BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008692
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/545 (44%), Positives = 334/545 (61%), Gaps = 29/545 (5%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP LMW+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLMWV 71
Query: 73 EAXXXXXXXXXXXXX-XXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVWMDSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +GMNL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGI 311
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG+ L GD+A+SLGTSDT+F
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLE-EGDIAVSLGTSDTLFLW 310
Query: 312 TDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPL 371
+P P LEGH+F NPVD++ YM +L +KN SL RE +RN +SW F+K LQ T
Sbjct: 311 LQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMG 370
Query: 372 NGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQF 431
NGG +GFY+ EI P + +G HR+ EN +V F EVRAL+EGQF
Sbjct: 371 NGGNLGFYFDVMEITPEI-IGRHRFNTENH-----------KVAAFPGDVEVRALIEGQF 418
Query: 432 LSMRGHAERFGLPSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 490
++ R HAE G + +I+ATGGAS N+ IL LA ++ +Y + +SA +G+A R
Sbjct: 419 MAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYR 478
Query: 491 AAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVT--AGDQQLVSKYAVMMKKRLEIEN 548
A HG G+ VP S ++ K + + +LA T G Q+ Y ++ + ++E
Sbjct: 479 AFHGL---AGGTDVPFS-----EVVKLAPNPRLAATPSPGASQV---YEALLPQYAKLEQ 527
Query: 549 RLVEK 553
R++ +
Sbjct: 528 RILSQ 532
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/545 (44%), Positives = 328/545 (60%), Gaps = 29/545 (5%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP L W+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLXWV 71
Query: 73 EAXXXXXXXXXXXXXX-XXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKXKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVW DSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWXDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +G NL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGXNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGI 311
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG L GD+A+SLGTSDT+F
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGXRLE-EGDIAVSLGTSDTLFLW 310
Query: 312 TDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPL 371
+P P LEGH+F NPVD++ Y +L +KN SL RE +RN +SW F+K LQ T
Sbjct: 311 LQEPXPALEGHIFCNPVDSQHYXALLCFKNGSLXREKIRNESVSRSWSDFSKALQSTEXG 370
Query: 372 NGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQF 431
NGG +GFY+ EI P + +G HR+ EN +V F EVRAL+EGQF
Sbjct: 371 NGGNLGFYFDVXEITPEI-IGRHRFNTENH-----------KVAAFPGDVEVRALIEGQF 418
Query: 432 LSMRGHAERFGLPSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 490
+ R HAE G + +I+ATGGAS N+ IL LA ++ +Y + +SA +G+A R
Sbjct: 419 XAKRIHAEGLGYRVXSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYR 478
Query: 491 AAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVT--AGDQQLVSKYAVMMKKRLEIEN 548
A HG G+ VP S + K + + +LA T G Q+ Y ++ + ++E
Sbjct: 479 AFHGL---AGGTDVPFSEVV-----KLAPNPRLAATPSPGASQV---YEALLPQYAKLEQ 527
Query: 549 RLVEK 553
R++ +
Sbjct: 528 RILSQ 532
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 121/526 (23%), Positives = 190/526 (36%), Gaps = 103/526 (19%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTL 69
+L G D+STQS K V D+ E ++F G + P NG V P+
Sbjct: 5 TLVAGVDTSTQSCKVRVTDAETG----ELVRF-----------GQAKHP--NGTSVDPSY 47
Query: 70 MWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGD 129
W V+A++ GQQHG V ++D G+
Sbjct: 48 WW----SAFQEAAEQAGGLDDVSALAVGGQQHGXV------------------ILDNQGN 85
Query: 130 AFSTKESPVWMDSSTTAQCREIEKAVG---------------GALELSKLTGSRGYERFT 174
+++ +W D+S+ Q + + +G G K GS +T
Sbjct: 86 VI--RDAXLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYT 143
Query: 175 GPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACI-------------DETDAAGM 221
++ + + +P I + ++ S I Y + D +DA+G
Sbjct: 144 LTKVAWVAENEPENVKKIAAICLPHDWL-SWRIAGYGPVAEGEDAHLEALFTDRSDASGT 202
Query: 222 NLMDIRQRVWSKIVLEATAPSLEEKLG-KLAPAHAVAGCI---------APYFVERFHFN 271
D + + ++ A LE G K A +HA A + AP +
Sbjct: 203 IYYDAASNEYRRDLI---AXVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAG 259
Query: 272 KN----CLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNP 327
KN CL+ GDN + GL + GD++ISLGTS I+++P L G V
Sbjct: 260 KNVEGGCLLAPGGGDNAXASLGLGXAV-GDVSISLGTSGVAAAISENPTYDLTGAVSGFA 318
Query: 328 VDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILP 387
T Y+ + N S + R ++ P NG + Y+ + E P
Sbjct: 319 DCTGHYLPLACTINGSRILDAGRAALGVDYDELAKLAFASKPGANGITLVPYF-DGERTP 377
Query: 388 PLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERF-GLPSP 446
P F G TL + RA VEG S R E L +
Sbjct: 378 NRP-----NATATFSGXTLANTTRENL--------ARAFVEGLLCSQRDCLELIRSLGAS 424
Query: 447 PRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 492
RI+ GG + ++ I + SI G D+ + ++GAA +AA
Sbjct: 425 ITRILLIGGGAKSEAIRTLAPSILGXDVTRPATDEYVAIGAARQAA 470
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 86/435 (19%), Positives = 169/435 (38%), Gaps = 70/435 (16%)
Query: 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLM 70
+++G D T +K +L+ +VA++ + PH + +DP
Sbjct: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE---QDPEQ---------- 47
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
W +A V A+ +GQ HG+ LD ++ ++
Sbjct: 48 WWQATDRAMKALGDQHSLQDVKALGIAGQMHGATL-----------LDAQQRVL------ 90
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYD 190
+ + +W D +C +E V + +TG+ FT P++ + + +P ++
Sbjct: 91 ---RPAILWNDGRCAQECTLLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFR 144
Query: 191 DTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250
+++ + ++ + G +A D +DAAG +D+ +R WS ++L+A S +++ L
Sbjct: 145 QIDKVLLPKDYLRLRMTGEFAS-DMSDAAGTMWLDVAKRDWSDVMLQACDLS-RDQMPAL 202
Query: 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFG 310
+ G + P + + VV GDN G+ + + +SLGTS F
Sbjct: 203 YEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFA 261
Query: 311 ITDD--PEPRLEGHVFPNPVDTKGYMIMLVYKNAS-----------------LTREDVRN 351
+++ +P H F + + + +++ ++ AS + +
Sbjct: 262 VSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQAD 321
Query: 352 RCAEKSWDVFNKYL--QQTPPLNGGKMGFYY---KEHEILPPLPVGFHRYILENFEGETL 406
AE W F YL ++TP N G ++ +H P R +LE
Sbjct: 322 ESAEPVW--FLPYLSGERTPHNNPQAKGVFFGLTHQHG-----PNELARAVLEGVGYALA 374
Query: 407 DGVNEVEVKEFDPPS 421
DG++ V P S
Sbjct: 375 DGMDVVHACGIKPQS 389
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 137/361 (37%), Gaps = 21/361 (5%)
Query: 135 ESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER 194
S W D+ + ++ K G A ++ + TG + ++ L + V+ ++
Sbjct: 95 NSITWADNCAKSIVQD-AKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQK 153
Query: 195 ISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAH 254
+ ++ L G D T AAG +++++ W + +L+ +E+L K+A
Sbjct: 154 WIGIKEYIIFRLTGKLVT-DTTXAAGTGILNLKTLTWDQELLDILKIK-KEQLPKIAQPT 211
Query: 255 AVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDD 314
V I +V++ + + ++ + D S G+ S A+++GTS + I D
Sbjct: 212 KVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQ 271
Query: 315 PEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNR---CAEKSWDVFNKYLQQTPPL 371
P+ F P D Y++ N + R E D + + QT P
Sbjct: 272 PKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLD--VAQTAPA 329
Query: 372 NGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQF 431
+ F LP L G I + + G+ K P RA++EG
Sbjct: 330 GSRNLIF-------LPYLG-GERAPIWDANARGSFVGLTRXHQK----PEXARAVIEGII 377
Query: 432 LSMRGHAERF-GLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALR 490
++ A P I ATGG + + A+I+ I T + S +L A
Sbjct: 378 FNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTXKEQQSGTLAAXFL 437
Query: 491 A 491
A
Sbjct: 438 A 438
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 422 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD 481
E R + RG RF P R ++A G AN+TI+ CLA D + V P
Sbjct: 87 EFRKAIAKFMEKTRGGRVRF---DPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPY 141
Query: 482 SASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLA 524
+ LR G +PI + + TS + K A
Sbjct: 142 YPAFNRDLRWRTGV------QLIPIHCESSNNFKITSKAVKEA 178
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 136 SPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 195
S +W D + A+ E+E A+ ALE R + T +IR Q +P D+ E++
Sbjct: 11 SKIWADENKYAKMLEVELAILEALE------DRMVPKGTAAEIRARAQIRPERVDEIEKV 64
Query: 196 S 196
+
Sbjct: 65 T 65
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 495 YLCSKKGSFVPISNMYKDKLEKTSLSC-KLAVTAGDQQLVSKYAV 538
YL SK+ FVP ++YKD L L C V G + L S+ +
Sbjct: 122 YLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFLASRKXI 166
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSWTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 --------EVLTKADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|C Chain C, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|E Chain E, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|G Chain G, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 229
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 352 RCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNE 411
RC+ K + N Y+ G M F Y+E +I P GF +NF+G+ +D
Sbjct: 22 RCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGP---GFK----DNFQGD-IDIAKN 73
Query: 412 VEVKEFDPPSE 422
+ V + PSE
Sbjct: 74 LAVLKILAPSE 84
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 398 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 438
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 121 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 180
Query: 439 ERFGLPSPPRRIIATGGA 456
E F LP PPRR++ GG
Sbjct: 181 EAFYLPEPPRRVLTVGGG 198
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 398 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 438
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 120 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 179
Query: 439 ERFGLPSPPRRIIATGGA 456
E F LP PPRR++ GG
Sbjct: 180 EAFYLPEPPRRVLTVGGG 197
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 398 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 438
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 119 LEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSN 178
Query: 439 ERFGLPSPPRRIIATGGA 456
E F LP PPRR++ GG
Sbjct: 179 EAFYLPEPPRRVLTVGGG 196
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 398 LENFEG-ETLDGVNEVEVKE-FDPPSEVRALVEGQFLSMRGHA----------------- 438
LE F G +L+ N V V+E DP S V+ +E + + + +
Sbjct: 120 LEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIEHCISSN 179
Query: 439 ERFGLPSPPRRIIATGGA 456
E F LP PPRR++ GG
Sbjct: 180 EAFYLPEPPRRVLTVGGG 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,576,773
Number of Sequences: 62578
Number of extensions: 685182
Number of successful extensions: 1484
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 22
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)