SXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHH-HHHHHHH
T ss_pred HHHHHHcCCCCcHH-HHHHHHH
Confidence 88877765544433 2444443
No 161
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=1.9e-09 Score=101.64 Aligned_cols=135 Identities=11% Similarity=0.039 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh------------------h
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------L 461 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k------------------~ 461 (557)
..+...|..+++.|+|++|+..|+++++..|.+... ..+++++|.|+.+ +
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 109 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDP 109 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence 467788999999999999999999999998865531 1235566776665 6
Q ss_pred hCHHHHHHHHHHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE 521 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~ 521 (557)
+++++|+..++++++..|++..+. +.+|.+|..+|+|++|+..|+++++..|++. .+...
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 799999999999999999997655 6789999999999999999999999999987 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
+..+..++.+..+.. +.++++...-
T Consensus 190 l~~~~~~~g~~~~A~-~~~~~l~~~~ 214 (225)
T 2yhc_A 190 MENAYRQMQMNAQAE-KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHCC
T ss_pred HHHHHHHcCCcHHHH-HHHHHHHhhC
Confidence 677777776666654 3555555443
No 162
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=4.7e-10 Score=114.69 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=84.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~ 459 (557)
+..+...|..+++.|+|++|+..|+++++..|..... .++-..... .....++.++|.++.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567888999999999999999999999876643211 000000000 001223456666666
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
.++++++|+..+.+++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+........+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666655555544444433
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.09 E-value=1.6e-10 Score=100.69 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=85.3
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
..++++|.++++.++|++|+..+++++..+|++..+|+.+|.+|..+|+|++|+..|++|+.++|++..+...+..+...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008689 529 MKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~ 545 (557)
+.+..+... .|.+.+.
T Consensus 99 ~g~~~~A~~-~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAES-GFYSARA 114 (142)
T ss_dssp TTCHHHHHH-HHHHHHH
T ss_pred cCCHHHHHH-HHHHHHH
Confidence 776666553 5555443
No 164
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.3e-09 Score=105.02 Aligned_cols=142 Identities=23% Similarity=0.246 Sum_probs=115.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..++..|+|++|+..|.+|+.+........ ......++.++|.+|..+++|++|+.++.+++.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999864321100 123556789999999999999999999999998
Q ss_pred c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (557)
Q Consensus 477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~p~n~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (557)
+ +|....+++++|.+|..+|++++|+..|++++++ +|....+...+..+...+.+.++... .|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~ 192 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LY 192 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence 8 5777999999999999999999999999999999 66666777788888777766665543 55
Q ss_pred HHHhhh
Q 008689 541 GNMFAK 546 (557)
Q Consensus 541 ~~mf~~ 546 (557)
.+++..
T Consensus 193 ~~~l~~ 198 (283)
T 3edt_B 193 KEILTR 198 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 165
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.08 E-value=1.8e-09 Score=108.97 Aligned_cols=147 Identities=7% Similarity=-0.005 Sum_probs=117.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHHHH----------H
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKKQA----------K 444 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------------------~~~~~~----------~ 444 (557)
...+...|..++..|++++|+..|.+++...+....... ....+. .
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence 455677888888889999999999988887665432211 000000 0
Q ss_pred HH--HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 445 AL--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 445 ~~--~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
.. ...++.++|.+|.++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+
T Consensus 212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 01 3567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 523 KTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
..+...+.+..+... .|.+++..
T Consensus 292 ~~~~~~~g~~~~A~~-~~~~al~~ 314 (368)
T 1fch_A 292 GISCINLGAHREAVE-HFLEALNM 314 (368)
T ss_dssp HHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHh
Confidence 988888777666553 55555544
No 166
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=8.5e-10 Score=112.73 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=105.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~~~ 459 (557)
+..+...|..+.+.|++.+|+..|++|+...|..... .++-... .......++.++|.+|.
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 3456677888888888888888888888776543210 0110000 11112456778888888
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
+++++++|+..++++++++|+++.+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.....+.++.. ..
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 327 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RL 327 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 88888888888888888888888888888888888888888888888888888888888877777776666555544 35
Q ss_pred HHHHhhh
Q 008689 540 YGNMFAK 546 (557)
Q Consensus 540 ~~~mf~~ 546 (557)
|.++...
T Consensus 328 ~~~al~~ 334 (388)
T 1w3b_A 328 YRKALEV 334 (388)
T ss_dssp HHHHTTS
T ss_pred HHHHHhc
Confidence 6665543
No 167
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.08 E-value=3.5e-10 Score=111.90 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=112.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
...+...|..++..|++++|+..|.+++...+... .++.++|.++..++++++|+..+++++..+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45577889999999999999999999998866432 347899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~------------n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
|++..+++.+|.+|..+|++++|++.|+++++++|+ +..+...+..+...+.+.++... .+++.+..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~ 315 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL-TYAQNVEP 315 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH-HTTCCSHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999 67788888888777766655443 44444443
No 168
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.08 E-value=1.1e-09 Score=104.40 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=112.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc--
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-- 476 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-- 476 (557)
+..+...|..++..|++++|+..|.+++...+... .++.++|.+|..++++++|+.++++++.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 135 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence 45677889999999999999999999999876543 2378999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
.+|.+..+++.+|.+|..+|++++|++.|+++++++|.+..+...+..+...+.+.++... .|.+++.
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~ 203 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ-YYDLFAQ 203 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 8899999999999999999999999999999999999999888888888777766655543 5555544
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.07 E-value=2.3e-09 Score=93.78 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=108.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..++|++|+..|.+|+.+.+..... .....++.++|.+|..+++|++|+.++++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999988754321 3345678899999999999999999999999
Q ss_pred ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (557)
Q Consensus 476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (557)
.+.+.. ..+++++|.+|..+|++++|++.+++++.+.+.. ..+...+..+...+.+..+.. ..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 155 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH 155 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 875443 6789999999999999999999999999874322 234445555555554444433 345554
Q ss_pred hhhc
Q 008689 544 FAKM 547 (557)
Q Consensus 544 f~~~ 547 (557)
+...
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 170
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.07 E-value=1.3e-09 Score=105.11 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=102.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..|+|++|+..|.++++..+.... ++.++|.+|.++++|++|+.++++++.++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 445788999999999999999999999998776442 38899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
|.+..+++++|......+++++|++.|+++++++|++..+...+..+...+..
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 99999999999444445599999999999999999998877777777665543
No 171
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.06 E-value=5.2e-10 Score=119.16 Aligned_cols=116 Identities=25% Similarity=0.358 Sum_probs=99.6
Q ss_pred ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (557)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (557)
...++..++...+..+...|+.+++.|+|++|+..|++++...|.+. .+++++|.||.++++|++
T Consensus 13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~ 77 (537)
T 3fp2_A 13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---------------VFYSNISACYISTGDLEK 77 (537)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHH
Confidence 44578888999999999999999999999999999999999877543 348899999999999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
|+..|++++.++|++..+++++|.+|..+|++++|+..|+ ++.++|+....
T Consensus 78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 9999999999999999999999999999999999999996 89999987543
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.06 E-value=1.5e-09 Score=96.68 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
...+.++|.++++.++|++|+.++++++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008689 528 KMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~~ 546 (557)
.+.+..+... .|.+.+..
T Consensus 91 ~~g~~~~A~~-~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKE-AYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHH-HHHHHHHH
T ss_pred HccCHHHHHH-HHHHHHHh
Confidence 8777666553 55555543
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.06 E-value=8.8e-10 Score=96.89 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=84.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-------ChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-------NVK-----ALYRRAQAYIQMADLDLAEFDIKKALEI---- 511 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~g~a~~~lg~~~~A~~~~~~al~l---- 511 (557)
...+.|+|.+++++|+|++|+..|++||+++|+ +.. +|+++|.|+..+|+|++|+.+|++|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344779999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 512 ---DPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 512 ---~p~n~~~~----~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|++..++ .....+...+.+.++... .|++.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHh
Confidence 99998888 888888888877777664 5655544
No 174
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.06 E-value=2.7e-09 Score=105.57 Aligned_cols=145 Identities=10% Similarity=-0.007 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------HH-H------HHHHHHHHHHHhhHHHHHHh
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EE-K------KQAKALKVACNLNNAACKLK 460 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------~~-~------~~~~~~~~~~~~nla~~~~k 460 (557)
..+...|..++..|+|++|+..|.+++...+....... ++ . .+.......++.++|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34566777788888888888888888877665543310 00 0 00000112346677777777
Q ss_pred hh-CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 461 LK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 461 ~~-~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
++ ++++|+.++++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|++..+...+..+.....+..+... .
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER-F 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH-H
Confidence 77 777777777777777777777777777777777777777777777777777776666666666555555444432 4
Q ss_pred HHHHhh
Q 008689 540 YGNMFA 545 (557)
Q Consensus 540 ~~~mf~ 545 (557)
|.+++.
T Consensus 182 ~~~al~ 187 (330)
T 3hym_B 182 FSQALS 187 (330)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444443
No 175
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.06 E-value=1.5e-09 Score=112.91 Aligned_cols=113 Identities=26% Similarity=0.268 Sum_probs=102.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..+++.|+|.+|+..|++++...+.+ ..+++++|.||.+++++++|+.+++++++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457888999999999999999999999999886643 23488999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT 524 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~ 524 (557)
.+|++..+++.+|.+|..+|++++|++.|+++++++|++. .+...+..
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 66655533
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.5e-09 Score=89.30 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=70.3
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEY 522 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l 522 (557)
..+.++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|++.|+++++++|++ ..+...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999998 4444444
Q ss_pred HHHHH
Q 008689 523 KTLKE 527 (557)
Q Consensus 523 ~~l~~ 527 (557)
..+..
T Consensus 85 ~~~~~ 89 (111)
T 2l6j_A 85 ELAQG 89 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.05 E-value=2e-09 Score=85.09 Aligned_cols=81 Identities=33% Similarity=0.419 Sum_probs=74.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
..+++++|.++.++++|++|+.++++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999888887777654
Q ss_pred H
Q 008689 528 K 528 (557)
Q Consensus 528 ~ 528 (557)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 178
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.04 E-value=1.9e-09 Score=106.67 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=115.0
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
+..+...|..++..| ++++|+..|.+++...+.... ++.++|.+|..+++|++|+..+++++..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------------AWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345678889999999 999999999999987665432 3789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~ 547 (557)
+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|.+++...
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~ 223 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK-WFLDALEKI 223 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH-HHHHHHHHh
Confidence 999999999999999999999999999999999999999998888888777776666553 566665543
No 179
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.6e-09 Score=91.59 Aligned_cols=101 Identities=32% Similarity=0.418 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..++..+++++|+..|.+++...+... .++.++|.++..++++++|+..+++++...|
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4466788999999999999999999998765322 2477999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus 101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999874
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.01 E-value=5.1e-09 Score=110.33 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=114.2
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (557)
.+.+..+....+.+..+..+|+|++|+..|.+++......-... ....+..++|||.+|..+|+|++|+.++.
T Consensus 303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45566777788888888899999999999999999865432111 13466778999999999999999999999
Q ss_pred HHHcc-----CCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHHHHHHH
Q 008689 473 KVLDL-----DSR---NVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKL---EYKTLKEKMKEYNKKE 536 (557)
Q Consensus 473 ~al~~-----~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~---~l~~l~~~~~~~~~~~ 536 (557)
++|.+ .|+ -..+++++|.+|..+|+|++|+..|++|+.+ .|+++.+.. .+..+...+.+.++.+
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99974 344 4778999999999999999999999999974 677775554 4555566666666666
Q ss_pred HHHHHHHhhhc
Q 008689 537 AKFYGNMFAKM 547 (557)
Q Consensus 537 ~~~~~~mf~~~ 547 (557)
. +|+++-.+.
T Consensus 456 ~-~~~~~~~~~ 465 (490)
T 3n71_A 456 F-MYHKMREAA 465 (490)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 4 666665443
No 181
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=5.3e-09 Score=106.87 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=98.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|..|+..|.+|+++.+..... ......+++|+|.+|..+|+|++|+.++++++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456778888999999999999999999999887765432 12345678888888888888888888888888
Q ss_pred ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEI-----D-PDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~-p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
.+.+.. ..+++++|.+|..+|++++|++.|++|+++ + |....+...+..+...+.+.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 765433 358888888888888888888888888883 5 55556666666666555544443
No 182
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.99 E-value=1.7e-09 Score=104.30 Aligned_cols=126 Identities=11% Similarity=-0.023 Sum_probs=105.2
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
.+...++|++|+..|.++++..+.. ......+++++|.+|..+++|++|+..+++++.++|++..+++.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 82 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 82 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 3445688999999999999863211 01234568899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+|.+|..+|++++|++.|+++++++|++..+...+..+...+.+..+... .|.+++.
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~ 139 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQ 139 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999998888888777766655443 5555554
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=2.8e-09 Score=86.74 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=63.6
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
.+++++|.+|+++++|++|+.+++++++++|++..+|+++|.+|..+|++++|++.|++++++.|++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4588999999999999999999999999999999999999999999999999999999999997753
No 184
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=3.6e-09 Score=104.04 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+.+|.+|++........ ......+++|+|.+|.++++|++|+.++++++.+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999887654222 2355667999999999999999999999999987
Q ss_pred CCCC------hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 008689 478 DSRN------VKALYRRAQAYIQMA-DLDLAEFDIKKALEID 512 (557)
Q Consensus 478 ~p~~------~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~ 512 (557)
.+.. ..+|+++|.+|..+| .+++|++.|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6443 789999999999999 5799999999999763
No 185
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.97 E-value=2.7e-09 Score=111.82 Aligned_cols=125 Identities=14% Similarity=0.057 Sum_probs=99.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~- 477 (557)
+..+...|..++..|+|++|+.+|++|+++.+...... ...-.+.+|.|+|.+|..+|+|++|+.++++++.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 45567899999999999999999999999876432110 00113456889999999999999999999999875
Q ss_pred -------CCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 478 -------DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 478 -------~p~~~ka~~~~g~a~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
++..+.++.++|.++..++ +|++|+++|++|++++|++.++...+..+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3456788999999888765 699999999999999999998887777665444
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=2.8e-09 Score=104.81 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=105.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc-
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD- 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~- 476 (557)
.+..+...|..++..++|++|+..|.+|+.+....... ...+.+++|+|.+|..+++|++|+.++++++.
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555668898898999999999999999865443322 12455689999999999999999999999994
Q ss_pred ------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008689 477 ------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEY-NKKEAKFYGNM 543 (557)
Q Consensus 477 ------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~-~~~~~~~~~~m 543 (557)
..+....+++++|.+|..+|+|++|++.+++|+++.+.. ..+...++.+..++.+. ++. ...|++.
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A-~~~~~~A 263 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI-EDAYKKA 263 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHH
Confidence 223346799999999999999999999999999987554 56777777777776632 332 2345544
Q ss_pred hh
Q 008689 544 FA 545 (557)
Q Consensus 544 f~ 545 (557)
+.
T Consensus 264 l~ 265 (293)
T 3u3w_A 264 SF 265 (293)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 187
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.97 E-value=6.1e-09 Score=89.17 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=86.8
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
...+.++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008689 528 KMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~~ 546 (557)
.+.+..+... .|++.+..
T Consensus 89 ~~~~~~~A~~-~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIA-NLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHH-HHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHH
Confidence 8776665543 55555543
No 188
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.95 E-value=3.9e-09 Score=103.91 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
...|+|++|+..|+++++..|.+. .+++++|.|+.++|+|++|+..++++|.++|+++.+++++|
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTL---------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345899999999999999866433 34889999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHH
Q 008689 490 QAYIQMADLDL-AEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 490 ~a~~~lg~~~~-A~~~~~~al~l~p~n~~~~~ 520 (557)
.++..+|++++ |.+.++++++++|+++.+..
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999976 57899999999999987655
No 189
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=1.9e-09 Score=116.51 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=87.5
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
.+++++|+..|++|++..+.+. .+++++|.+|..+++|++|+.+++++++++|++..+++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4789999999999998876543 3488999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
|..+|++++|++.|++|++++|++..+...+..+...+.+.++... .|.+.+..
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 120 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQL 120 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 9999999999999999999999999999999988877776666543 55555543
No 190
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.95 E-value=1.6e-08 Score=99.86 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=116.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC------------------------hHHHHHHHH---------
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------------------DEEKKQAKA--------- 445 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~------------------------~~~~~~~~~--------- 445 (557)
...+...|..++..|++++|+..|.+++...+...... .....+...
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 34567789999999999999999999998766543211 011111111
Q ss_pred -HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 446 -LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 446 -~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
....++.++|.+|.+++++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1245688999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008689 525 LKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 525 l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
+...+.+.++... .|.++...
T Consensus 249 ~~~~~g~~~~A~~-~~~~a~~~ 269 (327)
T 3cv0_A 249 SYSNMSQYDLAAK-QLVRAIYM 269 (327)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHhccHHHHHH-HHHHHHHh
Confidence 8777766655543 55555543
No 191
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=3e-09 Score=105.47 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=89.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+.+.|..+.. |+|++|+.+|++|+.+.+..... .....++.|+|.+|.++++|++|+.++++++.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788888877 88888888888888887653221 234567899999999999999999999999998
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 478 ~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
.+.+ ..+++++|.++..+|++++|+..|++++ ++|+..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 6544 3588899999999999999999999999 999764
No 192
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.93 E-value=1.1e-08 Score=104.38 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=97.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|++..|+..|.+|+++.+..... ......+++|+|.+|..+++|++|+.++.+++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456777788888888888888888888888877654332 11345567778888888888888888888877
Q ss_pred ccCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 476 DLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALE-----IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 476 ~~~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~-----l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
.+.+ ....+++++|.+|..+|++++|+..|++|+. .+|....+...+..+..++.+.++... .+++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 288 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGL 288 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 7532 1245777788888888888888888888877 566665666666666666655554442 455544
Q ss_pred hhc
Q 008689 545 AKM 547 (557)
Q Consensus 545 ~~~ 547 (557)
...
T Consensus 289 ~~~ 291 (378)
T 3q15_A 289 DHI 291 (378)
T ss_dssp HHC
T ss_pred HHH
Confidence 433
No 193
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=4.5e-09 Score=104.20 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=91.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+.+.|+.+.+.|+|++|+.+|.+|+.+....... .....++.|+|.+|.. ++|++|+.++++++.
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 346677888888888999999999999999886543221 2245678899999999 999999999999999
Q ss_pred cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
+.+.. ..+++++|.+|..+|+|++|+..|++++.+.|++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 87643 6789999999999999999999999999997655
No 194
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.93 E-value=3.9e-09 Score=112.39 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=116.9
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------------CCChHHHHHHH------HHHHHHHhhHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------------SFGDEEKKQAK------ALKVACNLNNA 455 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------------~~~~~~~~~~~------~~~~~~~~nla 455 (557)
.....+..+...|..++..|++++|+..|.+++...+... ...++-..... .....++.++|
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 3445677788888888889999999999998888755310 00111111111 11245688999
Q ss_pred HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~ 535 (557)
.+|..+++|++|+..+++++..+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...+.+..+.
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888887777666655
Q ss_pred HHHHHHHHhhhc
Q 008689 536 EAKFYGNMFAKM 547 (557)
Q Consensus 536 ~~~~~~~mf~~~ 547 (557)
.. .|.+++...
T Consensus 398 ~~-~~~~a~~~~ 408 (537)
T 3fp2_A 398 IK-QYDIAKRLE 408 (537)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHcC
Confidence 43 566655443
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=6.6e-09 Score=83.82 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=65.8
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~ 519 (557)
.+++|.++++.++|++|+..++++++.+|++.. +++++|.+|..+|++++|++.|+++++++|++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 358899999999999999999999999999999 999999999999999999999999999999997765
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=6.1e-10 Score=90.02 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=81.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (557)
..++|..+++.|+|++|+..|+++++..+.+.. .+++++|.||.++++|++|+.++.++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 457899999999999999999999998764321 148899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
..++++ +.+.+|+..|++++.++|++.
T Consensus 69 ~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 69 PALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 998865 667889999999998888763
No 197
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=8.6e-09 Score=99.24 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=93.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|++|+..|.+|+.+........ ......++.++|.+|..+++|++|+.++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567888999999999999999999999999864321110 02345668999999999999999999999999
Q ss_pred cc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 476 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.+ +|....+++.+|.+|..+|++++|+..|++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7778899999999999999999999999999987
No 198
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.1e-08 Score=108.02 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh---hhCHHHHHHHHHHHHc
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---~~~~~~A~~~~~~al~ 476 (557)
..+...|..+++.|+|++|+..|.+++...+....... ...++.++|.++.+ ++++++|+..+++++.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34566788888888888888888888888776543110 11248899999999 9999999999999999
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777655543
No 199
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.92 E-value=5.4e-09 Score=85.51 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=84.8
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKE 527 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~ 527 (557)
++.++|.++..+++|++|+..++++++++|.+..+++.+|.+|..+|++++|++.|+++++++|+ +..+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 9988888888877
Q ss_pred HH-HHHHHHHHHHHHHHhhh
Q 008689 528 KM-KEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 528 ~~-~~~~~~~~~~~~~mf~~ 546 (557)
.+ .+.++.. +.+.+....
T Consensus 88 ~~~~~~~~A~-~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAE-IAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHH-HHHHHHGGG
T ss_pred HHhCCHHHHH-HHHHHHhhc
Confidence 77 6665544 355555544
No 200
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=1.5e-08 Score=103.26 Aligned_cols=109 Identities=14% Similarity=-0.024 Sum_probs=97.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..++..|+|++|+..|.+|+++.+..... .....+++|+|.||..+++|++|+.++++++.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999999999999987643221 24566799999999999999999999999999
Q ss_pred -----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 477 -----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 477 -----~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
.+|....+++++|.+|..+|++++|+..+++|+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999998554
No 201
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.90 E-value=5.7e-09 Score=92.71 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=83.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHcc------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~------------------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+..+.++|.++++.++|++|+..|.+++.+ +|.+..+|+++|.||..+|+|++|+.++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445779999999999999999999999999 78888999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 510 ~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
+++|++..+...+..+...+.+..+... .|.+.+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al 124 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLLL 124 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHH
Confidence 9999999988888888887776666543 444443
No 202
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.90 E-value=1.2e-08 Score=104.15 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=97.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
....+..+...|..+...|+|++|+..|.+|+++.+.... ......++.|+|.||..+|+|++|+.+++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455778889999999999999999999999999875532 1345667999999999999999999999999
Q ss_pred Hc-----cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 475 LD-----LD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 475 l~-----~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
+. .+ |....+++++|.+|..+|++++|+..|++|+++.+
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99 56 88899999999999999999999999999999843
No 203
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=98.90 E-value=2.8e-09 Score=110.08 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=76.7
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (557)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ 244 (557)
..+..||.|++||++.. +|+.|+++ .|+.|.+|.|++++||+++|.||+.|+++.|.+|+..+||..+.
T Consensus 156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-------- 226 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-------- 226 (432)
T ss_dssp SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence 35789999999999995 89999876 89999999999999999999999999999999998899997543
Q ss_pred CCCCCeEEEEEEeecccc
Q 008689 245 VPPNATLQIALELVSWKT 262 (557)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (557)
++.+++|+|+|+++..
T Consensus 227 --ag~~~~F~V~v~~v~~ 242 (432)
T 1w26_A 227 --KGKAAKFAINLKKVEE 242 (432)
T ss_dssp --SSCEEEEEEECCEECC
T ss_pred --CCceEEEEEEEEEEec
Confidence 4789999999999864
No 204
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=1.7e-08 Score=99.16 Aligned_cols=128 Identities=14% Similarity=0.055 Sum_probs=95.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH---
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL--- 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al--- 475 (557)
+..+...|..+...|+|++|+..|.+|+.......... ....+++|+|.+|..+++|++|+.++++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~ 185 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33445567777777888888888888887654332221 135578999999999999999999999999
Q ss_pred ccCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 476 ~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~ 535 (557)
...|++ ..+++++|.+|..+|+|++|+..|++|+++.++. ..+...++.+...+.+.++.
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 445554 3799999999999999999999999999886431 34556666666666544444
No 205
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=1.4e-08 Score=99.71 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=90.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+|+.+....... ......+++|+|.+|.++++|++|+.++++++.+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999876654322 1223367899999999999999999999999987
Q ss_pred CCC------ChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 008689 478 DSR------NVKALYRRAQAYIQMADLDLA-EFDIKKALEID 512 (557)
Q Consensus 478 ~p~------~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~ 512 (557)
.+. ...+|+++|.+|..+|++++| ...|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 532 278999999999999999999 88899999764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=6.9e-09 Score=81.85 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=75.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..++|++|+..|.+|+...+.+. .++.++|.+|.+++++++|+.++++++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788899999999999999999999999866432 24789999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 008689 478 DSRNVKALYRRAQAYIQMA 496 (557)
Q Consensus 478 ~p~~~ka~~~~g~a~~~lg 496 (557)
+|++..+++++|.++..+|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998765
No 207
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.88 E-value=1.6e-08 Score=99.01 Aligned_cols=142 Identities=22% Similarity=0.227 Sum_probs=112.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|++|+..|.+|+.+........ ......++.++|.+|..+++|++|+.++.+++
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34567788899999999999999999999999864321000 12345668899999999999999999999999
Q ss_pred ccC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 476 ~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
.+. |....+++++|.+|..+|++++|++.|++++.+ .|....+...+..+...+.+.++... .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~ 217 (311)
T 3nf1_A 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-L 217 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 873 666889999999999999999999999999998 56556677777777777766655543 5
Q ss_pred HHHHhh
Q 008689 540 YGNMFA 545 (557)
Q Consensus 540 ~~~mf~ 545 (557)
|.+++.
T Consensus 218 ~~~al~ 223 (311)
T 3nf1_A 218 YKEILT 223 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 208
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.87 E-value=1.4e-08 Score=104.15 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=105.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|++|+..|++|++..+.+. .....++.++|.+|..+++|++|+.++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678888999999999999999999999999855322 2344568899999999999999999999999
Q ss_pred cc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 008689 476 DL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 476 ~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~p~n~~~~~~l~~l~~~~~~ 531 (557)
.+ ++....+++++|.+|..+|++++|+..|++++.+ .|....+...+..+...+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 87 6777899999999999999999999999999998 44445566667777666665
No 209
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.86 E-value=1.9e-08 Score=108.60 Aligned_cols=132 Identities=11% Similarity=-0.032 Sum_probs=110.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|++++|+..|.++++..+.+. ..+++++.+|.+.|++++|+..+++++..+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG---------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556678888888888888888888887655322 347899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..+..+.++... .|.+|+..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~ 504 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNALLL 504 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHHHh
Confidence 99999999999999999999999999999999999999888888888777766665553 66666554
No 210
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=3e-08 Score=81.69 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=84.5
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
..++++|.+++..++|++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008689 529 MKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 529 ~~~~~~~~~~~~~~mf~ 545 (557)
+.+..+... .|.+...
T Consensus 85 ~~~~~~A~~-~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKR-TYEEGLK 100 (118)
T ss_dssp TTCHHHHHH-HHHHHHT
T ss_pred HhhHHHHHH-HHHHHHH
Confidence 766655443 5555543
No 211
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=2e-08 Score=85.01 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
...+.++|.++...++|++|+..+++++..+|.+..+++.+|.+|..++++++|+..|+++++++|++..+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008689 528 KMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~ 545 (557)
.+.+..+... .|.+.+.
T Consensus 96 ~~~~~~~A~~-~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMD-VYQKALD 112 (133)
T ss_dssp HTTCHHHHHH-HHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHH
Confidence 7766665543 5555544
No 212
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.85 E-value=1.4e-08 Score=92.97 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=100.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+|+.+...... ......++.++|.+|..+++|++|+.++.+++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999998765432 1335667899999999999999999999999987
Q ss_pred ---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHHHHHH
Q 008689 478 ---DS----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP--DNRD----VKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 478 ---~p----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p--~n~~----~~~~l~~l~~~~~~~~~ 534 (557)
.+ ....+++++|.+|..+|++++|+..+++++.+.+ .+.. +...+..+...+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence 33 2367899999999999999999999999998743 2221 22445555544444443
No 213
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.85 E-value=2.3e-08 Score=87.25 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=92.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+|+.+.+..... .....++.++|.++..+++|++|+.++++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999988754321 234567889999999999999999999999876
Q ss_pred CC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 478 DS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 478 ~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
.+ ....+++.+|.+|..+|++++|++.+++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 32 22678999999999999999999999999988554
No 214
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.85 E-value=2.9e-08 Score=97.18 Aligned_cols=109 Identities=19% Similarity=0.118 Sum_probs=92.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|++|+..|.+++++........ ......++.++|.+|..+++|++|+.++++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567788899999999999999999999999864320000 02345668899999999999999999999999
Q ss_pred cc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 476 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.+ +|....+++.+|.+|..+|++++|+..|++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7777889999999999999999999999999985
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=8.5e-09 Score=89.41 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHHHHccC-C-CChHHHHHHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVLDLD-S-RNVKALYRRA 489 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~al~~~-p-~~~ka~~~~g 489 (557)
...+.+.|.+++...+. ...+.+|+|.|+.+.+ ++++++..++.+++.+ | ++..++|++|
T Consensus 14 l~~~~~~y~~e~~~~~~---------------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHTTCC---------------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 45566677776653221 1234779999999988 7789999999999998 7 6799999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
.+|+++++|++|+++++++|+++|+|..+......+..++++
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888877666643
No 216
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=2.7e-08 Score=84.08 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=83.4
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT 524 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~ 524 (557)
++++|.++++.++|++|+..+++++..+|++. .+++++|.+|..+|+|++|+..|+++++++|++ ..+...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 67899999999999999999999999999998 899999999999999999999999999999999 777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008689 525 LKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 525 l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
+...+.+..+... .|.++...
T Consensus 85 ~~~~~g~~~~A~~-~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQ-TLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHH-HHHHHHHH
Confidence 8777766665543 56655544
No 217
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.83 E-value=3.3e-08 Score=100.70 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..++..|+|++|+..|.+|+.+.+..... .....++.++|.+|..++++++|+.++++++.
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 345678889999999999999999999999998764321 23455788999999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 008689 477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKK 535 (557)
Q Consensus 477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~ 535 (557)
+.+.. ..+++++|.+|..+|++++|+..|++++++.+.. ..+...+..+...+.+..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 87665 7899999999999999999999999999986544 34555566665555544443
No 218
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.80 E-value=8.5e-08 Score=103.54 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=114.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------HHH-HHHH------HHHHHHHhhHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EEK-KQAK------ALKVACNLNNAACKL 459 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------~~~-~~~~------~~~~~~~~nla~~~~ 459 (557)
...+...|..+++.|++++|+..|++++...+.+..... ++. .... .....++++++.+|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 455677899999999999999999999987765433210 000 0011 112456788999999
Q ss_pred hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
+.|++++|+..++++++++|.+..+|+.++.+|...|++++|++.|++++++.|++..+...+..+..+..+.++... .
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-Y 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999988888888887777766666553 6
Q ss_pred HHHHhhh
Q 008689 540 YGNMFAK 546 (557)
Q Consensus 540 ~~~mf~~ 546 (557)
|.+|...
T Consensus 464 ~~~~~~~ 470 (597)
T 2xpi_A 464 LQSSYAL 470 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 219
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.80 E-value=3.1e-08 Score=97.57 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=100.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|++|+...+.+. .....++.++|.+|..+++|++|+.++++++.+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999854321 234567889999999999999999999999887
Q ss_pred ------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 008689 478 ------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR------DVKLEYKTLKEKMKE 531 (557)
Q Consensus 478 ------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~------~~~~~l~~l~~~~~~ 531 (557)
.+....+++.+|.+|..+|++++|+..|++++++.+... .+...+..+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 455688999999999999999999999999999866442 255555555555555
No 220
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.80 E-value=3.9e-08 Score=96.87 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=111.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+..+...|..++..|+|++|+..|.+++++.+..... .....++.++|.+|..++++++|+.++++++.
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999999987754321 33455789999999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
+.+.. ..+++.+|.+|..+|++++|+..|++++.+.+.. ..+...+..+...+.+.++.. ..|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~ 330 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKHL 330 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence 86655 7899999999999999999999999999986543 235556666666665555544 3566655
Q ss_pred hhc
Q 008689 545 AKM 547 (557)
Q Consensus 545 ~~~ 547 (557)
...
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 543
No 221
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=6.3e-08 Score=83.58 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=84.9
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
..++++|.+++..++|++|+..++++++.+|++ ..+++++|.+|..+++|++|+..|+++++++|++..+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 347789999999999999999999999999998 99999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008689 526 KEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 526 ~~~~~~~~~~~~~~~~~mf~~ 546 (557)
...+.+..+... .|.+.+..
T Consensus 109 ~~~~~~~~~A~~-~~~~al~~ 128 (148)
T 2dba_A 109 LEKLGRLDQAVL-DLQRCVSL 128 (148)
T ss_dssp HHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHH-HHHHHHHc
Confidence 877766665543 55555443
No 222
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=9.6e-08 Score=80.09 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=86.2
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
....+.++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008689 527 EKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 527 ~~~~~~~~~~~~~~~~mf~~ 546 (557)
..+.+..+... .|.+.+..
T Consensus 91 ~~~~~~~~A~~-~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVA-YYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHH-HHHHHHHH
T ss_pred HHhCCHHHHHH-HHHHHHhc
Confidence 77766655543 55555443
No 223
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=8.9e-08 Score=84.40 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=86.1
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
....+.++|.+++..++|++|+..+.+++..+|.+..+++++|.++..+|+|++|+..|+++++++|++..+...+..+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008689 527 EKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 527 ~~~~~~~~~~~~~~~~mf~~ 546 (557)
..+.+..+... .|.+.+..
T Consensus 92 ~~~~~~~~A~~-~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALR-DYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHH-HHHHHHHH
T ss_pred HHhccHHHHHH-HHHHHHHh
Confidence 77766655443 55555443
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.77 E-value=9.4e-08 Score=99.01 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=97.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
....+....+.+...-..|+|++|+..|.+|+......-... ....+..++|||.+|..+|+|++|+.+++++
T Consensus 294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 334455555666666667899999999999999865432111 1345677899999999999999999999999
Q ss_pred Hcc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008689 475 LDL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTL 525 (557)
Q Consensus 475 l~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~~l~~l 525 (557)
|.+ +|+-...|+++|.+|..+|+|++|+..|++|+++ .|+++.+......+
T Consensus 367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 974 3444778999999999999999999999999975 68888776655544
No 225
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=5.6e-08 Score=96.23 Aligned_cols=111 Identities=12% Similarity=0.022 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (557)
.+...|..+.+.|++++|...|++|+++.+.+.. .++.+++.++.+++++++|+..++++++.+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 4556777777778888888888888876543321 02444455555555555555555555554444
Q ss_pred ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 481 NVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 481 ~~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+..+|...+..... +|++++|++.|++|++++|++..+...+..+
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 212 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 212 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444433333221 3444455555555544444444444443333
No 226
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=1.2e-07 Score=86.99 Aligned_cols=98 Identities=13% Similarity=0.001 Sum_probs=84.8
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~----------------ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
....+.++|.++++.++|++|+..+++++.+.|.+. .+++++|.+|..+|+|++|+.+|+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344578999999999999999999999999999887 8999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 511 l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
++|++..+...+..+...+.+..+... .|++.+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~ 150 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKE-NLYKAAS 150 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHH-HHHHHHH
Confidence 999999888888888777766665543 4554443
No 227
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.75 E-value=3.6e-08 Score=100.47 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=101.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~- 477 (557)
+..+...|..++..|+|++|+..|++++...+.+. .....++.++|.+|..+++|++|+.++++++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999854321 234567899999999999999999999999887
Q ss_pred -----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHH
Q 008689 478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKE 531 (557)
Q Consensus 478 -----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~ 531 (557)
.|....+++.+|.+|..+|++++|+..|++++.+.|.. ..+...+..+...+.+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 45568899999999999999999999999999987653 2355566666655555
No 228
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.75 E-value=3.6e-08 Score=101.12 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=106.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|+..|.+|+++.+..... .....++.++|.+|..+++|++|+.++++++.+
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34577789999999999999999999999998764321 234556889999999999999999999999988
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 478 ~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
.+.. ..+++.+|.+|..+|++++|+..|++++.+.+.. ..+...+..+...+.+.++.. ..|++.+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 370 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL-KYAEQHL 370 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 7654 7899999999999999999999999999886543 234555555555554444433 2444443
No 229
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=1.1e-07 Score=79.02 Aligned_cols=98 Identities=28% Similarity=0.370 Sum_probs=85.0
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
..++.++|.++...++|++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008689 528 KMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~~ 546 (557)
.+.+.++.. ..|.+++..
T Consensus 89 ~~~~~~~A~-~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAI-EYYQKALEL 106 (125)
T ss_dssp HTTCHHHHH-HHHHHHHHH
T ss_pred HhcCHHHHH-HHHHHHHHh
Confidence 666555544 355555543
No 230
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.1e-07 Score=91.95 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 450 CNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 450 ~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
+++++|.+|.. .+++++|+.++++++..+ +..+++++|.+|.. .+++++|+.+|++|++++ +..+...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 35566666666 666666666666666552 55666666666666 666666666666666654 3344445
Q ss_pred HHHHHHH
Q 008689 522 YKTLKEK 528 (557)
Q Consensus 522 l~~l~~~ 528 (557)
+..+...
T Consensus 152 lg~~~~~ 158 (273)
T 1ouv_A 152 LGSLYDA 158 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5544443
No 231
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=6.7e-08 Score=94.46 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
.+.++|.++++.++|++|+..+++++..+|++..+++++|.+|..+|+|++|+.+|++|++++|++..+...+..+...+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHhh
Q 008689 530 KEYNKKEAKFYGNMFA 545 (557)
Q Consensus 530 ~~~~~~~~~~~~~mf~ 545 (557)
.+..+... .|.+.+.
T Consensus 86 g~~~~A~~-~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIA-NLQRAYS 100 (281)
T ss_dssp TCHHHHHH-HHHHHHH
T ss_pred CCHHHHHH-HHHHHHH
Confidence 76666553 4554443
No 232
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=7.1e-08 Score=81.00 Aligned_cols=96 Identities=22% Similarity=0.247 Sum_probs=82.7
Q ss_pred HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 008689 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-------RDVKLE 521 (557)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n-------~~~~~~ 521 (557)
..++++|.++...++|++|+..+.+++..+|.+..+++++|.+|..+|++++|+..|++++.+.|++ ..+...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999998877 777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 522 YKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+..+...+.+..+.. ..|.+++.
T Consensus 85 la~~~~~~~~~~~A~-~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAI-HFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHhccHHHHH-HHHHHHHH
Confidence 777777666655544 35555554
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.70 E-value=2.5e-07 Score=95.99 Aligned_cols=126 Identities=8% Similarity=-0.030 Sum_probs=98.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+......-..+.++|+|++|+..|.++++.....-... ....+..+.|+|.+|..+|+|++|+.+|.++|.
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3455556666778889999999999999998644321111 134667789999999999999999999999987
Q ss_pred c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 008689 477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~~l~~l~~~~ 529 (557)
+ +|.-...|+++|.+|..+|+|++|+..|++|+++ .|+++.+...+..+....
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 4 3444778999999999999999999999999975 788887776655554433
No 234
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=1.4e-07 Score=93.32 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=89.9
Q ss_pred hhhHHHHHHHH-------HcCcH-------HHHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH
Q 008689 400 GKKKEQGNTLF-------KAGKY-------ARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464 (557)
Q Consensus 400 ~~~k~~G~~~~-------~~~~y-------~~A~~~y~~Al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~ 464 (557)
..+...|..+. +.|++ ++|+..|++|+. +.|.+. .++.++|.++.+++++
T Consensus 51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---------------~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------------LLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHhcCCH
Confidence 34445555554 45775 999999999999 555332 3488999999999999
Q ss_pred HHHHHHHHHHHccCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 465 KQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 465 ~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
++|+..++++++++|.+.. +|+++|.++..+|++++|++.|++|++++|.+..+....
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999886555433
No 235
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.65 E-value=8.4e-09 Score=108.93 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=87.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|++|+++.+... .+++|+|.+|.++++|++|+.+++++++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------------KGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999866433 348899999999999999999999999999
Q ss_pred CCChHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 008689 479 SRNVKALYRRAQA--YIQMADLDLAEFDIK-----------KALEIDPDN 515 (557)
Q Consensus 479 p~~~ka~~~~g~a--~~~lg~~~~A~~~~~-----------~al~l~p~n 515 (557)
|++..+++.++.+ +..++++++|++.++ +++.++|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999 899999999999999 888888764
No 236
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=98.65 E-value=9.8e-09 Score=104.59 Aligned_cols=85 Identities=12% Similarity=0.264 Sum_probs=73.6
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (557)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ 244 (557)
..+..||.|++||++.. +|+.|+++ .++.|.+|.|++++||+++|.||+.|+++.|.||....||..+
T Consensus 159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~--------- 228 (392)
T 1t11_A 159 EAAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN--------- 228 (392)
T ss_dssp CCCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT---------
T ss_pred CCCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC---------
Confidence 35789999999999995 89999876 8899999999999999999999999999999997334677543
Q ss_pred CCCCCeEEEEEEeecccc
Q 008689 245 VPPNATLQIALELVSWKT 262 (557)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (557)
.++.+++|+|+|+++..
T Consensus 229 -laGk~~~F~V~v~~i~~ 245 (392)
T 1t11_A 229 -LKGKAAKFAIKVNKVEA 245 (392)
T ss_dssp -TSSCEEEECCCEEEEEE
T ss_pred -CCCCeEEEEEEEEEEEc
Confidence 35899999999999864
No 237
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.65 E-value=6.7e-08 Score=101.14 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=97.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCHHHHHHHHHHHHc
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKLCTKVLD 476 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~~~~~~al~ 476 (557)
+..+.+.|..++..|+|++|+..|.+|+.+.+....... .....++.++|.+++++ ++|++|+.++++|++
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 445678999999999999999999999998775432110 00223477888777765 479999999999999
Q ss_pred cCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~---lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
++|+++.+++.+|.++.. .+++++|++.|++|++++|++..+...+....
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 999999999999988655 46778999999999999999988777766443
No 238
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=4.2e-07 Score=87.74 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689 449 ACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKL 520 (557)
Q Consensus 449 ~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~ 520 (557)
.+++++|.+|.. .+++++|+.+++++++.+ +..+++++|.+|.. .+++++|+..|+++++++ +..+..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 186 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF 186 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 457788888888 888888888888888865 67888888888888 888888888888888774 455666
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHh
Q 008689 521 EYKTLKEK----MKEYNKKEAKFYGNMF 544 (557)
Q Consensus 521 ~l~~l~~~----~~~~~~~~~~~~~~mf 544 (557)
.+..+... ....++.. ..|++..
T Consensus 187 ~lg~~~~~g~~~~~~~~~A~-~~~~~a~ 213 (273)
T 1ouv_A 187 NAGNMYHHGEGATKNFKEAL-ARYSKAC 213 (273)
T ss_dssp HHHHHHHHTCSSCCCHHHHH-HHHHHHH
T ss_pred HHHHHHHcCCCCCccHHHHH-HHHHHHH
Confidence 67766665 44444433 2444444
No 239
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=2.7e-07 Score=89.24 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC--
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-- 478 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-- 478 (557)
.....|..+++.++|..|+..|.+++..... .+...+++++|.++..+|++++|+.++.+++.-.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 5677888999999999999999866543210 1223458899999999999999999999998654
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 479 SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 479 p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
|. ...+++++|.|+.++|+.++|+..|++++..+|+ ..+...|.
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 55 6779999999999999999999999999999999 77766654
No 240
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=2.8e-07 Score=99.20 Aligned_cols=116 Identities=13% Similarity=0.010 Sum_probs=104.2
Q ss_pred HhhhHHHHHHHHHcCc----------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHH
Q 008689 399 AGKKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ 466 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~----------y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~ 466 (557)
...+..+|..+.+.++ |++|+..|.+|++..|.+.. ++++++.+..+++ +|++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------------aW~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcccccHHH
Confidence 4566777888877777 99999999999998776543 3889999999999 7899
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
|+..|++++++||.|..||+.|+.++..++ .+++|+++++++++++|.|..++.....+..++
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999999999999999999988887765
No 241
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.60 E-value=3.8e-07 Score=74.61 Aligned_cols=79 Identities=25% Similarity=0.216 Sum_probs=69.6
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~ 523 (557)
++.+|..++++++|..|+.++++|+... +.....+..+|.||.++|++++|+..+++|++++|++..+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 5689999999999999999999999853 346788999999999999999999999999999999988877777
Q ss_pred HHHHHH
Q 008689 524 TLKEKM 529 (557)
Q Consensus 524 ~l~~~~ 529 (557)
.+...+
T Consensus 88 ~~~~~~ 93 (104)
T 2v5f_A 88 YFEYIM 93 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 242
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.60 E-value=1.5e-07 Score=95.88 Aligned_cols=95 Identities=24% Similarity=0.191 Sum_probs=83.6
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHc----------------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLD----------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~----------------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
.+.++|.+++++++|++|+..|+++|+ ++|.+..+|+++|.+|..+++|++|+++|++|++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 377999999999999999999999998 7888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 514 DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 514 ~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
++..+...+..+...+.+.++... .|++.+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~ 335 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALA-DLKKAQE 335 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHH-HHHHHHH
Confidence 999988888888877776665543 5555443
No 243
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.60 E-value=5.4e-08 Score=81.30 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=71.8
Q ss_pred hhhCHHHHHHHHHHHHcc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689 460 KLKDYKQAEKLCTKVLDL---DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (557)
Q Consensus 460 k~~~~~~A~~~~~~al~~---~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~ 536 (557)
.+|+|++|+.++++++++ +|++..+++++|.+|..+|+|++|++.|+++++++|++..+...+..+...+.+.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999988887776655
Q ss_pred HHHHHHHhhh
Q 008689 537 AKFYGNMFAK 546 (557)
Q Consensus 537 ~~~~~~mf~~ 546 (557)
. .|.+.+..
T Consensus 82 ~-~~~~al~~ 90 (117)
T 3k9i_A 82 E-LLLKIIAE 90 (117)
T ss_dssp H-HHHHHHHH
T ss_pred H-HHHHHHHh
Confidence 3 55555443
No 244
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.2e-07 Score=82.36 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=91.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|+|++|+..|.+|+.+....... ......+++|+|.+|..+|+|++|+.++.+++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456778899999999999999999999999997644322 12345678999999999999999999999998
Q ss_pred ccCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689 476 DLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 476 ~~~p--~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p 513 (557)
.+.+ .+ ..++.++|.+|..+|++++|++.|++|+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7532 12 44678999999999999999999999998743
No 245
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.59 E-value=1.9e-07 Score=81.75 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=66.4
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~----------~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
-++++|++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++.++...+..+...
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999999876 599999999999999999999999988877
Q ss_pred HH
Q 008689 529 MK 530 (557)
Q Consensus 529 ~~ 530 (557)
+.
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 246
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=2e-07 Score=86.90 Aligned_cols=129 Identities=14% Similarity=0.019 Sum_probs=91.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc----------CC-C--ChHHHH-----HHHHHHHHHHhhHHHHHHh
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------TS-F--GDEEKK-----QAKALKVACNLNNAACKLK 460 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~----------~~-~--~~~~~~-----~~~~~~~~~~~nla~~~~k 460 (557)
+..+...|..++..+++.+|+..|++|++..... .. . ..++.. ..+.-...+++|||.+|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 5667788889999999999999999988742110 00 0 111100 0111134457788888887
Q ss_pred ----hhCHHHHHHHHHHHHccCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 461 ----LKDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 461 ----~~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
.+++++|+.++.++++..+ .++.+++++|.+|.. .+++++|+.+|++|.++ |.+..+...|..+...
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 7888888888888888877 358888888888888 77888888888888888 6676677777766544
No 247
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=2.6e-07 Score=86.06 Aligned_cols=76 Identities=14% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCCCCHH
Q 008689 448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-A-----DLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-g-----~~~~A~~~~~~al~l~p~n~~ 517 (557)
..+++|||.+|.. .+++++|+.+++++++. +.+..+++++|.+|... + ++++|+.+|++|.+.. +..
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~ 201 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDT 201 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHH
Confidence 4568999999999 89999999999999998 77888999999999875 3 8999999999999985 555
Q ss_pred HHHHHHHHH
Q 008689 518 VKLEYKTLK 526 (557)
Q Consensus 518 ~~~~l~~l~ 526 (557)
+...+..+.
T Consensus 202 A~~~l~~l~ 210 (212)
T 3rjv_A 202 GCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777776664
No 248
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=5.4e-07 Score=96.94 Aligned_cols=137 Identities=10% Similarity=-0.011 Sum_probs=107.9
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC--------
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------- 463 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------- 463 (557)
..+++.-.........+.+.++| ++|+..|.+++.+.|.... ++++++.+..++++
T Consensus 22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t---------------aW~~R~~~l~~l~~~~~~~~~~ 86 (567)
T 1dce_A 22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT---------------LWNCRREVLQHLETEKSPEESA 86 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHhcccccchhhhh
Confidence 34444444444455555566654 5779999999999886543 38899999999998
Q ss_pred --HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 464 --YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (557)
Q Consensus 464 --~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~ 539 (557)
|++++..++++++.+|.+..||+.|+.++..++ +|++|++.++++++++|.|..++...+-+..++....+.+-+.
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999999999999999 7799999999999999999988888877766665222334344
Q ss_pred HHHHh
Q 008689 540 YGNMF 544 (557)
Q Consensus 540 ~~~mf 544 (557)
+.++.
T Consensus 167 ~~~~I 171 (567)
T 1dce_A 167 TDSLI 171 (567)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 44443
No 249
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.53 E-value=8.7e-07 Score=72.42 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=70.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+.+.|..+|+.++|..|+.-|.+|++..+...... .....++.++|.||.++|+++.|+.++++++.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45577899999999999999999999999876442110 1144668899999999999999999999999999
Q ss_pred CCChHHHHHHH
Q 008689 479 SRNVKALYRRA 489 (557)
Q Consensus 479 p~~~ka~~~~g 489 (557)
|++..++.+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 99999988886
No 250
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=2.3e-07 Score=83.50 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=91.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHH------HHHHHHHhh
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLN 453 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~--------------~~~~~~~~~------~~~~~~~~n 453 (557)
.....+..+...|..+++.|++++|+..|++++...| +... ..+.....+ .-...++++
T Consensus 35 ~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 35 ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence 3444567788899999999999999999999877654 2110 000011111 112567889
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+|.++..+|++++|+..+.++++.+|++ ..+++++|.++..+|++++|+..|++++.
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999976 66999999999999999999999999875
No 251
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=1.4e-06 Score=85.94 Aligned_cols=113 Identities=12% Similarity=-0.136 Sum_probs=71.6
Q ss_pred HhhhHHHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH----Hhh---hCHHHHHH
Q 008689 399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK 469 (557)
Q Consensus 399 a~~~k~~G~~~~~~~--~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~---~~~~~A~~ 469 (557)
......+|..+...+ ++++|+..+.+++...|.+... +++++.+. .++ +++++++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a---------------W~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI---------------WNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH---------------HHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH---------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence 455677888888887 9999999999999887755432 44444444 333 45566666
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLD--LAEFDIKKALEIDPDNRDVKLEYKTLK 526 (557)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~--~A~~~~~~al~l~p~n~~~~~~l~~l~ 526 (557)
.|+++|+.+|.|..||+.|+.++..++.++ ++++.+.++++.+|.|-.+......+.
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666666666666666666666666666555 666666666666666655554444443
No 252
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=1e-06 Score=86.85 Aligned_cols=123 Identities=19% Similarity=0.116 Sum_probs=102.0
Q ss_pred HHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHHHHHHHHHHHccCCCChHH
Q 008689 408 TLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKA 484 (557)
Q Consensus 408 ~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka 484 (557)
...+.+.| ++|+.++.++|.+.|...+ ++++++.+...++ .+++++..++++|..+|.+..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~t---------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYT---------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHH---------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 33445555 6999999999999886554 3889999999999 9999999999999999999999
Q ss_pred HHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 008689 485 LYRRAQAY----IQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-KKEAKFYGNMFA 545 (557)
Q Consensus 485 ~~~~g~a~----~~l---g~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~-~~~~~~~~~mf~ 545 (557)
|+.|+.++ ..+ ++++++++.+.++++.+|.|-.+....+-+..++.... ..+...+.+++.
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 99999999 777 89999999999999999999988888777766665432 244455666654
No 253
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.46 E-value=2.7e-06 Score=86.02 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
.+..+...|..++..|+|++|...|.+|+.+.+..... .....+++++|.++..+|+|.+|+.++.+++.+
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999987754321 123455778899999999999999999998876
Q ss_pred C--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 478 D--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 478 ~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
. |....++.++|.+|..+|++++|+..+++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4 334567788899999999999999999999988775
No 254
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.42 E-value=1.2e-06 Score=73.02 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=83.2
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH---HHHHHHHHHccC-C-CChHHHHH
Q 008689 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ---AEKLCTKVLDLD-S-RNVKALYR 487 (557)
Q Consensus 413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~---A~~~~~~al~~~-p-~~~ka~~~ 487 (557)
.....+.+.|.+++.... . ...+.+|+|.|+.+.++... +|..+...+..+ | .+-.++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~----~-----------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~ 79 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS----V-----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC----C-----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC----C-----------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 344556666776655322 1 12346799999999887776 999999999887 5 57889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~ 531 (557)
+|.+|+++|+|++|+..++..|+++|+|..+..+...+..++.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988888877776643
No 255
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.41 E-value=1.5e-06 Score=69.33 Aligned_cols=68 Identities=19% Similarity=0.040 Sum_probs=61.3
Q ss_pred HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
++..+|.+++..++ ..+|...++++|.+||++++|++.+|.++...|+|++|+..+++++..+|.+..
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 36678888866655 799999999999999999999999999999999999999999999999999543
No 256
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=3e-06 Score=84.53 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=102.0
Q ss_pred HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 411 ~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
+....++|+..+.++|.+.|.... +++.++.+...++ .+++++..++++|..+|.+..+|+.|+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~yt---------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYT---------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 345567999999999999886543 3888999999999 599999999999999999999999999
Q ss_pred HHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 008689 490 QAYIQM-A-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-------KKEAKFYGNMFA 545 (557)
Q Consensus 490 ~a~~~l-g-~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~-------~~~~~~~~~mf~ 545 (557)
.++..+ + +++++++.++++++++|.|-.+....+-+...+.... ..+-..+.+++.
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 999999 8 9999999999999999999988888777777766554 355556666654
No 257
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=6.2e-06 Score=81.82 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 492 (557)
+.+++..+..++...|.+.. ++++++.+..+++ .|++++..|+++|+.+|.|..||+.|+.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78999999999988775543 3889999999998 499999999999999999999999999999
Q ss_pred HhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 493 IQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 493 ~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
..++. ++++++++.++++.+|.|..+......+...+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999 69999999999999999999998888877666
No 258
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.34 E-value=9.5e-07 Score=71.45 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=65.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..+++.|+|++|+..|++|+++.|.... +++++|.||.+++++++|+..+++++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------------TYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556789999999999999999999999999876553 38899999999999999999999999886
Q ss_pred CC--ChHHHHHHHHHHH
Q 008689 479 SR--NVKALYRRAQAYI 493 (557)
Q Consensus 479 p~--~~ka~~~~g~a~~ 493 (557)
|. +..+...+...+.
T Consensus 72 ~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHH
Confidence 54 3444444444443
No 259
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.34 E-value=2.8e-06 Score=73.22 Aligned_cols=97 Identities=11% Similarity=-0.059 Sum_probs=79.7
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCC
Q 008689 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~ 480 (557)
.|..++..+.+.+|+..|++|++.-. ..+++|||.+|.. .+++++|+.+++++.+. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 77777777888889999999987621 2347899999998 89999999999999886 6
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 481 NVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 481 ~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
++.|++++|.+|.. .+++++|+.+|++|.++. +..+...|
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 89999999999999 899999999999999884 44444433
No 260
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.33 E-value=3.5e-06 Score=69.63 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
.|+..++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|.+.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 578999999999999999999999999999999999999999999999999988888888777766555442 444443
No 261
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=3.5e-06 Score=83.62 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=96.4
Q ss_pred HHHHHHcCcHH-HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC----------HHHHHHHHHHH
Q 008689 406 GNTLFKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCTKV 474 (557)
Q Consensus 406 G~~~~~~~~y~-~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~----------~~~A~~~~~~a 474 (557)
-....+.++|. +|+..+.+++.+.|..... ++.++.+...++. +++++..++.+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta---------------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 33334567766 7999999999988765433 6667776666655 79999999999
Q ss_pred HccCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 475 LDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
|..+|.|..+|+.|+.++..++. ++++++.+.++++++|.|-.+....+-+...+....+.+-..+.+++
T Consensus 101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 99999999999999999999994 99999999999999999998888777666555432233434444444
No 262
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.1e-06 Score=84.94 Aligned_cols=127 Identities=12% Similarity=-0.022 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC-
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN- 481 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~- 481 (557)
...+..+...|+|++|...|..++...|. .. .++++|.++++.++|.+|+.++.+++...++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 44577888899999999999877653321 11 47899999999999999999999888763221
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689 482 -VKALYRRAQAYIQMADLDLAEFDIKKALEID--PD-NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 482 -~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--p~-n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
..++|.+|.++..+|++++|+..|++++.-. |. ..++...+..+..++.+.++... .|++++..
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhc
Confidence 4589999999999999999999999998654 55 45677778888777777666553 66666654
No 263
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.29 E-value=1e-06 Score=86.20 Aligned_cols=113 Identities=12% Similarity=-0.049 Sum_probs=89.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-------------CChHHHHHH------HHHHHHHHhhHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACK 458 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-------------~~~~~~~~~------~~~~~~~~~nla~~~ 458 (557)
.+..+...|..+.+.|++++|+..|.+++...+.... ...+..... ..-...+++++|.++
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3567788889999999999999999888765442100 000011111 112346789999999
Q ss_pred HhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
..+|++++|+..+.++++.+|++ ..++.+++.++..+|+.++|...|++++.
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999985
No 264
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.27 E-value=3.9e-06 Score=89.56 Aligned_cols=116 Identities=12% Similarity=0.036 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (557)
..+...|..+.+.|++++|...|.+|+...+.+. ..++.+++.++.+++++++|+..+++|++..|
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 3455677788888999999999999998654321 01356666666666777777777777776666
Q ss_pred CChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 480 RNVKALYRRAQA-YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 480 ~~~ka~~~~g~a-~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
.+...+...+.. +..+|++++|+..|+++++.+|++..+...+..+...+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 666665555444 33466777777777777777776666665555554433
No 265
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=3.7e-06 Score=83.87 Aligned_cols=116 Identities=9% Similarity=-0.126 Sum_probs=101.2
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-h-CHHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-K-DYKQAEKLCTKVL 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~-~~~~A~~~~~~al 475 (557)
......++..+...+ .+++|+..+.+++...|.+.. ++++++.+..++ + ++++++..|+++|
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 345667888888888 599999999999988775543 378899998888 7 8999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLD--------LAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~--------~A~~~~~~al~l~p~n~~~~~~l~~l~~~~ 529 (557)
+.+|.|..||+.|+.++..++.++ ++++.++++++.+|.|..+......+...+
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999988 999999999999999998888877775554
No 266
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=5e-06 Score=87.46 Aligned_cols=110 Identities=12% Similarity=0.004 Sum_probs=91.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..+..+.+.|..|..+|+|++|+.+|.+|+......-... .......++|||.+|..+|+|++|+.++.+||
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999865432111 13456678999999999999999999999998
Q ss_pred cc-----CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 476 ~~-----~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
++ .|++ .+.+-.+++++..++.|++|...|.+|.+-.
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 4555 6677789999999999999999999987543
No 267
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.16 E-value=2e-05 Score=79.57 Aligned_cols=138 Identities=9% Similarity=-0.037 Sum_probs=102.2
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
...+..+...|..++..|++++|+..+.+|+...+... ......+++++|.+|...|+|++|+..+.+++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34466677889999999999999999999998764221 12345568899999999999999999999999
Q ss_pred ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDP--------DNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (557)
Q Consensus 476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p--------~n~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (557)
.+.+.. ..+++++|.++..+|++++|+..|++++.+.+ ....+...+..+...+.+..+... .+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~ 159 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SAR 159 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHH
Confidence 875433 34578999999999999999999999998753 222344445555544444444332 444
Q ss_pred HHh
Q 008689 542 NMF 544 (557)
Q Consensus 542 ~mf 544 (557)
+.+
T Consensus 160 ~al 162 (373)
T 1hz4_A 160 SGI 162 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 268
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.16 E-value=1.3e-05 Score=84.65 Aligned_cols=78 Identities=21% Similarity=0.084 Sum_probs=67.8
Q ss_pred HHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---CH
Q 008689 448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD---NR 516 (557)
Q Consensus 448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~---n~ 516 (557)
..+++++|.+|.. .+++++|+.+++++++. .+..+++++|.+|.. .+++++|+.+|++|++.+|+ +.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 440 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE 440 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence 3458899999999 89999999999999986 479999999999999 89999999999999999955 77
Q ss_pred HHHHHHHHHHH
Q 008689 517 DVKLEYKTLKE 527 (557)
Q Consensus 517 ~~~~~l~~l~~ 527 (557)
.+...+..+..
T Consensus 441 ~a~~~l~~~~~ 451 (490)
T 2xm6_A 441 NRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTTSCH
T ss_pred HHHHHHHhcCH
Confidence 77777766543
No 269
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.15 E-value=1.8e-05 Score=84.36 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-------hhCHH-------HHHHHHHHHHc-cCCC
Q 008689 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYK-------QAEKLCTKVLD-LDSR 480 (557)
Q Consensus 416 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~-------~A~~~~~~al~-~~p~ 480 (557)
.+|+..|++|+...|.+. .+++++|..+.+ +|+++ +|+..+++|++ ++|+
T Consensus 255 ~~a~~~y~~al~~~p~~~---------------~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHP---------------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 578889999999887654 337788888876 78877 99999999997 8999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (557)
+..+++.+|..+..+|++++|++.|++++++.|.+. .+...+..+..+....++. ++.|.+..+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al~ 384 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARE 384 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHHh
Confidence 999999999999999999999999999999999985 5777777666555544433 345555544
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.09 E-value=2.2e-05 Score=65.54 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=71.3
Q ss_pred HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+.+|+|.|..+.++ ..+++..+...++.+|. .-..+|.+|.+|.++|+|++|+++.+.+|+++|+|..+..+...+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 36688888887765 45789999999988884 488999999999999999999999999999999999988888888
Q ss_pred HHHHHHH
Q 008689 526 KEKMKEY 532 (557)
Q Consensus 526 ~~~~~~~ 532 (557)
..++.+.
T Consensus 122 e~ki~kd 128 (134)
T 3o48_A 122 EDKIQKE 128 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777543
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.06 E-value=4e-05 Score=64.85 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=69.3
Q ss_pred HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
+.+|+|.|..+.++ -.+++..+...+..+|. .-.++|.+|.+|+++|+|++|+++.+..|+++|+|.++..+...+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 36688888888775 45789999999988884 578999999999999999999999999999999999888887777
Q ss_pred HHHHH
Q 008689 526 KEKMK 530 (557)
Q Consensus 526 ~~~~~ 530 (557)
..++.
T Consensus 121 e~~i~ 125 (144)
T 1y8m_A 121 EDKIQ 125 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 272
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.05 E-value=2.8e-05 Score=89.05 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC-
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (557)
.+...|..++..|+|++|+.+|.+|- -|..+|.||.++|+|++|++.+++|...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 45679999999999999999999872 177899999999999999999999855432
Q ss_pred ------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689 480 ------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 480 ------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~ 534 (557)
.++..+..++..|..+|.|++|+..|++++.++|.+..+..+|..+..+-+-.+-
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 1444566778889999999999999999999999998888888887666544443
No 273
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=98.03 E-value=5.1e-06 Score=85.68 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~ 131 (557)
.+..||.|+|+|+++ .||..|+++.. .++.|.+|.++ + |+++|.||++|++++|.+.. ++
T Consensus 154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG 213 (433)
T 3gty_X 154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG 213 (433)
T ss_dssp CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence 578999999999998 49999998754 68888999887 3 99999999999999999854 24
Q ss_pred CcEEEEEEEEEeeeccccccccceeeee
Q 008689 132 ATLQFDVELLSWTSVKDICKDGGIIKKI 159 (557)
Q Consensus 132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i 159 (557)
.+..|.|+|.+++.......+..+++.+
T Consensus 214 k~a~F~VtV~~Ik~~~lPEldDEfak~~ 241 (433)
T 3gty_X 214 KKYTYKLEVEEVYKRTLPEIGDELAKSV 241 (433)
T ss_dssp EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence 7999999999999877777777777654
No 274
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=3.7e-05 Score=66.08 Aligned_cols=94 Identities=16% Similarity=0.019 Sum_probs=80.8
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (557)
Q Consensus 412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 491 (557)
.+++.+|+..|++|++.-. ... . +|.+|.....+++|+.+++++.+. .++.|++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a---------------~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFG---------------C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTH---------------H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhh---------------h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3679999999999997642 111 3 899999999999999999999987 789999999999
Q ss_pred HHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689 492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (557)
Q Consensus 492 ~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~ 528 (557)
|.. .+++++|+++|++|.+. .+..+...|..+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999 89999999999999987 677788888887665
No 275
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.98 E-value=1.9e-05 Score=80.78 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC-
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (557)
.+...|+.++..|+|++|..+|.++ +. |.++|.|+.++|+|++|++.+.++. ++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR 178 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence 4555666666666666666666644 11 4556666666666666666666551 11
Q ss_pred --------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689 480 --------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 480 --------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~ 533 (557)
.++.-+..+...|.+.|++++|+..|++++.+++....+..+|..+..+.+-.+
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k 258 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 258 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 122234455678999999999999999999999999999999988876665444
Q ss_pred H
Q 008689 534 K 534 (557)
Q Consensus 534 ~ 534 (557)
-
T Consensus 259 ~ 259 (449)
T 1b89_A 259 M 259 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 276
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.96 E-value=8.4e-05 Score=78.24 Aligned_cols=93 Identities=18% Similarity=0.054 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHH
Q 008689 400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLC 471 (557)
Q Consensus 400 ~~~k~~G~~~~~----~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~ 471 (557)
..+...|..++. .+++.+|+..|++|++... ..++++||.+|.. .+++++|+.++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-----------------PQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 445556666666 6677777777777665311 1123445555544 44555555555
Q ss_pred HHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 008689 472 TKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEI 511 (557)
Q Consensus 472 ~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l 511 (557)
++++.. .++.+++++|.+|.. .+++++|++.|+++.+.
T Consensus 139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 554443 344455555555544 44455555555554443
No 277
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.1e-05 Score=77.42 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-----------------C-ChHHHHH-HH----------
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------------F-GDEEKKQ-AK---------- 444 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-----------------~-~~~~~~~-~~---------- 444 (557)
........+.+.|..|++.|+|++|+..|.+++.+.+.... . ..++... .+
T Consensus 50 ~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 50 RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 33445567889999999999999999999999887553211 0 0111100 00
Q ss_pred --HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689 445 --ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 445 --~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~ 514 (557)
.++..++.++|.+|..+|+|.+|+..+.+++.. .+....++...+.+|..+++|++|+..|++++.+.+.
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 023567788888888888898888888888764 2334678888888888889999998888888888543
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.86 E-value=0.00021 Score=62.20 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
..+++....++..+.|+.|+-.+..++.+...+... +. .....++..+|..++..++|..|+..|++||.+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999987665542 22 3345557889999999999999999999997642
Q ss_pred C---CC----------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 479 S---RN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 479 p---~~----------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
. .+ ...-|+.|.||.+++++++|+..++..-. .-.+..+...|+++
T Consensus 94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 1 11 25779999999999999999998765311 12344555566555
No 279
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00011 Score=75.47 Aligned_cols=102 Identities=8% Similarity=-0.031 Sum_probs=83.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
+..+...|..++..|+|.+|+..+.+++......... .....++++++.+|..+++|.+|...+++++...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 3455678888999999999999999988877654432 4567789999999999999999999999998753
Q ss_pred C---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 479 S---RN----VKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 479 p---~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+ .. ...+...|..|...++|++|..+|..++
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 22 4567788999999999999999998875
No 280
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.00032 Score=69.87 Aligned_cols=114 Identities=12% Similarity=-0.015 Sum_probs=83.7
Q ss_pred hHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcCCC-----------------ChHHHHHHHHH------------HHH
Q 008689 402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSF-----------------GDEEKKQAKAL------------KVA 449 (557)
Q Consensus 402 ~k~~G~~~~~~---~~y~~A~~~y~~Al~~~~~~~~~-----------------~~~~~~~~~~~------------~~~ 449 (557)
+.-+|..++.+ ..+.+|+.+|.+|+++.|..... .......+... ...
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 34444555443 45789999999999988753211 11111111111 122
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
+|.-+|.+++..+++++|+..+++|+.++| ++-+|..+|.++...|++++|++.|.+|+.++|...
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 344567778889999999999999999996 577889999999999999999999999999999875
No 281
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.83 E-value=7.3e-05 Score=78.02 Aligned_cols=121 Identities=17% Similarity=0.027 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHH------HHHHHHHhhHHHH
Q 008689 401 KKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLNNAAC 457 (557)
Q Consensus 401 ~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~--------------~~~~~~~~~------~~~~~~~~nla~~ 457 (557)
.+...|..+.+.| ++.+|+..|++|++..+..... ..+..+... .-...+++|+|.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4667888888889 9999999999998764432210 000000000 1112334555555
Q ss_pred -H--HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689 458 -K--LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----DLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 458 -~--~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-----~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~ 527 (557)
| ...+++++|+.+++++++. .++.|++++|.+|. .| ++++|+.+|++|. |++..+...|..+..
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 3 3455666666666665543 35566666666655 33 5666666666655 555555555554433
No 282
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.82 E-value=8.2e-05 Score=85.31 Aligned_cols=107 Identities=12% Similarity=-0.042 Sum_probs=83.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--hHHHHHHH-----HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAK-----ALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~-----~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.|..+.+.|.|++|+..|+++-.........- -..+++.. -....+|+++|.++.++|+|++|+..|.++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 348999999999999999999754322100000 00111111 123667999999999999999999999886
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
++..+|++.|.++.++|+|++|++.|.+|.+..++.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 788999999999999999999999999999998653
No 283
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00019 Score=62.06 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=63.4
Q ss_pred HhhhHHHHHHHHHcC---cHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 399 a~~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
....++.|..+.+.+ ++++|+..+...++.. | ..+..|++|||..|+++++|++|+++|+++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--------------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------------cchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356677888888877 7789999999888764 2 124456899999999999999999999999
Q ss_pred HccCCCChHHHHHHHH
Q 008689 475 LDLDSRNVKALYRRAQ 490 (557)
Q Consensus 475 l~~~p~~~ka~~~~g~ 490 (557)
|+++|+|..|..-+-.
T Consensus 98 L~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 98 LQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHH
Confidence 9999999888665443
No 284
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.76 E-value=0.00012 Score=70.00 Aligned_cols=87 Identities=15% Similarity=-0.004 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----hCHHHHHHHHHHHHccCCCC-hHHHHHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----KDYKQAEKLCTKVLDLDSRN-VKALYRR 488 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~~~~~A~~~~~~al~~~p~~-~ka~~~~ 488 (557)
...|...+.+|+++.|.. +.-.+|.-++..|.+. |+.++|..++++||+++|+. ..+++..
T Consensus 179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 566777777777776641 2345688999999996 99999999999999999975 9999999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCC
Q 008689 489 AQAYIQM-ADLDLAEFDIKKALEIDPD 514 (557)
Q Consensus 489 g~a~~~l-g~~~~A~~~~~~al~l~p~ 514 (557)
|..++.. +++++|.+.+++|+..+|.
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999985 9999999999999998877
No 285
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.69 E-value=0.00017 Score=75.21 Aligned_cols=75 Identities=20% Similarity=0.076 Sum_probs=63.3
Q ss_pred HHHHhhHHHHHHhhh-----CHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHH
Q 008689 448 VACNLNNAACKLKLK-----DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 448 ~~~~~nla~~~~k~~-----~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~ 518 (557)
..+++|||.+|. .| ++++|+.++.++. +.++.|++++|.+|.. ..++++|+.+|++|.+. .+..+
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence 345789999998 55 9999999999999 8999999999999988 45999999999999875 45557
Q ss_pred HHHHHHHHHH
Q 008689 519 KLEYKTLKEK 528 (557)
Q Consensus 519 ~~~l~~l~~~ 528 (557)
...|..+...
T Consensus 357 ~~~Lg~~y~~ 366 (452)
T 3e4b_A 357 DFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 7777777554
No 286
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.48 E-value=0.00024 Score=69.44 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-----
Q 008689 405 QGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL----- 477 (557)
Q Consensus 405 ~G~~~~~~~--~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~----- 477 (557)
.+...+..| +++.|...|.++....+... ...+++| |++++|+|++|...++.+++.
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWK-------------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-------------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-------------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 343345445 89999999999876544200 1112444 899999999999999988876
Q ss_pred -----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 478 -----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
+|+|+.++.++..+...+|+ +|.+.+.++.+++|+++.+...
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 58999999999999999998 9999999999999999865543
No 287
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.42 E-value=0.0007 Score=64.82 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 008689 463 DYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQM-----ADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEK 528 (557)
Q Consensus 463 ~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l-----g~~~~A~~~~~~al~l~p~n-~~~~~~l~~l~~~ 528 (557)
....|....++|+++||+ +..||..+|..|..+ |+.++|+++|++|++++|+. .++...+..-...
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 478899999999999999 677999999999996 99999999999999999975 7777777665433
No 288
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.00084 Score=69.29 Aligned_cols=94 Identities=9% Similarity=-0.036 Sum_probs=72.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
-+..+..+.+.|..|..+|+|++|+.+|.+++......-... .......++|||..|..+|+|++|+.++.+|
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345788899999999999999999999999999865422111 1345667899999999999999999999999
Q ss_pred Hcc-----CCCC---hHHHHHHHHHHHhc
Q 008689 475 LDL-----DSRN---VKALYRRAQAYIQM 495 (557)
Q Consensus 475 l~~-----~p~~---~ka~~~~g~a~~~l 495 (557)
+++ .|++ ...+.+++.++..+
T Consensus 398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 874 4555 44455566666543
No 289
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.29 E-value=0.00083 Score=65.61 Aligned_cols=122 Identities=7% Similarity=-0.031 Sum_probs=86.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (557)
+.-.|..++..|++++|++.+.+++...+.. ....++.-++.+++++++.+.|.+.+++..+.+|+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 3477888999999999999999987654310 02334667788999999999999999998888883
Q ss_pred ---ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 481 ---NVKALYRRAQA--YIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 481 ---~~ka~~~~g~a--~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
+...+..++.+ .+..| ++.+|...|+++....|+.......+. +..++.+..+.++
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 23445555555 66666 899999999998887776333333344 5555555555554
No 290
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.20 E-value=0.0051 Score=62.54 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=94.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~ 470 (557)
....+...|......++...|+..|.+|+.+..... .+...+...+...+..+...++.+++.++++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345556667777778999999999999999864321 1223456677788888899999999999999999999
Q ss_pred HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 471 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+.+++..+|-+..++..+-.||...|+..+|++.|+++-.
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988754
No 291
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0011 Score=68.28 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=64.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..+..+.+.|..|..+|+|++|+.+|++|+......-... .......++|||.+|..+|+|++|+.++++|+
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45678888999999999999999999999999865432111 13356668999999999999999999999998
Q ss_pred cc-----CCCCh
Q 008689 476 DL-----DSRNV 482 (557)
Q Consensus 476 ~~-----~p~~~ 482 (557)
++ .|+++
T Consensus 410 ~i~~~~lG~~Hp 421 (433)
T 3qww_A 410 AIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHTCTTCH
T ss_pred HHHHHHcCCCCh
Confidence 74 46664
No 292
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.00075 Score=53.46 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=57.3
Q ss_pred HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~---y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..+...|..++-.++ ..+|...+++|+.+.|.+.. .++.+|..+++.++|++|+.++++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------------A~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------------ALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677888875555 79999999999999887653 36789999999999999999999999
Q ss_pred ccCCCC
Q 008689 476 DLDSRN 481 (557)
Q Consensus 476 ~~~p~~ 481 (557)
..+|.+
T Consensus 71 ~~~p~~ 76 (93)
T 3bee_A 71 DSNDPN 76 (93)
T ss_dssp TCCCTT
T ss_pred hhCCCC
Confidence 999984
No 293
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.73 E-value=0.0052 Score=62.88 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHH------HHHHHHhhHHHHHHh
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKA------LKVACNLNNAACKLK 460 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------~~~~~~~~~~~~------~~~~~~~nla~~~~k 460 (557)
..-...+..+...|..+++.|+|+.|+..|.+|........ ... +...... ....-...+..+|.+
T Consensus 142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~--ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC--cHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 34445677888999999999999999999999943210000 000 0000000 000012246678999
Q ss_pred hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHH
Q 008689 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--MADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~p-----~n~~~~~~l~~l~~~~~~~~ 533 (557)
.|+|++|+..++++|.+++.+.-.+..+|.+|.+ .++..++++.|...+.+.| ++...+.++.-+.....+..
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 9999999999999999999999999999998887 4678889998888888877 67667777777766665555
Q ss_pred H
Q 008689 534 K 534 (557)
Q Consensus 534 ~ 534 (557)
.
T Consensus 300 ~ 300 (449)
T 1b89_A 300 N 300 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 294
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=96.65 E-value=0.0035 Score=64.46 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (557)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i 245 (557)
.+..||.|+++|.+.. +|..|+++ .++.+.+|++. + |+++|.||+.|+.+.|.+ .|
T Consensus 154 ~a~~gD~V~id~~~~~-dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v----tF-------------- 211 (433)
T 3gty_X 154 PAEAGDLVRVNMEVYN-EEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER----EY-------------- 211 (433)
T ss_dssp CCCTTSEEEEEEEEEC-TTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE----EE--------------
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE----ee--------------
Confidence 4678999999999884 88888866 56677788777 3 999999999999999998 23
Q ss_pred CCCCeEEEEEEeecccc
Q 008689 246 PPNATLQIALELVSWKT 262 (557)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (557)
+|.+..|.|+|.++..
T Consensus 212 -aGk~a~F~VtV~~Ik~ 227 (433)
T 3gty_X 212 -EGKKYTYKLEVEEVYK 227 (433)
T ss_dssp -TTEEEEEEEEEEEEEE
T ss_pred -CCCeEEEEEEEEEEEE
Confidence 2568899999999865
No 295
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.55 E-value=0.061 Score=58.62 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=91.7
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..+....+.+++++|...|.+++..++.. ...+++....+..-...++...+....+.+..+.|...+.+|+.
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555567889999999999999875311 11112222222222334566667777778888889998888887
Q ss_pred c-CCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 477 L-DSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 477 ~-~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
. .+...+.|...|..-...++ ++.|++.|+++++..|++......+......+.+. ..-+..|.+......
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~ 535 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKIS 535 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSS
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcC
Confidence 7 44556777666666666554 88888888888888888887765555544333222 233446666555443
No 296
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.49 E-value=0.017 Score=47.89 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 490 (557)
+-.|++.||..|+|+++|..|+.+|+.+|+.+|+|..|.--+..
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55668899999999999999999999999999999887654433
No 297
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.39 E-value=0.046 Score=46.18 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
+-.|++.||..|+|+++|..|+.+|+.+|+.+|+|..|.--+.
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4556889999999999999999999999999999977755443
No 298
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.36 E-value=0.016 Score=50.41 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=62.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH----HHH--H----HHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE----EKK--Q----AKALKVACNLNNAACKLKLKDYKQA 467 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~----~~~--~----~~~~~~~~~~nla~~~~k~~~~~~A 467 (557)
.+..+...|+.+|.+++|.+|...|++||.+.......... ... . ...--..+.+.+|.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 46778899999999999999999999999876532110000 000 0 0000123467899999999999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHH
Q 008689 468 EKLCTKVLDLDSRNVKALYRRAQAY 492 (557)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~g~a~ 492 (557)
+.....+-. .-..++...-+|+.|
T Consensus 142 i~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 998776422 234567766666654
No 299
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.35 E-value=0.04 Score=45.96 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 490 (557)
+-.|++.||..|+|+|+|..|+.+|+.+|+.+|+|..|.--+..
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 45668899999999999999999999999999999887654443
No 300
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.03 E-value=0.029 Score=61.12 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=93.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSR 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~ 480 (557)
+...++...+.++.+.|...|.+|+...+... . .+|...|....+.+ +++.|...+.++|+..|+
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~-------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-P-------------DIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-T-------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-h-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 33444455567788999999999988733221 1 12445565555654 499999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG 550 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~---n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~ 550 (557)
+...+...+.....+++.+.|+..|++|+...|+ ...+...+........... ..++.+++|...+.+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFPEV 574 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCC
Confidence 9988888888888899999999999999999884 3345555544444333222 2345667777665543
No 301
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.66 E-value=0.17 Score=43.17 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=82.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (557)
+..+..+-..|+-+-. +-.++-+..|.+|+..+|..... ...-.+.++.+.|.- ..+++.++|.+.|+.++
T Consensus 17 ~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~-------~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDKYG-------QNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp HHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGT-------TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccccc-------cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 3444433333443222 23367789999999988765311 112344445555544 67799999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (557)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~ 517 (557)
.++...+|.|...|+=-..+|+...|++.+.+|+.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 988888888888899889999999999999999999998753
No 302
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.1 Score=57.04 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
++.-.|.-.+..++|+.|+..+++|...-|.....|++++.||..+++|+.|+-.++.+-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344456677789999999999999999999999999999999999999999998888763
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=94.96 E-value=0.26 Score=47.56 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH----HHHHHHHHHH--
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----KQAEKLCTKV-- 474 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----~~A~~~~~~a-- 474 (557)
...+.|-.++..|+|.+|+..|+..+..++.....+.++.++++++...|..-+-.+-+.+.+= +...+.++-+
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3456899999999999999999999999987766667777777777666654444433333211 1112222222
Q ss_pred ---HccCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689 475 ---LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDNR 516 (557)
Q Consensus 475 ---l~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~p~n~ 516 (557)
..+.|.+.---.|.| ....+.++|.-|....++.|++.|..+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 233444433333444 446778999999999999999999754
No 304
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.87 E-value=0.25 Score=49.74 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=79.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC---CC
Q 008689 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD---SR 480 (557)
Q Consensus 404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~---p~ 480 (557)
..|..|+..|+|.+|+..+.+.++.+..... ..+.+.+|......|..++++.++...+.+|.... +.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 6789999999999999999999998875332 25677778889999999999999999999986542 12
Q ss_pred C----hHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 008689 481 N----VKALYRRAQAYI-QMADLDLAEFDIKKALE 510 (557)
Q Consensus 481 ~----~ka~~~~g~a~~-~lg~~~~A~~~~~~al~ 510 (557)
+ .+...--|..|+ ..++|..|-.+|-.+++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 2 233344588899 89999999999998874
No 305
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.87 E-value=0.88 Score=43.88 Aligned_cols=114 Identities=16% Similarity=0.285 Sum_probs=79.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCH-----HHHHHHHHHH
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDY-----KQAEKLCTKV 474 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~-----~~A~~~~~~a 474 (557)
..+.|-.++..|+|.+|+..|+..+..++.....+.++.++++++...|..-+-.+-+.+ ++. +...+.++-+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 457899999999999999999999999987777777788888887766665544433333 221 2333333333
Q ss_pred -----HccCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 475 -----l~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
..+.|.|.---.|.| ....+.++|.-|-...++.|++.|..
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 234454433333444 34677899999999999999998864
No 306
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.86 E-value=0.22 Score=49.54 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=53.3
Q ss_pred HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (557)
++..+|.++.+|..+|.++...|++++|+..+++|+.++|+ ......+..+.....+.++... .|.+.|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~Al 337 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAF 337 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 45678999999999999999999999999999999999975 5556677777666655555443 444444
No 307
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.25 Score=50.60 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--- 477 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--- 477 (557)
.+...|..+++.|++..|++.|.++...+.... .++.++.++..+++..++|..|..+++++..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999988765432 14566888889999999999999999998553
Q ss_pred CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 478 DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 478 ~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
.++. .+.....|.+++..++|.+|-..|..++.-.
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 2222 2344456888889999999999998877543
No 308
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.39 E-value=0.28 Score=46.21 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
...++.++.++|+..+...++-+|.|.+.-..+.+.++-.|+|+.|.+-++.+.+++|+.......++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999987655555444
No 309
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.86 E-value=1 Score=47.02 Aligned_cols=119 Identities=13% Similarity=0.000 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh---------HHHHHH----------------HHHHHHHHhhHH
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQA----------------KALKVACNLNNA 455 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~nla 455 (557)
-+...+..+.+.|+.+.|...|.+|+.. |.+....- +....+ ......++.+.+
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 3555667777889999999999999998 65432100 000000 011224566666
Q ss_pred HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLE 521 (557)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p~n~~~~~~ 521 (557)
....+.+..+.|...+.+| ...+.....|...|..-..++ +.+.|+..|+.+++..|+++.....
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6667788999999999999 433334566666666666566 5999999999999999988755433
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.80 E-value=0.42 Score=41.39 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=54.2
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHc--c---------------CCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLD--L---------------DSRNVKALY-RRAQAYIQMADLDLAEFDIKKALEID 512 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~--~---------------~p~~~ka~~-~~g~a~~~lg~~~~A~~~~~~al~l~ 512 (557)
.+--+.||.++++|..|+......|. . ||.+-..++ -+|..+..+|+-+||+..|......+
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 33578999999999999999999993 2 233333333 57999999999999999999999888
Q ss_pred CCCHHHH
Q 008689 513 PDNRDVK 519 (557)
Q Consensus 513 p~n~~~~ 519 (557)
|=-..+.
T Consensus 145 ~lf~~vE 151 (242)
T 3kae_A 145 FLFSPVE 151 (242)
T ss_dssp CCHHHHH
T ss_pred cccchHH
Confidence 7655444
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.41 E-value=2.1 Score=42.96 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=91.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-------------------hcCCCChH---------HHHH---HHHH
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE-------------------YDTSFGDE---------EKKQ---AKAL 446 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~-------------------~~~~~~~~---------~~~~---~~~~ 446 (557)
.=....+.|..|.+.|++++-.........++. ..+...+. +|.. ..-+
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999888777765443322 11111111 1111 1123
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEID---PDNRD 517 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~---p~n~~ 517 (557)
+..+-..||..|+..++|.+|+..+++.+..-.. -...+....+.|..++++.+|.+.|.+|.... +.++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 5556668999999999999999999998763211 25567788999999999999999999998663 35566
Q ss_pred HHHHHHHHHHHHHH
Q 008689 518 VKLEYKTLKEKMKE 531 (557)
Q Consensus 518 ~~~~l~~l~~~~~~ 531 (557)
+...+..+.-.+..
T Consensus 178 i~a~i~~~~Gi~~l 191 (394)
T 3txn_A 178 VQGALDLQSGILHA 191 (394)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 66666666555544
No 312
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.73 E-value=0.82 Score=47.53 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=72.4
Q ss_pred HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (557)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l 525 (557)
....|+.+||....-...+..|..+|.+|+.+.|++..+|..+|..+...++.-+|+-+|-+++....-.+.+...+..+
T Consensus 150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 34557778888888888999999999999999999999999999999999999999999999998877777777777766
Q ss_pred HHH
Q 008689 526 KEK 528 (557)
Q Consensus 526 ~~~ 528 (557)
-.+
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 313
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=92.53 E-value=0.26 Score=37.56 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=35.1
Q ss_pred ChHH-HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 391 NTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 391 ~~~e-~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
+..+ .++.|..+..+|...-+.|+|++|+.+|.+|++++-
T Consensus 2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4445 677899999999999999999999999999999864
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=91.54 E-value=0.58 Score=38.21 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=37.5
Q ss_pred cCCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 388 ~~~~~~-e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
..|+.. +.++.|..+..+|...-+.++|++|+.+|..|++++-.
T Consensus 6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 345555 67788999999999999999999999999999998654
No 315
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.64 E-value=1.4 Score=45.86 Aligned_cols=127 Identities=8% Similarity=-0.064 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCC
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS 479 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p 479 (557)
.+...+....+.++.+.|...|.+| . .+. ... .+|...|..-...+ +++.|...++.+++.-|
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~-----------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGP-----------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCH-----------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CCh-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 3445555555677899999999999 3 221 111 13444565555566 59999999999999889
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548 (557)
Q Consensus 480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (557)
+.+..+...+.-...+|+.+.|+..|+++ +....+...+.......... +.-++++.+++..+.
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM-ELFRELVDQKMDAIK 415 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhc
Confidence 88887777777788899999999999998 34555666555554444322 233356777776665
No 316
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.00 E-value=0.49 Score=36.02 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
...++.|..+..+|..+-+.|+|++|+.+|.+|++++.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999864
No 317
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.64 E-value=4.9 Score=41.14 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=76.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc-
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD- 476 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~- 476 (557)
++.-....+..++..|+|.+|.........-.- .... ...++.+++-....|+..++|..|...++++..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~--~~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETY--GSME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SSSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--hccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344456788999999999999999888664322 1221 234555677788899999999999999999742
Q ss_pred --cCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 477 --LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 477 --~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
-.+.+ .+.+.-.|..|.+.++|.+|-.+|..++.-
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 12222 334456788899999999999999888753
No 318
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=88.45 E-value=1.2 Score=34.00 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=34.9
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
|+....++.|..+..+|...-..|+|++|+.+|..|++++-.
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333445678888999999999999999999999999997653
No 319
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.41 E-value=0.51 Score=51.58 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
.-+..++..+..+++|+.|+.+-++|+...|..- .++..||.||.++++|+.|+-..+-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF---------------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF---------------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh---------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3566788889999999999999999999988644 23889999999999999999988877
No 320
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=88.32 E-value=2 Score=33.32 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.9
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
.++.|..+..+|..+-+.++|++|+.+|..|++++-.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999998754
No 321
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=86.48 E-value=3 Score=31.81 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
..|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999998653
No 322
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.53 E-value=5.2 Score=35.10 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHH
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVK 427 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~ 427 (557)
..++..|...+.+|+++-|.++|.++-+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4577788888888888888888877554
No 323
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=85.52 E-value=5.3 Score=41.55 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR 516 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~p~n~ 516 (557)
.|+.+-.+|.+.|++++|+..+++..+.. ..+...|..+=.+|.+.|++++|.+.|+...+. .|+..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 47778888889999999999998876642 236677888888899999999999999887764 55543
No 324
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=85.41 E-value=4.9 Score=41.79 Aligned_cols=101 Identities=5% Similarity=-0.046 Sum_probs=77.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-CC
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-SR 480 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~ 480 (557)
+...-..+.+.|++++|...|.+..+.- ... ....|+.+-.+|.+.|++++|.+.+++..+.. ..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~P-----------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFG---IQP-----------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-----------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 3445567888999999999998866531 111 12347777888999999999999999987653 23
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCH
Q 008689 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR 516 (557)
Q Consensus 481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~p~n~ 516 (557)
+...|.-+-.+|.+.|++++|.+.|++..+. .|+..
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 5677888999999999999999999998764 56543
No 325
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.15 E-value=3.5 Score=38.69 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (557)
Q Consensus 406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (557)
...+++.++.+.|+......++-.|.+... ...+...+.-.|+|+.|...++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~---------------R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 356889999999999999999987765522 223445555679999999999999999998744
No 326
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.63 E-value=7.4 Score=31.26 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (557)
.....|-.+.++|...-..|+-+.|+.+|++++..+... +....+.++....+..+...||..+.-+++..+.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788888888888999999999999999887542 1244678999999999999999999888876655
Q ss_pred H
Q 008689 467 A 467 (557)
Q Consensus 467 A 467 (557)
.
T Consensus 97 ~ 97 (116)
T 2dl1_A 97 G 97 (116)
T ss_dssp H
T ss_pred c
Confidence 3
No 327
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.50 E-value=4 Score=42.35 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=68.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (557)
Q Consensus 399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (557)
...+...|...--+..+..|...|.+|+.+.|..... |+.||..+.-.+++-.|+-+|.++|...
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~---------------~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP---------------YNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch---------------HHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 3456778888888889999999999999999987754 8899999999999999999999999887
Q ss_pred CCChHHHHHHHHHHHh
Q 008689 479 SRNVKALYRRAQAYIQ 494 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~ 494 (557)
.....|.-++...+.+
T Consensus 217 ~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 217 FPFPAASTNLQKALSK 232 (497)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHH
Confidence 7777777777776654
No 328
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.25 E-value=2.3 Score=49.37 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh--HHHHHHH------HHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAK------ALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~--~~~~~~~------~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
.-.|..++..|++++|..+|.+|..-+........ ....... .....-|+.++..+-+.+.++.+++.+..|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56789999999999999999998654332221111 1111110 112344667778888899999999999999
Q ss_pred HccCCCCh---H--HHHHHHHHHHhcCCHHHHHHHHHH
Q 008689 475 LDLDSRNV---K--ALYRRAQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 475 l~~~p~~~---k--a~~~~g~a~~~lg~~~~A~~~~~~ 507 (557)
|+..+.+. + .|.+.-++++.+++|++|-..+..
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 98654332 2 578899999999999999777643
No 329
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.02 E-value=5.1 Score=43.90 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=17.0
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
+.++|..+++.++++.|+..|.++
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 556777777777777777777765
No 330
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.91 E-value=2 Score=44.42 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC--C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--R---NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
..+++-+-..|+..+.|++|....+++.--.. . .+..+|..|+++...++|.+|.++|..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44565667899999999999999999953221 1 16678889999999999999999999999988765
No 331
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=81.42 E-value=8.1 Score=29.50 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=32.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
++.|..+-.++..+.+.|+|++||.+..+|+.++...
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568888899999999999999999999999987653
No 332
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.87 E-value=5.5 Score=33.29 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=43.6
Q ss_pred HhhHHHHHHh-hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 451 NLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 451 ~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|.++|.-++- +++-++--+.++..+..++-++..++.+|.||.++|+..+|.+.+++|-+-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5566665543 344444444444445666778999999999999999999999999998764
No 333
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.41 E-value=18 Score=36.88 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----cCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD----LDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALE---IDPDNRD 517 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~---l~p~n~~ 517 (557)
+..+...||..|...|+|.+|......+.. .++. -...+....+.|+..++|..|...++++.. -.+.++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 556677899999999999999999998753 1211 156778889999999999999999999752 3556666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008689 518 VKLEYKTLKEKMKEYNK 534 (557)
Q Consensus 518 ~~~~l~~l~~~~~~~~~ 534 (557)
.+..+..+..++...+.
T Consensus 216 lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKR 232 (445)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666655554443
No 334
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=78.19 E-value=3.7 Score=42.02 Aligned_cols=103 Identities=6% Similarity=0.006 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC--------C--CC
Q 008689 413 GKYARASKRYEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--------S--RN 481 (557)
Q Consensus 413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--------p--~~ 481 (557)
...+.|.+...++...+-.+.....++. ...+....-+-+++..+|+++++...|....+.+-... | ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 4567777888888877665543211110 01223333445677899999999988877776542221 1 12
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDN 515 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~p~n 515 (557)
+..+|-.|+.++..++|.+|.++|..|+.. .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 668889999999999999999999999998 7765
No 335
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.41 E-value=4.9 Score=35.25 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=40.8
Q ss_pred HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
+++|+++.|.+.|+.. ++...|-++|.+.+..|+++-|+.+|.++-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 5689999999998876 5678899999999999999999999988643
No 336
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.03 E-value=16 Score=36.44 Aligned_cols=77 Identities=13% Similarity=-0.019 Sum_probs=57.7
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCC----------CC------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDS----------RN------------VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p----------~~------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.|......++...|+..+.+||.+-. .+ ..++..++.++..+|++.+|+..+.+++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33344456788999999999987631 11 235557789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 008689 512 DPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 512 ~p~n~~~~~~l~~l~~~~~ 530 (557)
+|-+..+...+-++..+..
T Consensus 201 ~P~~E~~~~~lm~al~~~G 219 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSD 219 (388)
T ss_dssp STTCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 9999877777665544433
No 337
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.58 E-value=3.3 Score=42.19 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=60.5
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHccCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLEYKT 524 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--p~n~~~~~~l~~ 524 (557)
++..+|..|++.|+++.|++.+.++..... .....++..-+++...++|..|...+++|..+- ..++..+..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 466899999999999999999999877532 337788999999999999999999999998762 334445544444
Q ss_pred H
Q 008689 525 L 525 (557)
Q Consensus 525 l 525 (557)
+
T Consensus 213 ~ 213 (429)
T 4b4t_R 213 Y 213 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 338
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.25 E-value=6.6 Score=43.02 Aligned_cols=48 Identities=19% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH-------------HHHHHhcCCHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR-------------AQAYIQMADLDLAEFDIKK 507 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~-------------g~a~~~lg~~~~A~~~~~~ 507 (557)
..||.++++|..+...+.. ..+.+.+-++ ..+|+.+|++++|++.|.+
T Consensus 701 ~~~y~~~~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 701 IEAFTNAHDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHccChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577788888776666553 1222222222 2355666777777766654
No 339
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.94 E-value=7.9 Score=31.08 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=45.7
Q ss_pred hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN----RDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n----~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
..|++|..+.+++|.+|.. +.-..++.-|.+.+..|.+++.+..+- ...+..-++++.+|++....-+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~ 88 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVR 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988762 444455555667778888888887642 2455566666666665554433
Q ss_pred HH
Q 008689 538 KF 539 (557)
Q Consensus 538 ~~ 539 (557)
..
T Consensus 89 ~R 90 (116)
T 2dl1_A 89 TR 90 (116)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 340
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.44 E-value=5.5 Score=29.21 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+++-..-......|..+...|++++|+.+|-+|+.+++.
T Consensus 11 e~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 11 EAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344455566778999999999999999999999998764
No 341
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.57 E-value=80 Score=30.57 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=61.1
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHH-HHHHHHHhhhcCCCChHHHHHHHHHHHHHH------------hhHHHHHH
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKR-YEKAVKYIEYDTSFGDEEKKQAKALKVACN------------LNNAACKL 459 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~-y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~------------~nla~~~~ 459 (557)
+|..+.-+.++-..+.|.++++|++|++. |.-|+.++...... -..++-.+.+.+| .++..++.
T Consensus 29 ~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~---sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 29 EEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGG---SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34466667788889999999999999986 44445444321100 0000001111111 11222222
Q ss_pred hhhC--------HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008689 460 KLKD--------YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505 (557)
Q Consensus 460 k~~~--------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~ 505 (557)
.... .++|+.+..+.=...-.++..+...|..|.+-++|.+|...|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 2221 234555554422223346778888899999999999998887
No 342
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=68.63 E-value=10 Score=29.31 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=34.8
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+.+++-..-......|..++.+|+++.|+.+|-+|+.+++.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45556566777889999999999999999999999998764
No 343
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=68.12 E-value=26 Score=35.64 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 486 YRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 486 ~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|..|--.+..|..++|..+-.+|-++
T Consensus 491 y~~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 491 YVNAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 33334445556666666665555544
No 344
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=67.96 E-value=14 Score=27.08 Aligned_cols=38 Identities=5% Similarity=0.096 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (557)
Q Consensus 487 ~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~ 524 (557)
.+|..+...|++++|..+|-+|+++.|+-.+....+++
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 57888888888999999999999998887665555443
No 345
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=66.48 E-value=54 Score=37.08 Aligned_cols=101 Identities=6% Similarity=-0.120 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-
Q 008689 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (557)
Q Consensus 400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~- 478 (557)
..+...=+.|.+.|+.++|...|.+..+........ .+..|+-+-..|.+.|++++|++.+++..+..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-----------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~ 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-----------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-----------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 345666678999999999999997755432211111 13348888889999999999999999986642
Q ss_pred CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 008689 479 SRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEI 511 (557)
Q Consensus 479 p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l 511 (557)
.-|.-.|.-+=.++.+.|+ .++|.+.|+...+-
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2356677777778999998 57888999888764
No 346
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.31 E-value=41 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
-.+-|+|.+++.-|+|++||++.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345577777777777777776665554
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.97 E-value=66 Score=27.89 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=43.1
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
-++...+-.|+|..|+-+.. .-+.+-+.|-.+.||.++.+|..|+..+++.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667899998877654 23568899999999999999999999999999
No 348
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=63.57 E-value=28 Score=29.62 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (557)
Q Consensus 410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g 489 (557)
...++.++|...|+.|+++ ...+ ..++...|.--.++++...|++...+|+.+.|.. +-++..|
T Consensus 71 ~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a 134 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIA 134 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHH
Confidence 3447899999999999986 2222 5567788899999999999999999999998764 5566777
Q ss_pred HHHHhcCC
Q 008689 490 QAYIQMAD 497 (557)
Q Consensus 490 ~a~~~lg~ 497 (557)
...++.|.
T Consensus 135 ~~nl~~~~ 142 (161)
T 4h7y_A 135 LRNLNLQK 142 (161)
T ss_dssp HHHHHTTC
T ss_pred HHhhhcCC
Confidence 76666664
No 349
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=61.84 E-value=13 Score=37.88 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=57.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--C---h---HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--G---D---EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (557)
Q Consensus 402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~--~---~---~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (557)
+...++.+.+.++|.+|.-++.....++..+... . . -........+..+|...+..+.+-+.|+.|+..|+.
T Consensus 38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~ 117 (436)
T 2yin_A 38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE 117 (436)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4556888999999999999986666554332211 0 0 000111223445566666666677789999999999
Q ss_pred HHccCCCChHHHHHHHHHHHhcCC
Q 008689 474 VLDLDSRNVKALYRRAQAYIQMAD 497 (557)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~lg~ 497 (557)
++..-..+..-|-.++.+|..+.+
T Consensus 118 L~~~yE~~~~Dy~~Ls~~~~~~a~ 141 (436)
T 2yin_A 118 LAEQYEMEIFDYELLSQNLIQQAK 141 (436)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875433333335566666666543
No 350
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=60.27 E-value=54 Score=24.90 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHhhhHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcC----CCChHHHHHHHHHHHHHHhhHHHHHHhhh
Q 008689 395 KIEAAGKKKEQGNTLFKA---GKYARASKRYEKAVKYIEYDT----SFGDEEKKQAKALKVACNLNNAACKLKLK 462 (557)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~---~~y~~A~~~y~~Al~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~k~~ 462 (557)
-.+.|-.+.++|-..-.. |+-++|+..|++.+..+.... .-..+.++..+.+..+-..||..+.-++.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL~ 86 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQ 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888777 888999999999988765321 12567888888888888888887765543
No 351
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.06 E-value=1.2e+02 Score=28.95 Aligned_cols=106 Identities=8% Similarity=-0.037 Sum_probs=57.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHH-HHHHHhhhcCCCChHHHHHHHHHHHHH------------HhhHHHHHHhh---
Q 008689 398 AAGKKKEQGNTLFKAGKYARASKRYE-KAVKYIEYDTSFGDEEKKQAKALKVAC------------NLNNAACKLKL--- 461 (557)
Q Consensus 398 ~a~~~k~~G~~~~~~~~y~~A~~~y~-~Al~~~~~~~~~~~~~~~~~~~~~~~~------------~~nla~~~~k~--- 461 (557)
.-+.++-..+.+.++++|++|+.... -|+.++...... -..++-.+.+.+ ..++..++...
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~---sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGG---SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 34667778888999999999998844 444444321100 000000000000 01112221111
Q ss_pred -----hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689 462 -----KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506 (557)
Q Consensus 462 -----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 506 (557)
.=...|+.+..+.=...-.++..+...|..|.+-+++.+|+.+|-
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 113344444444423233567888899999999999999999874
No 352
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.27 E-value=17 Score=38.79 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=47.3
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
++...++.++|..|..++.+.-.-.....++.|++|+++..+|+-++|...|.++..
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444456789999999999876554445689999999999999999999999998765
No 353
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.42 E-value=57 Score=24.58 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008689 488 RAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 488 ~g~a~~~lg~~~~A~~~~~~al 509 (557)
+|.-.-..|+|++|+..|..|+
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344444444444444444
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.75 E-value=29 Score=39.10 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh--HHHHH------HHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQ------AKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (557)
Q Consensus 403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~--~~~~~------~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (557)
.-+|..++..|++++|..+|.+|..-+........ ..... ........|+..+..+-+.+.|+.+++.++.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46899999999999999999998754322211111 11000 01122334556666666666677777777776
Q ss_pred Hcc-CCCChH----HHHHHHHHHHhc
Q 008689 475 LDL-DSRNVK----ALYRRAQAYIQM 495 (557)
Q Consensus 475 l~~-~p~~~k----a~~~~g~a~~~l 495 (557)
|.. .+++.. .|.|+-++++++
T Consensus 924 I~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 924 DASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCccchHHHHHHHHHHHhhC
Confidence 653 233322 444544444444
No 355
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.09 E-value=64 Score=23.85 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHH
Q 008689 485 LYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKEY 532 (557)
Q Consensus 485 ~~~~g~a~~~lg~~~~A~~~~~~al~l------~p~n~~~~~~l~~l~~~~~~~ 532 (557)
...+|+=|..+|+|+.|+.+|+.++.. .-+|+..+..-..+++.+.+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E 68 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVE 68 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHH
Confidence 345566666667777766666666642 112444455555555555443
No 356
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=52.51 E-value=73 Score=24.06 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~ 429 (557)
..+..+...|..+|+.++|.+|+..|+++...-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 668888999999999999999999999988653
No 357
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=52.09 E-value=36 Score=31.17 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++....-..+ ..+++.+.+|.+..|+. +++.++|+..+++|+.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578889999998764322111 25677788899888776 7889999988888653
No 358
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=51.99 E-value=28 Score=37.47 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
.+...+|+.++..|+|.-|.+.++.++..+|+|.+++..+..+...+.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666665555553
No 359
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=51.22 E-value=40 Score=31.36 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++. ..-..+ ..+++.+.+|.+..|+. +++.++|+..+++|+.
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPT-------HPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357888999999886 322221 25677888899988777 7899999998888754
No 360
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.14 E-value=60 Score=24.25 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCCCCH
Q 008689 501 AEFDIKKALEIDPDNR 516 (557)
Q Consensus 501 A~~~~~~al~l~p~n~ 516 (557)
|++.|..+++..|+..
T Consensus 45 aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 45 AIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHHHCCCHH
Confidence 3444555556666543
No 361
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=50.89 E-value=67 Score=23.92 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhCCCCH
Q 008689 500 LAEFDIKKALEIDPDNR 516 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~ 516 (557)
+|++.|.++++..|+..
T Consensus 36 ~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 36 KAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 34445555666666554
No 362
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=49.54 E-value=41 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++....-..+ ..+++.+.+|.+..|+. +++.++|+..+++|+.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pT-------hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3667888999988653222111 25677788888887776 6888888888887653
No 363
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.34 E-value=79 Score=24.11 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhCCCCH
Q 008689 500 LAEFDIKKALEIDPDNR 516 (557)
Q Consensus 500 ~A~~~~~~al~l~p~n~ 516 (557)
+|++.|..+++..|+..
T Consensus 40 ~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 34444555556666543
No 364
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=49.18 E-value=42 Score=30.92 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++....-..+ ..+++-+.+|.+..|+. +++.++|++.+++|+.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPT-------HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999988754322111 25677788899887776 7889998888887653
No 365
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=48.93 E-value=1.6e+02 Score=33.25 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=65.3
Q ss_pred HHhhHHHHHHhhhCHHHHHHHHHHHHcc----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 008689 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRDVKLEYK 523 (557)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~p~n~~~~~~l~ 523 (557)
.|+-+-.+|.+.|+.++|...+.+..++ -.-|+-.|.-+-..|++.|++++|++.|++..+. .|+-......+.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3677788999999999999999764332 2446788999999999999999999999998764 576543333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008689 524 TLKEKMKEYNKKEAKFYGNMFAK 546 (557)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~mf~~ 546 (557)
+..+..+..+.-.+++..|..+
T Consensus 209 -glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 -CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -HHHHHTCCHHHHHHHHHHHHHH
T ss_pred -HHHhCCCcHHHHHHHHHHHHHc
Confidence 3333322111222355566543
No 366
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=48.80 E-value=1.1e+02 Score=30.05 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
..|+|+.|..+...+++-+|+..|+.|.+.
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKL 282 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457778888888889999999888877654
No 367
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=48.75 E-value=3.7 Score=38.26 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (557)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~ 432 (557)
......|..+..+|..+-+.|+|++|+.+|..|++++-..
T Consensus 17 dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 17 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ----------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3455668888899999999999999999999999987543
No 368
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.47 E-value=22 Score=27.44 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (557)
Q Consensus 487 ~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l 522 (557)
.+|..+...|+++.|+.+|-+|+.+.|+-.++...+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 467888888888888888888888877755444444
No 369
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=48.35 E-value=43 Score=31.13 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHH
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVL 475 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al 475 (557)
-+.|...|+.|..+-...-..+ ..+++.+.+|.+..|+. +++.++|+..+++|+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3578889999998764322111 25678888899988777 689999999988865
No 370
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=47.69 E-value=1.3e+02 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHccCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSR--------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~--------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|+..+.+++.|+.+-|. ..-|+.-+|++|+.+++|++|++..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 67788888888775443 355788899999999999999999999885
No 371
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=46.52 E-value=38 Score=30.21 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (557)
.+.-++-+|..++-.++|.+|.+++..|+...|.......+
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~ 53 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKR 53 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHH
Confidence 45556678888888888888888888888887766544333
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.04 E-value=27 Score=39.37 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+..++..++++- ..+.+...|.++-.-|-+|++|+.+|++++|..+|++|-
T Consensus 817 ~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 817 VEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334455566654 344667778888888999999999999999999999876
No 373
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=43.42 E-value=58 Score=29.77 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++....-..+ ..+++.+.+|.+..|+. +++.++|++.+++|+.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPT-------NPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999988754322111 25677888899887775 6889999988888653
No 374
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.35 E-value=1.6e+02 Score=30.45 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=63.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+.+.-+.-.|..+.-+++|.+|..++..|++.+|.+.... ..+..++-.+-.|.+-+|+... +.+-
T Consensus 268 q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~--------gfr~~a~K~lI~V~LLlG~iP~------r~lf 333 (523)
T 4b4t_S 268 LEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL--------GFLQQSNKLHCCIQLLMGDIPE------LSFF 333 (523)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS--------HHHHHHHHHHHHHHHHHTCCCC------HHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh--------hHHHHHHHHHHhHHhhcCCCCC------hHHh
Confidence 3467778889999999999999999999999887655432 1222233334445555565432 1111
Q ss_pred cCCCC---hHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCC
Q 008689 477 LDSRN---VKALYRRAQAYIQMAD---LDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 477 ~~p~~---~ka~~~~g~a~~~lg~---~~~A~~~~~~al~l~p~n 515 (557)
..+.. ...|+.+++|+ +.|+ |+.+++.+...+.-+-..
T Consensus 334 ~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty 377 (523)
T 4b4t_S 334 HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTY 377 (523)
T ss_dssp TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChh
Confidence 12222 34577787776 4455 455555566666666443
No 375
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=42.78 E-value=1e+02 Score=22.91 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008689 493 IQMADLDLAEFDIKKAL 509 (557)
Q Consensus 493 ~~lg~~~~A~~~~~~al 509 (557)
-..|+|++|+..|..|+
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34444444444444444
No 376
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=42.34 E-value=1.3e+02 Score=24.05 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 008689 501 AEFDIKKALEIDPDNRDV 518 (557)
Q Consensus 501 A~~~~~~al~l~p~n~~~ 518 (557)
|++.|..+++..+.+...
T Consensus 44 Aie~l~~alk~e~~~~~~ 61 (117)
T 2cpt_A 44 AVQYFLHVVKYEAQGDKA 61 (117)
T ss_dssp HHHHHHHHHHTSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHH
Confidence 334455566666556543
No 377
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=41.87 E-value=43 Score=22.66 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=34.4
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
+..+.+..|+.+-..+...++-.+..-|++..++|++++.
T Consensus 12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 4567788888999999999999999999999999998864
No 378
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.35 E-value=32 Score=36.95 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=43.7
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL 498 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~ 498 (557)
....|...+..|+|..|.+.++.++..+|+|..|..-+|.+|.+||.-
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 456788888999999999999999999999999999999999999843
No 379
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=41.22 E-value=1.1e+02 Score=23.03 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL----EYKTLKEKM 529 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~----~l~~l~~~~ 529 (557)
+..+.-.|+-+.++++|.+|...|+++..+. +|..+.. -+..|++++
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHHHHHHHHHHHHHHHh
Confidence 4455666777888888999998888887664 4444433 235555544
No 380
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=39.60 E-value=69 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=33.6
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
.++.++.|..+.+.|..++++|++..|+.++.=|--++.
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLD 66 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLE 66 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999877665543
No 381
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=39.09 E-value=73 Score=24.09 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=32.8
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~ 429 (557)
..++.++.|..+.+.|..++++|++..|+.++.=|--++
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 69 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999887665544
No 382
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.88 E-value=54 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.5
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
..|+..+..+.+ ..|..+--.|+|+.|+.+|..++..+..
T Consensus 5 ~~~~~~~i~e~~----k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 5 MTMSLQMIVENV----KLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp CSSSSHHHHHHH----HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHH----HHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 345555554444 4555666679999999999999987654
No 383
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=38.71 E-value=2e+02 Score=29.46 Aligned_cols=48 Identities=6% Similarity=-0.042 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHccCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 464 YKQAEKLCTKVLDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~-----------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|+..+.+++.|+..-|. ..-|+--+|++|+..++|++|.+..++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777664442 2457888999999999999999999999863
No 384
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=38.44 E-value=55 Score=30.49 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
-+.|...|++|.++....-.. .....+++-+.+|.+..|+. +++.++|+..+++|+.
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~-----~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEK-----YPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----GGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788899988765322100 01125677788898888774 7889999988888765
No 385
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.21 E-value=1.5e+02 Score=25.20 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHH-hhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN-LNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
.-...|..+|..|+|-+|-+.+..+=...+ ..+ ++.. -++..+. ..-|..+++.+++..|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~---~~~-~er~---~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYG---RGN-TESK---FLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---SSS-HHHH---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcC---CCc-hHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346688899999999999888876543221 111 1222 2233334 4567778888999999999999976
No 386
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.83 E-value=29 Score=40.08 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
++...++.++++.|.. .+...|.++-.-|-+|++|+..|++++|..+|++|-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4444555666654433 445567787888999999999999999999998874
No 387
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=35.83 E-value=41 Score=30.52 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=41.8
Q ss_pred HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHc
Q 008689 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 411 ~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (557)
..|+-+.|...|+.|.++....-.. ..++++-+.+|.+..|+. +++.++|++.+++|+.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~p-------thPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDK-------IEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGG-------GGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCC-------CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566789999999999875421110 113456677888877664 7789999999999865
No 388
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=35.81 E-value=1.4e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689 498 LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (557)
Q Consensus 498 ~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~ 537 (557)
..++++.-.++++.+|+|+.+..+++.......-.+..+.
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQS 71 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQS 71 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556667899999887777776555555554443
No 389
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.36 E-value=1.9e+02 Score=24.60 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCC------hHHHHH-HHHHHHh--cCCHHHHHHHHHHHHH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYR-RAQAYIQ--MADLDLAEFDIKKALE 510 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~------~ka~~~-~g~a~~~--lg~~~~A~~~~~~al~ 510 (557)
..+..++..++|-+|=+.++.+-...+.. .+++.+ .|.++.+ .|+..-|...+.+|+.
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666799999999999987766544 556666 6555555 6999999999999987
No 390
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.37 E-value=94 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (557)
Q Consensus 483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n 515 (557)
..+|-+|+.++..++|.+|.++|..|+...|.+
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 445556666666666666666666666655543
No 391
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=31.79 E-value=1.6e+02 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689 498 LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (557)
Q Consensus 498 ~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~ 530 (557)
..+++..-.++|+-+|+|+....+++....+-.
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eys 58 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQLLAEYQSKLSEYT 58 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345555556667778998877666665544433
No 392
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=31.32 E-value=3.7e+02 Score=26.07 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 482 VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
..|+|+.|......+++-+|+..|+.|..
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 280 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALD 280 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence 34677777777778889888887777664
No 393
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=30.64 E-value=2.2e+02 Score=28.94 Aligned_cols=48 Identities=8% Similarity=-0.118 Sum_probs=37.4
Q ss_pred HH-HHHHHHHHHHcc-CC--------CChHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHh
Q 008689 464 YK-QAEKLCTKVLDL-DS--------RNVKALYRRAQAYIQMA---------DLDLAEFDIKKALEI 511 (557)
Q Consensus 464 ~~-~A~~~~~~al~~-~p--------~~~ka~~~~g~a~~~lg---------~~~~A~~~~~~al~l 511 (557)
|+ ..+.+++.|+.. -| +..-|+.-+|++|+..+ +|++|.+..++++..
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 66 677788888876 33 22557888899999888 899999999998863
No 394
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=29.30 E-value=86 Score=23.77 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=37.0
Q ss_pred hCHHHHHHHHHHHHccCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Q 008689 462 KDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRDVKLEYKTLKEKMKEYN 533 (557)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-n~~~~~~l~~l~~~~~~~~ 533 (557)
..|+.|..+.+++|..|..+ +..||+.| +..|.+++.+.-+ .-..+..-++++.++....
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkG------------i~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL 78 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKG------------IEELEKGIAVIVTGQGEQCERARRLQAKMMTNL 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHH------------HHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHH------------HHHHHhhcCCccCCCChhHHHHHHHHHHHHHHH
Confidence 45888999999999876542 23445444 4667777776433 2234555566666665544
Q ss_pred H
Q 008689 534 K 534 (557)
Q Consensus 534 ~ 534 (557)
.
T Consensus 79 ~ 79 (89)
T 3eab_A 79 V 79 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 395
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.62 E-value=12 Score=38.13 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (557)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~ 431 (557)
+.++.|..+..+|..+-+.|+|++|+.+|.+|++++..
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35567888889999999999999999999999998754
No 396
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=28.15 E-value=3.5e+02 Score=27.82 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHccCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 464 YKQAEKLCTKVLDLDSR-------------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~-------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|+..+.+++.|+..-|. ..-|+--+|++|+..++|++|.+.+++++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56677777777665451 2458888999999999999999999999863
No 397
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=27.68 E-value=1.1e+02 Score=31.07 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhcC--CCChHH----HHHHHHHHHHHHhhHHHHHHh------------------------h-----
Q 008689 417 RASKRYEKAVKYIEYDT--SFGDEE----KKQAKALKVACNLNNAACKLK------------------------L----- 461 (557)
Q Consensus 417 ~A~~~y~~Al~~~~~~~--~~~~~~----~~~~~~~~~~~~~nla~~~~k------------------------~----- 461 (557)
.++...+.+|+.++... ...+++ .-++.-+++-+|++|...|-. .
T Consensus 93 ~~I~~aN~~i~~~~~~~~~~~~~~~~~~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~ 172 (477)
T 3mcx_A 93 KVIRQTNNLIQKIESGSIQSSDTKELNRIKSEALVMRGLSLFNLTRLFGMPYTNDKGASLGVPIETSPSDPTHKPSRSTV 172 (477)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTTTCSBCCCCCCSSCCTTCCCCCCBH
T ss_pred HHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccCCceeeecccCcccCCCCCCH
Confidence 35555666666554322 112211 234555677777777776651 0
Q ss_pred -hCHHHHHHHHHHHHccCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 462 -KDYKQAEKLCTKVLDLDSR--------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 462 -~~~~~A~~~~~~al~~~p~--------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
.-|+..+.+++.|+.+-|. ..-|+.-+|++|+..++|++|.+..++++..
T Consensus 173 ~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 173 AQCYEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 0177888899998876543 2457888999999999999999999999864
No 398
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.59 E-value=4.1e+02 Score=30.89 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhh--------CHHHHHHHHHHHHc-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689 439 EKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (557)
Q Consensus 439 ~~~~~~~~~~~~~~nla~~~~k~~--------~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 509 (557)
+.++.+..++.+++..+.+..++. +...-.+.|.++++ .|+++.|++.-...-...+++|-.|++.+.+++
T Consensus 1232 ~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~ 1311 (1354)
T 3lxu_X 1232 NMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLI 1311 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666544444332 12233334444444 366777877655555557999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 008689 510 EIDPDNRDVKLEYKTLKE 527 (557)
Q Consensus 510 ~l~p~n~~~~~~l~~l~~ 527 (557)
+-.| .++...++..+..
T Consensus 1312 ~~k~-~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1312 EEKR-TRDHFVELAAING 1328 (1354)
T ss_dssp HHTC-CHHHHHHHHHHHH
T ss_pred hccc-cHHHHHHHHHHHH
Confidence 8776 4444444444433
No 399
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.19 E-value=1e+02 Score=31.29 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHccCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSR--------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~--------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|+..+.+++.|+.+-|. ..-|+.-+|++|+.+++|++|.+..++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 56778888888765443 255788899999999999999999999885
No 400
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=26.67 E-value=72 Score=35.24 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEEEEEecCCcEEEec----------------C----------CCCCcccEEEEcCccchhhHHHHHHhcc
Q 008689 285 RPNEGAVVKVKLIGKLQDGTVFVKK----------------G----------HSEEEQLFEFKTDEEQVIDGLDRAVITM 338 (557)
Q Consensus 285 ~p~~~~~v~v~~~~~l~~g~~~~~~----------------~----------~~~~~~~~~~~lg~~~vi~gle~~l~~M 338 (557)
....|+.|.|.|+..|...-...+. . .-+.+..++|-+|.+.+.+-++.++..|
T Consensus 560 ~i~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies~~e~~fe~g~g~~~~~le~vV~qm 639 (950)
T 3htx_A 560 SITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIESNEEIEFEVGTGSMNPHIESEVTQM 639 (950)
T ss_dssp CCCTTEEEEEEEEEEEEECC----------------------------CCCEEEEEEEEEEEEETTTCBCHHHHHHHTTC
T ss_pred ccCCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhcccccHHHHHHHhcCCccchhhheeeec
Confidence 4478999999999877421000000 0 0023566889999999999999999999
Q ss_pred CcCcEEEEEEc
Q 008689 339 KKNEVALLTIA 349 (557)
Q Consensus 339 ~~GE~~~v~i~ 349 (557)
..|+...|...
T Consensus 640 s~gqT~~F~~~ 650 (950)
T 3htx_A 640 TVGEYASFKMT 650 (950)
T ss_dssp CTTCEEEEEES
T ss_pred cccceeEEecc
Confidence 99999999854
No 401
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=26.43 E-value=96 Score=30.72 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689 484 ALYRRAQAYIQMADLDLAEFDIKKALE 510 (557)
Q Consensus 484 a~~~~g~a~~~lg~~~~A~~~~~~al~ 510 (557)
|+|+.|..+...+++-+|+..|+.|.+
T Consensus 259 A~y~~a~~~~e~~k~GeaIa~L~~A~~ 285 (392)
T 1zb1_A 259 SAYYHGLHLEEENRVGEAIAFLDFSMQ 285 (392)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 566677777777888888888887774
No 402
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.69 E-value=71 Score=32.34 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|+..+.-++.|+..++...... +.-+..++.-+|.+|+-+++|++|+.+|++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~g-------r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNG-------RMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTT-------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-------eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3444555566666665321110 011334566688899999999999999999985
No 403
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.40 E-value=1.2e+02 Score=31.15 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHccCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689 464 YKQAEKLCTKVLDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~-----------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 511 (557)
|+..+.+++.|+..-|. ..-|+--+|++|+.+++|++|++..++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66677778887765442 2457888999999999999999999999865
No 404
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=24.70 E-value=57 Score=32.86 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh------cCC--------CCh---HH--HHH---------HHHHHHHHHh
Q 008689 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEY------DTS--------FGD---EE--KKQ---------AKALKVACNL 452 (557)
Q Consensus 401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~------~~~--------~~~---~~--~~~---------~~~~~~~~~~ 452 (557)
-+...++.+.+.++|.+|..++..++.+.-. ... ... ++ ... -......++.
T Consensus 13 wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~ 92 (428)
T 2wm9_A 13 WLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLE 92 (428)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHH
Confidence 3456778889999999999998755542111 000 000 00 000 0111223444
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH
Q 008689 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL 498 (557)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~ 498 (557)
..+..+.+-+.|+.|+..|+.++..-..+ .-|-.++.+|..+.++
T Consensus 93 ~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a~~ 137 (428)
T 2wm9_A 93 QCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLHRA 137 (428)
T ss_dssp HHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 44555666677999999999887543222 3456677777766544
No 405
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.52 E-value=1.3e+02 Score=30.68 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
|+..+.-++.|+..++....... .-+.-+..++.-+|.+|+-+++|++|+.+|++++.
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~----~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDA----KHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSS----TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCccc----CCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455566666666653211000 00011334566688889999999999999999974
No 406
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.04 E-value=3.7e+02 Score=23.70 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh---hCHHHHHHHHHHHHcc--CCCChHHHHHHHHHHHh
Q 008689 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQ 494 (557)
Q Consensus 420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~ 494 (557)
..+.+|++.+..+..+.++. - |+.+-.-|..+ ++...+...+...... .-..+..|-..|..+..
T Consensus 58 ~lLErc~~~F~~~~rYkND~------R----YLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~ 127 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDP------R----FLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN 127 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCH------H----HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCH------H----HHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 46777777666554432211 1 33333333333 3366777777776554 34556666678899999
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 008689 495 MADLDLAEFDIKKALEIDP 513 (557)
Q Consensus 495 lg~~~~A~~~~~~al~l~p 513 (557)
.|+|.+|.+.|+.+++-.-
T Consensus 128 ~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 128 AQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998753
No 407
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.97 E-value=80 Score=32.04 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=24.6
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+..++.-+|.+|+-+++|++|+..|++++.
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344566678888999999999999999975
No 408
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=23.83 E-value=4.7e+02 Score=26.53 Aligned_cols=94 Identities=11% Similarity=-0.069 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhcCC-CChH-HHHHHHHHHHHHHhhHHHHHHh------------------hhCHHHHHHHHHHHHc
Q 008689 417 RASKRYEKAVKYIEYDTS-FGDE-EKKQAKALKVACNLNNAACKLK------------------LKDYKQAEKLCTKVLD 476 (557)
Q Consensus 417 ~A~~~y~~Al~~~~~~~~-~~~~-~~~~~~~~~~~~~~nla~~~~k------------------~~~~~~A~~~~~~al~ 476 (557)
..+...+..|+.++.... ...+ ...+++-+++-+|++|...|-. ..-|+..+.+++.|+.
T Consensus 94 ~~I~~aN~~i~~~~~~~~~~~~~~~~aEa~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~ 173 (499)
T 3jys_A 94 YIVALVNEFLKNIPNAPESIDKESYIAQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKP 173 (499)
T ss_dssp HHHHHHHHHHHHGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 345555556655543321 1111 2345555666666666666532 1126778888888877
Q ss_pred cCCC---------ChHHHHHHHHHHH------hcCCHHHHHHHHHHHHH
Q 008689 477 LDSR---------NVKALYRRAQAYI------QMADLDLAEFDIKKALE 510 (557)
Q Consensus 477 ~~p~---------~~ka~~~~g~a~~------~lg~~~~A~~~~~~al~ 510 (557)
.-|. ..-|+.-+|++|+ ..++|++|++.+++++.
T Consensus 174 ~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 174 NLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp GSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 5443 2346777788777 57899999999999984
No 409
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=23.63 E-value=2.5e+02 Score=23.34 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=33.8
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~ 430 (557)
+..--+..|..+...|..+...|+.+.|--.|-+.+.++.
T Consensus 34 pl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~ 73 (144)
T 2a9u_A 34 STKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYN 73 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4444568899999999999999999999999998877764
No 410
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.92 E-value=1.6e+02 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=34.9
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008689 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (557)
Q Consensus 390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~ 429 (557)
.+...-+..|..+...|..+...|+++.|.-.|-+++.++
T Consensus 31 i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 31 IPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3556677889999999999999999999999999987765
No 411
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=22.63 E-value=33 Score=20.42 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q 008689 1 MDEDFDIPA 9 (557)
Q Consensus 1 ~~~~~~~~~ 9 (557)
|||||-+..
T Consensus 20 MddDFqL~~ 28 (34)
T 1lqb_D 20 MDDDFQLRS 28 (34)
T ss_pred cCccccccc
Confidence 789998655
No 412
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=22.46 E-value=5.8e+02 Score=25.80 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHccCCC----------ChHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSR----------NVKALYRRAQAYIQM------ADLDLAEFDIKKALE 510 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~----------~~ka~~~~g~a~~~l------g~~~~A~~~~~~al~ 510 (557)
|+..+.+++.|+..-|. ..-|+--+|++|+.. ++|++|.+.+++++.
T Consensus 169 y~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 169 YTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 67788888888775442 245777888888865 899999999999985
No 413
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=22.20 E-value=3e+02 Score=25.51 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=62.8
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhhHHHH----HHhhh-
Q 008689 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAAC----KLKLK- 462 (557)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~----~~k~~- 462 (557)
+.+..+...--+.+.....+..|+.+..+...+-.+.-+...- .....-......+...+++.++.. .++.+
T Consensus 14 ~~~d~~sql~gly~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ed 93 (346)
T 3qtm_A 14 TEEDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKE 93 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCT
T ss_pred eccchHHHHHhHHHHHHHHhhccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCch
Confidence 4555566666677888889999999998888776665433211 100000011222222222111222 22322
Q ss_pred ------CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc
Q 008689 463 ------DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (557)
Q Consensus 463 ------~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l 495 (557)
=|+.|++-|+-.++..|++....+-+++++++.
T Consensus 94 e~~V~eFFDaALERielGLe~~p~s~~L~la~SKILlqr 132 (346)
T 3qtm_A 94 TNTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEK 132 (346)
T ss_dssp TCCHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHH
Confidence 278899999999999999988888888877754
No 414
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.53 E-value=2.7e+02 Score=27.67 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=40.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008689 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~p~n~~~~~~l~~l~~~~ 529 (557)
+...++.-|.-+|-.|++.++|.+|+..+-.|-.. .-++.++.+++-.+...+
T Consensus 313 Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 313 YRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred hccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence 34567778888899999999999999999887653 345678888876664444
No 415
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.28 E-value=1.8e+02 Score=29.37 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=24.5
Q ss_pred HHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 448 VACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
..++.-+|.+|+-+++|++|+.++++++.
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566788899999999999999999974
No 416
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.19 E-value=2.9e+02 Score=26.91 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008689 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKM 529 (557)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~p~n~~~~~~l~~l~~~~ 529 (557)
|.+|+...++- .+..++.-|.-+|-.|++.+++.+|++.+-.|-.. .-++.++.+++-.+...+
T Consensus 280 ~~~AI~sa~~y--Y~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 280 FKEAITVAKRE--YSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp HHHHHHHHHHH--STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHH--hccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 44444444433 34567788888899999999999999999887653 345667777776664444
No 417
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.49 E-value=20 Score=38.53 Aligned_cols=51 Identities=22% Similarity=0.155 Sum_probs=45.0
Q ss_pred HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH
Q 008689 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501 (557)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A 501 (557)
...+|...+..|+|..|.+.++.++..+|+|..|..-+|.+|.+||.-.+.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 446778888999999999999999999999999999999999999965443
No 418
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=20.70 E-value=2.5e+02 Score=31.04 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEEEEEEc-CCC-------------------------------EEeecCCCCCceEEEccCCcccHHHHHH
Q 008689 52 TPENGDEVEVHYTGTLL-DGT-------------------------------QFDSSRDRSTPFKFTLGQGNVIKGWDIG 99 (557)
Q Consensus 52 ~~~~gd~V~v~y~~~~~-dg~-------------------------------~~~~t~~~~~p~~~~lg~~~~~~gl~~~ 99 (557)
.+..|+.|.|.|++.+. +|+ .+++. .-+.|.+|.+.+.+-++-.
T Consensus 560 ~i~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies~----~e~~fe~g~g~~~~~le~v 635 (950)
T 3htx_A 560 SITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIESN----EEIEFEVGTGSMNPHIESE 635 (950)
T ss_dssp CCCTTEEEEEEEEEEEEECC----------------------------CCCEEEEEE----EEEEEEETTTCBCHHHHHH
T ss_pred ccCCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhccccc----HHHHHHHhcCCccchhhhe
Confidence 45789999999999774 331 22222 4588999999999999999
Q ss_pred HcccccccEEEEEe
Q 008689 100 IKTMKKGENAVFTI 113 (557)
Q Consensus 100 l~gm~~Ge~~~v~i 113 (557)
+..|..|+...|..
T Consensus 636 V~qms~gqT~~F~~ 649 (950)
T 3htx_A 636 VTQMTVGEYASFKM 649 (950)
T ss_dssp HTTCCTTCEEEEEE
T ss_pred eeeccccceeEEec
Confidence 99999999998873
No 419
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.63 E-value=84 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (557)
+..++.-+|.+|+-+++|++|+.+|++++.
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344566788899999999999999999986
No 420
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.09 E-value=1.8e+02 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (557)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (557)
+..++.-+|.+|+-+++|++|+..|++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3445666788888899999999999999853
Done!